BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009115
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/518 (50%), Positives = 360/518 (69%), Gaps = 14/518 (2%)
Query: 26 ADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITP 85
A+ E+FL+C S H N+ + K++YTQ++ Y S+L T+QNLRF + TPKPLVI+TP
Sbjct: 1 ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60
Query: 86 IHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENK 145
+ SHIQA I CS+K G+QIR RSGGHD EG+S+ + PFV++D+ N+ SI IDV ++
Sbjct: 61 SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQ 118
Query: 146 TAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIV 205
TAWV+ GATLG++YY I EK+ NL+FP G CP+V L+R YGLAADNI+
Sbjct: 119 TAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNII 178
Query: 206 DARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWD 265
DA +++V G+ LDRKSMGEDLFWAIRGGGG +FG+I AWKIKLV VPS T+F+V++ +
Sbjct: 179 DAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME 238
Query: 266 -QIATKLVHRWQHVAHKLPEDLFIMVFL--RSLSSGTEGNR-TMEAIFQSLFLGGVEKLL 321
KL ++WQ++A+K +DL +M ++++ N+ T+ F S+F GGV+ L+
Sbjct: 239 IHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLV 298
Query: 322 PLMQERFPELGLVKEDCNETSWIQSIMIFNG---FESGE-SLDILLQRTNYSDRRAFKAK 377
LM + FPELG+ K DC E SWI + + ++G F + +ILL R+ + AF K
Sbjct: 299 DLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRS-AGKKTAFSIK 357
Query: 378 SDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIG 437
DYV++P+P A+ I E+L + + A PYGG M EIS+SAIPFPHRAG +YE+
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417
Query: 438 HLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIG-TNNEGYTSYKE 496
+ W + + +++HINW+R +Y++ TPYVS+NPR AY+NYRDLD+G TN+ +Y +
Sbjct: 418 YTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQ 475
Query: 497 ASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPL 534
A +WG+KYF NF+RLV VKT VDP+NFFRNEQSIPPL
Sbjct: 476 ARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 463 bits (1192), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/513 (46%), Positives = 325/513 (63%), Gaps = 25/513 (4%)
Query: 25 AADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIIT 84
A FL CL+ + +Y + + +Y+SV T++N++F + T KPL IIT
Sbjct: 6 AKQVERDFLTCLTKDIP-----PRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIIT 60
Query: 85 PIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVEN 144
P + SHIQAA+ C +++GM+IRVRSGGHDYEGLS+R+ PF ++DM + ++SID +
Sbjct: 61 PTNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKA 120
Query: 145 KTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNI 204
TAWV GA LG LYY IA+ SP L FPAG C ++ +LLRKYG AADN+
Sbjct: 121 ATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNV 180
Query: 205 VDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPW 264
+DA+++D QGR LDRK+MGED FWAIRGGGG SFG++ +W++KL+ VP VTVF V +
Sbjct: 181 IDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGI 240
Query: 265 DQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLM 324
+ A LV +WQ VA LP+DL I + ++ G A+F++L+LG + L+ LM
Sbjct: 241 KEGAIDLVTKWQTVAPALPDDLMIRIM--AMGQG--------AMFEALYLGTCKDLVLLM 290
Query: 325 QERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAF-KAKSDYVRE 383
RFPELG+ C E +WI+S+ G D LL RT S+ +AF K KSDYV E
Sbjct: 291 TARFPELGMNATHCKEMTWIESVPYIPMGPKGTVRD-LLNRT--SNIKAFGKYKSDYVLE 347
Query: 384 PMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWA 443
P+P E I+ L V+ A + PYGG ++ + +SA PFP R+G ++ I ++V W
Sbjct: 348 PIPKSDWEKIFTWL--VKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWF 405
Query: 444 EDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNN--EGYTSYKEASVWG 501
+G A+ W R++Y +MTPYVSKNPR AY+NYRDLD+G N ++Y VWG
Sbjct: 406 GEG--AAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWG 463
Query: 502 KKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPL 534
+KYF NF+RL K +DP+++FRNEQSIPPL
Sbjct: 464 EKYFKGNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/507 (43%), Positives = 318/507 (62%), Gaps = 21/507 (4%)
Query: 30 ESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVS 89
E FL CL +++Y + + +Y SVL T++N R+S+P KPL IITP VS
Sbjct: 9 EDFLGCLVKEIP-----PRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVS 63
Query: 90 HIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWV 149
HIQ+A+ C +++ ++IRVRSGGHDYEGLS+R+ F ++D+ + ++ +D + +TAWV
Sbjct: 64 HIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWV 123
