Query 009115
Match_columns 543
No_of_seqs 264 out of 2214
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 20:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.3E-39 5E-44 344.8 44.0 209 54-275 46-265 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 1.7E-33 3.7E-38 297.9 34.2 196 71-280 7-205 (438)
3 TIGR01679 bact_FAD_ox FAD-link 100.0 1.7E-32 3.7E-37 290.0 31.5 174 71-255 4-179 (419)
4 TIGR01677 pln_FAD_oxido plant- 100.0 2.4E-32 5.1E-37 294.8 32.8 181 71-255 24-215 (557)
5 COG0277 GlcD FAD/FMN-containin 100.0 1.4E-32 2.9E-37 296.2 30.0 187 75-266 28-221 (459)
6 PLN02805 D-lactate dehydrogena 100.0 2.8E-33 6.2E-38 302.6 23.5 193 77-275 132-331 (555)
7 TIGR01676 GLDHase galactonolac 100.0 2.3E-32 5E-37 290.9 22.6 196 70-279 53-251 (541)
8 PRK11230 glycolate oxidase sub 100.0 3.8E-32 8.2E-37 292.4 23.1 197 75-275 52-254 (499)
9 TIGR00387 glcD glycolate oxida 100.0 1.4E-30 3.1E-35 275.7 20.1 190 82-275 1-197 (413)
10 KOG1231 Proteins containing th 100.0 1.1E-29 2.4E-34 255.2 22.8 178 71-253 56-240 (505)
11 PRK11282 glcE glycolate oxidas 100.0 5.8E-30 1.2E-34 262.0 18.7 170 87-263 3-181 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.8E-28 3.9E-33 263.3 23.1 177 70-255 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 4.4E-27 9.4E-32 211.9 12.5 136 79-218 1-137 (139)
14 PRK11183 D-lactate dehydrogena 99.9 2.2E-24 4.7E-29 226.4 19.3 204 76-283 36-297 (564)
15 PRK13905 murB UDP-N-acetylenol 99.9 6.3E-24 1.4E-28 214.9 16.9 163 75-252 27-193 (298)
16 KOG1233 Alkyl-dihydroxyacetone 99.9 2E-22 4.2E-27 198.5 16.7 201 71-272 153-360 (613)
17 KOG1232 Proteins containing th 99.9 8.9E-23 1.9E-27 200.7 12.2 192 67-262 78-276 (511)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 3E-21 6.5E-26 195.1 14.1 161 75-251 33-197 (305)
19 KOG4730 D-arabinono-1, 4-lacto 99.9 4.7E-21 1E-25 193.2 15.1 182 71-260 42-226 (518)
20 PRK13903 murB UDP-N-acetylenol 99.8 1.8E-20 4E-25 192.2 16.4 164 75-252 29-197 (363)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 1.5E-20 3.2E-25 189.7 14.9 163 75-252 32-196 (302)
22 TIGR00179 murB UDP-N-acetyleno 99.8 1.1E-20 2.3E-25 189.5 13.7 162 75-250 9-174 (284)
23 PRK13906 murB UDP-N-acetylenol 99.8 6.9E-20 1.5E-24 185.2 14.8 161 76-251 34-197 (307)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 2.5E-18 5.5E-23 173.1 17.8 166 75-252 17-193 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 1.7E-16 3.8E-21 159.2 13.6 160 75-252 30-194 (297)
26 KOG1262 FAD-binding protein DI 99.7 5.2E-17 1.1E-21 160.8 9.3 170 85-256 60-233 (543)
27 COG0812 MurB UDP-N-acetylmuram 99.7 1.2E-15 2.7E-20 150.1 14.5 164 74-251 16-183 (291)
28 PF08031 BBE: Berberine and be 99.6 1.6E-16 3.5E-21 114.2 2.8 47 475-532 1-47 (47)
29 PRK14650 UDP-N-acetylenolpyruv 99.6 4.7E-15 1E-19 148.4 13.9 163 75-253 29-196 (302)
30 PRK00046 murB UDP-N-acetylenol 99.6 5.2E-15 1.1E-19 150.2 13.0 161 75-251 17-188 (334)
31 PRK14648 UDP-N-acetylenolpyruv 99.6 3.5E-14 7.7E-19 143.9 14.1 165 75-252 26-237 (354)
32 PRK14651 UDP-N-acetylenolpyruv 99.4 4.8E-12 1E-16 125.0 15.3 147 78-251 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.0 1.1E-09 2.4E-14 107.3 10.8 144 76-253 16-161 (257)
34 PF00941 FAD_binding_5: FAD bi 95.3 0.02 4.4E-07 53.2 4.4 105 79-189 2-116 (171)
35 PRK09799 putative oxidoreducta 95.0 0.069 1.5E-06 53.1 7.3 143 81-247 4-155 (258)
36 TIGR03312 Se_sel_red_FAD proba 93.9 0.18 3.9E-06 50.2 7.5 142 82-247 4-154 (257)
37 PRK09971 xanthine dehydrogenas 93.6 0.13 2.9E-06 52.1 6.1 153 81-251 6-176 (291)
38 PF09265 Cytokin-bind: Cytokin 92.8 0.056 1.2E-06 53.9 1.8 33 498-531 248-280 (281)
39 TIGR02963 xanthine_xdhA xanthi 92.5 0.3 6.5E-06 52.8 7.0 155 79-248 192-358 (467)
40 TIGR03195 4hydrxCoA_B 4-hydrox 90.8 0.4 8.6E-06 49.2 5.5 102 81-188 6-117 (321)
41 TIGR03199 pucC xanthine dehydr 89.4 0.47 1E-05 47.4 4.6 97 85-188 1-109 (264)
42 PF04030 ALO: D-arabinono-1,4- 86.1 0.66 1.4E-05 46.1 3.3 27 500-528 228-254 (259)
43 PF02913 FAD-oxidase_C: FAD li 85.4 1.8 3.9E-05 41.9 6.1 28 499-526 216-244 (248)
44 PLN00107 FAD-dependent oxidore 84.5 1.2 2.6E-05 43.7 4.1 22 507-528 176-197 (257)
45 PLN00192 aldehyde oxidase 81.7 3.1 6.8E-05 51.0 7.1 107 79-188 233-352 (1344)
46 PLN02906 xanthine dehydrogenas 81.7 2 4.4E-05 52.5 5.5 79 80-164 229-309 (1319)
47 TIGR02969 mam_aldehyde_ox alde 80.3 4.5 9.7E-05 49.6 7.7 78 80-163 237-316 (1330)
48 COG1319 CoxM Aerobic-type carb 74.4 11 0.00025 37.8 7.5 76 79-159 3-80 (284)
49 COG4630 XdhA Xanthine dehydrog 63.7 16 0.00034 37.9 5.9 140 79-231 203-352 (493)
50 PRK11230 glycolate oxidase sub 63.3 13 0.00029 40.6 5.8 34 499-532 439-473 (499)
51 PLN02805 D-lactate dehydrogena 63.0 18 0.00039 40.1 6.8 35 498-532 515-550 (555)
52 COG4981 Enoyl reductase domain 62.7 13 0.00028 40.2 5.3 68 44-116 122-196 (717)
53 TIGR00387 glcD glycolate oxida 62.6 5.2 0.00011 42.7 2.4 29 499-527 382-411 (413)
54 PF03614 Flag1_repress: Repres 59.7 34 0.00074 30.6 6.5 40 81-120 8-48 (165)
55 PRK11282 glcE glycolate oxidas 45.3 13 0.00028 38.8 1.9 22 506-527 323-345 (352)
56 KOG4730 D-arabinono-1, 4-lacto 44.2 11 0.00024 39.9 1.3 21 507-527 485-505 (518)
57 PF02601 Exonuc_VII_L: Exonucl 43.6 41 0.0009 34.3 5.4 58 48-112 18-87 (319)
58 COG1519 KdtA 3-deoxy-D-manno-o 40.3 1.3E+02 0.0028 32.0 8.3 35 77-111 259-293 (419)
59 PRK00286 xseA exodeoxyribonucl 30.3 60 0.0013 34.8 4.2 57 48-111 139-203 (438)
60 COG4359 Uncharacterized conser 29.5 57 0.0012 30.6 3.2 25 91-115 78-102 (220)
61 cd07033 TPP_PYR_DXS_TK_like Py 24.1 1.1E+02 0.0023 27.7 4.1 30 80-109 125-154 (156)
62 TIGR01676 GLDHase galactonolac 24.0 42 0.00091 37.1 1.6 20 509-528 515-534 (541)
63 PLN02465 L-galactono-1,4-lacto 23.7 42 0.00092 37.3 1.6 27 499-528 538-564 (573)
64 TIGR00178 monomer_idh isocitra 22.9 4E+02 0.0086 29.7 8.5 129 88-231 312-460 (741)
65 cd02429 PTH2_like Peptidyl-tRN 22.9 1.6E+02 0.0034 25.5 4.6 35 70-108 51-85 (116)
66 PRK04322 peptidyl-tRNA hydrola 22.7 1.9E+02 0.0042 24.7 5.2 37 77-113 46-83 (113)
67 cd06568 GH20_SpHex_like A subg 22.5 83 0.0018 32.5 3.4 28 86-113 72-101 (329)
68 PF02779 Transket_pyr: Transke 22.1 1.3E+02 0.0029 27.7 4.4 32 80-111 139-172 (178)
69 COG2144 Selenophosphate synthe 22.0 1.8E+02 0.0038 29.4 5.3 48 50-110 242-290 (324)
70 cd02742 GH20_hexosaminidase Be 22.0 87 0.0019 31.8 3.4 29 85-113 68-98 (303)
71 PF15284 PAGK: Phage-encoded v 21.4 48 0.001 24.9 1.0 17 1-17 1-17 (61)
72 KOG3282 Uncharacterized conser 20.8 1.8E+02 0.0039 27.2 4.7 37 70-108 118-154 (190)
73 COG1154 Dxs Deoxyxylulose-5-ph 20.4 6.7E+02 0.014 28.2 9.7 115 32-162 402-520 (627)
74 TIGR00237 xseA exodeoxyribonuc 20.3 69 0.0015 34.4 2.3 63 48-112 133-199 (432)
75 PLN03158 methionine aminopepti 20.2 1.7E+02 0.0036 31.1 5.1 17 141-157 325-341 (396)
76 PF00728 Glyco_hydro_20: Glyco 20.2 83 0.0018 32.3 2.9 29 85-113 69-99 (351)
77 cd06565 GH20_GcnA-like Glycosy 20.1 99 0.0021 31.4 3.3 24 85-108 56-79 (301)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.3e-39 Score=344.84 Aligned_cols=209 Identities=20% Similarity=0.252 Sum_probs=179.8
Q ss_pred CCCCcHHHHHhhhccccCCCCCCCCceEEEEcCCHHHHHHHHHHHH--HcCCeEEEeeCCCCCCCCCcccCCCCCeEEEE
Q 009115 54 YNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQ--KYGMQIRVRSGGHDYEGLSFRTSYNSPFVIID 131 (543)
Q Consensus 54 ~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~--~~~~~v~~~ggGh~~~g~~~~~~~~~~givId 131 (543)
+...++.+. ..|+......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+ |++||
