BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009114
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 118/448 (26%), Positives = 179/448 (39%), Gaps = 85/448 (18%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY + V SGL GI +G I L+ + PE+++ LG
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLA----------------FLGA 94
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
I+ A+ P + + L+ ++ +L++ +++ + V+++
Sbjct: 95 SHRGAIITAAN-------PFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM 147
Query: 235 TYSNL---------LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
+ L+Q N P PDDV + Y+SGTTG PKG +L+H LI SV
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSV 207
Query: 286 AGATLGTK----FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
A G F+ DV + LP+ HIY A
Sbjct: 208 AQQVDGDNPNLYFHSEDVILCVLPMFHIY------------------------------A 237
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLV 401
L + C + R+ I + + GL E+ + M+S SP D+
Sbjct: 238 LNSIMLCGL-RVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK-SPDLDKHD 295
Query: 402 FNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETS-----CLISQL 455
+ + R + SG +PL ++ D ++ F R+ +GYGMTE CL
Sbjct: 296 LSSL--------RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAK 347
Query: 456 DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK 515
+ D G G+ E+K+VD +QP GEIC+RG I KGY D T
Sbjct: 348 EPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPEATS 404
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
ID++GW HTGDIG L I+DR
Sbjct: 405 RTIDKEGWLHTGDIGYIDDDDELFIVDR 432
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 124/293 (42%), Gaps = 55/293 (18%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER--A 313
DD+A I YTSGTTG KGA LSH NL ++ +F P DV I LP+ H + A
Sbjct: 155 DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ V G + + D K++D A R TV VP Y R+
Sbjct: 215 SNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFYTRLLQ-------------- 258
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
SP ++ + G R SG++PL D
Sbjct: 259 --------------------SP--------RLTKETTGHXRLFISGSAPLLADTHREWSA 290
Query: 434 CFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G V E YG TET+ S +GD + G VG ++ D PE + PR
Sbjct: 291 KTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----KELPR 344
Query: 494 GEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
G+I V+GP +FKGY++ +TK +DG+F TGD+G G + I+ R
Sbjct: 345 GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGR 397
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 111/458 (24%), Positives = 189/458 (41%), Gaps = 63/458 (13%)
Query: 95 YKYLGTRVRVDGTVG-EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI 153
Y LG + G +Y + Y E +G L +G+ I L N E+ I
Sbjct: 36 YAKLGAIAFTNAVTGVDYSYAEYLEKSXX---LGKALQNYGLVVDGRIALCSENCEEFFI 92
Query: 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA---VFCVPQTLNSLLSCLSEVPTVR 210
A FI V + T ++ +V+ + VF + L+ +++ V T++
Sbjct: 93 ---PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIK 149
Query: 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGT 270
IV++ D + T ++ T + S+ + + + VA I +SG+TG
Sbjct: 150 TIVILDSKVDYRGYQCLDTFIKRNTPPGFQA---SSFKTVEVDRKEQVALIMNSSGSTGL 206
Query: 271 PKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGV-AVG 326
PKG L+H N++ + A G + P ++ +P H + + + G V
Sbjct: 207 PKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM 266
Query: 327 FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386
+ D + + + T VP L+ A
Sbjct: 267 LTKFDEETFLKTLQDYKCTSVILVPTLF-------------------------------A 295
Query: 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGM 445
+L N S + ++ + + + + SG +PLS +V + + F V +GYG+
Sbjct: 296 IL---NKSELLNKYDLSNLVE--------IASGGAPLSKEVGEAVARRFNLPGVRQGYGL 344
Query: 446 TETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFK 505
TET+ I EGD+ G G + K++D ++ P RGE+CV+GP++ K
Sbjct: 345 TETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTKKSLGPNRRGEVCVKGPMLMK 401
Query: 506 GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GY + TKE+IDE+GW HTGDIG + I+DR
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/458 (24%), Positives = 189/458 (41%), Gaps = 63/458 (13%)
Query: 95 YKYLGTRVRVDGTVG-EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI 153
Y LG + G +Y + Y E +G L +G+ I L N E+ I
Sbjct: 36 YAKLGAIAFTNAVTGVDYSYAEYLEKSCX---LGKALQNYGLVVDGRIALCSENCEEFFI 92
Query: 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA---VFCVPQTLNSLLSCLSEVPTVR 210
A FI V + T ++ +V+ + VF + L+ +++ V T++
Sbjct: 93 ---PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIK 149
Query: 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGT 270
IV++ D + T ++ T + S+ + + + VA I +SG+TG
Sbjct: 150 TIVILDSKVDYRGYQCLDTFIKRNTPPGFQA---SSFKTVEVDRKEQVALIMNSSGSTGL 206
Query: 271 PKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGV-AVG 326
PKG L+H N++ + A G + P ++ +P H + + + G V
Sbjct: 207 PKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM 266
Query: 327 FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386
+ D + + + T VP L+ A
Sbjct: 267 LTKFDEETFLKTLQDYKCTSVILVPTLF-------------------------------A 295
Query: 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGM 445
+L N S + ++ + + + + SG +PLS +V + + F V +GYG+
Sbjct: 296 IL---NKSELLNKYDLSNLVE--------IASGGAPLSKEVGEAVARRFNLPGVRQGYGL 344
Query: 446 TETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFK 505
TET+ I EGD+ G G + K++D ++ P RGE+CV+GP++ K
Sbjct: 345 TETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTKKSLGPNRRGEVCVKGPMLMK 401
Query: 506 GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GY + TKE+IDE+GW HTGDIG + I+DR
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 111/458 (24%), Positives = 189/458 (41%), Gaps = 63/458 (13%)
Query: 95 YKYLGTRVRVDGTVG-EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI 153
Y LG + G +Y + Y E +G L +G+ I L N E+ I
Sbjct: 36 YAKLGAIAFTNAVTGVDYSYAEYLEKSCX---LGKALQNYGLVVDGRIALCSENCEEFFI 92
Query: 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA---VFCVPQTLNSLLSCLSEVPTVR 210
A FI V + T ++ +V+ + VF + L+ +++ V T++
Sbjct: 93 ---PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIK 149
Query: 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGT 270
IV++ D + T ++ T + S+ + + + VA I +SG+TG
Sbjct: 150 TIVILDSKVDYRGYQCLDTFIKRNTPPGYQA---SSFKTVEVDRKEQVALIMNSSGSTGL 206
Query: 271 PKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGV-AVG 326
PKG L+H N++ + A G + P ++ +P H + + + G V
Sbjct: 207 PKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM 266
Query: 327 FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386
+ D + + + T VP L+ A
Sbjct: 267 LTKFDEETFLKTLQDYKCTNVILVPTLF-------------------------------A 295
Query: 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGM 445
+L N S + ++ + + + + SG +PLS +V + + F V +GYG+
Sbjct: 296 IL---NKSELLNKYDLSNLVE--------IASGGAPLSKEVGEAVARRFNLPGVRQGYGL 344
Query: 446 TETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFK 505
TET+ I EGD+ G G + K++D ++ P RGE+CV+GP++ K
Sbjct: 345 TETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTKKSLGPNRRGEVCVKGPMLMK 401
Query: 506 GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GY + TKE+IDE+GW HTGDIG + I+DR
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 120/293 (40%), Gaps = 55/293 (18%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER--A 313
