Query 009114
Match_columns 543
No_of_seqs 277 out of 2768
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:08:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 100.0 1.4E-65 4.7E-70 552.4 42.2 409 77-543 18-437 (550)
2 1v25_A Long-chain-fatty-acid-C 100.0 1.6E-64 5.4E-69 543.0 43.8 401 79-543 18-433 (541)
3 3ni2_A 4-coumarate:COA ligase; 100.0 3.6E-65 1.2E-69 547.5 38.2 402 76-543 19-432 (536)
4 3g7s_A Long-chain-fatty-acid-- 100.0 3E-64 1E-68 541.9 40.8 405 77-543 17-437 (549)
5 2d1s_A Luciferase, luciferin 4 100.0 6.1E-64 2.1E-68 539.0 41.2 404 77-543 23-439 (548)
6 3o83_A Peptide arylation enzym 100.0 6.6E-64 2.2E-68 538.5 39.0 400 77-543 28-437 (544)
7 3etc_A AMP-binding protein; ad 100.0 1.5E-63 5.2E-68 538.8 41.7 405 77-543 54-473 (580)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 8.4E-64 2.9E-68 537.1 34.8 395 78-543 24-428 (539)
9 3t5a_A Long-chain-fatty-acid-- 100.0 6.1E-64 2.1E-68 531.1 32.0 400 77-543 22-480 (480)
10 3r44_A Fatty acyl COA syntheta 100.0 2.4E-63 8.2E-68 530.8 36.7 397 75-543 12-411 (517)
11 3c5e_A Acyl-coenzyme A synthet 100.0 2.1E-62 7.1E-67 529.1 42.5 402 77-543 36-454 (570)
12 4fuq_A Malonyl COA synthetase; 100.0 3E-63 1E-67 528.3 35.2 392 83-543 4-397 (503)
13 3ivr_A Putative long-chain-fat 100.0 1.5E-62 5.1E-67 524.1 37.2 390 78-543 5-396 (509)
14 1pg4_A Acetyl-COA synthetase; 100.0 1.9E-62 6.6E-67 537.4 38.7 416 76-543 73-515 (652)
15 1ry2_A Acetyl-coenzyme A synth 100.0 3E-62 1E-66 536.2 38.9 419 75-543 78-524 (663)
16 2v7b_A Benzoate-coenzyme A lig 100.0 8.7E-62 3E-66 520.7 38.3 401 77-543 22-427 (529)
17 1t5h_X 4-chlorobenzoyl COA lig 100.0 9.2E-62 3.1E-66 517.3 37.6 386 79-543 2-400 (504)
18 4gr5_A Non-ribosomal peptide s 100.0 9E-62 3.1E-66 524.8 37.9 380 76-543 72-467 (570)
19 3tsy_A Fusion protein 4-coumar 100.0 9.7E-62 3.3E-66 555.8 38.8 409 75-543 57-479 (979)
20 1amu_A GRSA, gramicidin synthe 100.0 4.3E-61 1.5E-65 518.1 36.5 380 76-543 36-428 (563)
21 3fce_A D-alanine--poly(phospho 100.0 6.2E-61 2.1E-65 512.0 34.0 383 79-543 1-397 (512)
22 3rg2_A Enterobactin synthase c 100.0 1.6E-60 5.5E-65 519.6 37.1 398 77-543 25-432 (617)
23 3e7w_A D-alanine--poly(phospho 100.0 2.3E-60 8E-65 507.3 35.7 382 79-543 1-396 (511)
24 3l8c_A D-alanine--poly(phospho 100.0 9.9E-61 3.4E-65 511.6 32.6 382 78-543 3-401 (521)
25 4dg8_A PA1221; ANL superfamily 100.0 1.2E-60 4.2E-65 519.2 33.3 378 76-543 24-417 (620)
26 3kxw_A Saframycin MX1 syntheta 100.0 3.8E-60 1.3E-64 514.9 34.8 397 77-543 9-456 (590)
27 3gqw_A Fatty acid AMP ligase; 100.0 7.8E-59 2.7E-63 503.1 37.4 395 75-543 17-459 (576)
28 3ipl_A 2-succinylbenzoate--COA 100.0 5.6E-60 1.9E-64 503.3 27.4 391 80-543 2-396 (501)
29 3nyq_A Malonyl-COA ligase; A/B 100.0 7.2E-60 2.5E-64 502.3 25.6 381 77-543 20-403 (505)
30 3ite_A SIDN siderophore synthe 100.0 4.9E-59 1.7E-63 503.0 32.2 395 76-543 17-425 (562)
31 2vsq_A Surfactin synthetase su 100.0 2.6E-56 9E-61 523.4 40.2 382 78-543 463-859 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 6E-37 2.1E-41 310.9 12.9 213 255-543 36-248 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.7E-35 1.6E-39 305.6 19.8 250 232-543 64-329 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1.2E-34 4.1E-39 302.6 20.9 251 232-543 69-331 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 2.6E-34 8.9E-39 300.6 19.8 251 232-543 71-333 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 8.3E-31 2.8E-35 267.4 15.8 225 253-528 88-350 (369)
37 4b2g_A GH3-1 auxin conjugating 97.5 0.0021 7.2E-08 67.8 16.3 31 253-283 96-127 (609)
38 4eql_A 4-substituted benzoates 97.3 0.0014 4.9E-08 68.8 12.0 109 413-543 302-423 (581)
39 4epl_A Jasmonic acid-amido syn 97.0 0.0062 2.1E-07 63.9 13.5 53 231-283 71-126 (581)
40 2y4o_A Phenylacetate-coenzyme 91.8 2 6.7E-05 43.5 13.6 122 93-217 91-222 (443)
41 3qov_A Phenylacetate-coenzyme 90.7 1.6 5.6E-05 44.0 11.7 112 105-217 95-216 (436)
42 2y27_A Phenylacetate-coenzyme 90.7 1.9 6.5E-05 43.5 12.2 122 93-217 89-220 (437)
43 1mdb_A 2,3-dihydroxybenzoate-A 75.6 47 0.0016 34.2 14.9 120 92-217 180-308 (539)
44 2d1s_A Luciferase, luciferin 4 72.9 23 0.00078 36.7 11.7 119 94-216 192-318 (548)
45 3hgu_A EHPF; phenazine, antibi 71.2 19 0.00064 35.0 10.0 105 93-201 90-221 (369)
46 3o83_A Peptide arylation enzym 68.6 47 0.0016 34.2 12.9 119 93-217 190-317 (544)
47 1t5h_X 4-chlorobenzoyl COA lig 67.5 36 0.0012 34.7 11.7 120 92-217 151-282 (504)
48 3ipl_A 2-succinylbenzoate--COA 67.5 58 0.002 33.0 13.3 119 92-216 161-283 (501)
49 3r44_A Fatty acyl COA syntheta 67.0 65 0.0022 32.9 13.5 118 93-217 169-294 (517)
50 3e7w_A D-alanine--poly(phospho 66.1 55 0.0019 33.3 12.8 120 93-217 142-270 (511)
51 3fce_A D-alanine--poly(phospho 65.3 36 0.0012 34.7 11.1 120 93-217 143-271 (512)
52 1v25_A Long-chain-fatty-acid-C 63.1 45 0.0016 34.3 11.5 121 93-216 175-302 (541)
53 4gs5_A Acyl-COA synthetase (AM 63.1 31 0.0011 33.4 9.6 119 90-216 33-157 (358)
54 3rix_A Luciferase, luciferin 4 62.9 48 0.0016 34.2 11.6 121 94-217 190-317 (550)
55 3ivr_A Putative long-chain-fat 61.9 1.4E+02 0.0046 30.2 14.8 118 92-216 158-281 (509)
56 1pg4_A Acetyl-COA synthetase; 61.6 48 0.0016 35.1 11.6 121 93-217 255-388 (652)
57 3rg2_A Enterobactin synthase c 61.6 1.1E+02 0.0038 31.9 14.4 119 93-217 183-312 (617)
58 3c5e_A Acyl-coenzyme A synthet 61.0 56 0.0019 33.9 11.8 120 93-217 205-332 (570)
59 1ry2_A Acetyl-coenzyme A synth 56.3 58 0.002 34.6 11.0 121 93-217 261-394 (663)
60 4dg8_A PA1221; ANL superfamily 54.2 71 0.0024 33.6 11.2 120 92-217 162-286 (620)
61 3g7s_A Long-chain-fatty-acid-- 54.2 97 0.0033 31.8 12.2 103 254-359 32-140 (549)
62 3ni2_A 4-coumarate:COA ligase; 54.2 69 0.0024 32.8 11.0 98 254-359 35-137 (536)
63 3kxw_A Saframycin MX1 syntheta 53.4 76 0.0026 32.9 11.3 121 92-217 165-299 (590)
64 3ite_A SIDN siderophore synthe 53.2 66 0.0022 33.2 10.7 113 105-217 184-304 (562)
65 3etc_A AMP-binding protein; ad 51.7 73 0.0025 33.1 10.8 120 93-217 224-351 (580)
66 3t5a_A Long-chain-fatty-acid-- 49.9 1.4E+02 0.0049 29.6 12.5 104 254-359 37-148 (480)
67 4gr5_A Non-ribosomal peptide s 49.8 78 0.0027 32.7 10.6 120 92-217 212-336 (570)
68 3nyq_A Malonyl-COA ligase; A/B 44.9 1.1E+02 0.0038 31.0 10.7 103 92-201 153-259 (505)
69 2v7b_A Benzoate-coenzyme A lig 43.5 1.1E+02 0.0036 31.3 10.3 95 254-358 36-135 (529)
70 1amu_A GRSA, gramicidin synthe 41.0 1.7E+02 0.0059 30.0 11.6 92 254-355 52-148 (563)
71 3ist_A Glutamate racemase; str 36.7 96 0.0033 28.7 7.8 92 84-186 20-111 (269)
72 4h1h_A LMO1638 protein; MCCF-l 34.4 1E+02 0.0035 29.4 7.8 60 134-193 8-86 (327)
73 4fuq_A Malonyl COA synthetase; 33.0 1.9E+02 0.0066 29.1 10.2 82 275-357 28-114 (503)
74 3tsy_A Fusion protein 4-coumar 32.1 1.2E+02 0.004 33.9 9.0 95 254-357 74-174 (979)
75 3sr3_A Microcin immunity prote 30.7 1.3E+02 0.0043 28.9 7.7 60 134-193 9-87 (336)
76 3tbh_A O-acetyl serine sulfhyd 30.4 1.5E+02 0.0053 28.2 8.4 65 130-194 62-127 (334)
77 3ffh_A Histidinol-phosphate am 30.2 3.5E+02 0.012 25.3 11.8 79 135-218 105-195 (363)
78 2jgn_A DBX, DDX3, ATP-dependen 29.4 2.6E+02 0.0089 23.7 9.4 89 122-217 32-123 (185)
79 3tla_A MCCF; serine protease, 28.1 1.3E+02 0.0045 29.3 7.4 60 134-193 39-117 (371)
80 4e5s_A MCCFLIKE protein (BA_56 27.8 1.4E+02 0.0049 28.5 7.5 60 134-193 8-86 (331)
81 3ezx_A MMCP 1, monomethylamine 27.5 1.9E+02 0.0066 25.5 7.9 52 298-349 94-149 (215)
82 2vsq_A Surfactin synthetase su 26.0 2E+02 0.0067 33.3 9.7 120 92-217 605-730 (1304)
83 3l8c_A D-alanine--poly(phospho 26.0 2.4E+02 0.0083 28.4 9.6 77 274-352 28-110 (521)
84 2rb4_A ATP-dependent RNA helic 25.9 2.8E+02 0.0097 23.0 10.3 88 122-217 21-111 (175)
85 1t5i_A C_terminal domain of A 25.6 2.9E+02 0.0099 22.9 8.6 88 122-217 18-108 (172)
86 3ju7_A Putative PLP-dependent 24.3 1.9E+02 0.0064 27.9 7.9 61 129-192 69-136 (377)
87 2hjv_A ATP-dependent RNA helic 22.4 3.2E+02 0.011 22.3 8.7 87 123-217 23-112 (163)
88 3gqw_A Fatty acid AMP ligase; 22.3 4.9E+02 0.017 26.3 11.2 85 273-358 47-143 (576)
89 2c45_A Aspartate 1-decarboxyla 21.6 1E+02 0.0034 25.1 4.1 34 468-502 38-75 (139)
90 2gzm_A Glutamate racemase; enz 21.0 4.7E+02 0.016 23.7 10.1 77 84-167 18-94 (267)
91 3euc_A Histidinol-phosphate am 21.0 2.4E+02 0.0081 26.6 7.9 55 135-192 106-164 (367)
92 1fuk_A Eukaryotic initiation f 20.8 3.5E+02 0.012 22.1 9.3 86 124-217 19-107 (165)
93 3vc3_A Beta-cyanoalnine syntha 20.2 2.4E+02 0.0082 26.9 7.6 63 132-194 79-142 (344)
94 3oug_A Aspartate 1-decarboxyla 20.1 71 0.0024 25.0 2.8 34 468-502 41-78 (114)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.4e-65 Score=552.44 Aligned_cols=409 Identities=23% Similarity=0.344 Sum_probs=345.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|.+.++++||++++.... ++.. .+.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 35899999999999999999975321 3211 2569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|+++||+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.++...+. ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888877777878888887653211 123556
Q ss_pred HHHHhcCccC------CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChH
Q 009114 237 SNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (543)
Q Consensus 237 ~~l~~~~~~~------~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lpl~ 307 (543)
.++....... ..+.....++|+++|+|||||||.||||++||++++..+...... ..+.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 6665433221 111222346889999999999999999999999999887766554 5678999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998865210
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCc-cccccChhhhccccccCCCCCCCCCCc
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-i~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (543)
......+++|.+++||+++++++.+.+++.|++. ++++||+||+++.++.....+...+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998887777767778999
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|.|+++++++|+|++++..++.++ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 437 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR 437 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC--
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEec
Confidence 999999999999987888888776 899999999999999999999999999999999999999999999999998
No 2
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.6e-64 Score=542.97 Aligned_cols=401 Identities=25% Similarity=0.329 Sum_probs=339.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.++|++.++++||++|+.+. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 68999999999999999999764 22 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|+++||+++.++.+++.++++++++++||++.+..+.+......++.++.++.+++... .....|++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 162 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP----------EGYLAYEE 162 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC----------TTCEEHHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC----------cccccHHH
Confidence 99999999999999999999999999999999999888777776666677777777654321 02346777
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhh--hcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
+...... .....++|+++|+|||||||.||||++||++++...... ...+.++++|++++++|++|.+++...+
T Consensus 163 ~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (541)
T 1v25_A 163 ALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 238 (541)
T ss_dssp HCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHH
T ss_pred HhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHH
Confidence 6543221 134567899999999999999999999999998776653 2346788999999999999999997778
Q ss_pred HHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 317 ~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
.+++.|+++++.+ .++..+++.++++++|+++++|+++..+.+......