Query: 150 QVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIVDARM 209
GA LG+LYY I + SP LAFPAG CP++ +LLRKYG+AA+N++D ++
Sbjct: 124 DSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKL 183
Query: 210 IDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIAT 269
+D G+ D+KSMG+D FWA+RGGGG SFG++VAW++KL+ VP TVT+F + + + A
Sbjct: 184 VDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAV 243
Query: 270 KLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFP 329
++++WQ VA +LP DL I R ++ G +A F++++LG + L PLM +FP
Sbjct: 244 DIINKWQVVAPQLPADLMI----RIIAQGP------KATFEAMYLGTCKTLTPLMSSKFP 293
Query: 330 ELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIA 389
ELG+ CNE SWIQSI + D LL R N S + + KSDYV +P P
Sbjct: 294 ELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQN-SFKPFAEYKSDYVYQPFPKTV 352
Query: 390 LEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDA 449
E I V+ A + F PYG +S +SA PFPHR G ++ I ++ W G A
Sbjct: 353 WEQILNTWL-VKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPG--A 409
Query: 450 SQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNN--EGYTSYKEASVWGKKYFNH 507
+ ++W +++Y+YM PYVSKNPR AY NYRD+D+G N ++Y VWG+KYF
Sbjct: 410 AAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKG 469
Query: 508 NFDRLVHVKTSVDPDNFFRNEQSIPPL 534
NF+RL K VDP ++FRNEQSIPPL
Sbjct: 470 NFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 214/533 (40%), Positives = 303/533 (56%), Gaps = 27/533 (5%)
Query: 12 TLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRF 71
+L++ LS A A + L CL+ N V +S ++ L L++QN F
Sbjct: 10 SLSIFLSLLNCAEAGN---DLLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLF 63
Query: 72 STPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIID 131
KP II P + I+C +K IR+RSGGH YEGLS+ + ++PF++ID
Sbjct: 64 QNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILID 121
Query: 132 MINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXX 191
++NL+ +SID+E++TAWV+ G+TLG+LYY I E S L F AG CP+V
Sbjct: 122 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 181
Query: 192 ILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDV 251
++ RKYGLAADN+VDA +ID G LDR++MGED+FWAIRGGGG +G I AWKIKL+ V
Sbjct: 182 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 241
Query: 252 PSTVTVFTVRR--PWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIF 309
P VTVF V + D+ AT L+H+WQ VA +L ED + V L E + +
Sbjct: 242 PEKVTVFRVTKNVAIDE-ATSLLHKWQFVAEELEEDFTLSV----LGGADEKQVWLTMLG 296
Query: 310 QSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYS 369
L V K FPELGLV+ED E SW +S G E+ L+ R
Sbjct: 297 FHFGLKTVAK--STFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKF 351
Query: 370 DRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHR 429
D RAFK K D +EP+P A G+ ERLSK + +GG+MS+IS PFPHR
Sbjct: 352 DERAFKTKVDLTKEPLPSKAFYGLLERLSK--EPNGFIALNGFGGQMSKISSDFTPFPHR 409
Query: 430 AGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNE 489
+G + ++V W + ++W+ ++Y +M P+VSKNPR Y+N+ DLD+G +
Sbjct: 410 SGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDW 469
Query: 490 GYTSYKEASV-----WGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSSW 537
G + ++ WG+ YF N++RL+ KT +DP+N F + QSIPP++++
Sbjct: 470 GNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANF 522
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/518 (40%), Positives = 295/518 (56%), Gaps = 24/518 (4%)
Query: 26 ADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITP 85
A+ L CL+ N V +S ++ L L++QN F KP II P
Sbjct: 2 AEAGNDLLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILP 58
Query: 86 IHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENK 145
+ I+C +K IR+RSGGH YEGLS+ + ++PF++ID++NL+ +SID+E++
Sbjct: 59 GSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESE 116
Query: 146 TAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIV 205
TAWV+ G+TLG+LYY I E S L F AG CP+V ++ RKYGLAADN+V
Sbjct: 117 TAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVV 176
Query: 206 DARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR--P 263
DA +ID G LDR++MGED+FWAIRGGGG +G I AWKIKL+ VP VTVF V +
Sbjct: 177 DAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVA 236
Query: 264 WDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPL 323
D+ AT L+H+WQ VA +L ED + V L E + + L V K
Sbjct: 237 IDE-ATSLLHKWQFVAEELEEDFTLSV----LGGADEKQVWLTMLGFHFGLKTVAK--ST 289