DD+A I YTSGTTG GA+LSH NL ++ +F P DV I LP+ H + A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ V G + D ++D MA R TV VP Y R+
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQ-------------- 258
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
SP ++ + G +R SG++PL D
Sbjct: 259 --------------------SP--------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G V E YGMTET+ S +GD + G VG ++ D PE PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
G+I V GP +F GY++ T +DG+F TGD+G G + I+ R
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGR 397
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 120/293 (40%), Gaps = 55/293 (18%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER--A 313
DD+A I YTSGTTG GA+LSH NL ++ +F P DV I LP+ H + A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ V G + D ++D MA R TV VP Y R+
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQ-------------- 258
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
SP ++ + G +R SG++PL D
Sbjct: 259 --------------------SP--------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G V E YGMTET+ S +GD + G VG ++ D PE PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
G+I V GP +F GY++ T +DG+F TGD+G G + I+ R
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGR 397
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 120/293 (40%), Gaps = 55/293 (18%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER--A 313
DD+A I YTSGTTG GA+LSH NL ++ +F P DV I LP+ H + A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ V G + D ++D MA R TV VP Y R+
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQ-------------- 258
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
SP ++ + G +R SG++PL D
Sbjct: 259 --------------------SP--------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G V E YGMTET+ S +GD + G VG ++ D PE PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
G+I V GP +F GY++ T +DG+F TGD+G G + I+ R
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGR 397
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 176/458 (38%), Gaps = 90/458 (19%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
GE TY E + GL G+ G + N L A +
Sbjct: 43 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
L P + YI+NHA + + P L + + E+ TV+ VV+ D++ P
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVM---DEKAPE---- 155
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
L Y L + P P+ + YT+GTTG PKG V SH L+ A
Sbjct: 156 ---GYLAYEEALGE---EADPVRVPE-RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA 208
Query: 289 TL--GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
+L GT DV + +P+ H+ N Y+ VG Q +D
Sbjct: 209 SLVDGTALSEKDVVLPVVPMFHV----NAWCLPYAATLVGAKQVLPGPRLDP-------- 256
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
S+ L++ T+ V T +W L
Sbjct: 257 -ASLVELFDGEGVTFTAGVPT----------------------------VW--LALADYL 285
Query: 407 DKLGGRVRFM-----GSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ------- 454
+ G R++ + G A+P S + F ++ G V +GYG+TETS ++ Q
Sbjct: 286 ESTGHRLKTLRRLVVGGSAAPRS-LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHL 342
Query: 455 --LDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFK 505
L E + L+ G P +++ D E +P P+ GE+ ++GP I
Sbjct: 343 ESLSEEEKLTLKAKTGLPIPLVRLRVAD-------EEGRPVPKDGKALGEVQLKGPWITG 395
Query: 506 GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GYY +E T+ + DG+F TGDI +W G ++I DR
Sbjct: 396 GYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 63/373 (16%)
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+N + VF + L +L+ ++P ++ I+++ D G Q + Y+ +
Sbjct: 118 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQSM-YTFVT 169
Query: 241 SQ-----GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGT 292
S + P S + +A I +SG+TG PKG L H + A G
Sbjct: 170 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 229
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVP 351
+ P +S +P H + + + G V Y+ + + + + VP
Sbjct: 230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 289
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L+ ++ AK S + D+ + + +
Sbjct: 290 TLF------------------------SFFAK----------STLIDKYDLSNLHE---- 311
Query: 412 RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
+ SG +PLS +V + + F + +GYG+TET+ I EGD+ G VG
Sbjct: 312 ----IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 367
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
E K+VD+ +Q RGE+CVRGP+I GY + T +ID+DGW H+GDI
Sbjct: 368 FFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 531 MWIPGGRLKIIDR 543
W I+DR
Sbjct: 425 YWDEDEHFFIVDR 437
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 63/373 (16%)
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+N + VF + L +L+ ++P ++ I+++ D G Q + Y+ +
Sbjct: 123 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQSM-YTFVT 174
Query: 241 SQ-----GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGT 292
S + P S + +A I +SG+TG PKG L H + A G
Sbjct: 175 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 234
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVP 351
+ P +S +P H + + + G V Y+ + + + + VP
Sbjct: 235 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 294
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L+ ++ AK S + D+ + + +
Sbjct: 295 TLF------------------------SFFAK----------STLIDKYDLSNLHE---- 316
Query: 412 RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
+ SG +PLS +V + + F + +GYG+TET+ I EGD+ G VG
Sbjct: 317 ----IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 372
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
E K+VD+ +Q RGE+CVRGP+I GY + T +ID+DGW H+GDI
Sbjct: 373 FFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 531 MWIPGGRLKIIDR 543
W I+DR
Sbjct: 430 YWDEDEHFFIVDR 442
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 63/373 (16%)
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+N + VF + L +L+ ++P ++ I+++ D G Q + Y+ +
Sbjct: 118 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQSM-YTFVT 169
Query: 241 SQ-----GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGT 292
S + P S + +A I +SG+TG PKG L H + A G
Sbjct: 170 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 229
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVP 351
+ P +S +P H + + + G V Y+ + + + + VP
Sbjct: 230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 289
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L+ ++ AK S + D+ + + +
Sbjct: 290 TLF------------------------SFFAK----------STLIDKYDLSNLHE---- 311
Query: 412 RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
+ SG +PLS +V + + F + +GYG+TET+ I EGD+ G VG
Sbjct: 312 ----IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 367
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
E K+VD+ +Q RGE+CVRGP+I GY + T +ID+DGW H+GDI
Sbjct: 368 FFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 531 MWIPGGRLKIIDR 543
W I+DR
Sbjct: 425 YWDEDEHFFIVDR 437
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 152/373 (40%), Gaps = 63/373 (16%)
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+N + VF + L +L+ ++P ++ I+++ D G Q + Y+ +
Sbjct: 123 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQSM-YTFVT 174
Query: 241 SQ-----GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGT 292