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------- 289 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------------- 289 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----------------------------
Confidence 8899999999986 599999999999999999999999999876432110
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-----------CCCC
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (543)
...+++|.+++||+++++++.+.+ +.++++++++||+||++.+++...... ...+
T Consensus 290 -------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (541)
T 1v25_A 290 -------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355 (541)
T ss_dssp -------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred -------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence 111589999999999999999999 567999999999999987766543321 1347
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+++++++|+| ++++.++.+. .+.|||+|+||+++.|||++|++|+++|..||||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~p~~~~~~~i~d-~~g~~~~~~~-~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR 433 (541)
T 1v25_A 356 KTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433 (541)
T ss_dssp SCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCCcCCCcEEEEEC-CCCCCCCCCC-CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeec
Confidence 899999999999999 5666655321 02799999999999999999999999998899999999999999999999998
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.6e-65 Score=547.46 Aligned_cols=402 Identities=26% Similarity=0.390 Sum_probs=341.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|++++|.+.++++||++|+.+. +.. +.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 35689999999999999999999664 221 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.+++++++++++|++....+.+.+..... .++ ++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988777766554322 233 44444321 12356
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~~ 311 (543)
++++...... ..+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|+++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 7777654433 23344567899999999999999999999999999988766543 356789999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 976 567899999999987 799999999999999999999999998765200
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccC-----CCCCCCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (543)
......+++|.+++||+++++++.+.+++.| +++++++||+||++.+++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0011125899999999999999999999998 89999999999998665432 23345678
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+++++++|+|+++++.++.++ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999987788888887 899999999999999999999999999999999999999999999999998
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3e-64 Score=541.87 Aligned_cols=405 Identities=24% Similarity=0.341 Sum_probs=347.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecC--cccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDG--TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
...|+.++|++.++++||++|+.+. ++ ..+..+++||+||.++++++|++|.++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 3579999999999999999999886 42 123446799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++|||++.++.+++.++++++++++||++....+.+.......+ ++.+++.+. ...
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGG--------------EVN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETC--------------SSS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCC--------------CCc
Confidence 99999999999999999999999999999999999999988887777665544 555666543 124
Q ss_pred eHHHHHhcCccCCCCCCCCCC-CCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 009114 235 TYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~-~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
+++++...+.... +.....+ +|+++|+|||||||.||||++||+++++.+......+.+.++|++++++|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5777766544322 2223344 8999999999999999999999999999988877778899999999999999999998
Q ss_pred HHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 314 ~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
..+.++..|+++++.+ +++..+++.++++++|+++++|+++..+.+........
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------- 292 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------------------- 292 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-------------------------
Confidence 8778899999999887 79999999999999999999999999987743221000
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh----hC---CccccccChhhhccccccCCCCC-CCCCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGH 464 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~----~~---~~i~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (543)
...+++|.+++||+++++++.+.+++. ++ ++++++||+||++.+++...... ...++
T Consensus 293 ---------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 293 ---------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp ---------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred ---------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 011589999999999999999999887 66 88999999999988777655433 55688
Q ss_pred cCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC--CCC--eeeccceEEEecCCcEEE
Q 009114 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 465 vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~--~~g--w~~TGDig~~~~~G~l~i 540 (543)
+|.|+++++++|+|+++++.++.|+ .|||||+|+++++|||++|+.|++.|. .+| ||+|||+|++|+||+|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999988888888887 899999999999999999999999983 677 999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 435 ~GR 437 (549)
T 3g7s_A 435 QDR 437 (549)
T ss_dssp EEE
T ss_pred ecc
Confidence 998
No 5
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6.1e-64 Score=539.05 Aligned_cols=404 Identities=24% Similarity=0.330 Sum_probs=339.3
Q ss_pred CCCCHHH-HHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~-~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...|+.+ +|.+.++++ |++|+.+. +. .+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999653 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.++++++++++||++.+..+.+......++....++.++.... .. .+..
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999999888777665545554556666554210 00 2345
Q ss_pred HHHHHhcCccCCCCCCCCC-----C-CCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCCh
Q 009114 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~-----~-~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lpl 306 (543)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++++.+...... +.+.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 7777654322101111122 4 899999999999999999999999999888776665 678899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 307 AHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
+|.+++... +.++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 999999874 4556 999999887 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 463 (543)
......+++|.+++||+++++++.+.+++.| ++.++++||+||++..++.........+
T Consensus 303 --------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 --------------------LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp --------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred --------------------cccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0001125899999999999999999999999 6889999999999877666544456678
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+++++++|+|+++++.++.|+ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999987888888776 899999999999999999999999998899999999999999999999998
No 6
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=6.6e-64 Score=538.50 Aligned_cols=400 Identities=18% Similarity=0.228 Sum_probs=337.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999653 1 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
||+++|+++||+++.++.+++.+++++++++++|++.... ..+..........+.++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 233333334455566666654211
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~ 311 (543)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555554443333335567899999999999999999999999999999988887788999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
+.. .+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 885 677899999999987 799999999999999999999999998876421100
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-CCCCCcCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (543)
...+++|.+++||+++++++.+.+++.++++++++||+||++..++.....+ ...+++|+
T Consensus 304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0015899999999999999999999999999999999999875544332221 23468999
Q ss_pred CC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+ ++++++|+| ++++.++.|+ .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR 437 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGR 437 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEE
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEee
Confidence 96 899999999 7778888776 899999999999999999999999999999999999999999999999998
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.5e-63 Score=538.84 Aligned_cols=405 Identities=19% Similarity=0.257 Sum_probs=343.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+..+++|++.++++||++|+.+. +.. +..+.+||+||.++++++|++|+++|+++||+|+|+++|++||+++++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4566679999999999999999876 332 345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH--HHHHhhccCCCCe-eEEEEeCCCCCCCCCCCcCCCcee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQI 233 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~--~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~ 233 (543)
||+++|+++||+++.++++++.++++++++++||++.+.. +.+.+....++.+ ..++.++... ....
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 199 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEGW 199 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTTC
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------cccc
Confidence 9999999999999999999999999999999999988754 5555554444544 4555554321 1134
Q ss_pred eeHHHHHhcCccCCCCC---CCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHH
Q 009114 234 LTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (543)
Q Consensus 234 ~~~~~l~~~~~~~~~~~---~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~ 310 (543)
..+.+...........+ ....++|+++|+|||||||.||||+++|.+++..+........+.++|++++.+|+.|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence 66777665443322212 246789999999999999999999999999988877766667889999999999999998
Q ss_pred HHHH-HHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 311 ERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
+.+. .+.++..|+++++++ +++..+++.|+++++|+++++|+++..+.+..
T Consensus 280 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------- 334 (580)
T 3etc_A 280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------- 334 (580)
T ss_dssp HHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-------------------------
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-------------------------
Confidence 8876 567899999998873 79999999999999999999999998875420
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcC
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (543)
......+++|.+++||+++++++.+.+++.+|++++++||+||++..++.....+...+++|
T Consensus 335 ------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G 396 (580)
T 3etc_A 335 ------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIG 396 (580)
T ss_dssp ------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCB
T ss_pred ------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccc
Confidence 00111258999999999999999999999999999999999999877766655667789999
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC-----ccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEe
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g-----~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~ 541 (543)
+|+|+++++|+| ++++.++.|+ .|||||+| +++++|||++|+.|+++| .+|||+|||+|++|+||+|+|+
T Consensus 397 ~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~ 471 (580)
T 3etc_A 397 KPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471 (580)
T ss_dssp EECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEE
Confidence 999999999999 6677777776 89999997 789999999999999999 6999999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 472 GR 473 (580)
T 3etc_A 472 GR 473 (580)
T ss_dssp EE
T ss_pred ec
Confidence 98
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=8.4e-64 Score=537.07 Aligned_cols=395 Identities=21% Similarity=0.266 Sum_probs=329.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 479999999999999999999653 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+.......+.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 22223333445566566544311
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
.|.++..... .+.+.....++|+++|+|||||||.||||++||+++++.+......+.++++|++++++|++|.+++
T Consensus 162 --~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 0111211111 1122334678999999999999999999999999999988877777788999999999999999999
Q ss_pred HH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 313 ~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 85 677899999999987 79999999999999999999999999887642110
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-CCCCCCCcCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSP 468 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p 468 (543)
....+++|.+++||+++++++.+.+++.++++++++||+||++..++.... .+...+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 001158999999999999999999999999999999999996543332111 11234789999
Q ss_pred CCC-eEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~~~-~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++ .+++|+| ++++.++.|+ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR 428 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGR 428 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEecc
Confidence 975 5899999 6677777776 899999999999999999999999998899999999999999999999998
No 9
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.1e-64 Score=531.11 Aligned_cols=400 Identities=18% Similarity=0.217 Sum_probs=319.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++|+.+....++..++.+.+||+||.++++++|++|+++|+ +||+|+|+++|++||+++++
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 45899999999999999999998861111334556789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCe--eEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~---~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
||+++|+++|||++ .++.+++.++++++++++||++.+..+.+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999999888777665443322 1333332211
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCC------CcEEEEeCC
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~------~d~~l~~lp 305 (543)
. ......+.....++|+++|+|||||||.||||++||+++++.+......+.+.. +|++++++|
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 0 001112334467899999999999999999999999999988877766666666 999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 009114 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (543)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a 379 (543)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++| +..+|.++..+.......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999876 577899999999986 3899999999999999 889999988876531100
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC------CccccccChhhhccccc
Q 009114 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (543)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~ 453 (543)
........++||.+++||+++++++.+.+++.|+ +.++++||+||++..++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0011112268999999999999999999999884 36999999999988776
Q ss_pred cCCCCC-------------------------CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhc
Q 009114 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (543)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~ 508 (543)
...... ...+++|+|++ ++++|+|.++++.++.++ .|||||+|++|++|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654332 23358999999 999999976677788776 8999999999999999
Q ss_pred CChhhhhhhcC-----------CCCeeeccceEEEecCCcEEEecC
Q 009114 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|++|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999999
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.4e-63 Score=530.85 Aligned_cols=397 Identities=19% Similarity=0.248 Sum_probs=331.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.+...|+.++|++.++++||++|+.+. +. .+.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 346789999999999999999999764 22 25699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+....++.+. ...
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI---------------GAD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE---------------EHH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc---------------Ccc
Confidence 99999999999999999999999999999999999999888777666544333221111110 012
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 009114 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 24444432222 23344567899999999999999999999999999999888877788999999999999999999988
Q ss_pred HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
.+.+++.|+++++.+ +++..+++.++++++|++.++|++++.+.+...
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 277 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE------------------------------- 277 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH-------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------------------------
Confidence 666666999999887 799999999999999999999999998866311
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCCCCCcCCCCCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (543)
......+++|.+++||+++++++.+.++.. +++++++||+||+++.++..... ....+++|.|.++
T Consensus 278 -----------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 278 -----------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp -----------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred -----------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 111223689999999999999999999987 89999999999998766544332 3567899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 472 ~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++|+| +++...+.+ .|||+|+|+++++|||++|+.|++.| .+|||+|||+|++|+||+|+|+||
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR 411 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDR 411 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEC
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecC
Confidence 9999999 455444433 59999999999999999999999999 799999999999999999999999
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.1e-62 Score=529.11 Aligned_cols=402 Identities=18% Similarity=0.237 Sum_probs=342.2
Q ss_pred CCCCHHHHHHHHHHh-----cCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChh
Q 009114 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~e 150 (543)
..+++.++|++.+++ +||++|+.+. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 356778999999999 9999999875 422 2346799999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCC
Q 009114 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (543)
Q Consensus 151 ~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (543)
|+++++||+++|+++||+++.++.+++.++++++++++||++.+..+.+......++.++.++.+++...
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 181 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC---------- 181 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC----------
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc----------
Confidence 9999999999999999999999999999999999999999999888877776666777777777654210
Q ss_pred ceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHH--HHHhhhcCcccCCCcEEEEeCChHH
Q 009114 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~--~~~~~~~~~~~~~~d~~l~~lpl~h 308 (543)
.....++++...... ..+.....++|+++|+|||||||.||||++||+ ++. ..... ..+.+.++|++++++|++|
T Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 182 DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 013467777654332 122344678999999999999999999999999 544 33333 5577889999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+. .
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~----------------- 315 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------D----------------- 315 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS------C-----------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc------c-----------------
Confidence 999885 677899999999885 6999999999999999999999999988652 0
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (543)
......+++|.+++||+++++++.+.+++.++++++++||+||++..++.........++
T Consensus 316 --------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 316 --------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp --------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred --------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 000012589999999999999999999998999999999999998766655444566789
Q ss_pred cCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEe-----CccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEE
Q 009114 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 465 vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~-----g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~ 539 (543)
+|.|+++++++|+| ++++.++.|+ .|||||+ |+++++|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6678888776 8999999 9999999999999999999 58999999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 451 ~~GR 454 (570)
T 3c5e_A 451 FMGR 454 (570)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9998
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3e-63 Score=528.30 Aligned_cols=392 Identities=28% Similarity=0.383 Sum_probs=327.0
Q ss_pred HHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcC
Q 009114 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (543)
Q Consensus 83 ~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G 162 (543)
++|++.++++||++++... +.. -+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4688999999999999764 111 1469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhc
Q 009114 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (543)
Q Consensus 163 ~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (543)
+++||+++.++.+++.+++++++++++|++.+..+.+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544433322221 2333332110 122222222
Q ss_pred CccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHh
Q 009114 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (543)
Q Consensus 243 ~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~~~~l~~ 321 (543)
. ....+.....++|+++|+|||||||.||||++||+++.+.+......+.++++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999888887788999999999999999999765 5678899
Q ss_pred CcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 009114 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (543)
Q Consensus 322 G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~ 400 (543)
|+++++.+ +++..+++.++ ++|+++++|+++..+.+...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99999887 69999999997 89999999999998865200
Q ss_pred hHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecC
Q 009114 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (543)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~ 480 (543)
......+++|.+++||+++++++.+.++..+++++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987766544455667899999999999999988
Q ss_pred CCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 481 ~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++.++.|+ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 397 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGR 397 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCS
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEec
Confidence 888888887 899999999999999999999999998899999999999999999999998
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.5e-62 Score=524.07 Aligned_cols=390 Identities=21% Similarity=0.286 Sum_probs=330.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 75 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGA 75 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 479999999999999999999663 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.+++... .+.
T Consensus 76 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 141 (509)
T 3ivr_A 76 VALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PFA 141 (509)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SCE
T ss_pred HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Chh
Confidence 999999999999999999999999999999999999988876666667777777777754221 122
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
++.........+.....++|+++|+|||||||.||||++||+++++.+......+.++++|++++++|++|.+++...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 142 PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221 (509)
T ss_dssp EGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence 22221222223344567899999999999999999999999999999888887889999999999999999999988776
Q ss_pred HHH-hCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCch
Q 009114 318 TVY-SGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (543)
Q Consensus 318 ~l~-~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (543)
++. .|+.+++..+++..+++.++++++|+++++|+++..+.+.. .