T Consensus 46 d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~----GivId 115 (525)
T PLN02441 46 DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG----GVVVD 115 (525)
T ss_pred CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC----eEEEE
Confidence 445555543 2488878889999999999999999999997 67999999999999999887765 89999
Q ss_pred eccCcc------E-EEeCCCCEEEEeCCCcHHHHHHHHHHhCCCCee-cCCCCCCccccccCcCCCCCCCccccCchhhh
Q 009115 132 MINLSS------I-SIDVENKTAWVQVGATLGQLYYRIAEKSPNLAF-PAGSCPSVGTGGHISGGGWGILLRKYGLAADN 203 (543)
Q Consensus 132 l~~~~~------i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~-~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~ 203 (543)
|++||+ + ++|.+..+|+|++|++|.+|.+++.++| +.. ..+....+++||.+++||+|..+.+||..+|+
T Consensus 116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~ 193 (525)
T PLN02441 116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISN 193 (525)
T ss_pred CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHh
Confidence 999999 4 8889999999999999999999999986 433 23555678999999999999999999999999
Q ss_pred eeeEEEEeeCCcEee-ccCCCccchhheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHHHHH
Q 009115 204 IVDARMIDVQGRFLD-RKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRW 275 (543)
Q Consensus 204 v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (543)
|+++|||+++|++++ ++.+|+|||||++|| +|+|||||+++||++|+|+.+..+.+.|...+.+.+.++.+
T Consensus 194 Vl~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~l 265 (525)
T PLN02441 194 VLELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERL 265 (525)
T ss_pred EEEEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHH
Confidence 999999999999999 888899999999999 58999999999999999997767677776544444334333
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.7e-33 Score=297.93 Aligned_cols=196 Identities=22% Similarity=0.337 Sum_probs=171.4
Q ss_pred CCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEE
Q 009115 71 FSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWV 149 (543)
Q Consensus 71 ~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v 149 (543)
|++.....|.+|+.|+|++||+++|++|++++++|+++|+|||+.+.... + +++|||++||+| ++|.++++|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~----gvvIdl~~l~~i~~id~~~~~vtV 81 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D----GFLIHLDKMNKVLQFDKEKKQITV 81 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C----eEEEEhhhcCCceEEcCCCCEEEE
Confidence 88888899999999999999999999999999999999999999876543 3 799999999998 99999999999
Q ss_pred eCCCcHHHHHHHHHHhCCCCeec-CCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-ccCCCccch
Q 009115 150 QVGATLGQLYYRIAEKSPNLAFP-AGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMGEDLF 227 (543)
Q Consensus 150 ~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~ 227 (543)
+||+++.+|.+.|.++| +.++ .|.++.++|||++++|+||. +.+||..+|+|+++++|++||++++ ++.+++|||
T Consensus 82 ~aG~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf 158 (438)
T TIGR01678 82 EAGIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVF 158 (438)
T ss_pred cCCCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHH
Confidence 99999999999999997 4454 67888899999999999996 6889999999999999999999999 778899999
Q ss_pred hheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHHHHHHHhhh
Q 009115 228 WAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAH 280 (543)
Q Consensus 228 ~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (543)
|+.+|| .|+|||||++|||++|........ .. ....++++.|++...
T Consensus 159 ~a~~~~-~G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 159 QAARVS-LGCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHWK 205 (438)
T ss_pred HHHhcC-CCceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHhh
Confidence 999999 589999999999999987644322 11 123456666766543
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.7e-32 Score=290.03 Aligned_cols=174 Identities=22% Similarity=0.356 Sum_probs=156.0
Q ss_pred CCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEE
Q 009115 71 FSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWV 149 (543)
Q Consensus 71 ~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v 149 (543)
|+......|.+|++|+|++||+++|+.|++ +|+++|+|||+.+.+.. + +++|||++||+| ++|+++++|+|
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~----g~~idl~~l~~i~~~d~~~~~v~v 75 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D----GTMISLTGLQGVVDVDQPTGLATV 75 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C----CEEEEhhHcCCceeecCCCCEEEE
Confidence 888888999999999999999999999974 79999999999876542 3 799999999998 99999999999
Q ss_pred eCCCcHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-ccCCCccchh
Q 009115 150 QVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMGEDLFW 228 (543)
Q Consensus 150 ~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~ 228 (543)
|||+++.+|.+.|.++|..+.. .|.+..++|||.+++|+||.. ..||..+|+|++++||++||++++ ++.+|+||||
T Consensus 76 ~aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~ 153 (419)
T TIGR01679 76 EAGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYL 153 (419)
T ss_pred cCCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHH
Confidence 9999999999999999854432 345566889999999999974 689999999999999999999999 7888999999
Q ss_pred heeccCCCCeEEEEEEEEEEEecCCeE
Q 009115 229 AIRGGGGASFGVIVAWKIKLVDVPSTV 255 (543)
Q Consensus 229 a~rG~g~g~~Givt~~~lk~~p~~~~~ 255 (543)
|+||| .|+|||||++|||++|.++..
T Consensus 154 a~~g~-~G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 154 AARVS-LGALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHHhC-CCceEEEEEEEEEeecceEeE
Confidence 99999 589999999999999998644
No 4
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=2.4e-32 Score=294.84 Aligned_cols=181 Identities=18% Similarity=0.231 Sum_probs=159.8
Q ss_pred CCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEee-CCCCCCCCCcccCCCCCeEEEEeccCcc-EEEeCCCCEEE
Q 009115 71 FSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRS-GGHDYEGLSFRTSYNSPFVIIDMINLSS-ISIDVENKTAW 148 (543)
Q Consensus 71 ~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~g-gGh~~~g~~~~~~~~~~givIdl~~~~~-i~~d~~~~~v~ 148 (543)
|+++....|.+|++|+|++||+++|++|+++++||+++| +||++.+.....+ .+++++|||++||+ +++|.++++|+
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~-~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDG-SDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCC-CCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 999999999999999999999999999999999999996 5999876554321 01379999999999 59999999999
Q ss_pred EeCCCcHHHHHHHHHHhCCCCeecCC-CCCCccccccCcCCCCCCCc-cccCchhhheeeEEEEeeCC------cEee-c
Q 009115 149 VQVGATLGQLYYRIAEKSPNLAFPAG-SCPSVGTGGHISGGGWGILL-RKYGLAADNIVDARMIDVQG------RFLD-R 219 (543)
Q Consensus 149 v~~G~~~~~l~~~l~~~g~~l~~~~g-~~~~vgigG~~~ggg~G~~~-~~~G~~~d~v~~~~vV~~~G------~~~~-~ 219 (543)
|+||+++.+|.+.|.++| +.++.+ ....++|||.+++|+||... +.||..+|+|++++||++|| ++++ +
T Consensus 103 V~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred ECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 999999999999999996 555543 45678999999999999866 58899999999999999998 7888 7
Q ss_pred cCCCccchhheeccCCCCeEEEEEEEEEEEecCCeE
Q 009115 220 KSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTV 255 (543)
Q Consensus 220 ~~~~~dl~~a~rG~g~g~~Givt~~~lk~~p~~~~~ 255 (543)
..+++|||||+||| +|+|||||++|||++|.+...