Query: 324 MQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVRE 383
FPELGLV+ED E SW +S G E+ L+ R D RAFK K D +E
Sbjct: 290 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKE 346
Query: 384 PMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWA 443
P+P A G+ ERLSK + +GG+MS+IS PFPHR+G + ++V W
Sbjct: 347 PLPSKAFYGLLERLSK--EPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN 404
Query: 444 EDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASV---- 499
+ ++W+ ++Y +M P+VSKNPR Y+N+ DLD+G + G + ++
Sbjct: 405 QSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISR 464
Query: 500 -WGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSS 536
WG+ YF N++RL+ KT +DP+N F + QSIPP+++
Sbjct: 465 SWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 502
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/518 (40%), Positives = 295/518 (56%), Gaps = 24/518 (4%)
Query: 26 ADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITP 85
A+ L CL+ N V +S ++ L L++QN F KP II P
Sbjct: 2 AEAGNDLLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILP 58
Query: 86 IHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENK 145
+ I+C +K IR+RSGGH YEGLS+ + ++PF++ID++NL+ +SID+E++
Sbjct: 59 GSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESE 116
Query: 146 TAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIV 205
TAWV+ G+TLG+LYY I E S L F AG CP+V ++ RKYGLAADN+V
Sbjct: 117 TAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVV 176
Query: 206 DARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR--P 263
DA +ID G LDR++MGED+FWAIRGGGG +G I AWKIKL+ VP VTVF V +
Sbjct: 177 DAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVA 236
Query: 264 WDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPL 323
D+ AT L+H+WQ VA +L ED + V L E + + L V K
Sbjct: 237 IDE-ATSLLHKWQFVAEELEEDFTLSV----LGGADEKQVWLTMLGFHFGLKTVAK--ST 289
Query: 324 MQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVRE 383
FPELGLV+ED E SW +S G E+ L+ R D RAFK K D +E
Sbjct: 290 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKE 346
Query: 384 PMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWA 443
P+P A G+ ERLSK + +GG+MS+IS PFPHR+G + ++V W
Sbjct: 347 PLPSKAFYGLLERLSK--EPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN 404
Query: 444 EDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASV---- 499
+ ++W+ ++Y +M P+VSKNPR Y+N+ DLD+G + G + ++
Sbjct: 405 QSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISR 464
Query: 500 -WGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSS 536
WG+ YF N++RL+ KT +DP+N F + QSIPP+++
Sbjct: 465 SWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 502
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/511 (40%), Positives = 292/511 (57%), Gaps = 24/511 (4%)
Query: 32 FLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHI 91
L CL+ N V +S ++ L L++QN F KP II P +
Sbjct: 2 LLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 92 QAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQV 151
I+C +K IR+RSGGH YEGLS+ + ++PF++ID++NL+ +SID+E++TAWV+
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 152 GATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIVDARMID 211
G+TLG+LYY I E S L F AG CP+V ++ RKYGLAADN+VDA +ID
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 212 VQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR--PWDQIAT 269
G LDR++MGED+FWAIRGGGG +G I AWKIKL+ VP VTVF V + D+ AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE-AT 235
Query: 270 KLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFP 329
L+H+WQ VA +L ED + V L E + + L V K FP
Sbjct: 236 SLLHKWQFVAEELEEDFTLSV----LGGADEKQVWLTMLGFHFGLKTVAK--STFDLLFP 289
Query: 330 ELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIA 389
ELGLV+ED E SW +S G E+ L+ R D RAFK K D +EP+P A
Sbjct: 290 ELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKA 346
Query: 390 LEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDA 449
G+ ERLSK + +GG+MS+IS PFPHR+G + ++V W +
Sbjct: 347 FYGLLERLSK--EPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 404
Query: 450 SQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASV-----WGKKY 504
++W+ ++Y +M P+VSKNPR Y+N+ DLD+G + G + ++ WG+ Y
Sbjct: 405 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 464
Query: 505 FNHNFDRLVHVKTSVDPDNFFRNEQSIPPLS 535
F N++RL+ KT +DP+N F + QSIPP++
Sbjct: 465 FLSNYERLIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/511 (40%), Positives = 291/511 (56%), Gaps = 24/511 (4%)