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-----~----------------------------- 267 (509)
T 3ivr_A 222 LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA-----A----------------------------- 267 (509)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC-----C-----------------------------
T ss_pred HHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc-----c-----------------------------
Confidence 544 45555544589999999999999999999999999987631 0
Q ss_pred hhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEE
Q 009114 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (543)
Q Consensus 397 ~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evk 475 (543)
....+++|.+++||++ ++.+.++..+ ++++++.||+||++++++..... ....++|.|+++++++
T Consensus 268 ----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~~ 333 (509)
T 3ivr_A 268 ----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTVA 333 (509)
T ss_dssp ----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEEE
T ss_pred ----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEEE
Confidence 0011589999999988 8888888888 89999999999998776654332 2335599999999999
Q ss_pred EeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||
T Consensus 334 i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR 396 (509)
T 3ivr_A 334 VVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGR 396 (509)
T ss_dssp EEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEE
T ss_pred EEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCC
Confidence 999 6677777776 89999999999999999999999999 599999999999999999999998
No 14
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.9e-62 Score=537.36 Aligned_cols=416 Identities=18% Similarity=0.253 Sum_probs=340.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...++++++|++.++++||++|+.+. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34678999999999999999999875 333345578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH---------HHHHhhccCC--CCeeEEEEeCCCCCCCCC
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEV--PTVRLIVVIGGIDDQIPS 224 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~--~~l~~ii~~~~~~~~~~~ 224 (543)
+||+++|+++||+++.++++++.++++++++++||+++... +.+.+..... +.++.+++++.......
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~- 228 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID- 228 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence 99999999999999999999999999999999999987532 2333333333 24667777764321110
Q ss_pred CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHH-hhhcCcccCCCcEEEEe
Q 009114 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (543)
. .......|++++..... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 229 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 229 W---QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp C---CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred c---cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 0 01123678888764332 1233445689999999999999999999999999877653 33444788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 377 (543)
+|++|+++... .+.+++.|++++++++ ++..+++.++++++|+++++|+++..+.+.....
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 371 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA------------- 371 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG-------------
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc-------------
Confidence 99999999854 6789999999999873 7899999999999999999999999886521100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhcccccc
Q 009114 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 378 ~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~ 454 (543)
.+....+++|.+++||+++++++.+++++.+| ++++++||+||+++.++.
T Consensus 372 ---------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 372 ---------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp ---------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred ---------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence 00111268999999999999999999999988 899999999999876665
Q ss_pred CCCC--CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC--ccchhhhcCChhhhhhhcC--CCCeeeccc
Q 009114 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (543)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TGD 528 (543)
..+. ....+++|+|+++++++|+| ++++.++.++ .|||+|+| |++++|||++|+.|.+.|. .+|||+|||
T Consensus 425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 5432 35678999999999999999 5677666665 89999999 7999999999999998862 489999999
Q ss_pred eEEEecCCcEEEecC
Q 009114 529 IGMWIPGGRLKIIDR 543 (543)
Q Consensus 529 ig~~~~~G~l~i~gR 543 (543)
+|++|+||+|+|+||
T Consensus 501 lg~~d~dG~l~i~GR 515 (652)
T 1pg4_A 501 GARRDEDGYYWITGR 515 (652)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEec
Confidence 999999999999998
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3e-62 Score=536.15 Aligned_cols=419 Identities=18% Similarity=0.220 Sum_probs=342.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLI 153 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~e~~i 153 (543)
....++++++|++.++++||++|+.+. +...+..+.+||+||.++++++|++|+ ++|+++||+|+|+++|++||++
T Consensus 78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~ 154 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154 (663)
T ss_dssp TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence 445689999999999999999999875 333344578999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH---------HHHHhhccCCCCeeEEEEeCCCCCCCCC
Q 009114 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPS 224 (543)
Q Consensus 154 ~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 224 (543)
+++||+++|++++|+++.++++++.++|+++++++||+++... +.+.+....++.++.+++++........
T Consensus 155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999987642 2344445555667778877653210000
Q ss_pred CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHH-hhhcCcccCCCcEEEEe
Q 009114 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (543)
. .......|+++...... ..+..+..++|+++|+|||||||.||||++||++++..+. .....+.+.++|+++++
T Consensus 235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01124678887764322 2333456789999999999999999999999999876654 33344788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 377 (543)
+|++|+++... .+.+++.|++++++++ ++..+++.|+++++|+++++|+++..+.+...
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------- 375 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------- 375 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc---------------
Confidence 99999999854 6789999999999873 78899999999999999999999987754100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhcccccc
Q 009114 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 378 ~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~ 454 (543)
.. .+....+++|.+++||+|+++++.+++++.+| +++++.||+||+++.++.
T Consensus 376 --------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 376 --------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp --------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred --------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence 00 00011268999999999999999999999998 899999999999876665
Q ss_pred CCC---CCCCCCCcCCCCCCeEEEEeecCCCCCCCC-CCCCCCceEEEeC--ccchhhhcCChhhhhhhcC--CCCeeec
Q 009114 455 LDE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (543)
Q Consensus 455 ~~~---~~~~~~~vG~p~~~~evkivd~~~~~~~~~-~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~T 526 (543)
..+ .....+++|.|+++++++|+|.++++.++. ++ .|||+|+| |++++|||++|+.|.+.|. .+|||+|
T Consensus 431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 433 235678999999999999999546766655 54 79999999 5899999999999999874 3899999
Q ss_pred cceEEEecCCcEEEecC
Q 009114 527 GDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 527 GDig~~~~~G~l~i~gR 543 (543)
||+|++|+||+|+|+||
T Consensus 508 GDlg~~d~dG~l~i~GR 524 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGR 524 (663)
T ss_dssp EEEEEECTTCCEEECSC
T ss_pred CCEEEEcCCCCEEEEee
Confidence 99999999999999999
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=8.7e-62 Score=520.65 Aligned_cols=401 Identities=20% Similarity=0.252 Sum_probs=329.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+++.++|++.++ +||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34569999999999 9999999653 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCe-eEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
||+++|+++||+++.++++++.+++++++++++|++.+..+.+.......+.+ +.+++++.... .+.....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988777666554444444 45555543211 0111235
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHH-HHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
|+++...... ..+.....++|+++|+|||||||.||||++||+++ ..........+.+.++|++++++|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 7777653322 12233467899999999999999999999999999 666655555578899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 315 -~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
.+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+....
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------ 292 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------------ 292 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------------
Confidence 456899999999873 69999999999999999999999998875420
Q ss_pred CCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCC
Q 009114 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (543)
......+ .++|.+++||+++++++.+.+++.++++++++||+||++++++.....+...+++|.|+++
T Consensus 293 ~~~~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 293 NLPARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp TCCCGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred ccccccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 0000000 3799999999999999999999999999999999999976666555555677899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 472 ~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++|+| ++++.++.|+ .|||||+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR 427 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGR 427 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCc
Confidence 9999999 7778888776 89999999999999999999999999 589999999999999999999998
No 17
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=9.2e-62 Score=517.27 Aligned_cols=386 Identities=19% Similarity=0.253 Sum_probs=316.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
+|+.++|++.++++||++|+... +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 74 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILAL 74 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 68999999999999999999653 211 56999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEe--cCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~--~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
+++|+++||+++.++++++.+++++++++++|+ +....+.+.... +.++ ++. +
T Consensus 75 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~---------------------~ 129 (504)
T 1t5h_X 75 HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-IIF---------------------L 129 (504)
T ss_dssp HHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EEE---------------------G
T ss_pred HHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eEE---------------------e
Confidence 999999999999999999999999999999999 666554441211 2222 222 2
Q ss_pred HHHHhcCc----cCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCccc--CCCcEEEEeCChHHHH
Q 009114 237 SNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHIY 310 (543)
Q Consensus 237 ~~l~~~~~----~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~--~~~d~~l~~lpl~h~~ 310 (543)
+++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+.+ .++|++++++|++|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 22222110 11112234568999999999999999999999999999888777666677 8899999999999999
Q ss_pred HHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 311 ERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+......
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 266 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------------- 266 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT-----------------------
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc-----------------------
Confidence 9854 678899999999987 799999999999999999999999998876310000
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSP 468 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p 468 (543)
.....+++|.+++||+++++++.+.+++.+++.++++||+||++..... . +...+++|.|
T Consensus 267 -----------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~-~--~~~~~~~g~p 326 (504)
T 1t5h_X 267 -----------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYM-R--QPKTGTEMAP 326 (504)
T ss_dssp -----------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEE-E--SCSSSSEEBC
T ss_pred -----------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccccc-c--CCCCCccccC
Confidence 0001158999999999999999999999999999999999999432221 1 3456889999
Q ss_pred CCCeEEEEeecCCC--CCCCCCCCCCCceEEEe-CccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 NAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~~~~evkivd~~~~--~~~~~~~p~~~GEi~v~-g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.++++++|+|.++. +.++.|+ .|||+|+ |+++++|||++|+.|++.| .||||+|||+|++|+||+|+|+||
T Consensus 327 ~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR 400 (504)
T 1t5h_X 327 GFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGR 400 (504)
T ss_dssp CTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCc
Confidence 99999999994432 5666665 8999999 9999999999999999999 799999999999999999999998
No 18
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=9e-62 Score=524.78 Aligned_cols=380 Identities=18% Similarity=0.212 Sum_probs=319.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...+++++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45689999999999999999999664 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.+++++++++++|++.+.... ......++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc----------------
Confidence 9999999999999999999999999999999999998764332 22222222211100
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
.............++|+++|+|||||||.||||++||+++.+.+.. .....+.++|++++++|++|..+....
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001112233467899999999999999999999999999877654 344678899999999999998777777
Q ss_pred HHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999876 5899999999999999999999999988753110
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC----CCCCCCCcCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE----GDNLSGHVGS 467 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~----~~~~~~~vG~ 467 (543)
..+++|.+++||+++++++.+.++..+ +++++++||+||+++.++.... ......++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 015899999999999999999888877 7899999999999876654322 1234567999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCC--------CeeeccceEEEecCCcEE
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~--------gw~~TGDig~~~~~G~l~ 539 (543)
|+++++++|+| ++++.++.|+ .|||||+|+++++|||++|+.|+++|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6777777776 89999999999999999999999999543 799999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 464 ~~GR 467 (570)
T 4gr5_A 464 YVGR 467 (570)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9999
No 19
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=9.7e-62 Score=555.77 Aligned_cols=409 Identities=26% Similarity=0.381 Sum_probs=341.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.|...|++++|++.++++||++|+.+. +.. +++||+||.++++++|++|+++|+++||+|+|+++|++||+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 346789999999999999999999664 221 5699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++||+++.++++++.++++++++++||++.+..+.+....... .+ .++.+++.... .......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV------PIPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS------CCCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc------cCCcccc
Confidence 9999999999999999999999999999999999999988776655544332 22 34444432110 0111245
Q ss_pred eHHHHHhcCcc--CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHH
Q 009114 235 TYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 235 ~~~~l~~~~~~--~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lpl~h 308 (543)
.|.++...... ...+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 56665543322 122334567899999999999999999999999999988766543 356789999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 309 IYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+....
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 338 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET----------------------- 338 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG-----------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc-----------------------
Confidence 999976 567899999999987 7999999999999999999999999888652110
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccC-----CCCCC
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDN 460 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~-----~~~~~ 460 (543)
.....+++|.+++||+++++++.+++++.| +++++++||+||++.+++.. .+...
T Consensus 339 -------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 339 -------------------EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp -------------------GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred -------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 001125899999999999999999999998 89999999999998665433 23345
Q ss_pred CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEE
Q 009114 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 461 ~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i 540 (543)
..+++|.|+++++++|+|+++++.++.++ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999987788888887 899999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 477 ~GR 479 (979)
T 3tsy_A 477 VDR 479 (979)
T ss_dssp EEE
T ss_pred ecC
Confidence 998
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.3e-61 Score=518.11 Aligned_cols=380 Identities=19% Similarity=0.263 Sum_probs=315.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999653 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.+++++++++++|++.+....+.... ....++.++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443321 111233332210
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
+ .. ........+..++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...
T Consensus 167 ---~-~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---I-KI-REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T-TT-SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---h-cc-ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 00 000112234568999999999999999999999999999888877777889999999999999999998878
Q ss_pred HHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 4889999999999999999999998765220
Q ss_pred CCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC---CCCCCcCCC
Q 009114 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (543)
...++|.+++||+++++++.+.++.. ++++++||+||++..++.....+ ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 01589999999999999999998874 78999999999986655432222 345789999
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC------CCeeeccceEEEecCCcEEEec
Q 009114 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (543)
Q Consensus 469 ~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~------~gw~~TGDig~~~~~G~l~i~g 542 (543)
+++++++|+| ++++.++.|+ .|||||+|+++++|||++|+.|+++|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6777777776 8999999999999999999999999943 4699999999999999999999
Q ss_pred C
Q 009114 543 R 543 (543)
Q Consensus 543 R 543 (543)
|
T Consensus 428 R 428 (563)
T 1amu_A 428 R 428 (563)
T ss_dssp E
T ss_pred c
Confidence 8
No 21
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.2e-61 Score=511.96 Aligned_cols=383 Identities=19% Similarity=0.235 Sum_probs=318.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|++||+++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999764 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ .. ++. ...+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~~-~~~------------------~~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-VR-IVS------------------EDNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-SE-EEE------------------THHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-cc-eec------------------hhhhhh
Confidence 9999999999999999999999999999999997542110 000 00 110 011222
Q ss_pred HHhcC-ccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 239 LLSQG-RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 239 l~~~~-~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
+.... ...+.+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 22211 11222334567899999999999999999999999999999888877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+.....
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 254 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------------- 254 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------------
Confidence 999999999987 488999999999999999999999987754100
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC-----CCCCCcCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (543)
......+++|.+++||+++++++.+.+++.| +++++++||+||+++.++.....+ ....++|.
T Consensus 255 -----------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 255 -----------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp -----------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred -----------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 0011125899999999999999999999998 899999999999987665433221 35678999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc---CCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|.++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++ +||+|+|+||
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR 397 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGR 397 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEE
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecc
Confidence 99999999999 7777777776 89999999999999999999999998 56789999999999 7999999998
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.6e-60 Score=519.59 Aligned_cols=398 Identities=19% Similarity=0.250 Sum_probs=334.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|++++|++.++ ||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999653 2 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...++...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999997654 223333334455666665544221
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~ 311 (543)
..+.+....... .....+..++|+++|+|||||||.||||+++|+++++.+......+.+.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 234444443322 22334567899999999999999999999999999999888877788999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
... .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.+........
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------------- 298 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR--------------------- 298 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT---------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc---------------------
Confidence 885 677899999999987 78999999999999999999999999887643211000
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-CCCCCcCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (543)
...+++|.+++||+++++++.+.+...+++++++.||+||++..++...... ....++|.