T Consensus 181 ~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 181 EGDTPNEFNAAKVS-LGVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCCHHHHHhhccC-CCccEeeeEEEEEEEccccce
Confidence 77899999999999 589999999999999988743
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.4e-32 Score=296.20 Aligned_cols=187 Identities=27% Similarity=0.392 Sum_probs=166.6
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGA 153 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~ 153 (543)
....|.+|+.|+|++||+++|++|.++++||++||+|||+.|.+...+ +++|||++||+| ++|+++++|+|+||+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~----gvvl~l~~mn~i~~id~~~~~~~v~aGv 103 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG----GVVLDLSRLNRILEIDPEDGTATVQAGV 103 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC----cEEEEchhhcchhccCcCCCEEEEcCCc
Confidence 456899999999999999999999999999999999999998877653 799999999999 899999999999999
Q ss_pred cHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-c-----cCCCccch
Q 009115 154 TLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-R-----KSMGEDLF 227 (543)
Q Consensus 154 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~-----~~~~~dl~ 227 (543)
++.+|.++|.++|+.+.+.+++..+++|||++++|++|..+.+||.+.|+|+++++|++||++++ . ...+.||+
T Consensus 104 ~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 104 TLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred cHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 99999999999976554444555589999999999999999999999999999999999999998 2 24568999
Q ss_pred hheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchH
Q 009115 228 WAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQ 266 (543)
Q Consensus 228 ~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~ 266 (543)
++..|| .|+|||||++++|++|.|+........+...+
T Consensus 184 ~l~iGs-~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~ 221 (459)
T COG0277 184 ALFVGS-EGTLGIITEATLKLLPLPETKATAVAGFPSIE 221 (459)
T ss_pred HhcccC-CccceEEEEEEEEeccCCchheEEEEeCCCHH
Confidence 999998 68999999999999999987666666665544
No 6
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.8e-33 Score=302.65 Aligned_cols=193 Identities=23% Similarity=0.328 Sum_probs=172.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcH
Q 009115 77 PKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATL 155 (543)
Q Consensus 77 ~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~ 155 (543)
..|.+|++|+|++||+++|++|+++++||+++|||||+.|.+.... ++++|||++||+| ++|.++++|+||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~---ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH---GGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC---CEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 4799999999999999999999999999999999999998876543 4899999999998 89999999999999999
Q ss_pred HHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee--cc----CCCccchhh
Q 009115 156 GQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD--RK----SMGEDLFWA 229 (543)
Q Consensus 156 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~--~~----~~~~dl~~a 229 (543)
.+|.++|.++| +.++...++.++|||.++++++|..+.+||.++|+|+++|||++||++++ +. ..++||+|+
T Consensus 209 ~~L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 99999999986 56777767788999999999999999999999999999999999999996 22 246899999
Q ss_pred eeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHHHHH
Q 009115 230 IRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRW 275 (543)
Q Consensus 230 ~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (543)
++|| +|+|||||+++||++|.|+......+.|+..+++.+++...
T Consensus 287 ~~Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 287 VIGS-EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred hccC-CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHH
Confidence 9999 68999999999999999998777788887655565555443
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.3e-32 Score=290.90 Aligned_cols=196 Identities=17% Similarity=0.269 Sum_probs=170.9
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEE
Q 009115 70 RFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAW 148 (543)
Q Consensus 70 r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~ 148 (543)
+|+++....|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+...+ .+|||++||+| +||.++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~g-----~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSRA-----GMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCCC-----eEEEhhhCCCCEEEcCCCCEEE
Confidence 39999999999999999999999999999999999999999999998777644 47999999997 9999999999
Q ss_pred EeCCCcHHHHHHHHHHhCCCCeec-CCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-ccCCCccc
Q 009115 149 VQVGATLGQLYYRIAEKSPNLAFP-AGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMGEDL 226 (543)
Q Consensus 149 v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl 226 (543)
|+||+++.+|.+.|.++| +.++ .|.+..++|||++++|+||.. .+||..+|+|++++||+++|++++ ++.+++||
T Consensus 128 V~AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdL 204 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPEL 204 (541)
T ss_pred EcCCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHH
Confidence 999999999999999997 4444 478888999999999999985 479999999999999999999999 77889999
Q ss_pred hhheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHHHHHHHhh
Q 009115 227 FWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVA 279 (543)
Q Consensus 227 ~~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (543)
|||+||| .|+|||||++|||++|.+.... .....+ ..++++.+.++.
T Consensus 205 F~Aargs-lG~LGVItevTLr~~Pa~~l~~-~~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 205 FFLARCG-LGGLGVVAEVTLQCVERQELVE-HTFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHHHhcC-CCceEeEEEEEEEEEeccceeE-EEEecC----HHHHHHHHHHHH
Confidence 9999999 5899999999999999997533 222223 334555555543
No 8
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=3.8e-32 Score=292.42 Aligned_cols=197 Identities=21% Similarity=0.299 Sum_probs=171.1
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGA 153 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~ 153 (543)
....|.+|++|+|++||+++|++|+++++||++||+||++.|.+.... ++++|||++||+| ++|+++++|+||||+
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~---~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE---KGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC---CcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 456899999999999999999999999999999999999987666543 3899999999998 999999999999999
Q ss_pred cHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-cc----CCCccchh
Q 009115 154 TLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RK----SMGEDLFW 228 (543)
Q Consensus 154 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~----~~~~dl~~ 228 (543)
++.+|.++|.++|..+...+++...++|||.+++++.|..+.+||...|+|+++|||++||++++ .. ..++||+|
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 99999999999975333334555678999999999999999999999999999999999999998 32 34899999
Q ss_pred heeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHHHHH
Q 009115 229 AIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRW 275 (543)
Q Consensus 229 a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (543)
+++|+ +|+|||||+++||++|.|+....+.+.|+..+++.+++..+
T Consensus 209 l~~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 209 LFTGS-EGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred hhccC-CCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 99999 68999999999999999998777777787655555554443
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.4e-30 Score=275.67 Aligned_cols=190 Identities=22% Similarity=0.255 Sum_probs=164.6
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHHHHH
Q 009115 82 IITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQLYY 160 (543)
Q Consensus 82 vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 160 (543)
||+|+|+|||+++|++|+++++||+++|+|||+.|.+...+ ++++|||++||+| ++|+++++++||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~---~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE---GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC---CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 67899999999999999999999999999999887666543 4899999999998 9999999999999999999999
Q ss_pred HHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-c-----cCCCccchhheeccC
Q 009115 161 RIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-R-----KSMGEDLFWAIRGGG 234 (543)
Q Consensus 161 ~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~-----~~~~~dl~~a~rG~g 234 (543)
+|.++|..+.+.+++....+|||.+++++.|..+.+||.+.|+|++++||++||++++ . ...++||++.+.|+
T Consensus 78 ~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs- 156 (413)
T TIGR00387 78 AVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS- 156 (413)
T ss_pred HHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC-
Confidence 9999974333334555568899999999999999999999999999999999999997 2 33478999999999
Q ss_pred CCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHHHHH
Q 009115 235 GASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRW 275 (543)
Q Consensus 235 ~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (543)
+|+|||||+++||++|.|+....+.+.|+..+++.+++..+
T Consensus 157 ~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 157 EGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 68999999999999999997777777777655555555444
No 10
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=1.1e-29 Score=255.17 Aligned_cols=178 Identities=24% Similarity=0.392 Sum_probs=154.6
Q ss_pred CCCCCCCCceEEEEcCCHHHHHHHHHHHHHc--CCeEEEeeCCCCCCCCCcccCCCCCeEEEEec---cCccE-EEeCCC
Q 009115 71 FSTPATPKPLVIITPIHVSHIQAAIKCSQKY--GMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMI---NLSSI-SIDVEN 144 (543)
Q Consensus 71 ~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~--~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~---~~~~i-~~d~~~ 144 (543)
|....+..|.+|+.|+|+|||++++|.|... ++||++||+|||..|++.... +|++|.|+ .|+++ .+..++
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~---~GvvV~m~~~~~~~~~~~~~~~~ 132 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR---GGVVVCMDSSLLMKDVPVLVVDD 132 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC---CCeEEEEehhhccCCCceeeccc
Confidence 4444567999999999999999999999999 899999999999999988733 48777665 45666 667777
Q ss_pred CEEEEeCCCcHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-ccCCC
Q 009115 145 KTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMG 223 (543)
Q Consensus 145 ~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~ 223 (543)
..|.|.||..|-+|.+++.++|..-.++....+ .+|||.++.+|+|..+.+||...+||++++||+++|++++ ++..|
T Consensus 133 ~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n 211 (505)
T KOG1231|consen 133 LYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRAN 211 (505)
T ss_pred ceEEeeCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccC
Confidence 999999999999999999999731122222223 8899999999999999999999999999999999999999 88899
Q ss_pred ccchhheeccCCCCeEEEEEEEEEEEecCC
Q 009115 224 EDLFWAIRGGGGASFGVIVAWKIKLVDVPS 253 (543)
Q Consensus 224 ~dl~~a~rG~g~g~~Givt~~~lk~~p~~~ 253 (543)
++||+++.|| .|+|||||+++++|+|+|.