Query: 32 FLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHI 91
L CL+ N V +S ++ L L++QN F KP II P +
Sbjct: 5 LLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 61
Query: 92 QAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQV 151
I+C +K IR+RSGG YEGLS+ + ++PF++ID++NL+ +SID+E++TAWV+
Sbjct: 62 SNTIRCIRKGSWTIRLRSGGASYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 119
Query: 152 GATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIVDARMID 211
G+TLG+LYY I E S L F AG CP+V ++ RKYGLAADN+VDA +ID
Sbjct: 120 GSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 179
Query: 212 VQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR--PWDQIAT 269
G LDR++MGED+FWAIRGGGG +G I AWKIKL+ VP VTVF V + D+ AT
Sbjct: 180 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE-AT 238
Query: 270 KLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFP 329
L+H+WQ VA +L ED + V L E + + L V K FP
Sbjct: 239 SLLHKWQFVAEELEEDFTLSV----LGGADEKQVWLTMLGFHFGLKTVAK--STFDLLFP 292
Query: 330 ELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIA 389
ELGLV+ED E SW +S G E+ L+ R D RAFK K D +EP+P A
Sbjct: 293 ELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKA 349
Query: 390 LEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDA 449
G+ ERLSK + +GG+MS+IS PFPHR+G + ++V W +
Sbjct: 350 FYGLLERLSK--EPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 407
Query: 450 SQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASV-----WGKKY 504
++W+ ++Y +M P+VSKNPR Y+N+ DLD+G + G + ++ WG+ Y
Sbjct: 408 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 467
Query: 505 FNHNFDRLVHVKTSVDPDNFFRNEQSIPPLS 535
F N++RL+ KT +DP+N F + QSIPP++
Sbjct: 468 FLSNYERLIRAKTLIDPNNVFNHPQSIPPMA 498
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/511 (40%), Positives = 291/511 (56%), Gaps = 24/511 (4%)
Query: 32 FLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHI 91
L CL+ N V +S ++ L L++QN F KP II P +
Sbjct: 2 LLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 92 QAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQV 151
I+C +K IR+RSGGH YEGLS+ + ++PF++ID++NL+ +SID+E++TAWV+
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 152 GATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIVDARMID 211
G+TLG+LYY I E S L F AG P+V ++ RKYGLAADN+VDA +ID
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 212 VQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR--PWDQIAT 269
G LDR++MGED+FWAIRGGGG +G I AWKIKL+ VP VTVF V + D+ AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE-AT 235
Query: 270 KLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFP 329
L+H+WQ VA +L ED + V L E + + L V K FP
Sbjct: 236 SLLHKWQFVAEELEEDFTLSV----LGGADEKQVWLTMLGFHFGLKTVAK--STFDLLFP 289
Query: 330 ELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIA 389
ELGLV+ED E SW +S G E+ L+ R D RAFK K D +EP+P A
Sbjct: 290 ELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKA 346
Query: 390 LEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDA 449
G+ ERLSK + +GG+MS+IS PFPHR+G + ++V W +
Sbjct: 347 FYGLLERLSK--EPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 404
Query: 450 SQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASV-----WGKKY 504
++W+ ++Y +M P+VSKNPR Y+N+ DLD+G + G + ++ WG+ Y
Sbjct: 405 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 464
Query: 505 FNHNFDRLVHVKTSVDPDNFFRNEQSIPPLS 535
F N++RL+ KT +DP+N F + QSIPP++
Sbjct: 465 FLSNYERLIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/512 (40%), Positives = 292/512 (57%), Gaps = 24/512 (4%)
Query: 32 FLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHI 91
L CL+ N V +S ++ L L++QN F KP II P +
Sbjct: 2 LLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 92 QAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQV 151
I+C +K IR+RSGGH YEGLS+ + ++PF++ID++NL+ +SID+E++TAWV+
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 152 GATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIVDARMID 211
G+TLG+LYY I E S L F AG P+V ++ RKYGLAADN+VDA +ID
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 212 VQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR--PWDQIAT 269
G LDR++MGED+FWAIRGGGG +G I AWKIKL+ VP VTVF V + D+ AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE-AT 235
Query: 270 KLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFP 329