T Consensus 299 -------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 299 -------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp -------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 0115899999999999999999999999999999999999876554332211 22357899
Q ss_pred CC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+ ++.+++|+| ++++.++.|+ .|||||+|+++++|||++|+.|+++|+.+|||+|||+|++++||.|+|+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR 432 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGR 432 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEee
Confidence 97 788999999 7788888887 899999999999999999999999999999999999999999999999998
No 23
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.3e-60 Score=507.29 Aligned_cols=382 Identities=18% Similarity=0.217 Sum_probs=323.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
.|+.++|++.++++||++|+.+. + +++||+||+++++++|++|.+. |.++|++|+++++|+++|+++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999663 2 4699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||+++.++.+++.+++++++++++|++...... .. ...+....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999996543110 00 0112346677
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
++...............++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 77655443333334467899999999999999999999999999999888877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+.....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 253 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------------- 253 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------------
Confidence 999999999886 488999999999999999999999988754200
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC-----CCCCCCCcCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-----GDNLSGHVGS 467 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~ 467 (543)
......+++|.+++||+++++++.+.+++.| +++++++||+||+++.++.... ......++|.
T Consensus 254 -----------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 254 -----------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp -----------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred -----------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 0011125899999999999999999999998 8999999999999876654322 1244567999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC-CCC--eeeccceEEEecCCcEEEecC
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~-~~g--w~~TGDig~~~~~G~l~i~gR 543 (543)
|+++++++|+| ++++.++.|+ .|||||+|+++++|||++|+.|++.|. .+| ||+|||+|++ +||+|+|+||
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR 396 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGR 396 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEcc
Confidence 99999999999 6678887776 899999999999999999999999982 233 7999999999 5999999998
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=9.9e-61 Score=511.59 Aligned_cols=382 Identities=19% Similarity=0.220 Sum_probs=319.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+... + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|+++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999653 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||+++.++++++.+++++++++++|++.+....+ .+..+..+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-----------------------------~~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-----------------------------EGISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-----------------------------TTSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-----------------------------ccCcccchh
Confidence 999999999999999999999999999999999987532111 012334444
Q ss_pred HHHhcCc--cCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHHHH
Q 009114 238 NLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 238 ~l~~~~~--~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
++..... ..........++|+++|+|||||||.||||++||+++++.+...... +.+.++|++++++|++|.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 4432211 11123345678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 314 ~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+.....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 257 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--------------------------- 257 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------
Confidence 8888999999999876 388999999999999999999999987654100
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC-----CCCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (543)
......+++|.+++||+++++++.+.+.+.| +++++++||+||+++.++..... ....+
T Consensus 258 ---------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 258 ---------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp ---------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred ---------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 0001125899999999999999999999988 89999999999998766543221 13557
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc---CCCCeeeccceEEEecCCcEEE
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDig~~~~~G~l~i 540 (543)
++|+|+++++++|+| +++..++.++ .|||||+||+++.|||++|+.|+++| +.+|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6777777776 89999999999999999999999998 6788999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 399 ~GR 401 (521)
T 3l8c_A 399 GGR 401 (521)
T ss_dssp EEE
T ss_pred eCc
Confidence 998
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-60 Score=519.17 Aligned_cols=378 Identities=18% Similarity=0.148 Sum_probs=314.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
....|++++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34689999999999999999999764 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++|||++.++.+++.++++++++++|+++....... ..+..+ .
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~----------------------~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV----------------------P 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE----------------------E
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee----------------------e
Confidence 99999999999999999999999999999999999765432110 111100 0
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
+..+. ............++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++++++|++|.+++...
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 00000 001111223356899999999999999999999999999887665 445778899999999999999999888
Q ss_pred HHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.+++.|+++++.+ .++..+.+.++++++|++..+|++++.+.+.-.
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------ 272 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------ 272 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------
Confidence 89999999999864 689999999999999999999999998865200
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC----CCCCCCcCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (543)
...+++|.+++||+++++++.+.+...+ +++++++||+||++.+++..... .....++|+
T Consensus 273 ---------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 273 ---------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp ---------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred ---------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 0115899999999999988888777665 78999999999998765532221 245678999
Q ss_pred CCCCeEEEEeecCCCCC-CCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCC-------CeeeccceEEEecCCcEE
Q 009114 468 PNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 468 p~~~~evkivd~~~~~~-~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~-------gw~~TGDig~~~~~G~l~ 539 (543)
|+++++++|+| ++++. .+.|. .|||||+|++|++|||++|++|+++|..+ +||+|||+|++|+||+|+
T Consensus 338 p~~~~~~~i~d-~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~ 413 (620)
T 4dg8_A 338 AIAGTAVLLLD-EHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLR 413 (620)
T ss_dssp ECTTEEEEEEC-TTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEE
T ss_pred cccCcEEEEEC-ccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEE
Confidence 99999999999 44444 56665 89999999999999999999999999543 799999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 414 ~~GR 417 (620)
T 4dg8_A 414 FIGR 417 (620)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9999
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.8e-60 Score=514.90 Aligned_cols=397 Identities=19% Similarity=0.249 Sum_probs=323.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++|+.+. ++ +..+++||+||.++++++|++|.++|+++||+|+|+++|+++|+++++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 5689999999999999999999876 42 234779999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCC---HHHHHHHHHhcCccEEEecCcCHHHHHhhc-cCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 157 ACSAYSFISVPLYDTLG---PDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~---~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
||+++|+++||+++.+. .+++.++++++++++++++.+....+.... ...+.+..+ .
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence 99999999999999884 578999999999999999887665543322 112211111 1
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
...++++... ...........++|+++|+|||||||.||||++||+++++.+......+.+.++|++++++|++|.+++
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 1112221111 111123345678999999999999999999999999999999888878889999999999999999999
Q ss_pred HH-HHHHHHhCcEEEEec-C----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 313 AN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 313 ~~-~~~~l~~G~~i~~~~-~----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
.. .+.+++.|+++++.+ + ++..+++.++++++|++.++|.++..+.+.+....
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------- 282 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------------- 282 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------------
Confidence 87 678999999999986 2 89999999999999999999999988866321110
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC------CccccccChhhhccccccCCCC--
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG-- 458 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~-- 458 (543)
......+++|.+++||+++++++.+.+++.|+ ++++++||+||++++++...+.
T Consensus 283 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 283 ------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp ------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred ------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 00111268999999999999999999999883 3699999999998776643221
Q ss_pred -------------------------CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhh
Q 009114 459 -------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (543)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~ 513 (543)
....+++|.|+++ ++|+|.+++..++.++ .|||||+||+|++|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234688999998 8899976677777776 899999999999999999999
Q ss_pred hhhhcCC------CC--eeeccceEEEecCCcEEEecC
Q 009114 514 TKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 514 t~~~~~~------~g--w~~TGDig~~~~~G~l~i~gR 543 (543)
|+++|.. +| ||+|||+|++| ||.|+|+||
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR 456 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcC
Confidence 9999954 24 99999999999 999999998
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.8e-59 Score=503.14 Aligned_cols=395 Identities=21% Similarity=0.338 Sum_probs=327.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.+...|+.++|++.++++|+.+++.. ..+..+.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 90 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEA 90 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 45678999999999999999877733 222346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCc
Q 009114 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~-------~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (543)
++||+++|+++||+++.++ .+++.+++++++++++|++.+..+.+.......+.+..
T Consensus 91 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---------------- 154 (576)
T 3gqw_A 91 FFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHV---------------- 154 (576)
T ss_dssp HHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEE----------------
T ss_pred HHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCccee----------------
Confidence 9999999999999999999 89999999999999999999887777665544433321
Q ss_pred CCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC-cccCCCcEEEEeCCh
Q 009114 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPL 306 (543)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~-~~~~~~d~~l~~lpl 306 (543)
......... .........+.++|+++|+|||||||.||||++||+++++.+...... +.+.++|++++++|+
T Consensus 155 ------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 155 ------LSHAWFKAL-PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp ------EEHHHHHTS-CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred ------cchhhhhcc-cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 112222111 112223345678999999999999999999999999999888776554 788999999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 009114 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (543)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (543)
+|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++|.++..+...+...
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 291 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK---------------- 291 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH----------------
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc----------------
Confidence 99999986 456788999998876 48899999999999999999999998765421111
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh------CCccccccChhhhcccccc
Q 009114 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF------GGRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~------~~~i~~~YG~TE~~~~~~~ 454 (543)
.......+++|.+++||+++++++.+.+.+.| ++.+++.||+||++..++.
T Consensus 292 -----------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 348 (576)
T 3gqw_A 292 -----------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSF 348 (576)
T ss_dssp -----------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred -----------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeec
Confidence 11111236899999999999999999999988 6789999999999877665
Q ss_pred CCCCCC----------------------------CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhh
Q 009114 455 LDEGDN----------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (543)
Q Consensus 455 ~~~~~~----------------------------~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~g 506 (543)
...... ...++|+|+++++++|+| ++++.++.++ .|||||+|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~g 424 (576)
T 3gqw_A 349 SDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERV---VGHICISGPSLMSG 424 (576)
T ss_dssp CCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTB---CEEEEEESTTSCCC
T ss_pred ccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCC---eEEEEEeCcccccc
Confidence 432210 113799999999999999 7778887776 89999999999999
Q ss_pred hcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
||++|+.|++.+ .+|||+|||+|++ +||+|+|+||
T Consensus 425 Y~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR 459 (576)
T 3gqw_A 425 YFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGR 459 (576)
T ss_dssp BTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEE
T ss_pred ccCCcccccccc-CCCeeeccceEEE-ECCEEEEEec
Confidence 999999998877 7999999999999 7999999998
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.6e-60 Score=503.30 Aligned_cols=391 Identities=21% Similarity=0.247 Sum_probs=309.1
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 009114 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (543)
Q Consensus 80 tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~ 159 (543)
|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++ +||+|+|+++|+++|+++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999664 2 3599999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee-eHHH
Q 009114 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYSN 238 (543)
Q Consensus 160 ~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (543)
++|+++||+++.++++++.+++++++++++|++.+.......... ...++.+.......... ......... ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLL---DNTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccccc---ccccccccccchhh
Confidence 999999999999999999999999999999999775443322111 11111111110000000 000000000 0111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~ 318 (543)
+...............++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11111111112334678999999999999999999999999999998888777889999999999999999999988889
Q ss_pred HHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
++.|+++++.+ +++..+++.++++++|+++++|+++..+.+....
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------- 271 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------------- 271 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------
Confidence 99999999987 6999999999999999999999999988653100
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCCCCCcCCCCCCeEEE
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEIK 475 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~evk 475 (543)
...++|.+++||+++++++.+.++. +++++++.||+||+++.++...+. ....+++|.|+++++++
T Consensus 272 -----------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 272 -----------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp -----------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred -----------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 0027999999999999999999987 599999999999998755543332 24567899999999999
Q ss_pred EeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+|.+ .+ ..|||+|+|+++++|||++|+.|++ | .+|||+|||+|++|+||+++|+||
T Consensus 340 i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR 396 (501)
T 3ipl_A 340 IKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDR 396 (501)
T ss_dssp EESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred EecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEcc
Confidence 99943 22 3799999999999999999999988 6 689999999999999999999998
No 29
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.2e-60 Score=502.32 Aligned_cols=381 Identities=24% Similarity=0.303 Sum_probs=308.1
Q ss_pred CCCCHHHHHHHHHHhcCC-CccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
.+.|+.++|.+.++++|+ ++|+.+. + +.+||+||.++++++|.+|. .|++|+|+++|++||++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 356777778888888887 9999663 2 46999999999999999875 3789999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++|||++.++.+++.+++++++++++|++.+... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865210 00111222221 1110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~- 314 (543)
.....+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233467899999999999999999999999999999888877788999999999999999999876
Q ss_pred HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
.+.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 266 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------------- 266 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------------
Confidence 678999999999887 7889999999 88999999999999988764211100
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeE
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~e 473 (543)
.....+++|.+++||+++++++.+.++..+++++++.||+||++..++.........+++|+|+++++
T Consensus 267 ------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 267 ------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp ------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred ------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 00001478999999999999999999999999999999999998877766666677789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 474 vkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|+| ++++.++...+++.|||+|+|++++.|||++|+.|+++|+.+|||+|||+|++|+||.|+|+||
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR 403 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGR 403 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCC
Confidence 99999 5555555411124899999999999999999999999999999999999999999999999998
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=4.9e-59 Score=502.97 Aligned_cols=395 Identities=16% Similarity=0.149 Sum_probs=314.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEe-ecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVR-VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
....|+.++|++.++++||++|+.+... .+......+.+||+||.++++++|++|.+.|+ +||+|+|+++|+++|+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 3558899999999999999999987510 01112334789999999999999999999999 799999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++|||++.++.+++.+++++++++++|++.+....+ ..+....++..+. .
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~ 154 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------Q 154 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------H
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------h
Confidence 999999999999999999999999999999999999987654321 1111111221110 1
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc--------CcccCCCcEEEEeCCh
Q 009114 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISYLPL 306 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~lpl 306 (543)
.+.+....... ........++++++|+|||||||.||||++||+++.+.+..... ...+...++++++.|+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (562)
T 3ite_A 155 SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASR 233 (562)
T ss_dssp HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCT
T ss_pred hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCc
Confidence 23333222211 12223456789999999999999999999999999887765432 2457788999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 307 AHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
.|.+++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 234 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------------ 289 (562)
T 3ite_A 234 AFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------------ 289 (562)
T ss_dssp TSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------------
T ss_pred hhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------------
Confidence 99998888888999999998865 2356788999999999999999988654210
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-CCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSG 463 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~ 463 (543)
....+++|.+++||+++++++.+.++..++++++++||+||++..++.... .+...+
T Consensus 290 ----------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 347 (562)
T 3ite_A 290 ----------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347 (562)
T ss_dssp ----------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTT
T ss_pred ----------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCc
Confidence 001158999999999999999999999889999999999999876554432 335567
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCC--eeeccceEEEecCCcEEEe
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~g--w~~TGDig~~~~~G~l~i~ 541 (543)
++|.|+++++++|+|.+++..++.|+ .|||||+|+++++|||++|+.|+..+ .+| ||+|||+|++|+||+|+|+
T Consensus 348 ~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~ 423 (562)
T 3ite_A 348 CIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFL 423 (562)
T ss_dssp EEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred cccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEE
Confidence 89999999999999977777777776 89999999999999999999998776 344 9999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 424 GR 425 (562)
T 3ite_A 424 GR 425 (562)
T ss_dssp EE
T ss_pred cc
Confidence 98
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.6e-56 Score=523.38 Aligned_cols=382 Identities=21% Similarity=0.275 Sum_probs=320.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..+++++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++|++|+|+++|+++|+++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999664 3 3499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++|||+|.++.+++.++++++++++|+++.+....+. .++....++.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876543221 122222333333210
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
.. . .....+.....++|+++|+|||||||.||||+++|+++.+. ......+.++++|+++.+.|++|..+....+.