T Consensus 212 ~~lf~~vlGg-lGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 212 SNLFFLVLGG-LGQFGIITRARIKLEPAPK 240 (505)
T ss_pred ceeeeeeecc-CcceeeEEEEEEEeccCCc
Confidence 9999999999 7999999999999999994
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=5.8e-30 Score=262.01 Aligned_cols=170 Identities=21% Similarity=0.292 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeeCCC-CCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHHHHHHHHH
Q 009115 87 HVSHIQAAIKCSQKYGMQIRVRSGGH-DYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQLYYRIAE 164 (543)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~v~~~ggGh-~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~ 164 (543)
.++||+++|++|+++++||+++|||| ++.|.+ .. +++|||++||+| ++|+++.+|+|++|+++.+|.+.|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~----~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA----GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC----CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999999999997 455653 23 579999999998 99999999999999999999999999
Q ss_pred hCCCCeecCC-CCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-c-----cCCCccchhheeccCCCC
Q 009115 165 KSPNLAFPAG-SCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-R-----KSMGEDLFWAIRGGGGAS 237 (543)
Q Consensus 165 ~g~~l~~~~g-~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~-----~~~~~dl~~a~rG~g~g~ 237 (543)
+|..+.+.++ .+...+|||.+++|++|..+.+||..+|+|+++++|++||++++ . +..++||||+++|| .|+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs-~Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS-LGT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC-Cch
Confidence 9865555343 44468999999999999999999999999999999999999998 2 23578999999999 589
Q ss_pred eEEEEEEEEEEEecCCeEEEEEEEcC
Q 009115 238 FGVIVAWKIKLVDVPSTVTVFTVRRP 263 (543)
Q Consensus 238 ~Givt~~~lk~~p~~~~~~~~~~~~~ 263 (543)
|||||+++||++|.|+....+.+.++
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC
Confidence 99999999999999986555555544
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.8e-28 Score=263.26 Aligned_cols=177 Identities=19% Similarity=0.285 Sum_probs=160.2
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEE
Q 009115 70 RFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAW 148 (543)
Q Consensus 70 r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~ 148 (543)
+|++.....|.+++.|+|++||+++|++|++++++|+++|+|||+.+.....+ .+|||++||+| ++|.++++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~-----glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE-----GMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC-----EEEECcCCCCcEEEeCCCCEEE
Confidence 49999999999999999999999999999999999999999999988776544 46899999997 9999999999
Q ss_pred EeCCCcHHHHHHHHHHhCCCCeec-CCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-ccCCCccc
Q 009115 149 VQVGATLGQLYYRIAEKSPNLAFP-AGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMGEDL 226 (543)
Q Consensus 149 v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl 226 (543)
|++|+++.+|.+.|.++|. .++ .|.....+|||.+++|+||... .+|..+|+|++++||+++|++++ +..+++||
T Consensus 163 V~AG~~l~~L~~~L~~~GL--al~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdL 239 (573)
T PLN02465 163 VQAGARVQQVVEALRPHGL--TLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPEL 239 (573)
T ss_pred EccCCCHHHHHHHHHHcCC--EeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHH
Confidence 9999999999999999974 444 3556678999999999999854 68999999999999999999998 77788999
Q ss_pred hhheeccCCCCeEEEEEEEEEEEecCCeE
Q 009115 227 FWAIRGGGGASFGVIVAWKIKLVDVPSTV 255 (543)
Q Consensus 227 ~~a~rG~g~g~~Givt~~~lk~~p~~~~~ 255 (543)
||+.|+| .|.|||||+++||+.|.++..
T Consensus 240 F~aar~g-lG~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 240 FRLARCG-LGGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhHhhcc-CCCCcEEEEEEEEEEecCceE
Confidence 9999999 589999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=4.4e-27 Score=211.94 Aligned_cols=136 Identities=36% Similarity=0.579 Sum_probs=124.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCcc-EEEeCCCCEEEEeCCCcHHH
Q 009115 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSS-ISIDVENKTAWVQVGATLGQ 157 (543)
Q Consensus 79 p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~-i~~d~~~~~v~v~~G~~~~~ 157 (543)
|.+|++|++++||+++|++|+++++++.++|+||++.+.+...+ +++|||++||+ +++|++.++++|++|+++.+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~~----~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDEG----GIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSSTT----EEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccCC----cEEEeeccccccccccccceeEEEeccccchh
Confidence 88999999999999999999999999999999999997776444 89999999999 59999999999999999999
Q ss_pred HHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee
Q 009115 158 LYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD 218 (543)
Q Consensus 158 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~ 218 (543)
|+++|.++|..+.+.++.+..+++||++++|++|..++.||..+|+|+++|+|++||++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9999999974443447888889999999999999999999999999999999999999986
No 14
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=2.2e-24 Score=226.42 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=166.1
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCC--CCCeEEEEeccCccE-EEeCCCCEEEEeCC
Q 009115 76 TPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSY--NSPFVIIDMINLSSI-SIDVENKTAWVQVG 152 (543)
Q Consensus 76 ~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~--~~~givIdl~~~~~i-~~d~~~~~v~v~~G 152 (543)
...|.+||+|+|++||+++|++|.++++||++||||+++.|.+.+.+. ..++|+|||++||+| +|| +...++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999998887541 124899999999999 888 5678999999
Q ss_pred CcHHHHHHHHHHhCCCCeecCCC-CCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcE-------ee--c---
Q 009115 153 ATLGQLYYRIAEKSPNLAFPAGS-CPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRF-------LD--R--- 219 (543)
Q Consensus 153 ~~~~~l~~~l~~~g~~l~~~~g~-~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~-------~~--~--- 219 (543)
+++.+|.++|.++|.......|+ |-.++|||.++.++-|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999997432221223 2345788999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------cchhhe--eccCCCCeEEEEEEEEEEEecCCeEEE
Q 009115 220 ------KSMGE----------------------------------DLFWAI--RGGGGASFGVIVAWKIKLVDVPSTVTV 257 (543)
Q Consensus 220 ------~~~~~----------------------------------dl~~a~--rG~g~g~~Givt~~~lk~~p~~~~~~~ 257 (543)
+..+. |+...+ .|+ .|++||| +++|+++|+|+....
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceE
Confidence 11233 777777 888 7999999 999999999999889
Q ss_pred EEEEcCchHHHHHHHHHHHHhhhcCC
Q 009115 258 FTVRRPWDQIATKLVHRWQHVAHKLP 283 (543)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p 283 (543)
|.+.++..+.+.++...+..-...+|
T Consensus 272 f~ig~n~~~~~~~~rr~il~~~~~lP 297 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHILANFKNLP 297 (564)
T ss_pred EEEeCCCHHHHHHHHHHHHHhCCCCc
Confidence 99999877766666655544333444
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=6.3e-24 Score=214.92 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=135.3
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEecc-CccEEEeCCCCEEEEeCCC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMIN-LSSISIDVENKTAWVQVGA 153 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~-~~~i~~d~~~~~v~v~~G~ 153 (543)
....|.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|||++ |+.|++ ++.+|+|+||+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~----gvvI~l~~~l~~i~~--~~~~v~v~aG~ 100 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR----GVVIRLGKGLNEIEV--EGNRITAGAGA 100 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc----eEEEEecCCcceEEe--cCCEEEEECCC
Confidence 446899999999999999999999999999999999999765444334 89999998 998855 45789999999
Q ss_pred cHHHHHHHHHHhCC-CCeecCCCCCCccccccCcCCCCCCCccccC-chhhheeeEEEEeeCCcEeeccCCCccchhhee
Q 009115 154 TLGQLYYRIAEKSP-NLAFPAGSCPSVGTGGHISGGGWGILLRKYG-LAADNIVDARMIDVQGRFLDRKSMGEDLFWAIR 231 (543)
Q Consensus 154 ~~~~l~~~l~~~g~-~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G-~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~r 231 (543)
.+.+|.+++.++|+ ++++..|.+.+ .||+.+++++.|| .++|+|+++++|++||++++.. +.|++|++|
T Consensus 101 ~~~~L~~~l~~~Gl~gle~~~gipGT-------VGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR 171 (298)
T PRK13905 101 PLIKLARFAAEAGLSGLEFAAGIPGT-------VGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYR 171 (298)
T ss_pred cHHHHHHHHHHcCCCcchhccCCCcc-------hhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCc
Confidence 99999999999984 44455555443 3566666667777 7999999999999999999821 359999999
Q ss_pred ccCCC-CeEEEEEEEEEEEecC
Q 009115 232 GGGGA-SFGVIVAWKIKLVDVP 252 (543)
Q Consensus 232 G~g~g-~~Givt~~~lk~~p~~ 252 (543)
+++.+ .+||||+++||++|..
T Consensus 172 ~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 172 HSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred cccCCCCCEEEEEEEEEEcCCC
Confidence 98654 3899999999999974
No 16
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.89 E-value=2e-22 Score=198.48 Aligned_cols=201 Identities=20% Similarity=0.221 Sum_probs=169.8
Q ss_pred CCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCC-CCCeEEEEeccCccE-EEeCCCCEEE
Q 009115 71 FSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSY-NSPFVIIDMINLSSI-SIDVENKTAW 148 (543)
Q Consensus 71 ~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~-~~~givIdl~~~~~i-~~d~~~~~v~ 148 (543)
|.+...+.|+.||.|++.+||.++|+.|.+|++-+.+.|||+|..+.-....+ +...+.+|++.||+| -+|.+..|++
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 67778899999999999999999999999999999999999997754333322 234566888999998 9999999999
Q ss_pred EeCCCcHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-----ccCCC
Q 009115 149 VQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-----RKSMG 223 (543)
Q Consensus 149 v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-----~~~~~ 223 (543)
+++|+.-.+|.++|.+.|..-..-+.+..-.++||+++..+.|+--..||.+-|.|+.+++|+|.|.+.+ .-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999873221122233335799999999999999999999999999999999999886 24578
Q ss_pred ccchhheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHH
Q 009115 224 EDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLV 272 (543)
Q Consensus 224 ~dl~~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~ 272 (543)
||+...+.|+ .|++||||++++|++|+|+......+.|+..+.-...+
T Consensus 313 PDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~ 360 (613)
T KOG1233|consen 313 PDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFF 360 (613)
T ss_pred CCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHH
Confidence 9999999999 79999999999999999998888888888655444443
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.88 E-value=8.9e-23 Score=200.67 Aligned_cols=192 Identities=19% Similarity=0.257 Sum_probs=174.7
Q ss_pred ccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCC
Q 009115 67 QNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENK 145 (543)
Q Consensus 67 ~n~r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~ 145 (543)
+|.-|.......-..|++|.|+++|++++++|+++++.|+++||-++..|.|.+.- +-+||+|.+||+| ++|+-.+
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf---DEiVlsl~~mNKi~sfDevsG 154 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF---DEIVLSLGLMNKILSFDEVSG 154 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch---HHHhhhhhhhccccccccccc
Confidence 56678888888999999999999999999999999999999999999998888875 4799999999999 9999999
Q ss_pred EEEEeCCCcHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee------c
Q 009115 146 TAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD------R 219 (543)
Q Consensus 146 ~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~------~ 219 (543)
++.+++|+.+.++...|.++|+.+++..|.-+++-|||.+++++-|..--+||....+|+++|+|+|+|+++. .