S + P S + +A I +SG+TG PKG L H L + A G
Sbjct: 175 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGN 234
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVP 351
+ P +S +P H + + + SG V Y+ + + + + VP
Sbjct: 235 QIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 294
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L+ ++ AK S + D+ + + +
Sbjct: 295 TLF------------------------SFLAK----------STLIDKYDLSNLHE---- 316
Query: 412 RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
+ SG +PLS +V + + F + +GYG+TET+ I +GD+ G VG
Sbjct: 317 ----IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVP 372
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
E K+VD+ +Q RGE+ VRGP+I GY + T +ID+DGW H+GDI
Sbjct: 373 FFEAKVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 531 MWIPGGRLKIIDR 543
W I+DR
Sbjct: 430 YWDEDEHFFIVDR 442
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 127/511 (24%), Positives = 203/511 (39%), Gaps = 66/511 (12%)
Query: 40 EQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLG 99
EQ S V+ ++ + +V S+ P + P+H + HD + + F L
Sbjct: 28 EQAVSQVMEKQSNNNNSDVIFRSKLPDIYI---PNHLSL---HDYIFQNISEFATKPCL- 80
Query: 100 TRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159
++G G TY + ++ + G+++ + L N PE+++ A S
Sbjct: 81 ----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAAS 134
Query: 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID 219
+ P + ++ + + + ++ + ++ VVI ID
Sbjct: 135 FRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDG-----VVIVCID 189
Query: 220 DQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHG 279
D S+PI G T + S + PDDV + Y+SGTTG PKG +L+H
Sbjct: 190 DN-ESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK 248
Query: 280 NLIASVAGATLGTK----FYPSDVYISYLPLAHIYERANQVMT--VYSGVAVGFYQGDNM 333
L+ SVA G F+ DV + LP+ HIY N +M + G A+ +
Sbjct: 249 GLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA-LNSIMLCGLRVGAAILIMPKFEI 307
Query: 334 KLMDDMAA-LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392
L+ ++ + TV VP I A+ S + ++ K A GK
Sbjct: 308 NLLLELIQRCKVTVAPMVPP--------IVLAIAKSSETEKYDLSSIRVVKSGAAPLGKE 359
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452
+ D + KLG G G + P + L G E + + +C
Sbjct: 360 ---LEDAVNAKFPNAKLG-----QGYGMTEAGPVLAMSL-----GFAKEPFPVKSGAC-- 404
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512
G+ E+K+VD + S +QP GEIC+RG I KGY +
Sbjct: 405 -------------GTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPA 448
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
T E ID+DGW HTGDIG+ L I+DR
Sbjct: 449 ATAETIDKDGWLHTGDIGLIDDDDELFIVDR 479
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 150/363 (41%), Gaps = 58/363 (15%)
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VFC + L +L ++P ++ IV++ +D + + + ++ + L G +
Sbjct: 160 VFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIE-----SHLPAGFNEYD 214
Query: 249 --PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISY 303
P S + A I +SG+TG PKG L+H N+ + G + P ++
Sbjct: 215 YIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTV 274
Query: 304 LPLAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
+P H + + + G V Y+ + + + + VP L+
Sbjct: 275 IPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF-------- 326
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
++ AK S + D+ + + + + SG +P
Sbjct: 327 ----------------SFFAK----------STLVDKYDLSNLHE--------IASGGAP 352
Query: 423 LSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVP 480
L+ +V + + F + +GYG+TET+ I G D+ G G K+VD+
Sbjct: 353 LAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLD 412
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
+Q RGE+CV+GP+I KGY + T +ID+DGW H+GDI + G I
Sbjct: 413 TGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFI 469
Query: 541 IDR 543
+DR
Sbjct: 470 VDR 472
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 121/297 (40%), Gaps = 59/297 (19%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A + YTSGTTG PKGAV+ L ++ ++ DV + LPL H++ V
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH---GLV 212
Query: 317 MTVYSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
+ + + G F + ++D A T+ VP +Y+RI
Sbjct: 213 LGILGPLRRGGSVRHLGRFSTEGAARELNDGA----TMLFGVPTMYHRIA---------- 258
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
E L AK A G R+ GS A P V
Sbjct: 259 ----ETLPADPELAKALA-----------------------GARLLVSGSAALP----VH 287
Query: 429 DFLKICF--GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486
D +I G RV E YGMTET S +G+ +G VG P E++LV+ +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAA 347
Query: 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
D GEI VRGP +F Y T EDG+F TGD+ + P G ++I+ R
Sbjct: 348 LDGES-VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGR 403
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 102/438 (23%), Positives = 172/438 (39%), Gaps = 83/438 (18%)
Query: 125 EVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHA 184
++ SG+ G+ KG +G+ N +++ +A + VP+ +++I+N +
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDS 123
Query: 185 SVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGR 244
V L + E V + V+GG ++ + S + G
Sbjct: 124 EA-TTLVVHSXLYENFKPVLEKTGVERVFVVGG--------------EVNSLSEVXDSGS 168
Query: 245 SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYL 304
+ + +DVA I YT GTTG PKG L+H NL A+ + T D +
Sbjct: 169 EDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCX 228
Query: 305 PLAHIYERANQVMTVYSG---VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGI 361
P H E + V G V G + + L +++ + T +VP N + +
Sbjct: 229 PXFHSAEFGLVNLXVTVGNEYVVXGXFNQE--XLAENIEKYKGTFSWAVPPALNVLVNTL 286
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
S+ N Y+ W L + +GA
Sbjct: 287 ESS------------NKTYD---------------WSYL-------------KVFATGAW 306
Query: 422 PLSPDVLD-FLKI----CFGGRVTEG--YGMTETSCLIS-----QLDEGDNLSGHVGSPN 469
P++P +++ LK+ C R+ +G TE ++ +LD+ S G P
Sbjct: 307 PVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDK----STTQGVPX 362
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEV--IDEDG--WFH 525
+ E+K++ + + + GEI +RGP IFKGY+K E + +E DE G +F
Sbjct: 363 SDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR 419
Query: 526 TGDIGMWIPGGRLKIIDR 543
TGD+G G L DR
Sbjct: 420 TGDVGFIDEEGFLHFQDR 437
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/433 (22%), Positives = 163/433 (37%), Gaps = 68/433 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + L GI+KG + L N E+ + + + ++VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
V +I++ + + V + P+ +I I D P +T +
Sbjct: 104 APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQAD--PPGTVTDWIGA 148
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL--IASVAGATLG 291
+ + L ++ +P DD I YTSGTTG PKG V +H ++ AS +T+
Sbjct: 149 DSLAERLRSAAAD-EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP 351
++ D + LP+ H+ A ++S A+R S+P
Sbjct: 208 VRY--RDRLLLPLPMFHV---AALTTVIFS-------------------AMRGVTLISMP 243
Query: 352 RL-YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
+ ++++ I GG + N + A L +
Sbjct: 244 QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPD------------------ 285
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
R+ +G +P+ P+ L + V +GY +TE SC L ++ GS
Sbjct: 286 --FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGR 341