T Consensus 592 ~~-~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-E--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-G--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-c--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 0 01112233467899999999999999999999999999876 44455578899999999999999998888889
Q ss_pred HHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+++.|+++++.+ .++..+.+.|.++++|++.++|++++.+.+.....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----------------------------- 718 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----------------------------- 718 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-----------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc-----------------------------
Confidence 999999999986 48899999999999999999999999886520000
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC-CccccccChhhhccccccCCC----CCCCCCCcCCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDE----GDNLSGHVGSP 468 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~----~~~~~~~vG~p 468 (543)
+ +++|.+++||+++++++.+.+...++ +.++++||+||++..++.... ......++|+|
T Consensus 719 --------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 719 --------M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp --------H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred --------C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 0 37999999999999999999988874 789999999999876654322 22345689999
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC------CCCeeeccceEEEecCCcEEEec
Q 009114 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (543)
Q Consensus 469 ~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~------~~gw~~TGDig~~~~~G~l~i~g 542 (543)
+++++++|+| ++++.++.|. .|||||+|++|++||+|+|++|+++|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6678888776 899999999999999999999999993 35699999999999999999999
Q ss_pred C
Q 009114 543 R 543 (543)
Q Consensus 543 R 543 (543)
|
T Consensus 859 R 859 (1304)
T 2vsq_A 859 R 859 (1304)
T ss_dssp E
T ss_pred C
Confidence 8
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6e-37 Score=310.88 Aligned_cols=213 Identities=16% Similarity=0.129 Sum_probs=182.8
Q ss_pred CCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHh
Q 009114 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (543)
Q Consensus 255 ~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~ 334 (543)
.||+++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++++...+.+++.|+++++.... ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-AN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC-SC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc-cc
Confidence 37899999999999999999999999999998888888999999999999999999999888899999999887632 23
Q ss_pred HHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEE
Q 009114 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (543)
Q Consensus 335 l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr 414 (543)
+++.++++++|++.++|+++..+.+.... ....+++|
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-------------------------------------------~~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT-------------------------------------------SGQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT-------------------------------------------GGGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc-------------------------------------------cccCCcce
Confidence 45678899999999999999988652100 00115899
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCc
Q 009114 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (543)
Q Consensus 415 ~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~G 494 (543)
.+++||+++++++.+++++ ++++++++||+||+++.++.........+.+|.+.|++++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999986 58999999999999988877766777788999999999998754 79
Q ss_pred eEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 495 Ei~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
||+++|+.+ .+|||+|||+|++|+|| +.|+||
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR 248 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGR 248 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEE
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEccc
Confidence 999998642 68999999999999988 667798
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.7e-35 Score=305.61 Aligned_cols=250 Identities=16% Similarity=0.140 Sum_probs=198.1
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCC-CCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCChH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLA 307 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~-~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lpl~ 307 (543)
.+.+.+++.... +.......+ +|+++|+|||||||.||||++||+++.+.+.... ....+.++|++++++|+.
T Consensus 64 P~~~~~~l~~~~---p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (436)
T 3qov_A 64 PFTTKSDMRANY---PFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYG 140 (436)
T ss_dssp CCBCHHHHHHTT---TTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCT
T ss_pred CCCCHHHHHhcC---CCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccc
Confidence 445566665432 122334456 8999999999999999999999999977665543 235788999999999998
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 009114 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (543)
Q Consensus 308 h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (543)
|..+.+. .+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+........
T Consensus 141 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------ 202 (436)
T 3qov_A 141 MFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------ 202 (436)
T ss_dssp TCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------
T ss_pred cchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------
Confidence 7666554 567899999999876 79999999999999999999999999987753221100
Q ss_pred HHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccc-cccCCCCCCCCCC
Q 009114 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH 464 (543)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~ 464 (543)
. ..+++|.+++||+++++++.+++++.||++++++||+||+++. +..... ....
T Consensus 203 -------~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g 257 (436)
T 3qov_A 203 -------P---------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNG 257 (436)
T ss_dssp -------T---------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCSS
T ss_pred -------c---------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCCe
Confidence 0 0158999999999999999999999999999999999999654 332221 1223
Q ss_pred cCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCC------c-
Q 009114 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R- 537 (543)
Q Consensus 465 vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G------~- 537 (543)
+|.|.++++++|+|+++++.++.|+ .|||+|+|. |++.| .++||+|||+|+++++| +
T Consensus 258 ~~~~~~~~~v~i~d~~~g~~~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~ 321 (436)
T 3qov_A 258 MHFWEDCYLVEIIDPETGEPVPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHL 321 (436)
T ss_dssp EEECTTTEEEEEECTTTCSBCSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSC
T ss_pred eEEccCceEEEEEECCCCCCCCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCcc
Confidence 6778889999999988888888887 899999983 44556 78999999999999998 5
Q ss_pred --EEEecC
Q 009114 538 --LKIIDR 543 (543)
Q Consensus 538 --l~i~gR 543 (543)
++|+||
T Consensus 322 ~il~i~GR 329 (436)
T 3qov_A 322 RIDRIKGR 329 (436)
T ss_dssp EECCCCCB
T ss_pred ccCcccCc
Confidence 699998
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.2e-34 Score=302.64 Aligned_cols=251 Identities=18% Similarity=0.150 Sum_probs=198.0
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-H
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-A 307 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lpl-~ 307 (543)
.+.+.+++.+.. +.......++++++|+|||||||.||||++||+++...+.... ..+.+.++|++++.+|+ +
T Consensus 69 P~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 69 PFTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGL 145 (437)
T ss_dssp CCBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred CCCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccc
Confidence 345666665432 1223345678999999999999999999999999877654332 23678899999999999 7
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
|..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.......
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~-------------------- 205 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL-------------------- 205 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC--------------------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC--------------------
Confidence 8888877788899999998776 6999999999999999999999999998774322100
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccc-cccCCCCCCCCCCc
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~v 465 (543)
.. ..+++|.+++||+++++++.+.+++.||++++++||+||+++. +....+.. ..+ +
T Consensus 206 -----~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~ 263 (437)
T 2y27_A 206 -----DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET-KDG-P 263 (437)
T ss_dssp -----CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT-CSS-C
T ss_pred -----Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC-CCc-e
Confidence 00 0158999999999999999999999999999999999998543 33322211 112 5
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEec-CCcE-----E
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----K 539 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~-~G~l-----~ 539 (543)
+.|.++++++|+|++++..++.|+ .|||+|+| .|++.| .++||+|||+|++++ +|++ +
T Consensus 264 ~~~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~------------~t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~ 327 (437)
T 2y27_A 264 TIWEDHFYPEIIDPETGEVLPDGE---LGELVFTS------------LTKEAL-PIIRYRTRDLTRLLPGTARTMRRMEK 327 (437)
T ss_dssp EECTTTEEEEEECTTTCCBCCTTC---CEEEEEEE------------SSCSSS-CCCSEEEEEEECEECCSSSSSCEECC
T ss_pred eEccCceEEEEEcCCCCCCCCCCC---ccEEEEec------------CCcCCc-hhheeecCCEEEEeCCCCCCccccCc
Confidence 667789999999977788888776 89999998 345566 689999999999999 6996 8
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 328 i~GR 331 (437)
T 2y27_A 328 ITGR 331 (437)
T ss_dssp CCEE
T ss_pred cccc
Confidence 9988
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.6e-34 Score=300.62 Aligned_cols=251 Identities=16% Similarity=0.124 Sum_probs=197.5
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCCh-H
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-A 307 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl-~ 307 (543)
.+.+.+++.+.. +.......++++++|+|||||||.||||++||+++...+..... .+.+.++|++++.+|+ .
T Consensus 71 P~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 71 PFSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CCBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred CCCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence 445667776432 12233456789999999999999999999999998776544332 4678899999999999 5
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
|..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------- 208 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD------------------- 208 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence 7777777788899999998876 69999999999999999999999999887643221000
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccc-cccCCCCCCCCCCc
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~v 465 (543)
. ..+++|.+++||+++++++.+.+++.||+++++.||+||+++. +...... ...+ +
T Consensus 209 ------~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~ 265 (443)
T 2y4o_A 209 ------P---------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVE-TKDG-P 265 (443)
T ss_dssp ------G---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTT-TCCS-E
T ss_pred ------c---------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCC-CCCc-e
Confidence 0 0158999999999999999999999999999999999998543 3322221 1112 5
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC-CcE-----E
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----K 539 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~-G~l-----~ 539 (543)
+.|.++++++|+|+++++.++.|+ .|||+|+| .|++.| .++||+|||+|+++++ |++ +
T Consensus 266 ~~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~------------~t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~ 329 (443)
T 2y4o_A 266 VIWEDHFYPEIIDPVTGEVLPDGS---QGELVFTS------------LTKEAM-PVIRYRTRDLTALLPPTARAMRRLAK 329 (443)
T ss_dssp EECTTTEEEEEECTTTCCBCCTTC---CEEEEEEE------------SSCSSS-CCSSEEEEEEECEECCSSSSSCEECC
T ss_pred EEccCCeEEEEEcCCCCCCCCCCC---ceEEEEeC------------CCcccC-hhheeecCCEEEEcCCCCCCccccCc
Confidence 557789999999977788888776 89999998 245566 6899999999999999 987 8
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 330 i~GR 333 (443)
T 2y4o_A 330 ITGR 333 (443)
T ss_dssp CCEE
T ss_pred cccc
Confidence 8888
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=8.3e-31 Score=267.37 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=174.4
Q ss_pred CCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 009114 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lpl-~h~~~~~~~~~~l~~G~~i~~~ 328 (543)
..++++++|+|||||||.||||+++|+++...+.... ....+.++|++++++|+ +|++++...+.++..|+.+...
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4678999999999999999999999999998887433 44677899999999999 9999999888889999944333
Q ss_pred cCChH-----------------------hHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 009114 329 QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (543)
Q Consensus 329 ~~~~~-----------------------~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (543)
.+++. .+++.++++++|+++++|+++..|++....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~---------------------- 225 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV---------------------- 225 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH----------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh----------------------
Confidence 36666 777799999999999999999998763110
Q ss_pred HHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHH-Hhh-CCccccccChhhhccccccCCCCCCCCC
Q 009114 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (543)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~-~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 463 (543)
.....+++|.+++||+++++++.+.++ +.| ++++++.||+||+++++..... .
T Consensus 226 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 226 --------------------VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp --------------------HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred --------------------hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 000114899999999999999999999 899 8999999999999876643221 1
Q ss_pred CcCCC------CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCcc---chhhhcCChhhhhhhcCCCCeeeccc
Q 009114 464 HVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL---IFKGYYKDEIQTKEVIDEDGWFHTGD 528 (543)
Q Consensus 464 ~vG~p------~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~---v~~gY~~~~~~t~~~~~~~gw~~TGD 528 (543)
++|.| .++++++|+|+++++.++.|+ .|||+|++.. .+.+|...+..+.... .+||+.+|+
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~~~~~l~ry~tgD~~~~~~~-~~g~~~d~~ 350 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLSPWAFYPRVAERDTAIRLPG-VSGFAGDRL 350 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEETTEEEEEEEEEEEEEEECC-STTCSSCEE
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcCcccccccccCCceEEEecC-CCCCcCccc
Confidence 48999 999999999976888888887 8999999732 2445555554444333 456666554
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.50 E-value=0.0021 Score=67.75 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=25.6
Q ss_pred CCCCCeEEEEecCCCC-CCccEEEecHHHHHH
Q 009114 253 PKPDDVATICYTSGTT-GTPKGAVLSHGNLIA 283 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTT-G~PKgv~~th~~l~~ 283 (543)
..++.+.++.-||||| |.||-+.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3567778899999999 889999999876544
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.29 E-value=0.0014 Score=68.84 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhh-CCccc-cccChhhhccccccCCCCCCCCCCcCCC-CCC-eEEEEeecCCCC-----
Q 009114 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEMN----- 483 (543)
Q Consensus 413 lr~i~~gga~l~~~~~~~~~~~~-~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~evkivd~~~~~----- 483 (543)
+..+++||. ..-...++..+ +.+++ .+|+.||+. +..+......+..+|.. +|+ .-...++.++.+
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce--eeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 667777773 44445555555 56766 999999953 22222111111223321 222 333455543321
Q ss_pred CCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEec----CCcEEEecC
Q 009114 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDR 543 (543)
Q Consensus 484 ~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~----~G~l~i~gR 543 (543)
...+-+.+..+||.|...+ |-| -|++||+.+++. ...|.|+||
T Consensus 377 ~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 377 DLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp EGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEE
T ss_pred CHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEe
Confidence 0111122237899998642 332 389999999986 357888887
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.02 E-value=0.0062 Score=63.90 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=33.7
Q ss_pred ceeeeHHHHHhcCcc--CCCCCCCCCCCCeEEEEecCCCC-CCccEEEecHHHHHH
Q 009114 231 VQILTYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTT-GTPKGAVLSHGNLIA 283 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~--~~~~~~~~~~~d~~~i~~TSGTT-G~PKgv~~th~~l~~ 283 (543)
+.+.+++++...-.. +.....-..++.+.++.-||||| |.+|-+.+|...+-.
T Consensus 71 VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 71 VPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SCCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 456677775322100 01111234566677899999999 789999999887644
No 40
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.78 E-value=2 Score=43.53 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=88.2
Q ss_pred CCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~e~~i~~lA~~~~G~~~vpl 168 (543)
++..+.... ..|.+|.. ..+|.+.+...+..++..+...|+.++|++..+++-. ...+...+++...|+..+++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 344454333 15665543 4578999988888888888788999999999888853 33345567888899998877
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
... .++.+...+++.++.++++.+..+..+.+... ....++.+++-++
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 654 78899999999999999998887776655422 1256777766544
No 41
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.70 E-value=1.6 Score=44.01 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=85.4
Q ss_pred cCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccC--ChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 009114 105 DGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVN--RPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (543)
Q Consensus 105 ~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n--~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~i 180 (543)
.|.+|. ...+|.+.+...+..++..+...++.++|++..+.+- ....+...++++..|+..++..+ ..++.+...
T Consensus 95 SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~ 173 (436)
T 3qov_A 95 SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKF 173 (436)
T ss_dssp SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHH
T ss_pred CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHH
Confidence 455554 3457999998888888888888899999999998874 34445567888999999887654 478889999
Q ss_pred HHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 181 VNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
+++.++.+++..+..+..+.+... .+..++.+++-++
T Consensus 174 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 174 ISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp HHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred HHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 999999999998887777665422 1456787776554
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.69 E-value=1.9 Score=43.55 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=88.1
Q ss_pred CCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~e~~i~~lA~~~~G~~~vpl 168 (543)
++.++.... ..|.+|. ...+|.+.+...+..++..+...|+.++|++..+.+.. ...+...+++...|+..+++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 344554333 2455554 34579999988888888888788999999999888853 33344567888999998876
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
.. ..++.+...+++.++.++++.+..+..+.+... ....++.+++-++
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 55 478899999999999999998887777665432 1256777766544
No 43
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=75.56 E-value=47 Score=34.19 Aligned_cols=120 Identities=9% Similarity=-0.053 Sum_probs=83.9
Q ss_pred cCCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH--HH-HHHHHHhcCCeEE
Q 009114 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LI-VDHACSAYSFISV 166 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~--~i-~~lA~~~~G~~~v 166 (543)
.|+.+|+...+ .|.+|. -..+|.+.+...+..+.. ..++.++|++..++|-.-.+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 45666665542 455443 345788888776655543 34788999998888865333 33 4788889999887
Q ss_pred ecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc----cCCCCeeEEEEeCC
Q 009114 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (543)
Q Consensus 167 pl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~ 217 (543)
.. +...++.+...+++.++.+++..+..+..+.+.. ..++.++.+++-++
T Consensus 255 ~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LS-PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp EC-SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred EC-CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 65 4578899999999999999999888777665432 24567887776544
No 44
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=72.91 E-value=23 Score=36.71 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=81.2
Q ss_pred CCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH--HHHHHHHHhcCCeEEecC
Q 009114 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVPLY 169 (543)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~--~i~~lA~~~~G~~~vpl~ 169 (543)
+.+|+... ..|.+|. -..+|.+.+...+......+...++.++|++..++|-.-.+ ...+++++ .|+..+.+.