T Consensus 155 il~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRK 234 (511)
T KOG1232|consen 155 ILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRK 234 (511)
T ss_pred eEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcc
Confidence 9999999999999999999987777778999999999999999999999999999999999999999999996 3
Q ss_pred cCCCccchhheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEc
Q 009115 220 KSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR 262 (543)
Q Consensus 220 ~~~~~dl~~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~ 262 (543)
..++.|+-....|+ +|++||||++++-+.|.|+.+....+..
T Consensus 235 DNTgydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn~af~gi 276 (511)
T KOG1232|consen 235 DNTGYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVNVAFIGI 276 (511)
T ss_pred cCccccchhheecC-CceeeEEeeEEEeecCCCcceeEEEEcc
Confidence 45688999999999 8999999999999999998655444433
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=3e-21 Score=195.12 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=133.9
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCc
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGAT 154 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~ 154 (543)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ +++|+|++|++|+++ ..+++|++|+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~----GvvI~l~~l~~i~~~--~~~v~v~aG~~ 106 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR----GITVSLIHITGVTVT--GTTIVAQCGAA 106 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee----EEEEEeCCcCcEEEe--CCEEEEEeCCc
Confidence 456799999999999999999999999999999999999875444444 899999999998776 45899999999
Q ss_pred HHHHHHHHHHhCC-CCeecCCCCCCccccccCcCCCCCCCccccC-chhhheeeEEEEeeCCcEee-ccCCCccchhhee
Q 009115 155 LGQLYYRIAEKSP-NLAFPAGSCPSVGTGGHISGGGWGILLRKYG-LAADNIVDARMIDVQGRFLD-RKSMGEDLFWAIR 231 (543)
Q Consensus 155 ~~~l~~~l~~~g~-~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G-~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~r 231 (543)
+.+|.+++.++|. ++.++.|.+++| ||+..++++.|| ...|.+.+++|+++||++++ ++ .|+.|+||
T Consensus 107 ~~~L~~~~~~~gl~Gle~~~giPGtV-------GGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~---~e~~f~YR 176 (305)
T PRK12436 107 IIDVSRIALDHNLTGLEFACGIPGSV-------GGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK---EAFEFGYR 176 (305)
T ss_pred HHHHHHHHHHcCCccchhhcCCccch-------hHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH---HHhcCcCC
Confidence 9999999999984 666777777765 355555555677 56788889999999999998 44 48999999
Q ss_pred ccCCC-CeEEEEEEEEEEEec
Q 009115 232 GGGGA-SFGVIVAWKIKLVDV 251 (543)
Q Consensus 232 G~g~g-~~Givt~~~lk~~p~ 251 (543)
.+... ...||++++||+.+.
T Consensus 177 ~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 177 KSVFANNHYIILEARFELEEG 197 (305)
T ss_pred CCcCCCCCEEEEEEEEEEcCC
Confidence 87432 246999999999875
No 19
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.86 E-value=4.7e-21 Score=193.24 Aligned_cols=182 Identities=24% Similarity=0.280 Sum_probs=157.5
Q ss_pred CCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEE
Q 009115 71 FSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWV 149 (543)
Q Consensus 71 ~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v 149 (543)
|..+..++.+-|-+|+|++|+.++|+.|.++|.++++.|.|||..+..+.+ |.+|+|.+||++ ++|++.++|||
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd-----g~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD-----GLLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc-----ccEEEhhhhccceeeCchhceEEe
Confidence 555555678889999999999999999999999999999999998877654 589999999998 99999999999
Q ss_pred eCCCcHHHHHHHHHHhCCCCeec-CCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-ccCCCccch
Q 009115 150 QVGATLGQLYYRIAEKSPNLAFP-AGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMGEDLF 227 (543)
Q Consensus 150 ~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~ 227 (543)
++|+++.||.+.+.+.|+ .++ .+.-..++|||.+..|.||.....|+..........++.++|.++. +++..||+|
T Consensus 117 ~aGirlrQLie~~~~~Gl--sL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F 194 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKLGL--SLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELF 194 (518)
T ss_pred ccCcCHHHHHHHHHhcCc--cccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHH
Confidence 999999999999999874 444 4566678899999999999877766766666666777778999887 888899999
Q ss_pred hheeccCCCCeEEEEEEEEEEEecCCeEEEEEE
Q 009115 228 WAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTV 260 (543)
Q Consensus 228 ~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~ 260 (543)
.|.+-| -|-+|||.++||++.|+.+....+.+
T Consensus 195 ~AAkvS-LG~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 195 NAAKVS-LGVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhhhc-ccceeEEEEEEEEEEecceeeeEEEE
Confidence 999999 58999999999999999886555544
No 20
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=1.8e-20 Score=192.18 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=140.9
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCc
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGAT 154 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~ 154 (543)
....+.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ ++||+++ ++.++++.+..+|+|++|+.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~----GvVI~l~-~~~i~i~~~~~~v~vgAG~~ 103 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD----GTVVRVA-TRGVTVDCGGGLVRAEAGAV 103 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc----EEEEEeC-CCcEEEeCCCCEEEEEcCCC
Confidence 456799999999999999999999999999999999999875554444 8999997 58888876677999999999
Q ss_pred HHHHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeC-CcEee-ccCCCccchhhee
Q 009115 155 LGQLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQ-GRFLD-RKSMGEDLFWAIR 231 (543)
Q Consensus 155 ~~~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~-G~~~~-~~~~~~dl~~a~r 231 (543)
|.+|.+++.++| .|+++..|.+++||.+..+..|++| +.+.|.|.++++++.+ |++++ + +.|++|+||
T Consensus 104 ~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG------~ei~D~l~sV~vvd~~~G~~~~~~---~~el~f~YR 174 (363)
T PRK13903 104 WDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYG------QEVSDTITRVRLLDRRTGEVRWVP---AADLGFGYR 174 (363)
T ss_pred HHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhH------HHHhhhEeEEEEEECCCCEEEEEE---HHHcceecc
Confidence 999999999999 5788899999998777777777766 3678999999999965 99998 4 469999999
Q ss_pred ccCC--CCeEEEEEEEEEEEecC
Q 009115 232 GGGG--ASFGVIVAWKIKLVDVP 252 (543)
Q Consensus 232 G~g~--g~~Givt~~~lk~~p~~ 252 (543)
++.. ++++|||+++||++|..
T Consensus 175 ~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 175 TSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred ccccCCCCCEEEEEEEEEEEcCC
Confidence 9632 24789999999999874
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.5e-20 Score=189.71 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=132.4
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEecc-CccEEEeCCCCEEEEeCCC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMIN-LSSISIDVENKTAWVQVGA 153 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~-~~~i~~d~~~~~v~v~~G~ 153 (543)
....|.+++.|+|++||++++++|+++++|+.++|||||......+.+ +++|+|++ ++.++++ +.+++|+||+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~----gvVI~l~~~~~~i~~~--~~~v~v~AG~ 105 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR----GVVLRLPQDFPGESTD--GGRLVLGAGA 105 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe----eEEEEecCCcceEEec--CCEEEEECCC
Confidence 456899999999999999999999999999999999999864443333 89999977 5556543 4699999999
Q ss_pred cHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCcc-ccCchhhheeeEEEEeeCCcEeeccCCCccchhheec
Q 009115 154 TLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLR-KYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRG 232 (543)
Q Consensus 154 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~-~~G~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG 232 (543)
.+.+|.+++.++| | .|....+||.| +.||+..++++ ++|.++|+|+++++|+++| +.+- ...|+.|+||+
T Consensus 106 ~~~~L~~~~~~~G--L---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~--~~~e~~f~YR~ 176 (302)
T PRK14652 106 PISRLPARAHAHG--L---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFV--PAAALGYAYRT 176 (302)
T ss_pred cHHHHHHHHHHcC--C---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEe--ehhhcCcccce
Confidence 9999999999997 3 25666666766 55777777775 6678999999999999999 4441 13599999999
Q ss_pred cCCCCeEEEEEEEEEEEecC
Q 009115 233 GGGASFGVIVAWKIKLVDVP 252 (543)
Q Consensus 233 ~g~g~~Givt~~~lk~~p~~ 252 (543)
+..+..||||+++||++|..