L+H+WQ VA +L ED + V L E + + L V K FP
Sbjct: 236 SLLHKWQFVAEELEEDFTLSV----LGGADEKQVWLTMLGFHFGLKTVAK--STFDLLFP 289
Query: 330 ELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIA 389
ELGLV+ED E SW +S G E+ L+ R D RAFK K D +EP+P A
Sbjct: 290 ELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKA 346
Query: 390 LEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDA 449
G+ ERLSK + +GG+MS+IS PFPHR+G + ++V W +
Sbjct: 347 FYGLLERLSK--EPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 404
Query: 450 SQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASV-----WGKKY 504
++W+ ++Y +M P+VSKNPR Y+N+ DLD+G + G + ++ WG+ Y
Sbjct: 405 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 464
Query: 505 FNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSS 536
F N++RL+ KT +DP+N F + QSIPP+++
Sbjct: 465 FLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 496
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 109/473 (23%), Positives = 191/473 (40%), Gaps = 54/473 (11%)
Query: 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI 138
P I +HIQ+A++C++K +++ +SGGH Y F V +D + + I
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRM-IDVI 95
Query: 139 SIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYG 198
S + + A V+ GA LG L + +K A G+CP V +G
Sbjct: 96 SYNDKTGIAHVEPGARLGHLATVLNDKY-GRAISHGTCPGVGISGHFAHGGFGFSSHMHG 154
Query: 199 LAADNIVDARMIDVQGRFLDRKSM-GEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTV 257
LA D++V ++ GR ++ + DLFW I+ G G++FG++ WK+ P +T
Sbjct: 155 LAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVLTR 213
Query: 258 FTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGV 317
F V W + L + ED V R ++ + L+ G
Sbjct: 214 FGVTLNWKNKTSAL------KGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTP 267
Query: 318 EKLLPLMQERFPEL--GLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFK 375
E+ Q L G V +WI+S++ ++ F + +D + + F
Sbjct: 268 EQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNF---DHVDFITPQP----VENFY 320
Query: 376 AKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFV----PYGGKMSEISK---SAIPFPH 428
AKS ++ + G A++ + V + F+ +GGK S+++K + +PH
Sbjct: 321 AKSLTLKS-IKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPH 379
Query: 429 RAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRA-------AYINYRD 481
R LW D + + + ++ +V+ +A YINY D
Sbjct: 380 RD---------KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYAD 430
Query: 482 LDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPL 534
+ + Y + K Y+ N RL +K DP + F Q++ P+
Sbjct: 431 PRM---DRDYAT--------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 123/504 (24%), Positives = 214/504 (42%), Gaps = 57/504 (11%)
Query: 62 LELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRT 121
L+L N RF+ +P I + A++ + + G ++ VRSGGH +E
Sbjct: 45 LKLRGANSRFNG----EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNP 100
Query: 122 SYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXX 181
VIIDM L+ I+ D ++ G TL ++Y ++ N+ P G C V
Sbjct: 101 DVK---VIIDMSLLTEIAYDPSMNAFLIEPGNTLSEVYEKLYLGW-NVTIPGGVCGGVGV 156
Query: 182 XXXXXXXXXXILLRKYGLAADNI--VDARMIDVQGR------FLDRKSMGEDLFWAIRGG 233
L R++G D + V+ +++ QG+ +R DL+WA GG
Sbjct: 157 GGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGG 216
Query: 234 GGASFGVIVAWKIKLV-DVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFL 292
GG +FGV+ + +++ DV + P + + + W + + L
Sbjct: 217 GGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFDWAGMT-----EAAFSRLL 271
Query: 293 RSLSSGTEGNRTMEAIFQSLF---LGGVEKLLPLMQER---FP-ELGLVKEDCNETSWIQ 345
R+ E N ++ + L+ + G E +P M E P ++ + D
Sbjct: 272 RNHGEWYERNSGPDSPYTGLWSQLMIGNE--VPGMGESGFMMPIQVDATRPDARRLLDAH 329
Query: 346 SIMIFNGFESGESLDILLQR----TNYSDRR--AFKAKSDYVREPMPGIALEGIYERLSK 399
+ +G E + + QR T R A K K+ Y+R+ + ++ +YE ++
Sbjct: 330 IEAVIDGVPPAEVPEPIEQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTH 389
Query: 400 VEA-EAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIR 458
++ + ++ + YGGK++ + +A P R I ++ ++ WA G +A +H+ W+R
Sbjct: 390 MDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNEA--KHLTWVR 446
Query: 459 ELYSYM------TPYVSKNPRAAYINYRDLDI---GTNNEGYTSYKEASVWGKKYFNHNF 509
+LY+ + P + AYINY D D+ G N G W Y+ N
Sbjct: 447 KLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLNTSGVP-------WHDLYYKGNH 499
Query: 510 DRLVHVKTSVDPDNFFRNEQSIPP 533
RL VK + DP N F + SI P