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 55555444 2444443 34578988877766555443335788999988888865333 33356667 898887664
Q ss_pred CCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc----CCCCeeEEEEeC
Q 009114 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (543)
Q Consensus 170 ~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~ 216 (543)
...++.+...+++.++.+++..+..+..+.+... .++.++.+++-+
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 5789999999999999999998887777765321 345677766543
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=71.20 E-value=19 Score=35.02 Aligned_cols=105 Identities=13% Similarity=0.011 Sum_probs=69.4
Q ss_pred CCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCh--hHHHHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~--e~~i~~lA~~~~G~~~vpl 168 (543)
++.++.... ..|.+|.. ..+|.+.+...+..++..+...|+.++|++..++|-+. --+...+++...|+.+++.
T Consensus 90 ~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 90 ADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp TTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred ccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 444455443 25555543 34688888888777777777789999999999888622 2234445558889865554
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCccEEEecCcCHHHHHh
Q 009114 169 YDTLGPD-----------------------AVKYIVNHASVQAVFCVPQTLNSLLS 201 (543)
Q Consensus 169 ~~~l~~~-----------------------~l~~il~~~~~~~vi~~~~~~~~l~~ 201 (543)
.+.+. .+..++++.++.++++.+..+..+.+
T Consensus 168 --~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 168 --DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp --CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred --cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 33444 66678899999999998876666544
No 46
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=68.59 E-value=47 Score=34.19 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=82.1
Q ss_pred CCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH---HHHHHHhcCCeEEe
Q 009114 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI---VDHACSAYSFISVP 167 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i---~~lA~~~~G~~~vp 167 (543)
++.+|+... ..|.+|. -..+|.+.+...+..++.. .++.++|++..++|....+-. ..++++..|+..+.
T Consensus 190 ~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 190 ADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp TTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred ccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 455666544 2444443 3457898888777665543 488999999998886544333 36788888988876
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc----CCCCeeEEEEeCC
Q 009114 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (543)
Q Consensus 168 l~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~ 217 (543)
.. ...++.+...+++.++.++++.+..+..+.+... .++.++.+++-++
T Consensus 265 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 265 AP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred CC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 54 4678889999999999999998887776655432 2456787776544
No 47
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=67.54 E-value=36 Score=34.65 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=80.9
Q ss_pred cCCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEccCChhH--HHHHHHHHhcCCeE
Q 009114 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEW--LIVDHACSAYSFIS 165 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~--~~gd~V~i~~~n~~e~--~i~~lA~~~~G~~~ 165 (543)
.|+.+|+... ..|.+|. -..+|.+.+...+..+.. ..++ .++|++..++|-.-.. +..+++++..|+..
T Consensus 151 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFY--TSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEE--CCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 4566666554 2455443 245788888766655543 3467 7788888888765433 23567888899988
Q ss_pred EecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc-c-----CCCCeeEEEEeCC
Q 009114 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-S-----EVPTVRLIVVIGG 217 (543)
Q Consensus 166 vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~-----~~~~l~~ii~~~~ 217 (543)
+... ...++.+...+++.++.+++..+..+..+.+.. . .++.++.+++-++
T Consensus 226 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 226 VVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp EECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCT
T ss_pred EeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCC
Confidence 8765 478889999999999999999988887776543 1 2466777766443
No 48
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=67.51 E-value=58 Score=32.96 Aligned_cols=119 Identities=15% Similarity=0.027 Sum_probs=82.6
Q ss_pred cCCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChh-HHHHHHHHHhcCCeEEec
Q 009114 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE-WLIVDHACSAYSFISVPL 168 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e-~~i~~lA~~~~G~~~vpl 168 (543)
.|+.+|+... ..|.+|.. ..+|.+.+...+..+.. ..++.++|++..++|-.-. -+...++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 3566666554 24554432 45788888777665544 3588999999888886432 233467788889888766
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccC-CCCeeEEEEeC
Q 009114 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVIG 216 (543)
Q Consensus 169 ~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~l~~ii~~~ 216 (543)
. ...++.+...+++.++.++++.+..+..+.+.... ...++.+++-+
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG 283 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG 283 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence 4 57899999999999999999998888777665432 22567666543
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=66.97 E-value=65 Score=32.86 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=78.5
Q ss_pred CCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH--HHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI--VDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i--~~lA~~~~G~~~vpl 168 (543)
|+.+|+...+ .|.+|. -..+|.+.+...+..++.. .++.++|++..++|-.-..-. .+++++ .|+..+..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 4555554442 455443 2457888887776665554 488999999988887543332 244444 78887765
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc----cCCCCeeEEEEeCC
Q 009114 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~ 217 (543)
+...++.+...+++.++.+++..+..+..+.+.. ..++.++.+++-++
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 5678999999999999999999888777665432 23567777766443
No 50
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=66.14 E-value=55 Score=33.28 Aligned_cols=120 Identities=8% Similarity=-0.008 Sum_probs=81.8
Q ss_pred CCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEecC
Q 009114 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLY 169 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~-~i~~lA~~~~G~~~vpl~ 169 (543)
++.+++...+ .|.+|.. ..+|.+.+...+..+.. ..++.++|++..++|-.... +...++++..|+..+.+.
T Consensus 142 ~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 142 EHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp TTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 4556655442 5555543 35788888766655543 35788999999988865433 345778889999887765
Q ss_pred CC--CCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc----CCCCeeEEEEeCC
Q 009114 170 DT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (543)
Q Consensus 170 ~~--l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~ 217 (543)
.. ..++.+...+++.++.+++..+..+..+..... .++.++.+++-++
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 43 567888999999999999998887776654321 2456676665443
No 51
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=65.29 E-value=36 Score=34.70 Aligned_cols=120 Identities=11% Similarity=0.015 Sum_probs=79.7
Q ss_pred CCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChh-HHHHHHHHHhcCCeEEecC
Q 009114 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE-WLIVDHACSAYSFISVPLY 169 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e-~~i~~lA~~~~G~~~vpl~ 169 (543)
++.+|+...+ .|.+|.. ..+|.+.+...+..... ..++.++|++..++|-.-. .+...++++..|+..+.+.
T Consensus 143 ~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 143 GDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp TTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 4555654442 4554433 45788888766555443 4588999999998886532 2345778889999988776
Q ss_pred CC--CCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc----CCCCeeEEEEeCC
Q 009114 170 DT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (543)
Q Consensus 170 ~~--l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~ 217 (543)
+. ..++.+...+++.++.+++..+..+..+..... .++.++.+++-++
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 53 568889999999999999998877766554321 2456776666443
No 52
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=63.11 E-value=45 Score=34.30 Aligned_cols=121 Identities=15% Similarity=-0.010 Sum_probs=80.1
Q ss_pred CCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH-HHHHHHHhcCCeEEecC
Q 009114 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPLY 169 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~-i~~lA~~~~G~~~vpl~ 169 (543)
++.+|+... ..|.+|.. ..+|.+.+...+.... .....++.++|++..++|-.-..- ...++++..|+..+...
T Consensus 175 ~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~ 251 (541)
T 1v25_A 175 ERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG 251 (541)
T ss_dssp TTSEEEEEE--ECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECT
T ss_pred CCCcEEEEE--CCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeC
Confidence 455665443 25555543 3578877754433210 112347788999988888643222 24567788899988877
Q ss_pred CCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc----cCCCCeeEEEEeC
Q 009114 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (543)
Q Consensus 170 ~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~ 216 (543)
+.+.++.+...+++.++.+++..+..+..+.+.. ..++.++.+++-+
T Consensus 252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 6778999999999999999999888777665432 2456778776643
No 53
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=63.07 E-value=31 Score=33.42 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=76.8
Q ss_pred HhcCCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChh-HHHHHHHHHhcCCeEE
Q 009114 90 DTFRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE-WLIVDHACSAYSFISV 166 (543)
Q Consensus 90 ~~~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e-~~i~~lA~~~~G~~~v 166 (543)
+-+.|.+|+...+ .|.+|.. ..+|.+.+...+..++.. +++.++|++..++|-.-. -+..++.++..|+..+
T Consensus 33 ~w~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~ 107 (358)
T 4gs5_A 33 KWLGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELT 107 (358)
T ss_dssp HHHHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEE
Confidence 3356777776552 5555543 458999888776665543 588999999888875432 2334555667777777
Q ss_pred ecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc---CCCCeeEEEEeC
Q 009114 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVIG 216 (543)
Q Consensus 167 pl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~---~~~~l~~ii~~~ 216 (543)
...+... ....+++.++..++..+..+..+++... .++.++.+++-+
T Consensus 108 ~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG 157 (358)
T 4gs5_A 108 VTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGG 157 (358)
T ss_dssp EECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECS
T ss_pred ecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcc
Confidence 6665433 2345778899999988877777665332 245566666543
No 54
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=62.88 E-value=48 Score=34.19 Aligned_cols=121 Identities=11% Similarity=0.025 Sum_probs=79.3
Q ss_pred CCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChh-HHHHHHHHHhcCCeEEecCC
Q 009114 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE-WLIVDHACSAYSFISVPLYD 170 (543)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e-~~i~~lA~~~~G~~~vpl~~ 170 (543)
+.+|+... ..|.+|. -..+|.+.+...+......+...++.+++++..++|-.-. -+...++++..|+..+.+ +
T Consensus 190 ~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~ 266 (550)
T 3rix_A 190 KTIALIMN--SSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-Y 266 (550)
T ss_dssp TSEEEEEE--C-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S
T ss_pred CCEEEEEE--CCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEe-C
Confidence 44555443 1444443 2457888877665554444434578889998888886532 234556778889888766 4
Q ss_pred CCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc----CCCCeeEEEEeCC
Q 009114 171 TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (543)
Q Consensus 171 ~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~ 217 (543)
...++.+...+++.++.++++.+..+..+.+... .++.++.+++-++
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 5788999999999999999998887777665422 3567787766443
No 55
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=61.90 E-value=1.4e+02 Score=30.23 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=76.3
Q ss_pred cCCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH--HHHHHHHHhcCCeEEe
Q 009114 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVP 167 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~--~i~~lA~~~~G~~~vp 167 (543)
.++.+|+...+ .|.+|.. ..+|.+.+...+..+.. ..++.++|++..++|-.-.. ...+.++...|..+++
T Consensus 158 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIHT--AAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEEE--EC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 45666665442 4555543 35788888776665554 35889999999888864332 2333334444555444
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc--cCCCCeeEEEEeC
Q 009114 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVIG 216 (543)
Q Consensus 168 l~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~--~~~~~l~~ii~~~ 216 (543)
. ...++.+...+++.++.+++..+..+..+.+.. ..+..++.++.-.
T Consensus 233 -~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g 281 (509)
T 3ivr_A 233 -A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLD 281 (509)
T ss_dssp -S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEEC
T ss_pred -c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccC
Confidence 3 678999999999999999999888887776543 2345666665543
No 56
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=61.62 E-value=48 Score=35.13 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=80.6
Q ss_pred CCCccEEEEEeecCcccceE--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~--i~~lA~~~~G~~~vpl 168 (543)
++.+++...+ .|.+|..+ .+|.+.+...+.... -...+++++|++..+.+-....- ..+++.+..|++.+..
T Consensus 255 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILYT--SGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEEE--CCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEec--cCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 4556655442 55555433 467776654432211 12357899999888777654332 3457889999998876
Q ss_pred CCC---CCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 169 YDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~~---l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
... ..++.+..++++.+++++++.+..+..+.+... .+.+++.+++-++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 542 467889999999999999999888777765432 3467887777654
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=61.58 E-value=1.1e+02 Score=31.94 Aligned_cols=119 Identities=13% Similarity=-0.013 Sum_probs=81.6
Q ss_pred CCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH--HH-HHHHHHhcCCeEEe
Q 009114 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LI-VDHACSAYSFISVP 167 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~--~i-~~lA~~~~G~~~vp 167 (543)
|+.+|+...+ .|.+|. -..+|.+.+...+...... .++.++|++..++|-...+ .. ..++++..|+..+.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 4566665442 455443 3457888887666655443 4788999999998854333 32 46788888988876
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 168 l~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
..+ ..+..+...+++.+++++.+.+..+..+.+... .++.++.+++-++
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 554 578888889999999999998887776654321 3566887776554
No 58
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=61.04 E-value=56 Score=33.90 Aligned_cols=120 Identities=11% Similarity=-0.004 Sum_probs=79.1
Q ss_pred CCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~--i~~lA~~~~G~~~vpl 168 (543)
|+.+|+... ..|.+|.. ..+|.+ +...... ......++.++|++..++|-.-..- ..+++++..|+..+..
T Consensus 205 ~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 205 SQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 455665544 24555543 356777 4331111 1124468899999888888654433 3467788889887766
Q ss_pred CC-CCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc---cCCCCeeEEEEeCC
Q 009114 169 YD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL---SEVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~-~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~---~~~~~l~~ii~~~~ 217 (543)
.. .+.++.+...+++.++.+++..+..+..+.+.. ..++.++.+++-++
T Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 53 678999999999999999999888777776532 12466777776554
No 59
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=56.28 E-value=58 Score=34.62 Aligned_cols=121 Identities=11% Similarity=-0.053 Sum_probs=77.9
Q ss_pred CCCccEEEEEeecCcccceE--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~--i~~lA~~~~G~~~vpl 168 (543)
++.+++...+ .|.+|..+ .+|.+.+...+.... -...++.++|++..+++-....- ...++.+..|++.+..