T Consensus 177 s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 177 CRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred eccCCCeEEEEEEEEEecCC
Confidence 75333489999999999954
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.84 E-value=1.1e-20 Score=189.55 Aligned_cols=162 Identities=17% Similarity=0.144 Sum_probs=138.3
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCc
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGAT 154 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~ 154 (543)
....|.++++|+|++||++++++|+++++|+.++|||||+...+...+ +++|++++|+++.+++ +.+++|+||+.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~----gvvi~l~~~~~~~~~~-~~~v~v~aG~~ 83 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG----GVIINLGKGIDIEDDE-GEYVHVGGGEN 83 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC----eEEEECCCCceEEEec-CCEEEEEcCCc
Confidence 456799999999999999999999999999999999999887766555 8999999999887666 57999999999
Q ss_pred HHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhh-heeeEEEEeeCCcEee-ccCCCccchhheec
Q 009115 155 LGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAAD-NIVDARMIDVQGRFLD-RKSMGEDLFWAIRG 232 (543)
Q Consensus 155 ~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d-~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG 232 (543)
+.+|.+++.++|+ .|.+..+|+.| ..||+.+++++.||...+ .|++++||++||++++ +. .|+.|+||.
T Consensus 84 ~~~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~---~~~~f~YR~ 154 (284)
T TIGR00179 84 WHKLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN---EQLGFGYRT 154 (284)
T ss_pred HHHHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH---HHccccCCc
Confidence 9999999999973 36667777777 469999999999999876 6799999999999998 43 599999998
Q ss_pred cCCCC-e-EEEEEEEEEEEe
Q 009115 233 GGGAS-F-GVIVAWKIKLVD 250 (543)
Q Consensus 233 ~g~g~-~-Givt~~~lk~~p 250 (543)
+..-. . .||+++++++.+
T Consensus 155 S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 155 SIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred cccCCCCcEEEEEEEEEecc
Confidence 74322 1 699999999844
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=6.9e-20 Score=185.24 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=133.8
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCcH
Q 009115 76 TPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATL 155 (543)
Q Consensus 76 ~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~~ 155 (543)
...+.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|+|++|++|+++. .+++|+||+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~----GvvI~l~~l~~i~~~~--~~v~v~aG~~~ 107 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR----GIVISLLSLDHIEVSD--DAIIAGSGAAI 107 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc----eEEEEecCccceEEeC--CEEEEECCCcH
Confidence 35789999999999999999999999999999999999875544444 8999999999998764 48999999999
Q ss_pred HHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccC-chhhheeeEEEEeeCCcEee-ccCCCccchhheecc
Q 009115 156 GQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYG-LAADNIVDARMIDVQGRFLD-RKSMGEDLFWAIRGG 233 (543)
Q Consensus 156 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G-~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~ 233 (543)
.+|.+++.++|+ .|....+||.| ..||+..++++.|| .++|+|+++++|+++|++++ ++ .|+.|+||.+
T Consensus 108 ~~l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~---~e~~f~YR~S 178 (307)
T PRK13906 108 IDVSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT---KELELDYRNS 178 (307)
T ss_pred HHHHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH---HHccCcCCcc
Confidence 999999999973 24444456666 45777777777785 88999999999999999998 43 4899999987
Q ss_pred CCCC-eEEEEEEEEEEEec
Q 009115 234 GGAS-FGVIVAWKIKLVDV 251 (543)
Q Consensus 234 g~g~-~Givt~~~lk~~p~ 251 (543)
.... --||++++||+.|.
T Consensus 179 ~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 179 IIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred cCCCCCEEEEEEEEEECCC
Confidence 4322 23999999999873
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=2.5e-18 Score=173.08 Aligned_cols=166 Identities=15% Similarity=0.132 Sum_probs=132.4
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCc-cEEEeCCCCEEEEeCCC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLS-SISIDVENKTAWVQVGA 153 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~-~i~~d~~~~~v~v~~G~ 153 (543)
......+++.|+|++|+++++++++++++|+.++|+|||+...+.+.+ |++|++++++ ++..+.+..+|+|++|+
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~----GvVI~l~~~~~~i~~~~~~~~v~v~AG~ 92 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD----GLVARYRGQRWELHEHGDTAEVWVEAGA 92 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC----eEEEEecCCCcEEEEeCCcEEEEEEcCC
Confidence 445788999999999999999999999999999999999988877766 8999998754 66666655589999999
Q ss_pred cHHHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee-ccCCCccchhheec
Q 009115 154 TLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMGEDLFWAIRG 232 (543)
Q Consensus 154 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG 232 (543)
.|.+|.+++.++|+ .|....+||.|.+.|..++......+.++|.|.++++++.+|++++ +. .|++|+||.
T Consensus 93 ~~~~l~~~~~~~GL-----~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~---~el~f~YR~ 164 (295)
T PRK14649 93 PMAGTARRLAAQGW-----AGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV---HDFAYGYRT 164 (295)
T ss_pred cHHHHHHHHHHcCC-----ccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH---HHcCcccce
Confidence 99999999999973 3444556666633333444444444678999999999999999988 43 499999998
Q ss_pred cCCCCe---------EEEEEEEEEEEecC
Q 009115 233 GGGASF---------GVIVAWKIKLVDVP 252 (543)
Q Consensus 233 ~g~g~~---------Givt~~~lk~~p~~ 252 (543)
+..-.. -||++++|++.|..
T Consensus 165 S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 165 SVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred eecccccccccccCCeEEEEEEEEECCCC
Confidence 743221 28999999998754
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.69 E-value=1.7e-16 Score=159.15 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=132.7
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCc
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGAT 154 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~ 154 (543)
......+++.|+|++|++++++++++ ++|+.+.|+|+|....+.+.+ +++|.+++|+.++++. ..++|+||+.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~----gvVI~l~~~~~i~i~~--~~v~v~AG~~ 102 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD----FVVVSTERLDDIFVDN--DKIICESGLS 102 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc----EEEEEeCCcCceEEeC--CEEEEeCCCc
Confidence 34577889999999999999999999 999999999999988777666 8999998899998863 5899999999
Q ss_pred HHHHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccCc-hhhheeeEEEEeeCCcEee-ccCCCccchhhee
Q 009115 155 LGQLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYGL-AADNIVDARMIDVQGRFLD-RKSMGEDLFWAIR 231 (543)
Q Consensus 155 ~~~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~-~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~r 231 (543)
+.+|..++.++| .|+++..|.+++| ||+.-++++.||. +.|.|.++++++ +|++++ +. .|+-|.||
T Consensus 103 l~~L~~~~~~~GL~GlE~l~gIPGTV-------GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~---~e~~f~YR 171 (297)
T PRK14653 103 LKKLCLVAAKNGLSGFENAYGIPGSV-------GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK---NEIKFSYR 171 (297)
T ss_pred HHHHHHHHHHCCCcchhhhcCCchhH-------HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch---hhccccCc
Confidence 999999999998 4677766666553 5555566666888 899999999999 788777 33 49999999
Q ss_pred ccCCCC--eEEEEEEEEEEEecC
Q 009115 232 GGGGAS--FGVIVAWKIKLVDVP 252 (543)
Q Consensus 232 G~g~g~--~Givt~~~lk~~p~~ 252 (543)
.+.... --|||+++||+.|..
T Consensus 172 ~S~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 172 NSIFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred cccCCCCCcEEEEEEEEEEecCC
Confidence 764322 129999999999864
No 26
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.69 E-value=5.2e-17 Score=160.77 Aligned_cols=170 Identities=23% Similarity=0.242 Sum_probs=143.2
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCC-CCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHHHHHHH
Q 009115 85 PIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSY-NSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQLYYRI 162 (543)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~-~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l 162 (543)
-+.+.+||+.++..+..+-+-.++.+.-+|...|..... +....-|++..|.+| ++|.+++||+|||+|+++++.+.|
T Consensus 60 ~qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~l 139 (543)
T KOG1262|consen 60 QQRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFL 139 (543)
T ss_pred HHHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHh
Confidence 345677888888887787777777788888766665432 223456778866665 999999999999999999999999
Q ss_pred HHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEee--ccCCCccchhheeccCCCCeEE
Q 009115 163 AEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLD--RKSMGEDLFWAIRGGGGASFGV 240 (543)
Q Consensus 163 ~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~--~~~~~~dl~~a~rG~g~g~~Gi 240 (543)
.+.|+.|++. ......++||++.|-|+-..|.+||+..|.+.+.|||++||++++ ..++++|||+|+-++ .|++|.
T Consensus 140 ip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWS-qGTlgf 217 (543)
T KOG1262|consen 140 IPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWS-QGTLGF 217 (543)
T ss_pred ccCCceeeee-cccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccc-cCchhe
Confidence 9998777554 455678999999999999999999999999999999999999998 445899999999999 699999
Q ss_pred EEEEEEEEEecCCeEE
Q 009115 241 IVAWKIKLVDVPSTVT 256 (543)
Q Consensus 241 vt~~~lk~~p~~~~~~ 256 (543)
.+.+++|+.|+.+.+.