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
A DV + GE+ ++ ++ K Y+ T++ D +GWF TGDIG
Sbjct: 342 AT--MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIG 398
Query: 531 MWIPGGRLKIIDR 543
G L I DR
Sbjct: 399 EIDDEGYLYIKDR 411
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 122/326 (37%), Gaps = 76/326 (23%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLAHIYE 311
P P+D+A + YTSG+T P+G +++H + A++ + G K P D +S+LP H
Sbjct: 172 PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHDXG 231
Query: 312 RANQVMT-VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
++T V + ++V + LR F P + ++ + V +
Sbjct: 232 LVGFLLTPVATQLSVDY--------------LRTQDFAXRPLQWLKLISKNRGTVSVAPP 277
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
L N K A L W R G GA P+S + L
Sbjct: 278 FGYELCQRRVNEKDLAELD----LSCW----------------RVAGIGAEPISAEQLHQ 317
Query: 431 LKICF------GGRVTEGYGMTETSCLISQLDEGDNL------------SGHVGSPNAAC 472
CF YG+ E + +S DE + G +P A
Sbjct: 318 FAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGA-- 375
Query: 473 EIKLVD--------VPEMNYTSEDQ---PCPR---GEICVRGPLIFKGYYKDEIQTKEVI 518
E + V +PE ++ P G IC+ GP + GY+ D++ E I
Sbjct: 376 ETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDE-I 434
Query: 519 DEDGWFHTGDIGMWIPG-----GRLK 539
GW TGD+G + G GR+K
Sbjct: 435 AATGWLDTGDLGYLLDGYLYVTGRIK 460
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/432 (21%), Positives = 162/432 (37%), Gaps = 68/432 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + L GI+KG + L N E+ + + + ++VP+ L
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
V +I++ + + V + P+ +I I D P +T +
Sbjct: 90 APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQAD--PPGTVTDWIGA 134
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL--IASVAGATLG 291
+ + L ++ +P DD I YTSGTTG PKG V +H ++ AS +T+
Sbjct: 135 DSLAERLRSAAAD-EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 193
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP 351
++ D + LP+ H+ A ++S A+R S+P
Sbjct: 194 VRY--RDRLLLPLPMFHV---AALTTVIFS-------------------AMRGVTLISMP 229
Query: 352 RL-YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
+ ++++ I GG + N + A L +
Sbjct: 230 QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPD------------------ 271
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
R+ +G +P+ P+ L + V +GY +TE SC L ++ GS
Sbjct: 272 --FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGR 327
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
A DV + GE+ ++ ++ K Y+ T++ D +GWF TGDIG
Sbjct: 328 AT--MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIG 384
Query: 531 MWIPGGRLKIID 542
G L I D
Sbjct: 385 EIDDEGYLYIKD 396
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/447 (23%), Positives = 163/447 (36%), Gaps = 94/447 (21%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
++Y E + L HG KGS + LY E +I V A +AY +P+
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY----LPVD 545
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
L D + Y++ +S +CL + + +Q LP T
Sbjct: 546 PKLPEDRISYMLA--------------DSAAACL---------LTHQEMKEQAAELPYTG 582
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+ + S+ P + P+D A I YTSGTTG PKG + +H N+ V
Sbjct: 583 TTLFIDDQTRFEEQASD--PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVD 640
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
F D ++S A + FY +
Sbjct: 641 Y-MAFSDQDTFLSVSNYA------------FDAFTFDFYAS----------------MLN 671
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
RL I A + + T ERL + M + + L+ + +D +
Sbjct: 672 AARL---IIADEHTLLDT-----ERLTDLILQENVNVMFA----TTALFNLLTDAGEDWM 719
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ---LDEGDNLSGH-V 465
G + G P V L+I G++ YG TE + + D D++S +
Sbjct: 720 KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPI 779
Query: 466 GSP--NAACEIKLVDVPEMNYTSEDQPC-PRGEICVRGPLIFKGYYKDEIQTKEVIDEDG 522
G P NA+ I +N S+ QP GE+C+ G + KGY TKE E+
Sbjct: 780 GKPISNASVYI-------LNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENP 832
Query: 523 W------FHTGDIGMWIPGGRLKIIDR 543
+ + TGD+ W+P G ++ R
Sbjct: 833 FKPGETLYRTGDLARWLPDGTIEYAGR 859
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 170/454 (37%), Gaps = 82/454 (18%)
Query: 90 DTFRDY--KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVN 147
D RD KY G R+ + T G W +Y E T + +G GI + + + N
Sbjct: 29 DLLRDRAAKY-GDRIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPN 84
Query: 148 RPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL------LS 201
E+ V A + V + + Y A A + +P +
Sbjct: 85 IKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQ 143
Query: 202 CLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP--KPDDVA 259
S++PT++ I+V G ++ +P + T +P P K DVA
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHT------------------EPVKLPEVKSSDVA 185
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
+ + G+TG K +H + I S+ + S VY++ LP+AH Y ++
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSS----- 240
Query: 320 YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379
GV Y G + L + P+ + P L R IT+ V
Sbjct: 241 -PGVLGVLYAGGRVVL-----SPSPSPDDAFP-LIEREKVTITALV-------------- 279
Query: 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439
AM+ S D L ++ + G + S + +K FG +
Sbjct: 280 ---PPLAMVWMDAASSRRDDL----------SSLQVLQVGGAKFSAEAARRVKAVFGCTL 326
Query: 440 TEGYGMTETSCLISQLDEGD----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
+ +GM E ++LD+ + N G SP E ++ D ++ + +P G
Sbjct: 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYD--ESRVWD----DHDRDVKPGETGH 380
Query: 496 ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
+ RGP +GYYK E EDG++ TGDI
Sbjct: 381 LLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 47/297 (15%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+P D+VA + GTTGTPK +H + SV + +F Y+ +P AH
Sbjct: 179 TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAH-- 236
Query: 311 ERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
N M+ + V F G + L D P+ P L + +T+
Sbjct: 237 ---NYAMSSPGSLGV-FLAGGTVVLAAD-----PSATLCFP-LIEKHQVNVTA------- 279
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
L A + QA++ G++ + + ++ + G + LS +
Sbjct: 280 ----LVPPAVSLWLQALIEGESRAQL--------------ASLKLLQVGGARLSATLAAR 321
Query: 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV-GSPNAACEIKLVDVPEMNYTSEDQ 489
+ G ++ + +GM E ++LD+ H G P C V V + +E
Sbjct: 322 IPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYP--MCPDDEVWVAD----AEGN 375
Query: 490 PCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P P+GE+ RGP F+GYYK D +G++ +GD+ P G + + R
Sbjct: 376 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGR 432
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/459 (20%), Positives = 176/459 (38%), Gaps = 91/459 (19%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G K T+ + + + + HGI KG + L +R ++ I+VP
Sbjct: 82 GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
L + Y + A ++ + C VP+ ++ + ++P + +GG +
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKK--AKVGG---DVL 196
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
I ++ S + + + K +D+ + ++SGT G PK ++ H N
Sbjct: 197 EGWIDFRKELEESSPIFERPTGEVST----KNEDICLVYFSSGTAGFPK--MVEHDNTYP 250
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVY--------SGVAVGFYQGDNMK- 334
G L K++ + + L + + V+ +G AV Y D +