T Consensus 261 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 261 SEDPLFLLYT--SGSTGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp TTSCCEEEEE--CCSSSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred CCCceEEEec--cCCCCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 4566665442 56555444 356666543332211 12357899998887776543222 3457889999988876
Q ss_pred CCC---CCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 169 YDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~~---l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
... ..++.+..++++.+++++++.+..+..+.+... .+..++.+++-++
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 532 467889999999999999998887777765432 2456777766543
No 60
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=54.24 E-value=71 Score=33.59 Aligned_cols=120 Identities=11% Similarity=-0.003 Sum_probs=82.2
Q ss_pred cCCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEec
Q 009114 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~-~i~~lA~~~~G~~~vpl 168 (543)
.|+.+|+...+ .|.+|.. ..+|.+.+...+. .....++.++|++..+++-+-.. +..+++++..|+..+..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 35667765552 5555543 3467777644332 23345788999999988865443 34467888899887765
Q ss_pred C-CCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc-CCCCeeEEEEeCC
Q 009114 169 Y-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~-~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~-~~~~l~~ii~~~~ 217 (543)
. ....++.+...+++.++.+++..+..+..+.+... .++.++.+++-++
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 3 35689999999999999999998887777655332 3567887777654
No 61
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=54.22 E-value=97 Score=31.79 Aligned_cols=103 Identities=8% Similarity=-0.052 Sum_probs=71.6
Q ss_pred CCCCeEEEEecCCC-CCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec
Q 009114 254 KPDDVATICYTSGT-TGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ 329 (543)
Q Consensus 254 ~~~d~~~i~~TSGT-TG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~ 329 (543)
.|+.++++....+. .+. .-.+|.+.+...+..+.. ..++.++|++..++|-..-+ ....++++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccC
Confidence 46778876543221 121 245788887665554433 36788999999998875332 334677889999888776
Q ss_pred --CChHhHHHHHHhhCCeEEEechHHHHHHHH
Q 009114 330 --GDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (543)
Q Consensus 330 --~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~ 359 (543)
.....+...++..++.+++..+.....+..
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 467888889999999999998887766543
No 62
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=54.16 E-value=69 Score=32.79 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec-
Q 009114 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ- 329 (543)
Q Consensus 254 ~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~- 329 (543)
.|+.++++... +| -.+|.+.+...+..+.. ..++.++|++..++|-..-+ ....++++..|+..+...
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 46788766432 22 35898888666554433 36788999999998875332 334677889999888776
Q ss_pred -CChHhHHHHHHhhCCeEEEechHHHHHHHH
Q 009114 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (543)
Q Consensus 330 -~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~ 359 (543)
.....+...++..++.+++..+.....+.+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 477888889999999999998877766544
No 63
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=53.44 E-value=76 Score=32.85 Aligned_cols=121 Identities=2% Similarity=-0.185 Sum_probs=81.9
Q ss_pred cCCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEe
Q 009114 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~--i~~lA~~~~G~~~vp 167 (543)
.|+.+++...+ .|.+|. -..+|.+.+...+..+.. ..++.++|++..++|-.-..- ..+++++..|+..+.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 35666665542 455443 345799988877766554 458899999999988765433 336788888998887
Q ss_pred cCCCC---CHHHHHHHHHhcCccEEEecCcCHHHHHhhc-------cCCCCeeEEEEeCC
Q 009114 168 LYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-------SEVPTVRLIVVIGG 217 (543)
Q Consensus 168 l~~~l---~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-------~~~~~l~~ii~~~~ 217 (543)
..+.. .++.+...+++.++.++......+..+.+.. ..+..++.+++-++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 65432 5678888999999999888776666555431 13456776665443
No 64
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=53.18 E-value=66 Score=33.18 Aligned_cols=113 Identities=11% Similarity=-0.030 Sum_probs=75.1
Q ss_pred cCcccce--EEeeHHHHHHHHHHHHHHHHH-----cCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEecCCCCCHHH
Q 009114 105 DGTVGEY--KWMTYGEAGTARTEVGSGLIY-----HGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLYDTLGPDA 176 (543)
Q Consensus 105 ~~~~~~~--~~~Ty~el~~~~~~la~~L~~-----~g~~~gd~V~i~~~n~~e~-~i~~lA~~~~G~~~vpl~~~l~~~~ 176 (543)
.|.+|.. ..+|.+.+...+..++..+.. ..+...+++..+.+..... +..++.++..|+..+........+.
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 4555543 357999998888877776542 3466777877777765443 3346677888888776544334566
Q ss_pred HHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCC
Q 009114 177 VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG 217 (543)
Q Consensus 177 l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~ 217 (543)
+...+++.++.+++..+..+..+......++.++.+++-++
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred HHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 77889999999999887766555444445677887776544
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=51.72 E-value=73 Score=33.11 Aligned_cols=120 Identities=11% Similarity=-0.096 Sum_probs=77.4
Q ss_pred CCCccEEEEEeecCcccceEE--eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGEYKW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~~~--~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~--i~~lA~~~~G~~~vpl 168 (543)
++.+|+... ..|.+|..+- +|...+...+ .......++.+++++....+...... ..+++.+..|+..+..
T Consensus 224 ~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 298 (580)
T 3etc_A 224 NEDICLVYF--SSGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVY 298 (580)
T ss_dssp TTSEEEEEE--ECCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCcEEEEE--eCCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEe
Confidence 455666544 2566665443 3444333222 12222357888998887777654332 3467888999988776
Q ss_pred C-CCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc---CCCCeeEEEEeCC
Q 009114 169 Y-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~-~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~---~~~~l~~ii~~~~ 217 (543)
. ..+.++.+...+++.++.+++..+..+..+.+... .++.++.+++-++
T Consensus 299 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 299 DYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSS
T ss_pred cCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccC
Confidence 5 67789999999999999999998887776655321 2456777766543
No 66
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=49.90 E-value=1.4e+02 Score=29.60 Aligned_cols=104 Identities=10% Similarity=0.028 Sum_probs=70.3
Q ss_pred CCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC
Q 009114 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG 330 (543)
Q Consensus 254 ~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~ 330 (543)
.|+.+|++.........-....+|.+.+...+..+.. .... ++|++..+++-..-+ ....++++..|+..+....
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 4678887665432111123467999988766554433 3444 889998888765332 3346778889998887642
Q ss_pred -----ChHhHHHHHHhhCCeEEEechHHHHHHHH
Q 009114 331 -----DNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (543)
Q Consensus 331 -----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~ 359 (543)
....+...++..++.+++..+.....+.+
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 45678888999999999998887766543
No 67
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=49.75 E-value=78 Score=32.74 Aligned_cols=120 Identities=12% Similarity=-0.009 Sum_probs=81.4
Q ss_pred cCCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCh-hHHHHHHHHHhcCCeEEec
Q 009114 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP-EWLIVDHACSAYSFISVPL 168 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~-e~~i~~lA~~~~G~~~vpl 168 (543)
.|+.+|+...+ .|.+|.. ..+|.+.+..... .....++.++|++..++|-.- -....+++++..|+..+..
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35666665442 4444432 3578877643322 123347889999998888643 3445677888899988776
Q ss_pred CC-CCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc-CCCCeeEEEEeCC
Q 009114 169 YD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~-~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~-~~~~l~~ii~~~~ 217 (543)
.. ...++.+...+++.++.+++..+..+..+.+... .+..++.+++-++
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 53 5678899999999999999998887777765432 4567887776554
No 68
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=44.89 E-value=1.1e+02 Score=31.00 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=71.8
Q ss_pred cCCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCh--hHHHHHHHHHhcCCeEEe
Q 009114 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVP 167 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~--e~~i~~lA~~~~G~~~vp 167 (543)
.++.+++...+ .|.+|.. ..+|.+.+...+..+...+ ++.++|++...+|-.- .++..+++++..|+..+.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35666665542 5555543 4578888887777665544 7889999888877543 233457888889998876
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHh
Q 009114 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLS 201 (543)
Q Consensus 168 l~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~ 201 (543)
. +...++.+...+ +.++.+++..+..+..+.+
T Consensus 228 ~-~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 L-GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp C-SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 6 556777777777 6789999988877766655
No 69
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=43.54 E-value=1.1e+02 Score=31.26 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=68.1
Q ss_pred CCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec-
Q 009114 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ- 329 (543)
Q Consensus 254 ~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~- 329 (543)
.|+.++++.. | ..+|.+.+...+..+.. ..++.++|++..++|-..-+ ....++++..|+..+..+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4567776532 1 35898887766554433 36788999999988875432 334677889999888776
Q ss_pred -CChHhHHHHHHhhCCeEEEechHHHHHHH
Q 009114 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRIY 358 (543)
Q Consensus 330 -~~~~~l~~~i~~~k~t~~~~~P~~l~~l~ 358 (543)
.....+...++..++.+++..+.....+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 46788889999999999999887765543
No 70
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=41.03 E-value=1.7e+02 Score=30.04 Aligned_cols=92 Identities=10% Similarity=0.046 Sum_probs=65.5
Q ss_pred CCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec-
Q 009114 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ- 329 (543)
Q Consensus 254 ~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~- 329 (543)
.|+.++++. . +-.+|.+.+...+..+.. ..++.++|++..++|-..-+ ....++++..|+..+..+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 466777653 1 236898887665544433 35788999999888866322 233677888999888776
Q ss_pred -CChHhHHHHHHhhCCeEEEechHHHH
Q 009114 330 -GDNMKLMDDMAALRPTVFCSVPRLYN 355 (543)
Q Consensus 330 -~~~~~l~~~i~~~k~t~~~~~P~~l~ 355 (543)
.....+...++..++.+++..+....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 46778888899999999998876544
No 71
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=36.65 E-value=96 Score=28.69 Aligned_cols=92 Identities=9% Similarity=-0.050 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCC
Q 009114 84 NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163 (543)
Q Consensus 84 ~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~ 163 (543)
++++..+..|+..++... |....+|-..|..++.+++.+.+..|.+.|. ...++.-|+...+.....-..+..
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~al~~lr~~~~i 92 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAAALYDIREKLDI 92 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHHHHHHHHHhcCC
Confidence 445556678999888776 7777788889999999999999999998766 355566677765433332333444
Q ss_pred eEEecCCCCCHHHHHHHHHhcCc
Q 009114 164 ISVPLYDTLGPDAVKYIVNHASV 186 (543)
Q Consensus 164 ~~vpl~~~l~~~~l~~il~~~~~ 186 (543)
.++-+ -...+...+..++.
T Consensus 93 Pvigi----i~pa~~~A~~~~~~ 111 (269)
T 3ist_A 93 PVIGV----IQPGSRAALKATRN 111 (269)
T ss_dssp CEEES----HHHHHHHHHHHCSS
T ss_pred CEEee----cHHHHHHHHHHcCC
Confidence 44432 12244545554443
No 72
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=34.36 E-value=1e+02 Score=29.41 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=38.2
Q ss_pred CCCCCCEEEEEccCCh------hHH-HHHHHHHhcCCeEEecCCC------------CCHHHHHHHHHhcCccEEEecC
Q 009114 134 GISKGSCIGLYFVNRP------EWL-IVDHACSAYSFISVPLYDT------------LGPDAVKYIVNHASVQAVFCVP 193 (543)
Q Consensus 134 g~~~gd~V~i~~~n~~------e~~-i~~lA~~~~G~~~vpl~~~------------l~~~~l~~il~~~~~~~vi~~~ 193 (543)
-+++||+|+|++|.+. +-+ .+.--+-..|..++.-... .-.+++...+.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999853 112 2222234567776543211 1234677888888899999873
No 73
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=33.05 E-value=1.9e+02 Score=29.09 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=61.0
Q ss_pred EecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEe
Q 009114 275 VLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCS 349 (543)
Q Consensus 275 ~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~ 349 (543)
.+|.+.+...+..+.. ..++.++|++..++|-..-+ ....++++..|+..+..+ .....+...++..++.+++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 5898888766554433 36788999999988876322 334677889999888776 46788888999999999999
Q ss_pred chHHHHHH
Q 009114 350 VPRLYNRI 357 (543)
Q Consensus 350 ~P~~l~~l 357 (543)
.+.....+
T Consensus 107 ~~~~~~~~ 114 (503)
T 4fuq_A 107 DPSKRDGI 114 (503)
T ss_dssp CGGGTTTT
T ss_pred CchhhHHH
Confidence 87755443
No 74
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=32.14 E-value=1.2e+02 Score=33.88 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=69.2
Q ss_pred CCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec
Q 009114 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ 329 (543)
Q Consensus 254 ~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~ 329 (543)
.|+.++++... +| ..+|.+.+...+..+.. ..++.++|++..++|-.. +++. .++++..|+..+..+
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~--e~~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP--EFVLSFLAASFRGATATAAN 144 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH--HHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH--HHHHHHHHHHHcCCEEEeeC
Confidence 47788876432 22 45888887665544433 367889999999998763 3344 677899999988776
Q ss_pred --CChHhHHHHHHhhCCeEEEechHHHHHH
Q 009114 330 --GDNMKLMDDMAALRPTVFCSVPRLYNRI 357 (543)
Q Consensus 330 --~~~~~l~~~i~~~k~t~~~~~P~~l~~l 357 (543)
.....+...++..++.++++.+.....+
T Consensus 145 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 145 PFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 4778888899999999999987765544
No 75
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=30.71 E-value=1.3e+02 Score=28.91 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=38.5
Q ss_pred CCCCCCEEEEEccCChh------HH-HHHHHHHhcCCeEEecCCC------------CCHHHHHHHHHhcCccEEEecC
Q 009114 134 GISKGSCIGLYFVNRPE------WL-IVDHACSAYSFISVPLYDT------------LGPDAVKYIVNHASVQAVFCVP 193 (543)
Q Consensus 134 g~~~gd~V~i~~~n~~e------~~-i~~lA~~~~G~~~vpl~~~------------l~~~~l~~il~~~~~~~vi~~~ 193 (543)
-+++||+|+|++|.++- -+ .+.--+-..|..++.-... .-.+++...+.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998742 22 2222233578877642111 1124677788888899999874
No 76
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=30.39 E-value=1.5e+02 Score=28.17 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=47.6
Q ss_pred HHHcC-CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc
Q 009114 130 LIYHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (543)
Q Consensus 130 L~~~g-~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~ 194 (543)
..+.| +++|+.|.+....+-.-..+.++|...|.-++.+-|.-.+..-...++..++++++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455 488887645555677777888888899988776656555556667789999999999754
No 77
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=30.15 E-value=3.5e+02 Score=25.34 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=43.9
Q ss_pred CCCCCEEEEEccCChhHHHHHHHHHhcCCeEE--ecCC--CCCHHHHHHHHHhcCccEEEec-Cc-------CHHHHHhh
Q 009114 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISV--PLYD--TLGPDAVKYIVNHASVQAVFCV-PQ-------TLNSLLSC 202 (543)
Q Consensus 135 ~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~v--pl~~--~l~~~~l~~il~~~~~~~vi~~-~~-------~~~~l~~~ 202 (543)
+++||.|.+..+.-..+. .++...|+.++ |+++ .+..+++...++. +.++|++. .. ..+.+.++
T Consensus 105 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 468888888877655433 34455666554 4432 2456777777753 56665543 21 23445555
Q ss_pred ccCCCCeeEEEEeCCC
Q 009114 203 LSEVPTVRLIVVIGGI 218 (543)
Q Consensus 203 ~~~~~~l~~ii~~~~~ 218 (543)
...+.. ...+++|+.