T Consensus 218 LVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 218 LVAATIRIIKVKKYVK 233 (543)
T ss_pred eeeeEEEEEeccceEE
Confidence 9999999999998653
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=1.2e-15 Score=150.09 Aligned_cols=164 Identities=22% Similarity=0.237 Sum_probs=139.6
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCC
Q 009115 74 PATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGA 153 (543)
Q Consensus 74 ~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~ 153 (543)
.+......++.|++.+|+.++++.++++++|+.+.|+|+|..-.+.+.+ +++|.+.+++.++++.+...++|++|+
T Consensus 16 riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~----gvvi~~~~~~~~~~~~~~~~i~a~aG~ 91 (291)
T COG0812 16 RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG----GVVIKLGKLNFIEIEGDDGLIEAGAGA 91 (291)
T ss_pred ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc----eEEEEcccccceeeeccCCeEEEccCC
Confidence 3556888999999999999999999999999999999999876666665 899999999999888777799999999
Q ss_pred cHHHHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccCc-hhhheeeEEEEeeCCcEee-ccCCCccchhhe
Q 009115 154 TLGQLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYGL-AADNIVDARMIDVQGRFLD-RKSMGEDLFWAI 230 (543)
Q Consensus 154 ~~~~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~-~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~ 230 (543)
.|.+|.+.+.++| .||++..|.+++| ||+.=++.+.||. +.|.+.++++++.+|++.+ +. .||-|+|
T Consensus 92 ~~~~l~~~~~~~gl~GlE~l~gIPGsv-------Ggav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~---~el~f~Y 161 (291)
T COG0812 92 PWHDLVRFALENGLSGLEFLAGIPGSV-------GGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA---EELGFGY 161 (291)
T ss_pred cHHHHHHHHHHcCCcchhhhcCCCccc-------chhhhccCcccccchheeEEEEEEEcCCCCEEEEEH---HHhCccc
Confidence 9999999999999 5777777777776 4445555555655 6899999999999999998 53 4999999
Q ss_pred eccCCCCe-EEEEEEEEEEEec
Q 009115 231 RGGGGASF-GVIVAWKIKLVDV 251 (543)
Q Consensus 231 rG~g~g~~-Givt~~~lk~~p~ 251 (543)
|-|....- .||++++|++.|-
T Consensus 162 R~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 162 RTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred ccCcCCCCCEEEEEEEEEeCCC
Confidence 98754333 8999999999986
No 28
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.62 E-value=1.6e-16 Score=114.23 Aligned_cols=47 Identities=49% Similarity=0.909 Sum_probs=34.7
Q ss_pred eeccccCCCcCCCCCCCcchhhhhhhhhhhhhhhHHHHHHhhhccCCCCCccCCCCCC
Q 009115 475 AYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIP 532 (543)
Q Consensus 475 ~YvNy~d~dl~~~~~~~~~~~~~~~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~qsI~ 532 (543)
+|+||+|.+++ .+.|.+.|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999998863 137999999999999999999999999999999997
No 29
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=4.7e-15 Score=148.36 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=133.8
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcc-cCCCCCeEEEEeccCccEEEeCCCCEEEEeCCC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFR-TSYNSPFVIIDMINLSSISIDVENKTAWVQVGA 153 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~-~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~ 153 (543)
......+++.|+|++|+++++++++++++|+.+.|+|+|....+.+ .+ +++|.+.+|+.++++. ..++|++|+
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~----g~vi~~~~~~~i~~~~--~~v~a~AG~ 102 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID----FPIIYTGHLNKIEIHD--NQIVAECGT 102 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc----eEEEEECCcCcEEEeC--CEEEEEeCC
Confidence 4457788999999999999999999999999999999998876665 55 7889886799998764 479999999
Q ss_pred cHHHHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccC-chhhheeeEEEEeeCCcEee-ccCCCccchhhe
Q 009115 154 TLGQLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYG-LAADNIVDARMIDVQGRFLD-RKSMGEDLFWAI 230 (543)
Q Consensus 154 ~~~~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G-~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~ 230 (543)
.|.+|..++.++| .|+++..|.+++| ||+.=++.+.|| .+.|.|.++++++.+|++++ +. .|+-|+|
T Consensus 103 ~~~~l~~~~~~~gl~GlE~l~gIPGTV-------GGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~---~e~~f~Y 172 (302)
T PRK14650 103 NFEDLCKFALQNELSGLEFIYGLPGTL-------GGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF---KKEEFKY 172 (302)
T ss_pred cHHHHHHHHHHcCCchhhhhcCCCcch-------hHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH---HHcCccc
Confidence 9999999999998 4677777777766 455555566666 47899999999999999987 43 5999999
Q ss_pred eccCCCC-eEEEEEEEEEEEecCC
Q 009115 231 RGGGGAS-FGVIVAWKIKLVDVPS 253 (543)
Q Consensus 231 rG~g~g~-~Givt~~~lk~~p~~~ 253 (543)
|.+.... =.||++++|++.|..+
T Consensus 173 R~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 173 KISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred ccccCCCCCEEEEEEEEEEcCCCH
Confidence 9874321 1499999999988653
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.61 E-value=5.2e-15 Score=150.25 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=131.0
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEe-CCC--CEEEEeC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISID-VEN--KTAWVQV 151 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d-~~~--~~v~v~~ 151 (543)
+.-....++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.. |++|.+ +|++++++ .+. ..++|++
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~----g~vI~~-~~~~~~~~~~~~~~~~v~a~A 90 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD----GTVLLN-RIKGIEVLSEDDDAWYLHVGA 90 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC----EEEEEe-cCCceEEEecCCCeEEEEEEc
Confidence 44577889999999999999999999999999999999988766 555 888887 49999873 222 3799999
Q ss_pred CCcHHHHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccC-chhhheeeEEEEeeC-CcEee-ccCCCccch
Q 009115 152 GATLGQLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYG-LAADNIVDARMIDVQ-GRFLD-RKSMGEDLF 227 (543)
Q Consensus 152 G~~~~~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G-~~~d~v~~~~vV~~~-G~~~~-~~~~~~dl~ 227 (543)
|+.|.+|.+.+.++| .|+++..|.+++| ||+.-++.+.|| .+.|.|.++++++.+ |++++ +. .|+.
T Consensus 91 G~~~~~l~~~~~~~gl~GlE~l~gIPGTV-------GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~---~e~~ 160 (334)
T PRK00046 91 GENWHDLVLWTLQQGMPGLENLALIPGTV-------GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA---AECR 160 (334)
T ss_pred CCcHHHHHHHHHHcCchhhHHhcCCCcch-------hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH---HHcC
Confidence 999999999999998 4677777777766 445555566666 478999999999987 99887 43 5999
Q ss_pred hheeccCCCC----eEEEEEEEEEEEec
Q 009115 228 WAIRGGGGAS----FGVIVAWKIKLVDV 251 (543)
Q Consensus 228 ~a~rG~g~g~----~Givt~~~lk~~p~ 251 (543)
|+||-+.... --||++++|++.|-
T Consensus 161 f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 161 FGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccccCCCCCcCCEEEEEEEEEecCC
Confidence 9999874332 13999999999885
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=3.5e-14 Score=143.94 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=131.2
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEe---CCCCEEEEeC
Q 009115 75 ATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISID---VENKTAWVQV 151 (543)
Q Consensus 75 ~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d---~~~~~v~v~~ 151 (543)
+......++.|+|.+|+++++++++++++|+.+.|+|+|....+.+.. |+||.+++|+.+++. .+...++|++
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~----G~VI~l~~~~~i~i~~~~~~~~~v~agA 101 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP----GLMLSLRRFRSLHTQTQRDGSVLVHAGA 101 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc----EEEEEeCCcCceEEeeccCCcEEEEEEe
Confidence 445778899999999999999999999999999999999887776666 899999779988752 2324799999
Q ss_pred CCcHHHHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccCc-hhhheeeEEEE-------------------
Q 009115 152 GATLGQLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYGL-AADNIVDARMI------------------- 210 (543)
Q Consensus 152 G~~~~~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~-~~d~v~~~~vV------------------- 210 (543)
|+.|.+|.+++.++| .|+++..|.+++| ||+.=++.+.||. +.|.|.+++++
T Consensus 102 G~~~~~Lv~~~~~~gl~GlE~laGIPGTV-------GGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~ 174 (354)
T PRK14648 102 GLPVAALLAFCAHHALRGLETFAGLPGSV-------GGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNA 174 (354)
T ss_pred CCcHHHHHHHHHHcCCcchhhhcCCCcch-------hhHhhhcCCccceEhhheEEEEEEEeccCccccccccccccccc
Confidence 999999999999998 4677777777766 5555556666764 68999999999
Q ss_pred -eeCCcE-------------eeccCCCccchhheeccCCCC---------eEEEEEEEEEEEecC
Q 009115 211 -DVQGRF-------------LDRKSMGEDLFWAIRGGGGAS---------FGVIVAWKIKLVDVP 252 (543)
Q Consensus 211 -~~~G~~-------------~~~~~~~~dl~~a~rG~g~g~---------~Givt~~~lk~~p~~ 252 (543)
+.+|++ .+ -.+.|+.|+||-+..-. --||++++|++.|..
T Consensus 175 ~~~~g~~~~~~~~~~~~~~~~~--~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 175 QDKRGECLGLDGGPFTCSSFQT--VFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccCCCceecccccccccccceE--ecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 22 12358999999875321 129999999998854
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.40 E-value=4.8e-12 Score=125.02 Aligned_cols=147 Identities=20% Similarity=0.190 Sum_probs=116.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEecc-CccEEEeCCCCEEEEeCCCcHH
Q 009115 78 KPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMIN-LSSISIDVENKTAWVQVGATLG 156 (543)
Q Consensus 78 ~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~-~~~i~~d~~~~~v~v~~G~~~~ 156 (543)
...+++ |+|++|+++++ ++|+.+.|+|+|....+.+.+ +++|.+.+ ++.++++. +|++|+.|.