Sbjct: 251 --LGHILTAKYWQN---VEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEA 305
Query: 335 --LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392
+++ + T FC+ P +Y + ++E L + ++ K A+++G+
Sbjct: 306 KNMLEKASKYGVTTFCAPPTIYRFL-------------IKEDLSHYNFSTLKYAVVAGE- 351
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452
PL+P+V + G ++ EG+G TET I
Sbjct: 352 -----------------------------PLNPEVFNRFLEFTGIKLMEGFGQTETVVTI 382
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC---PRGEICVR----GPL-IF 504
+ + G +G P +I+L+D + + C GEI + P+ +F
Sbjct: 383 ATFPWMEPKPGSIGKPTPGYKIELMD-------RDGRLCEVGEEGEIVINTMEGKPVGLF 435
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y KD +T+E DG++HTGD+ G L + R
Sbjct: 436 VHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGR 473
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/417 (22%), Positives = 166/417 (39%), Gaps = 77/417 (18%)
Query: 137 KGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDT-LGPDAVKYIVNHASVQAVFC-VPQ 194
+ S +GLY N + +I+ HAC + I + + +T L P+ + + VQ +FC +P
Sbjct: 47 QQSRVGLYIDNSIQSIILIHAC-WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPL 105
Query: 195 TLNSL-LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL--SQGRSNLQPFS 251
L + L ++ + G+ D T G+Q T + + + SN+ S
Sbjct: 106 ELRGFQIVSLDDIEFAGRDITTNGLLDN------TMGIQYDTSNETVVPKESPSNILNTS 159
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311
DD+A+I +TSGTTG K + N AS G F ++S LP+ HI
Sbjct: 160 F-NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHI-- 216
Query: 312 RANQVMTVYSGVAV---GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
SG++V +G ++++D A + R+ I+ +T
Sbjct: 217 ---------SGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERI-----THISLVPQTL 262
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
L ++ + YN +K + G + LS ++
Sbjct: 263 NWLMQQGLHEPYNLQKILL-------------------------------GGAKLSATMI 291
Query: 429 DFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486
+ + + + +GMTET L + + VG P+A ++K+ + + +
Sbjct: 292 E-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH-- 348
Query: 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+ ++G + GY T E+G+F+TGDI G + I DR
Sbjct: 349 -------GELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDR 396
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 100/454 (22%), Positives = 171/454 (37%), Gaps = 82/454 (18%)
Query: 90 DTFRDY--KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVN 147
D RD KY G R+ + T G W +Y E T + +G GI + + + N
Sbjct: 29 DLLRDRAAKY-GDRIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPN 84
Query: 148 RPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL------LS 201
E+ V A + V + + Y A A + +P +
Sbjct: 85 IKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQ 143
Query: 202 CLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP--KPDDVA 259
S++PT++ I+V G ++ +P + T +P P K DVA
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHT------------------EPVKLPEVKSSDVA 185
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
+ + G+TG K +H + I S+ + S VY++ LP AH Y ++
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSS----- 240
Query: 320 YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379
GV Y G + L + P+ + P L R IT+ V + + A
Sbjct: 241 -PGVLGVLYAGGRVVL-----SPSPSPDDAFP-LIEREKVTITALVPPLAXV----WXDA 289
Query: 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439
++++ + S ++ + G + S + +K FG +
Sbjct: 290 ASSRRDDLSS-----------------------LQVLQVGGAKFSAEAARRVKAVFGCTL 326
Query: 440 TEGYGMTETSCLISQLDEGD----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
+ +G E ++LD+ + N G SP E ++ D ++ + +P G
Sbjct: 327 QQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSPYD--ESRVWD----DHDRDVKPGETGH 380
Query: 496 ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
+ RGP +GYYK E EDG++ TGDI
Sbjct: 381 LLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 438 RVTEGYGMTETSCLISQLDEGD-NLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPRGE 495
++ + +GM E ++LD+ D + G P ++ EIK+VD + + P GE
Sbjct: 334 KLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-------EQYREVPEGE 386
Query: 496 I---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
I RGP F GYY+ +V DED ++++GD+ P G L+++ R
Sbjct: 387 IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGR 437
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 424 SPDVLD-FLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
+P+ ++ F C +G +ETS L S + G P + +VD
Sbjct: 282 TPETIERFEATCPNATFWATFGQSETSGL-STFAPYRDRPKSAGRPLFWRTVAVVD---- 336
Query: 483 NYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ED+P P GE I +RGP +FKGY+ + T+ +GW HTGD+G + G L
Sbjct: 337 ---AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYL 391
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 122 ARTE-VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
AR E + SGL+ G+ G + + N E + + A + I +P+ L D + ++
Sbjct: 39 ARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFV 98
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+ + V + + L + V+ IG D P P + +L
Sbjct: 99 LGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIG--DGSGPFAP---------FKDLA 147
Query: 241 SQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
S PFS P+ D I +T+ G P+GA++S GNL+ + + + +D
Sbjct: 148 SD-----TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEAD 202
Query: 299 VYISYLPLAHI 309
V + LPL H+
Sbjct: 203 VNLGMLPLFHV 213
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 99/287 (34%), Gaps = 55/287 (19%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATLGTKFYPSDVYISYLPLAHIYER 312
DD+A Y+SG+TG PKG V +H NL + A LG +DV S L Y
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIA--ENDVVFSAAKLFFAYGL 240
Query: 313 ANQVMTVYSGVAVGFYQGDNM---KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
N + S A + + + RPTVF VP LY +
Sbjct: 241 GNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANM------------ 288
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
LV + + +R S L ++ +
Sbjct: 289 ------------------------------LVSPNLPARADVAIRICTSAGEALPREIGE 318
Query: 430 FLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FG + +G G TE + G G G P EI+L D E + D
Sbjct: 319 RFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD--EAGHAVPDG 376
Query: 490 PCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
G++ ++GP Y+ + +++ + W +GD +P G
Sbjct: 377 EV--GDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNG 420
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
P +D+A + YTSGTTG PKG + H N++A +AGA F D ++ + L+ +
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDF-- 229
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
V ++ F G + ++ AA P + +V
Sbjct: 230 --SVWEIWG----AFSTGAELVVLPHWAARTPEQYLAV 261
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 19/127 (14%)
Query: 425 PD-VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVD--- 478
PD VL+ + G GYG TE S + Q G ++ P E+++V
Sbjct: 285 PDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPKTGTEMA-----PGFFSEVRIVRIGG 339
Query: 479 -VPEMNYTSEDQPCPRGEICVRGP-LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
V E+ E+ GE+ V F GY T E + +DGW+ T D+ +W P G
Sbjct: 340 GVDEIVANGEE-----GELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEG 393
Query: 537 RLKIIDR 543
++I+ R
Sbjct: 394 TVRILGR 400
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSC--LSEV-----PTVRLIVVIGGIDDQIPS 224