T Consensus 181 ~~~~~~-~~~li~De~ 195 (363)
T 3ffh_A 181 LDRVPS-DVLVVLDEA 195 (363)
T ss_dssp HTTSCT-TSEEEEECT
T ss_pred HHhCCC-CcEEEEeCc
Confidence 544443 445566654
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=29.36 E-value=2.6e+02 Score=23.65 Aligned_cols=89 Identities=8% Similarity=0.024 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHH---HHHHHHhcCccEEEecCcCHHH
Q 009114 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA---VKYIVNHASVQAVFCVPQTLNS 198 (543)
Q Consensus 122 ~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~---l~~il~~~~~~~vi~~~~~~~~ 198 (543)
+...+...|.+.+ ++..+.|+++.....-...-.+...|..+..++..++.++ +...++..+.+++|+......-
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 3444555555533 5667888888765555555555667888888988877654 3444566778888877432221
Q ss_pred HHhhccCCCCeeEEEEeCC
Q 009114 199 LLSCLSEVPTVRLIVVIGG 217 (543)
Q Consensus 199 l~~~~~~~~~l~~ii~~~~ 217 (543)
+ +.+.+..+|.++.
T Consensus 110 l-----di~~~~~VI~~d~ 123 (185)
T 2jgn_A 110 L-----DISNVKHVINFDL 123 (185)
T ss_dssp ------CCCSBSEEEESSC
T ss_pred C-----CcccCCEEEEeCC
Confidence 1 4566777777654
No 79
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.14 E-value=1.3e+02 Score=29.28 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEccCChh------HH-HHHHHHHhcCCeEEecCCC------------CCHHHHHHHHHhcCccEEEecC
Q 009114 134 GISKGSCIGLYFVNRPE------WL-IVDHACSAYSFISVPLYDT------------LGPDAVKYIVNHASVQAVFCVP 193 (543)
Q Consensus 134 g~~~gd~V~i~~~n~~e------~~-i~~lA~~~~G~~~vpl~~~------------l~~~~l~~il~~~~~~~vi~~~ 193 (543)
-+++||+|+|++|.++- -+ .+.--+-..|+.++.-... .-.+++...+.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 58899999999998742 22 1222233478777643221 1224677777888889999864
No 80
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.84 E-value=1.4e+02 Score=28.47 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEccCChh------HHH-HHHHHHhcCCeEEecCCC------------CCHHHHHHHHHhcCccEEEecC
Q 009114 134 GISKGSCIGLYFVNRPE------WLI-VDHACSAYSFISVPLYDT------------LGPDAVKYIVNHASVQAVFCVP 193 (543)
Q Consensus 134 g~~~gd~V~i~~~n~~e------~~i-~~lA~~~~G~~~vpl~~~------------l~~~~l~~il~~~~~~~vi~~~ 193 (543)
-+++||+|+|++|.+.- -+- +.--+-..|..++.-... .-.+++...+.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998652 221 222233478777643211 1224677778888889998864
No 81
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=27.53 E-value=1.9e+02 Score=25.49 Aligned_cols=52 Identities=10% Similarity=-0.134 Sum_probs=36.1
Q ss_pred cEEEEeCCh-HHHHHHHHH-HHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEe
Q 009114 298 DVYISYLPL-AHIYERANQ-VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCS 349 (543)
Q Consensus 298 d~~l~~lpl-~h~~~~~~~-~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~ 349 (543)
.+++...+- .|..|..+. ...-..|..+++.. -.+..+.+.+.+.+|+++..
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344444443 377777664 44566788887765 47889999999999987665
No 82
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=26.02 E-value=2e+02 Score=33.35 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=80.0
Q ss_pred cCCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH-HHHHHHHhcCCeEEec
Q 009114 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPL 168 (543)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~-i~~lA~~~~G~~~vpl 168 (543)
.|+..|+...+ .|.+|.. ..+|.+.+... .......++.++|++..+.+-+-+.. ..+++.+..|+..+..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 46677765552 5555543 35777776532 22223357888999988888765544 3467888889888776
Q ss_pred CC--CCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc-CCCCeeEEEEeCC
Q 009114 169 YD--TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~--~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~-~~~~l~~ii~~~~ 217 (543)
.+ ...++.+...+++.++.+++..+..+..+.+... .++.++.+++-++
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 65 3678899999999999999988877776654321 2345676666544
No 83
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=25.98 E-value=2.4e+02 Score=28.35 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=56.3
Q ss_pred EEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHH-HHHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEE
Q 009114 274 AVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERA-NQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVF 347 (543)
Q Consensus 274 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~-~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~ 347 (543)
-.+|.+.+...+..+.. ..++.++|++..+++-.. +++ ..++++..|+..+... .....+...++..++.++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTY--DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSH--HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEE
Confidence 35898888666554433 367889999888887653 334 3667888898887765 467888889999999998
Q ss_pred EechH
Q 009114 348 CSVPR 352 (543)
Q Consensus 348 ~~~P~ 352 (543)
+....
T Consensus 106 i~~~~ 110 (521)
T 3l8c_A 106 IAIEE 110 (521)
T ss_dssp EESSC
T ss_pred EecCc
Confidence 87654
No 84
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=25.88 E-value=2.8e+02 Score=22.96 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH---HhcCccEEEecCcCHHH
Q 009114 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV---NHASVQAVFCVPQTLNS 198 (543)
Q Consensus 122 ~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il---~~~~~~~vi~~~~~~~~ 198 (543)
+...+...|... ++..+.|+++.....-...-.+...|..+..++..++.++-..++ +..+.+++++......-
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 97 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcC
Confidence 444555545443 455888998887665555555666788888999999887665555 45567888887542211
Q ss_pred HHhhccCCCCeeEEEEeCC
Q 009114 199 LLSCLSEVPTVRLIVVIGG 217 (543)
Q Consensus 199 l~~~~~~~~~l~~ii~~~~ 217 (543)
-+.+.+..||.++.
T Consensus 98 -----id~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 98 -----IDVKQVTIVVNFDL 111 (175)
T ss_dssp -----TCCTTEEEEEESSC
T ss_pred -----CCcccCCEEEEeCC
Confidence 14567777877654
No 85
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=25.62 E-value=2.9e+02 Score=22.95 Aligned_cols=88 Identities=3% Similarity=-0.047 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH---HhcCccEEEecCcCHHH
Q 009114 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV---NHASVQAVFCVPQTLNS 198 (543)
Q Consensus 122 ~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il---~~~~~~~vi~~~~~~~~ 198 (543)
+...+...|... ++..+.|++......-...-.+...|..+..++..++.++-..++ +..+.+++|+......-
T Consensus 18 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 18 KNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp HHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred HHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 334444445443 345788888876555555555566788888999999887655555 45667888887542211
Q ss_pred HHhhccCCCCeeEEEEeCC
Q 009114 199 LLSCLSEVPTVRLIVVIGG 217 (543)
Q Consensus 199 l~~~~~~~~~l~~ii~~~~ 217 (543)
-+.+.+..+|.++.
T Consensus 95 -----ldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 95 -----MDIERVNIAFNYDM 108 (172)
T ss_dssp -----CCGGGCSEEEESSC
T ss_pred -----cchhhCCEEEEECC
Confidence 13355667776653
No 86
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.31 E-value=1.9e+02 Score=27.91 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=40.2
Q ss_pred HHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecC--C---CCCHHHHHHHHHhcC--ccEEEec
Q 009114 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY--D---TLGPDAVKYIVNHAS--VQAVFCV 192 (543)
Q Consensus 129 ~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~--~---~l~~~~l~~il~~~~--~~~vi~~ 192 (543)
.|..+++++||.|.+-.+..... ..++...|+.++.++ + .+..++++..+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34455789999988876655443 345677888766553 2 357888988874434 6776644
No 87
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=22.42 E-value=3.2e+02 Score=22.32 Aligned_cols=87 Identities=2% Similarity=-0.022 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH---HhcCccEEEecCcCHHHH
Q 009114 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV---NHASVQAVFCVPQTLNSL 199 (543)
Q Consensus 123 ~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il---~~~~~~~vi~~~~~~~~l 199 (543)
...+...|.+. ++..+.|+++.....-...-.+...|..+..++..++.++-..++ +..+.+++++.....
T Consensus 23 ~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--- 96 (163)
T 2hjv_A 23 FSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAA--- 96 (163)
T ss_dssp HHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT---
T ss_pred HHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhh---
Confidence 33444444443 345788888776555555555666788889999999887655555 455678888764321
Q ss_pred HhhccCCCCeeEEEEeCC
Q 009114 200 LSCLSEVPTVRLIVVIGG 217 (543)
Q Consensus 200 ~~~~~~~~~l~~ii~~~~ 217 (543)
.--+.+.+..+|.++.
T Consensus 97 --~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 97 --RGIDIENISLVINYDL 112 (163)
T ss_dssp --TTCCCSCCSEEEESSC
T ss_pred --cCCchhcCCEEEEeCC
Confidence 1114566777777654
No 88
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=22.28 E-value=4.9e+02 Score=26.28 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=61.7
Q ss_pred EEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC--C-------hHhHHHHHH
Q 009114 273 GAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG--D-------NMKLMDDMA 340 (543)
Q Consensus 273 gv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~--~-------~~~l~~~i~ 340 (543)
+-.+|.+.+...+..+.. ..++.++|++..++|-..-+ ....++++..|+..+..+. . ...+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 357899988766555443 36788999999998876422 3346778899998887752 2 567888888
Q ss_pred hhCCeEEEechHHHHHHH
Q 009114 341 ALRPTVFCSVPRLYNRIY 358 (543)
Q Consensus 341 ~~k~t~~~~~P~~l~~l~ 358 (543)
..++..++........+.
T Consensus 126 ~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHCCSEEEECGGGHHHHH
T ss_pred hcCCCEEEecHHHHHHHH
Confidence 999999999887665543
No 89
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=21.57 E-value=1e+02 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCCCeEEEEeecCCCC----CCCCCCCCCCceEEEeCcc
Q 009114 468 PNAACEIKLVDVPEMN----YTSEDQPCPRGEICVRGPL 502 (543)
Q Consensus 468 p~~~~evkivd~~~~~----~~~~~~p~~~GEi~v~g~~ 502 (543)
.+|+-+|.|+++.++. |.-.++++ .|+||+.|..
T Consensus 38 Il~~EkV~IvNvnNG~RfeTYvI~GerG-SG~I~lNGAA 75 (139)
T 2c45_A 38 LLEGEQVTIVDIDNGARLVTYAITGERG-SGVIGINGAA 75 (139)
T ss_dssp CCSSCCEEEEETTTCCEEEECEEEECTT-TTCEEEESST
T ss_pred CCCCCEEEEEECCCCceEEEEEEEccCC-CCEEEEchHH
Confidence 5688899999987775 34444432 5889999964
No 90
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=21.02 E-value=4.7e+02 Score=23.71 Aligned_cols=77 Identities=10% Similarity=-0.004 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCC
Q 009114 84 NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163 (543)
Q Consensus 84 ~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~ 163 (543)
++++..+..|+...+... |...-+|-..++.++.+++.+.+..|.+.|. ...++.-|+.-.+.....-...+.
T Consensus 18 v~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCNTas~~~l~~lr~~~~i 90 (267)
T 2gzm_A 18 VAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI----KMLVIACNTATAVVLEEMQKQLPI 90 (267)
T ss_dssp HHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchhhHHHHHHHHHhCCC
Confidence 445666778988877666 6655566667999999999999999987665 355556666654332222233454
Q ss_pred eEEe
Q 009114 164 ISVP 167 (543)
Q Consensus 164 ~~vp 167 (543)
.++-
T Consensus 91 Pvig 94 (267)
T 2gzm_A 91 PVVG 94 (267)
T ss_dssp CEEE
T ss_pred CEEe
Confidence 4443
No 91
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.98 E-value=2.4e+02 Score=26.61 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=37.7
Q ss_pred CCCCCEEEEEccCChhHHHHHHHHHhcCCeEE--ecCC--CCCHHHHHHHHHhcCccEEEec
Q 009114 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISV--PLYD--TLGPDAVKYIVNHASVQAVFCV 192 (543)
Q Consensus 135 ~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~v--pl~~--~l~~~~l~~il~~~~~~~vi~~ 192 (543)
+++||.|.+..+.-..+.- ++...|+.++ |+++ .+..++++..++..+.++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 5789998888776555433 3556776554 4444 3578899999987677777664
No 92
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=20.84 E-value=3.5e+02 Score=22.12 Aligned_cols=86 Identities=10% Similarity=0.009 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH---HhcCccEEEecCcCHHHHH
Q 009114 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV---NHASVQAVFCVPQTLNSLL 200 (543)
Q Consensus 124 ~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il---~~~~~~~vi~~~~~~~~l~ 200 (543)
..+...|.+. ++..+.|++++....-...-.+...|..+..++..++.++-..++ +..+.+++++.....
T Consensus 19 ~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~---- 91 (165)
T 1fuk_A 19 ECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA---- 91 (165)
T ss_dssp HHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGT----
T ss_pred HHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhh----
Confidence 3444444443 345788888776555555555566788888999999877655555 456678888764321
Q ss_pred hhccCCCCeeEEEEeCC
Q 009114 201 SCLSEVPTVRLIVVIGG 217 (543)
Q Consensus 201 ~~~~~~~~l~~ii~~~~ 217 (543)
.--+.+.+..+|.++.
T Consensus 92 -~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 92 -RGIDVQQVSLVINYDL 107 (165)
T ss_dssp -TTCCCCSCSEEEESSC
T ss_pred -cCCCcccCCEEEEeCC
Confidence 1114566777777654
No 93
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=20.17 E-value=2.4e+02 Score=26.94 Aligned_cols=63 Identities=6% Similarity=0.000 Sum_probs=48.7
Q ss_pred HcC-CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc
Q 009114 132 YHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (543)
Q Consensus 132 ~~g-~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~ 194 (543)
+.| +++|.+..+.....-.-..+.++|.+.|+-++.+-|...+..-...++..++++++++..
T Consensus 79 ~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 79 EKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 344 678876666777778888888999999988776666666666777899999999998753
No 94
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=20.06 E-value=71 Score=25.04 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCCCeEEEEeecCCCC----CCCCCCCCCCceEEEeCcc
Q 009114 468 PNAACEIKLVDVPEMN----YTSEDQPCPRGEICVRGPL 502 (543)
Q Consensus 468 p~~~~evkivd~~~~~----~~~~~~p~~~GEi~v~g~~ 502 (543)
.+|+-+|.|+++.++. |.-.|+++ .|+||+.|..
T Consensus 41 i~~~E~V~I~NvnNG~Rf~TYvI~GerG-Sg~I~lNGAA 78 (114)
T 3oug_A 41 IIENEKVQVVNLNNGERLETYVIKGEPN-SKTIALNGPA 78 (114)
T ss_dssp CCTTBEEEEEETTTCCEEEEEEEEECTT-SCCEEEEGGG
T ss_pred CCcCCEEEEEECCCCceEEEEEEEccCC-CCEEEeCCHH
Confidence 5688899999987775 33344432 5899999964
Done!