Sbjct: 500 PRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 203/498 (40%), Gaps = 75/498 (15%)
Query: 78 KPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFV--IIDMINL 135
+P V+ + A+ + G +I VRSGGH +EG + P V +IDM +
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF-----VDDPAVRAVIDMSQM 109
Query: 136 SSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLR 195
+ D + V+ GATLG+ Y R + PAG CP V L R
Sbjct: 110 RQVFYDSGKRAFAVEPGATLGETY-RALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSR 168
Query: 196 KYGLAADNI--VDARMIDVQGRFLDRK----SMGED----LFWAIRGGGGASFGVIVAWK 245
+ G+ AD++ V+ ++D GR RK S +D L+WA GGGG +FG++ +
Sbjct: 169 RDGVVADHLYAVEVVVVDASGRA--RKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYW 226
Query: 246 IK------------LVDVPSTVTVFTVRRPWDQIA----TKLV------HRWQHVAHKLP 283
+ L P++ V W + T+++ H+ A
Sbjct: 227 FRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSALTEEAFTRIIDNHGAWHQSNSAAGTPY 286
Query: 284 EDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETS- 342
+ + +L S ++G + + I L G E LL E V+ ++
Sbjct: 287 ASMHSVFYLNSRAAG----QILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTE 342
Query: 343 -WIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVE 401
W+++ + N F++G RT K+K Y+R+P +Y LS
Sbjct: 343 PWLRATLA-NKFDTGG-----FDRT--------KSKGAYLRKPWTAAQAATLYRHLSADS 388
Query: 402 AEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELY 461
++ YGGK++ + ++A R +I ++ W + D + ++ WIRE+Y
Sbjct: 389 QVWGEVSLYSYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDA--NLAWIREIY 445
Query: 462 SYM------TPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHV 515
+ P +INY D+D+ + TS W Y+ N+ RL V
Sbjct: 446 REIFATTGGVPVPDDRTEGTFINYPDVDL-VDERWNTS---GVPWYTLYYKGNYPRLQKV 501
Query: 516 KTSVDPDNFFRNEQSIPP 533
K DP + FR+ S+ P
Sbjct: 502 KARWDPRDVFRHALSVRP 519
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 132/521 (25%), Positives = 213/521 (40%), Gaps = 96/521 (18%)
Query: 67 QNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSP 126
+NLRF P+ + ++ + I+ + + + G ++ VRSGGH YE +
Sbjct: 51 ENLRFV--GDPEEIHLVG--SAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVR-- 104
Query: 127 FVIIDMINLSSISIDVENKTAWVQVGATLGQLY---YRIAEKSPNLAFPAGSCPSVXXXX 183
V++DM LS++ D E V+ GATLG +Y +R+ + P G+CP V
Sbjct: 105 -VVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVW----GVTLPGGACPDVGAGG 159
Query: 184 XXXXXXXXILLRKYGLAAD--NIVDARMIDVQGRFLDRKSM---------GEDLFWAIRG 232
L R +G D + V+ ++D G D +++ DL+WA G
Sbjct: 160 HILGGGYGPLSRMHGSIVDYLHAVEVVVVDASG---DARTVIATREPSDPNHDLWWAHTG 216
Query: 233 GGGASFGVIVAWKIKLVDV-------------PSTVTVFTVRRPW---DQIA-TKLVH-- 273
GGG +FGV+V + ++ + P+ V + T PW D+ A +LV
Sbjct: 217 GGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNH 276
Query: 274 -RW--QHVAHKLPE-DLF-IMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERF 328
RW Q+ P DL+ ++ RS S ++A EK L
Sbjct: 277 GRWFEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPD-----AEKRLETYLAAV 331
Query: 329 PELGLVK--EDCNETSWIQSI----MIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVR 382
E V+ D W+ S + +G +G + K K+ Y R
Sbjct: 332 SEGVGVQPHSDTRRLPWLHSTRWPGIAGDGDMTGRA----------------KIKAAYAR 375
Query: 383 EPMPGIALEGIYERLSKVEAE--AAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLV 440
+ +Y RL+ + + A + + YGGK++ + R +I +I ++
Sbjct: 376 RSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVT 434
Query: 441 LWAEDGIDASQRHINWIRELYSYM------TPYVSKNPRAAYINYRDLDIGTNNEGYTSY 494
W + D H+ WIRELY + P AY+NY D+D+ + E TS
Sbjct: 435 TWEDPAQDPV--HVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDL-ADEEWNTS- 490
Query: 495 KEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQS--IPP 533
W + Y+ + RL VK DP N FR+ S +PP
Sbjct: 491 --GVPWSELYYKDAYPRLQAVKARWDPRNVFRHALSVRVPP 529
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/488 (22%), Positives = 195/488 (39%), Gaps = 71/488 (14%)
Query: 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI 138
P I P I AA++C G+QI + GGH Y F +++++ + +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGE--DGHLMLELDRMYRV 100
Query: 139 SIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYG 198
S+D +N A +Q GA LG + ++ N A G+CP+V +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQG-NRALSHGTCPAVGVGGHVLGGGYGFATHTHG 158
Query: 199 LAADNIVDARMIDVQGRFLD-RKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTV 257
L D ++ A ++ + ++ DLFWA+RGGGG F ++ ++ + P +T