+ P++ ++ ++ + VP LN L L+E+ T +I V + D I
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI-- 117
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFS--PP------KPDDVATICYTSGTTGTPKGAVL 276
+G +I+ +L+ G +P+S PP +P A I YTSGTTG PK A++
Sbjct: 118 FQSGSGARIIFLGDLVRDG----EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAII 173
Query: 277 SHGNLIASV--AGATLGTKFYPSDVYISYLPLAHI 309
+ V +G + +V + +PL H+
Sbjct: 174 PQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 33/175 (18%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSF 163
V E + +TY E ++ I GI K + +G+ + I V A AY
Sbjct: 59 VCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY-- 116
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
VP+ + ++YI++ + R+++ + I
Sbjct: 117 --VPIDIEYPKERIQYILDDSQA-----------------------RMLLTQKHLVHLIH 151
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
++ V+I + + +NL P K D+A + YTSGTTG PKG +L H
Sbjct: 152 NIQFNGQVEIFEEDTIKIREGTNLH--VPSKSTDLAYVIYTSGTTGNPKGTMLEH 204
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVT--EGYGMTETSCLISQLDEGDNLSGH---VGS 467
++ + + S SP +++ K +VT YG TET+ + GH +G+
Sbjct: 295 IQTLITAGSATSPSLVNKWK----EKVTYINAYGPTETTICATTWVATKETIGHSVPIGA 350
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD-EIQTKEVIDE-----D 521
P +I +VD + S + GE+C+ G + +GY+K E+ +++ +D +
Sbjct: 351 PIQNTQIYIVD-ENLQLKSVGEA---GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGE 406
Query: 522 GWFHTGDIGMWIPGGRLKIIDR 543
+ TGD W+ G ++ + R
Sbjct: 407 KLYKTGDQARWLSDGNIEYLGR 428
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
+ K ++Y E + L+ GI KG + +Y PE + AC+ + ++
Sbjct: 104 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT- 228
P+AV + +S + V + + + R I + +DD + + +T
Sbjct: 164 GGFSPEAVAGCIIDSSSRLVITADEGVRA----------GRSIPLKKNVDDALKNPNVTS 213
Query: 229 ---------TGVQI-------LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272
TG I L + +L+ + QP +D I YTSG+TG PK
Sbjct: 214 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP-EAMNAEDPLFILYTSGSTGKPK 272
Query: 273 GAVLSHGN-LIASVAGATLGTKFYPSDVY 300
G + + G L+ + ++P D+Y
Sbjct: 273 GVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
+ K ++Y E + L+ GI KG + +Y PE + AC+ + ++
Sbjct: 104 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT- 228
P+AV + +S + V + + + R I + +DD + + +T
Sbjct: 164 GGFSPEAVAGRIIDSSSRLVITADEGVRA----------GRSIPLKKNVDDALKNPNVTS 213
Query: 229 ---------TGVQI-------LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272
TG I L + +L+ + QP +D I YTSG+TG PK
Sbjct: 214 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP-EAMNAEDPLFILYTSGSTGKPK 272
Query: 273 GAVLSHGN-LIASVAGATLGTKFYPSDVY 300
G + + G L+ + ++P D+Y
Sbjct: 273 GVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
+ K ++Y E + L+ GI KG + +Y PE + AC+ + ++
Sbjct: 104 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT- 228
P+AV + +S + V + + + R I + +DD + + +T
Sbjct: 164 GGFSPEAVAGRIIDSSSRLVITADEGVRA----------GRSIPLKKNVDDALKNPNVTS 213
Query: 229 ---------TGVQI-------LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272
TG I L + +L+ + QP +D I YTSG+TG PK
Sbjct: 214 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP-EAMNAEDPLFILYTSGSTGKPK 272
Query: 273 GAVLSHGN-LIASVAGATLGTKFYPSDVY 300
G + + G L+ + ++P D+Y
Sbjct: 273 GVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
+ K ++Y E + L+ GI KG + +Y PE + AC+ + ++
Sbjct: 104 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT- 228
P+AV + +S + V + + + R I + +DD + + +T
Sbjct: 164 GGFSPEAVAGRIIDSSSRLVITADEGVRA----------GRSIPLKKNVDDALKNPNVTS 213
Query: 229 ---------TGVQI-------LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272
TG I L + +L+ + QP +D I YTSG+TG PK
Sbjct: 214 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP-EAMNAEDPLFILYTSGSTGKPK 272
Query: 273 GAVLSHGN-LIASVAGATLGTKFYPSDVY 300
G + + G L+ + ++P D+Y
Sbjct: 273 GVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 220 DQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHG 279
D++ + P + + ++ S+ QP S K +D+A + YTSG+T PKG +SH
Sbjct: 132 DELNTNPKFLKIPAIALESIELNRSSSWQPTSI-KSNDIAFLQYTSGSTXHPKGVXVSHH 190
Query: 280 NLIASVAGATLGTKFYPSD--VYISYLPLAHIYERANQVMT-VYSGV 323
NL+ ++ + T F+ +D + S+LP H ++T +Y G+
Sbjct: 191 NLLDNL--NKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGI 235
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
+ K ++Y E + L+ GI KG + +Y PE + AC+ + ++
Sbjct: 104 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT- 228
P+AV + +S + V + + + R I + +DD + + +T
Sbjct: 164 GGFSPEAVAGRIIDSSSRLVITADEGVRA----------GRSIPLKKNVDDALKNPNVTS 213
Query: 229 ---------TGVQI-------LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272
TG I L + +L+ + QP +D I YTSG+TG PK
Sbjct: 214 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP-EAMNAEDPLFILYTSGSTGKPK 272
Query: 273 GAVLSHGN-LIASVAGATLGTKFYPSDVY 300
G + + G L+ + ++P D+Y
Sbjct: 273 GVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
+ K ++Y E + L+ GI KG + +Y PE + AC+ + ++
Sbjct: 104 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT- 228
P+AV + +S + V + + + R I + +DD + + +T
Sbjct: 164 GGFSPEAVAGRIIDSSSRLVITADEGVRA----------GRSIPLKKNVDDALKNPNVTS 213
Query: 229 ---------TGVQI-------LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272
TG I L + +L+ + QP +D I YTSG+TG PK
Sbjct: 214 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP-EAMNAEDPLFILYTSGSTGKPK 272
Query: 273 GAVLSHGN-LIASVAGATLGTKFYPSDVY 300
G + + G L+ + ++P D+Y
Sbjct: 273 GVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
+ K ++Y E + L+ GI KG + +Y PE + AC+ + ++
Sbjct: 104 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT- 228
P+AV + +S + V + + + S I + +DD + + +T
Sbjct: 164 GGFSPEAVAGRIIDSSSRLVITADEGVRAGAS----------IPLKKNVDDALKNPNVTS 213
Query: 229 ---------TGVQI-------LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272
TG I L + +L+ + QP +D I YTSG+TG PK
Sbjct: 214 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP-EAMNAEDPLFILYTSGSTGKPK 272
Query: 273 GAVLSHGN-LIASVAGATLGTKFYPSDVY 300
G + + G L+ + ++P D+Y
Sbjct: 273 GVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 425 PD-VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVD--- 478
PD VL+ + G YG TE S + Q G ++ P E+++V
Sbjct: 285 PDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPKTGTEMA-----PGFFSEVRIVRIGG 339
Query: 479 -VPEMNYTSEDQPCPRGEICVRGP-LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
V E+ E+ GE+ V F GY T E + +DGW+ T D+ +W P G
Sbjct: 340 GVDEIVANGEE-----GELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEG 393
Query: 537 RLKIIDR 543
++I+ R
Sbjct: 394 TVRILGR 400
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSC--LSEV-----PTVRLIVVIGGIDDQIPS 224
+ P++ ++ ++ + VP LN L L+E+ T +I V + D I
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI-- 117
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFS--PP------KPDDVATICYTSGTTGTPKGAVL 276
+G +I+ +L+ G +P+S PP +P A I YTSGTTG PK A++
Sbjct: 118 FQSGSGARIIFLGDLVRDG----EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAII 173
Query: 277 SHGNLIASV--AGATLGTKFYPSDVYISYLPLAHI 309
+ V +G + +V + +PL H+
Sbjct: 174 PQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 21/215 (9%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTR------VRVDGTVGEYKW--MTYGEAGTARTEV 126
H E+ + +D + D + G R V+G E W E V