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 258 FTVRRPWDQ----IATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLF 313
+ V W++ K + W + +P +L + + + + + EGN F
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANALNWEGN----------F 265
Query: 314 LGGVEKLLPLMQERFPELG--LVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDR 371
G + L ++Q + G ET W I N + G L+I NY
Sbjct: 266 FGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQI---NTYLYGADLNITY---NYDVH 319
Query: 372 RAFKAKSDYVREPMPGIALEGI-------YERLSKVEAEAAQLFFVPYGGK---MSEISK 421
F A S P ++ E I ++ S + + +GGK ++ +S
Sbjct: 320 EYFYANS----LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSN 375
Query: 422 SAIPFPHRAGNIYEIGHLVLWA-EDGI-DASQRHINWIRELYSYMTPYVS-------KNP 472
+ HR L LW D I D + + +M +V+ ++
Sbjct: 376 DETAYAHR-------DQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDR 428
Query: 473 RAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIP 532
+ Y NY D + + +EA K Y+ N ++L +K DP++ F N S+
Sbjct: 429 KGKYFNYADTTL--------TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVE 477
Query: 533 PLSSWKKK 540
P++ ++K
Sbjct: 478 PIAYLEQK 485
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 111/472 (23%), Positives = 188/472 (39%), Gaps = 63/472 (13%)
Query: 78 KPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSS 137
+P +I + + +++ + G++I VRSGGH+ G + N +++D+ ++S
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYA----TNDGGIVLDLRLMNS 93
Query: 138 ISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKY 197
I ID A + G G L A+ LA G P V L KY
Sbjct: 94 IHIDTAGSRARIGGGVISGDLVKEAAKFG--LAAVTGMHPKVGFCGLALNGGVGFLTPKY 151
Query: 198 GLAADNIVDARMIDVQGRFL----DRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPS 253
GLA+DNI+ A ++ G + D + +LFWA+R G G +FGV+ +++L ++P
Sbjct: 152 GLASDNILGATLVTATGDVIYCSDDERP---ELFWAVR-GAGPNFGVVTEVEVQLYELPR 207
Query: 254 TVTV-FTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSL 312
+ F P L+ +++ + ++ VF+ G + NR
Sbjct: 208 KMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFV-----GVDENRAPSVTVCVG 262
Query: 313 FLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNG----FESGES---LDILLQR 365
LGG++ + R LG D ++ N FE G S +D +
Sbjct: 263 HLGGLD-IAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAM 321
Query: 366 TNYSDRRAFKAKSD-YVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAI 424
N A D +V EP G ++ K+E E +P+G +
Sbjct: 322 PNARFAEAIAGNLDKFVSEPASGGSV--------KLEIEG-----MPFG------NPKRT 362
Query: 425 PFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDI 484
P HR + + L W+ S+++ REL + + A + +
Sbjct: 363 PARHR--DAMGVLALAEWS-GAAPGSEKYPELARELDAALL--------RAGVTTSGFGL 411
Query: 485 GTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSS 536
NN T+ A V+ + ++ RL VK DP+N FR+ +I P S
Sbjct: 412 LNNNSEVTAEMVAEVYKPEVYS----RLAAVKREYDPENRFRHNYNIDPEGS 459
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 109/488 (22%), Positives = 194/488 (39%), Gaps = 71/488 (14%)
Query: 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI 138
P I P I AA++C G+QI + GGH Y F +++++ + +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGE--DGHLMLELDRMYRV 100
Query: 139 SIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYG 198
S+D +N A +Q GA LG + ++ N A G+ P+V +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQG-NRALSHGTAPAVGVGGHVLGGGYGFATHTHG 158
Query: 199 LAADNIVDARMIDVQGRFLD-RKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTV 257
L D ++ A ++ + ++ DLFWA+RGGGG F ++ ++ + P +T
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 258 FTVRRPWDQ----IATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLF 313
+ V W++ K + W + +P +L + + + + + EGN F
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANALNWEGN----------F 265
Query: 314 LGGVEKLLPLMQERFPELG--LVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDR 371
G + L ++Q + G ET W I N + G L+I NY
Sbjct: 266 FGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQI---NTYLYGADLNITY---NYDVH 319
Query: 372 RAFKAKSDYVREPMPGIALEGI-------YERLSKVEAEAAQLFFVPYGGK---MSEISK 421
F A S P ++ E I ++ S + + +GGK ++ +S
Sbjct: 320 EYFYANS----LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSN 375
Query: 422 SAIPFPHRAGNIYEIGHLVLWA-EDGI-DASQRHINWIRELYSYMTPYVS-------KNP 472
+ HR L LW D I D + + +M +V+ ++
Sbjct: 376 DETAYAHR-------DQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDR 428
Query: 473 RAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIP 532