Sbjct: 30 HQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANV 89
Query: 127 GSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186
SG G+ +G + + PEW +V C I +P + + Y + +
Sbjct: 90 LSGAC--GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA 147
Query: 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246
+A+ + + + + SE P++R+ +++ + L + LL++ S
Sbjct: 148 KAIVAGDEVIQEVDTVASECPSLRIKLLVSE----------KSCDGWLNFKKLLNEA-ST 196
Query: 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
+ + I +TSGT+G PK A S+ +L
Sbjct: 197 THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSL 231
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
L P+ L+ + G + E YG TET +C++S+ + G++G+ + +++++D
Sbjct: 334 LLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIK--PGYMGTAASCYDVQIID-- 389
Query: 481 EMNYTSEDQPCPRGEICVR-GPL----IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
+ + P G+I +R P+ IF GY + +T I D W GD G+
Sbjct: 390 --DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDED 446
Query: 536 GRLKIIDR 543
G + + R
Sbjct: 447 GYFQFMGR 454
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 21/215 (9%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTR------VRVDGTVGEYKW--MTYGEAGTARTEV 126
H E+ + +D + D + G R V+G E W E V
Sbjct: 30 HQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANV 89
Query: 127 GSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186
SG G+ +G + + PEW +V C I +P + + Y + +
Sbjct: 90 LSGAC--GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA 147
Query: 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246
+A+ + + + + SE P++R+ +++ + L + LL++ S
Sbjct: 148 KAIVAGDEVIQEVDTVASECPSLRIKLLVSE----------KSCDGWLNFKKLLNEA-ST 196
Query: 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
+ + I +TSGT+G PK A S+ +L
Sbjct: 197 THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSL 231
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
L P+ L+ + G + E YG TET +C++S+ + G++G+ + +++++D
Sbjct: 334 LLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIK--PGYMGTAASCYDVQIID-- 389
Query: 481 EMNYTSEDQPCPRGEICVR-GPL----IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
+ + P G+I +R P+ IF GY + +T I D W GD G+
Sbjct: 390 --DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDED 446
Query: 536 GRLKIIDR 543
G + + R
Sbjct: 447 GYFQFMGR 454
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 425 PD-VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVD--- 478
PD VL+ + G YG TE S + Q G ++ P E+++V
Sbjct: 285 PDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMA-----PGFFSEVRIVRIGG 339
Query: 479 -VPEMNYTSEDQPCPRGEICVRGP-LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
V E+ E+ GE+ V F GY T E + +DGW+ T D+ +W P G
Sbjct: 340 GVDEIVANGEE-----GELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEG 393
Query: 537 RLKIIDR 543
++I+ R
Sbjct: 394 TVRILGR 400
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSC--LSEV-----PTVRLIVVIGGIDDQIPS 224
+ P++ ++ ++ + VP LN L L+E+ T +I V + D I
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI-- 117
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFS--PP------KPDDVATICYTSGTTGTPKGAVL 276
+G +I+ +L+ G +P+S PP +P A I YTSGTTG PK A++
Sbjct: 118 FQSGSGARIIFLGDLVRDG----EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAII 173
Query: 277 SHGNLIASV--AGATLGTKFYPSDVYISYLPLAHI 309
+ V +G + +V + +PL H+
Sbjct: 174 PQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 425 PD-VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVD--- 478
PD VL+ + G YG TE S + Q G ++ P E+++V
Sbjct: 285 PDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMA-----PGFFSEVRIVRIGG 339
Query: 479 -VPEMNYTSEDQPCPRGEICVRGP-LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
V E+ E+ GE+ V F GY T E + +DGW+ T D+ +W P G
Sbjct: 340 GVDEIVANGEE-----GELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEG 393
Query: 537 RLKIIDR 543
++I+ R
Sbjct: 394 TVRILGR 400
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSC--LSEV-----PTVRLIVVIGGIDDQIPS 224
+ P++ ++ ++ + VP LN L L+E+ T +I V + D I
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI-- 117
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFS--PP------KPDDVATICYTSGTTGTPKGAVL 276
+G +I+ +L+ G +P+S PP +P A I YTSGTTG PK A++
Sbjct: 118 FQSGSGARIIFLGDLVRDG----EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAII 173
Query: 277 SHGNLIASV--AGATLGTKFYPSDVYISYLPLAHI 309
+ V +G + +V + +PL H+
Sbjct: 174 PQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 425 PD-VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVD--- 478
PD VL+ + G YG TE S + Q G ++ P E+++V
Sbjct: 285 PDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMA-----PGFFSEVRIVRIGG 339
Query: 479 -VPEMNYTSEDQPCPRGEICVRGP-LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
V E+ E+ GE+ V F GY T E + +DGW+ T D+ +W P G
Sbjct: 340 GVDEIVANGEE-----GELIVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEG 393
Query: 537 RLKIIDR 543
++I+ R
Sbjct: 394 TVRILGR 400
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSC--LSEV-----PTVRLIVVIGGIDDQIPS 224
+ P++ ++ ++ + VP LN L L+E+ T +I V + D I
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI-- 117
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFS--PP------KPDDVATICYTSGTTGTPKGAVL 276
+G +I+ +L+ G +P+S PP +P A I YTSGTTG PK A++
Sbjct: 118 FQSGSGARIIFLGDLVRDG----EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAII 173
Query: 277 SHGNLIASV--AGATLGTKFYPSDVYISYLPLAHI 309
+ V +G + +V + +PL H+
Sbjct: 174 PQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 425 PD-VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD----V 479
PD VL+ + G YG TE + L +G +P E+++V V
Sbjct: 285 PDAVLETVHQHLPGEKVNIYGTTEAX---NSLYXRQPKTGTEXAPGFFSEVRIVRIGGGV 341
Query: 480 PEMNYTSEDQPCPRGEICVRGP-LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
E+ E+ GE+ V F GY T E + +DGW+ T D+ +W P G +
Sbjct: 342 DEIVANGEE-----GELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTV 395
Query: 539 KIIDR 543
+I+ R
Sbjct: 396 RILGR 400
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 23/155 (14%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSC--LSEV-----PTVRLIVVIGGIDDQIPS 224
+ P++ ++ ++ + VP LN L L+E+ T +I V + D I
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAI-- 117
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFS--PP------KPDDVATICYTSGTTGTPKGAVL 276
+G +I+ +L+ G +P+S PP +P A I YTSGTTG PK A++
Sbjct: 118 FQSGSGARIIFLGDLVRDG----EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAII 173
Query: 277 SHGNLIASV--AGATLGTKFYPSDVYISYLPLAHI 309
+ V +G + +V + PL H+
Sbjct: 174 PQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHV 208
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 222 IPSLPITT-GVQILTYSNLLSQGRSNLQPFS---PPKPDDVATICYTSGTTGTPKGAVLS 277
I P+T G+ +++ S + S + + P+ K DD I +TSGTTG PKG +S
Sbjct: 108 IEEFPLTIEGISLVSLSEIESAKLAEM-PYERTHSVKGDDNYYIIFTSGTTGQPKGVQIS 166
Query: 278 HGNLIA 283
H NL++
Sbjct: 167 HDNLLS 172
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 436 GGRVTEGYGMTETSCLISQLDEGDNLSGH-----VGSPNAACEIKLVDVPEMNYTSEDQP 490
++ YG TE + +S ++ + + +G P ++D +S +Q
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ- 348
Query: 491 CPRGEICVRGPLIFKGYYKDEIQTKEV---IDEDGWFHTGDIG------MWIPGGRL 538
GEI V GP + KGY + +T E +HTGDIG + + GGRL
Sbjct: 349 ---GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 112/310 (36%), Gaps = 60/310 (19%)
Query: 249 PFSPPKP----DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYL 304
P S +P D +A I ++SGTTG PK +H + G + F P ++
Sbjct: 153 PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSF-LAFAPQMRFLVNS 211
Query: 305 PLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364
PL+ ++ A + ++ + G +++D+ L P V R G A
Sbjct: 212 PLS--FDAAT--LEIWGALLNG-----GCCVLNDLGPLDPGVL--------RQLIGERGA 254
Query: 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLS 424
S L LFN L +P D LGG + + G
Sbjct: 255 --DSAWLTASLFNT---------LVDLDP-------------DCLGGLRQLLTGGDILSV 290
Query: 425 PDVLDFLKICFGGRVTEGYGMTE----TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
P V L + GYG TE T C + D+ + +G A + L+D
Sbjct: 291 PHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEH 350
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGW-------FHTGDIGMWI 533
D+ GEI G + +GY D +T+ E + + TGD +
Sbjct: 351 GQEIAEPDRA---GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407
Query: 534 PGGRLKIIDR 543
GRL+ I R
Sbjct: 408 EQGRLRFIGR 417
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
P+DVA + +TSG+TG PKG + H L + G F P +V++ P++
Sbjct: 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDY-AGFGPDEVFLQCSPVS 264
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 21/188 (11%)
Query: 114 MTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
+TY E +V L Y G+ KG + +Y PE +I A S I ++
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173
Query: 173 GPDAVKYIVNHASVQAVFC---------VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
++++ +N + V V +T + L E P VR ++V ++ P
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNN--P 231
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
S+ + L ++ + ++ P +P +D + YTSG+TG PKG + H
Sbjct: 232 SVAFH-APRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKG--VQH----- 282
Query: 284 SVAGATLG 291
S AG LG
Sbjct: 283 STAGYLLG 290
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
P+DVA + +TSG+TG PKG + H L + G F P +V++ P++
Sbjct: 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDY-AGFGPDEVFLQCSPVS 264
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 124/318 (38%), Gaps = 50/318 (15%)
Query: 231 VQILTYSNL----LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
V+I++ NL + + P K D+ I YTSG+TG PKG +++ L++
Sbjct: 115 VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTK 174
Query: 287 GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
A V+++ P + VM +Y + G G + DM A +
Sbjct: 175 WAVEDFNLQTGQVFLNQAPFSFDL----SVMDIYPSLVTG---GTLWAIDKDMIARPKDL 227
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
F S+ + +++ S L A+++ ++ML ++ N++
Sbjct: 228 FASLEQSDIQVWTSTPSFAEMC------LMEASFS---ESMLPNMKTFLFCGEVLPNEVA 278
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN-LSGHV 465
KL R F K + YG TE + ++ + + L +
Sbjct: 279 RKLIER-----------------FPK----ATIMNTYGPTEATVAVTGIHVTEEVLDQYK 317
Query: 466 GSPNAAC--EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE---VIDE 520
P C + +L+ + E + D +GEI + GP + GY T++ +ID
Sbjct: 318 SLPVGYCKSDCRLLIMKEDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDG 375
Query: 521 DGWFHTGDIGMWIPGGRL 538
+ + TGD G ++ G L
Sbjct: 376 ERAYKTGDAG-YVENGLL 392
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 124/318 (38%), Gaps = 50/318 (15%)
Query: 231 VQILTYSNL----LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
V+I++ NL + + P K D+ I YTSG+TG PKG +++ L++
Sbjct: 115 VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTK 174
Query: 287 GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
A V+++ P + VM +Y + G G + DM A +
Sbjct: 175 WAVEDFNLQTGQVFLNQAPFSFDL----SVMDIYPSLVTG---GTLWAIDKDMIARPKDL 227
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
F S+ + +++ S L A+++ ++ML ++ N++
Sbjct: 228 FASLEQSDIQVWTSTPSFAEMC------LMEASFS---ESMLPNMKTFLFCGEVLPNEVA 278
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN-LSGHV 465
KL R F K + YG TE + ++ + + L +
Sbjct: 279 RKLIER-----------------FPK----ATIMNTYGPTEATVAVTGIHVTEEVLDQYK 317
Query: 466 GSPNAAC--EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE---VIDE 520
P C + +L+ + E + D +GEI + GP + GY T++ +ID
Sbjct: 318 SLPVGYCKSDCRLLIMKEDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDG 375
Query: 521 DGWFHTGDIGMWIPGGRL 538
+ + TGD G ++ G L
Sbjct: 376 ERAYKTGDAG-YVENGLL 392
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 173 GPDAVKYIV------NHASVQAVFCVPQ---TLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
P ++Y+V + VPQ T S LS+ V ++ +DD +
Sbjct: 89 APQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148
Query: 224 SLPITTGVQ--ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
+ G + +LL N F + A + YTSG+T TP G V+SH N+
Sbjct: 149 HVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNV 208
Query: 282 IASVAGATLGTKFY--------PSDVYISYLPLAH 308
V L + ++ P+ +S+LP H
Sbjct: 209 --RVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 437 GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN---YTSEDQPCP- 492
++ YG TE + ++ ++ ++ V S + + + P+MN E QP P
Sbjct: 287 AKIFNTYGPTEATVAVTSVE----ITNDVISRSESLPVGFAK-PDMNIFIMDEEGQPLPE 341
Query: 493 --RGEICVRGPLIFKGYYKD-EIQTKEVIDEDG-W-FHTGDIGMWIPGGRL 538
+GEI + GP + +GY + E+ K +G W + TGD G +I G++
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG-FIQDGQI 391
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
+Q ++ LL ++ K + I YTSG+TG PKG +S NL
Sbjct: 118 IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANL 168
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
NL +Q S++ P D A + YTSG+TGTPKG +S NL
Sbjct: 159 NLSTQDTSDILNNYPENLD--AYLLYTSGSTGTPKGVRVSRHNL 200
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 173 GPDAVKYIV------NHASVQAVFCVPQ---TLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
P ++Y+V + VPQ T S LS+ V ++ +DD +
Sbjct: 89 APQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148
Query: 224 SLPITTGVQ--ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
+ G + +LL N F + A + YTSG+T TP G V SH N+
Sbjct: 149 HVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNV 208
Query: 282 IASVAGATLGTKFY--------PSDVYISYLPLAH 308
V L + ++ P+ +S+LP H
Sbjct: 209 --RVNFEQLXSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 23 SSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKL---VSRFP----DH 75
+ +SQ+ H+ T E ++G + L + L TG+++ +P L ++RF H
Sbjct: 75 NDASQIPHHRTITEAVHQEGGKIAL-QILHTGRYSYQPHLVAPSALQAPINRFVPHELSH 133
Query: 76 PEIGTTHDNFVRAVDTFRDYKYLGTRV 102
EI DNF R R+ Y G V
Sbjct: 134 EEILQLIDNFARCAQLAREAGYDGVEV 160
>pdb|3I83|A Chain A, Crystal Structure Of 2-dehydropantoate 2-reductase From
Methylococcus Capsulatus
pdb|3I83|B Chain B, Crystal Structure Of 2-dehydropantoate 2-reductase From
Methylococcus Capsulatus
Length = 320
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 40 EQGYSVVLPEKLDTGKWN--VYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAV 89
E G + E + T +W V+ ++ +PL ++S D +I +T + FVRA+
Sbjct: 170 EAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAI 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,577,404
Number of Sequences: 62578
Number of extensions: 791230
Number of successful extensions: 1942
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1785
Number of HSP's gapped (non-prelim): 109
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)