+ Y NY D + + +EA K Y+ N ++L +K DP++ F N S+
Sbjct: 429 KGKYFNYADTTL--------TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVE 477
Query: 533 PLSSWKKK 540
P++ ++K
Sbjct: 478 PIAYLEQK 485
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 127/526 (24%), Positives = 206/526 (39%), Gaps = 101/526 (19%)
Query: 57 SYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGH---D 113
S+S ++ F PATP +V A+++ + G + RSGGH D
Sbjct: 24 SHSDNHRFVVEPEEFFLPATPDDVV-----------ASLQKAVTEGRGVACRSGGHCGQD 72
Query: 114 YEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPA 173
+ G R +++D+ NL +I + V GAT+ Q+ + + N A P
Sbjct: 73 FVGTPRRD------LVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRW-NAALPL 125
Query: 174 GSCPSVXXXXXXXXXXXXILLRKYGLAADNI--VDARMID-------VQGRFLDRKSMGE 224
G+C +V L R+ GL D++ V+ ++D V R D +GE
Sbjct: 126 GACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE 185
Query: 225 DLFWAIRGGGGASFGVIVAWKIKL--------VDVPSTVTVFTVRR---PW---DQIATK 270
LFWA GGGG +FGV+ A++ + V +P V++ PW D+ +
Sbjct: 186 -LFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMIDETSFV 244
Query: 271 LVHR----WQHVAHKLP----EDLFIMVFLRSLSSGT-------EGNRTMEAIFQSLFLG 315
V R W H H P LF F+ +SSG + + E + F+
Sbjct: 245 TVMRRFFEW-HERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVA 303
Query: 316 GVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFK 375
+ + ++ P G++ SW+ + + G D++ R+
Sbjct: 304 SLTEGTGVVG--IPRGGVM-------SWLTGTRYMSQADCG---DVMGARS--------A 343
Query: 376 AKSDYVREPMPGIALEGIYERL-SKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIY 434
+KS Y R L ++ L + +A+ + F YGG+++ S P R ++
Sbjct: 344 SKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVV 402
Query: 435 EIGHLVLWAEDGIDASQRHINWIRELYS------YMTPYVSKNPRAAYINYRD---LDIG 485
+ W + +D + H+ W+R LY P YINY D LD
Sbjct: 403 KSSWFSAWQDAELD--ELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPA 460
Query: 486 TNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSI 531
N G W Y+ N+ RL K + DP N F + SI
Sbjct: 461 RNRSG-------EPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMIN 134
A P +T V +Q +K ++ + I S G ++ G VI+D+
Sbjct: 54 AAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKK 112
Query: 135 LSSI-SIDVENKTAWVQVGATLGQLYYRIAEKS 166
++ I ID E A V+ G T GQ+Y I E +
Sbjct: 113 MNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMIN 134
A P +T V +Q +K ++ + I S G ++ G VI+D+
Sbjct: 53 AAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKK 111
Query: 135 LSSI-SIDVENKTAWVQVGATLGQLYYRIAEKS 166
++ I ID E A V+ G T GQ+Y I E +
Sbjct: 112 MNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|3VP7|A Chain A, Crystal Structure Of The Beta-Alpha Repeated,
Autophagy-Specific (Bara) Domain Of Vps30ATG6
Length = 220
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 118 SFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNL 169
+F+ S++ PF I+ + L SI E+ W ++ A LGQL +A + NL
Sbjct: 7 TFKISHSGPFATINGLRLGSIP---ESVVPWKEINAALGQLILLLATINKNL 55
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 6/185 (3%)
Query: 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI 138
P +I+ P ++ ++ + KY + I GG + G S V IDM ++ +
Sbjct: 138 PDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKV 197
Query: 139 S-IDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKY 197
+D TA +QVG +L ++ ++ +L S KY
Sbjct: 198 LWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKY 257
Query: 198 GLAADNIVDARMIDVQG----RFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPS 253
G D V R + G R R G + I G G + G+I +K+ VP
Sbjct: 258 GDIEDMAVSFRTVTPTGTLELRNGARSGAGINYKHIILGSEG-TLGIITEAVMKVHAVPQ 316
Query: 254 TVTVF 258
V +
Sbjct: 317 AVEYY 321
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 469 SKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDN 523
++N +AY+ ++ + GYT+ K G YF+ + T+VDP++
Sbjct: 367 AQNQMSAYVELQEREFAAEERGYTATKHQREVGAGYFD-------RIATTVDPNS 414
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 469 SKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDN 523
++N +AY+ ++ + GYT+ K G YF+ + T+VDP++
Sbjct: 367 AQNQMSAYVELQEREFAAEERGYTATKHQREVGAGYFD-------RIATTVDPNS 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,974,323
Number of Sequences: 62578
Number of extensions: 660843
Number of successful extensions: 1548
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 32
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)