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~----g~vI~l~~~~~~~~~~~-----~a~AG~~~~ 83 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP----ERVIRLGGEFAEWDLDG-----WVGGGVPLP 83 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc----eEEEEECCcceeEeECC-----EEECCCcHH
Confidence 445566 99999999988 589999999999887776666 89998865 66665532 699999999
Q ss_pred HHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccC-chhhheeeEEEEeeCCcEee-ccCCCccchhheecc
Q 009115 157 QLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYG-LAADNIVDARMIDVQGRFLD-RKSMGEDLFWAIRGG 233 (543)
Q Consensus 157 ~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G-~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~ 233 (543)
+|.+++.++| .|+++..|.+++| ||+.=++.+.|| .+.|.|.++++++ +|++++ +. .|+.|+||.+
T Consensus 84 ~l~~~~~~~gl~GlE~l~gIPGTV-------GGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~---~e~~f~YR~S 152 (273)
T PRK14651 84 GLVRRAARLGLSGLEGLVGIPAQV-------GGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP---DELGFGYRHS 152 (273)
T ss_pred HHHHHHHHCCCcchhhhcCCCcch-------hhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH---HHcccccccc
Confidence 9999999999 4777777777766 555555666666 4789999999997 899887 43 5999999977
Q ss_pred CCCCeEEEEEEEEEEEec
Q 009115 234 GGASFGVIVAWKIKLVDV 251 (543)
Q Consensus 234 g~g~~Givt~~~lk~~p~ 251 (543)
....=-||++++||+.|-
T Consensus 153 ~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 153 GLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCCCEEEEEEEEEECCC
Confidence 432213999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.04 E-value=1.1e-09 Score=107.26 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=109.6
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCcH
Q 009115 76 TPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATL 155 (543)
Q Consensus 76 ~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~~ 155 (543)
-....+.+.|++.+ + ++|+.+.|+|+|....+.+.+ +++ -+++|+.++++. .+++|++|+.+
T Consensus 16 GG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~----~vv-~~~~~~~~~~~~--~~v~~~AG~~l 77 (257)
T PRK13904 16 GPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN----LAI-LGKNFDYIKIDG--ECLEIGGATKS 77 (257)
T ss_pred CceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc----EEE-EccCcCeEEEeC--CEEEEEcCCcH
Confidence 34566778888887 5 899999999999876655543 444 345688888754 47999999999
Q ss_pred HHHHHHHHHhC-CCCeecCCCCCCccccccCcCCCCCCCccccC-chhhheeeEEEEeeCCcEeeccCCCccchhheecc
Q 009115 156 GQLYYRIAEKS-PNLAFPAGSCPSVGTGGHISGGGWGILLRKYG-LAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGG 233 (543)
Q Consensus 156 ~~l~~~l~~~g-~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G-~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~ 233 (543)
.+|.+.+.++| .|+++..|.+++| ||+.-++.+.|| .+.|.|.++++++ |+ + ...|+.|+||-+
T Consensus 78 ~~l~~~~~~~gl~GlE~l~gIPGtV-------GGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S 143 (257)
T PRK13904 78 GKIFNYAKKNNLGGFEFLGKLPGTL-------GGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSS 143 (257)
T ss_pred HHHHHHHHHCCCchhhhhcCCCccH-------HHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCc
Confidence 99999999998 4677777777766 444445555665 4689999999998 42 2 236999999987
Q ss_pred CCCCeEEEEEEEEEEEecCC
Q 009115 234 GGASFGVIVAWKIKLVDVPS 253 (543)
Q Consensus 234 g~g~~Givt~~~lk~~p~~~ 253 (543)
.. -.||++++||+.|..+
T Consensus 144 ~~--~~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 144 GI--NGVILEARFKKTHGFD 161 (257)
T ss_pred CC--CcEEEEEEEEECCCCH
Confidence 42 2599999999988653
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.33 E-value=0.02 Score=53.21 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=62.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHH
Q 009115 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQ 157 (543)
Q Consensus 79 p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 157 (543)
+..++.|+|.+|+.++++ .+-...+.+||++....-. .+......+||++++.++ .|..+++.+++|+++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~-~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMR-EGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHH-TTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcc-cCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 356789999999999988 2336788999998531110 000012589999987555 4555578999999999999
Q ss_pred HHHH---------HHHhCCCCeecCCCCCCccccccCcCCC
Q 009115 158 LYYR---------IAEKSPNLAFPAGSCPSVGTGGHISGGG 189 (543)
Q Consensus 158 l~~~---------l~~~g~~l~~~~g~~~~vgigG~~~ggg 189 (543)
+.+. |.++-..+ -....-+..++||.+..+.
T Consensus 77 l~~~~~~~~~~p~L~~~~~~i-as~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 77 LEESPLIQQYFPALAQAARRI-ASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCTS-S-HHHHTT-BHHHHHHHTB
T ss_pred HhhcchhhhhHHHHHHHHHHh-CCHhHeeeeeeccccccCc
Confidence 9876 22211000 0112234567889885554
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=95.01 E-value=0.069 Score=53.11 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=85.6
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHHHH
Q 009115 81 VIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQLY 159 (543)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 159 (543)
-+..|+|.+|..++++ +++-...+.+|||...... ... ...++||++++ ++ .|..+.+.+++|+++++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~--~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~ 76 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRT--DKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLR 76 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCC--CCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHH
Confidence 4678999999888765 3433467899999974221 111 23689999986 55 555667899999999999997
Q ss_pred HHH------HHhCCCCeecCCCCCCccccccCcCCCCCCCccccCchhh--heeeEEEEeeCCcEeeccCCCccchhhee
Q 009115 160 YRI------AEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAAD--NIVDARMIDVQGRFLDRKSMGEDLFWAIR 231 (543)
Q Consensus 160 ~~l------~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d--~v~~~~vV~~~G~~~~~~~~~~dl~~a~r 231 (543)
+.. .+.-... -.+..-+..+|||.+..+-- .+...= ..+..+|+..+++.+.- .|+|-
T Consensus 77 ~~~~~~~~L~~a~~~v-as~qIRN~aTiGGNl~~a~p------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~~--- 142 (258)
T PRK09799 77 DARFIPAALREALGFV-YSRHLRNQSTIGGEIAARQE------ESVLLPVLLALDAELVFGNGETLSI----EDYLA--- 142 (258)
T ss_pred hCcccHHHHHHHHHHh-CCHHHhccchhHHHhhcCCc------cHHHHHHHHHcCCEEEEecCcEEeH----HHhcC---
Confidence 632 2110000 01223355678888875421 122211 22566777777754431 24442
Q ss_pred ccCCCCeEEEEEEEEE
Q 009115 232 GGGGASFGVIVAWKIK 247 (543)
Q Consensus 232 G~g~g~~Givt~~~lk 247 (543)
|. .+ .|||++.+.
T Consensus 143 g~-~~--Eil~~I~iP 155 (258)
T PRK09799 143 CP-CD--RLLTEIIIP 155 (258)
T ss_pred CC-CC--cEEEEEEcC
Confidence 22 11 489888765
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.94 E-value=0.18 Score=50.15 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=82.9
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHHHHH
Q 009115 82 IITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQLYY 160 (543)
Q Consensus 82 vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 160 (543)
++.|+|.+|..++++ +++-.-.+.+|||+..-.-. .. +..++||++++ ++ .|..+.+.+++|+++++.++.+
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~-~~--~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT-RT--DKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc-cc--CCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 578999998887665 34333567899999742211 11 12588999986 55 4555667999999999999875
Q ss_pred H------HHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCch--hhheeeEEEEeeCCcEeeccCCCccchhheec
Q 009115 161 R------IAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLA--ADNIVDARMIDVQGRFLDRKSMGEDLFWAIRG 232 (543)
Q Consensus 161 ~------l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~--~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG 232 (543)
. |.+.-. ..-.+...+.-++||.+..+.-. +.. .=..+..+|+..+++.+.- .|+|-+
T Consensus 77 ~~~~~~~L~~aa~-~va~~qIRN~gTlGGNl~~a~p~------~D~~~~LlaldA~v~l~~~r~vp~----~dF~~g--- 142 (257)
T TIGR03312 77 NELTPAALKEALG-FVYSRHIRNQATIGGEIAAFQSE------SLLLPVLLALKATVVLANASQMDI----EDYLAS--- 142 (257)
T ss_pred CcchHHHHHHHHH-HhCCHHHhccccHHHHhhcCCCc------hHHHHHHHHcCCEEEEecCcEEeH----HHhcCC---
Confidence 2 222110 00122344566789988755321 211 1123456666666544321 244432
Q ss_pred cCCCCeEEEEEEEEE
Q 009115 233 GGGASFGVIVAWKIK 247 (543)
Q Consensus 233 ~g~g~~Givt~~~lk 247 (543)
. .+ -+||++.+.
T Consensus 143 ~-~~--Ell~~V~iP 154 (257)
T TIGR03312 143 E-QR--ELIVEVIIP 154 (257)
T ss_pred C-CC--cEEEEEEcC
Confidence 2 12 488888765
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=93.64 E-value=0.13 Score=52.10 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=85.9
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCC-CCcccCCCCCeEEEEeccCccE-EEe-CCCCEEEEeCCCcHHH
Q 009115 81 VIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEG-LSFRTSYNSPFVIIDMINLSSI-SID-VENKTAWVQVGATLGQ 157 (543)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g-~~~~~~~~~~givIdl~~~~~i-~~d-~~~~~v~v~~G~~~~~ 157 (543)
-++.|+|.+|..++++. +. ...+.+|||+... ...+.. ....+||++++.++ .|. .+++.+++|+++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~--~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~ 79 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHND--RYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQ 79 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCC--CCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHH
Confidence 57899999998887763 22 3578999999632 111111 23688999987655 454 2446799999999999
Q ss_pred HHH--HHHHhCC------CCeecCCCCCCccccccCcCCCCCCCccccCchhhhe-----ee--EEEEeeCCcEeeccCC
Q 009115 158 LYY--RIAEKSP------NLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNI-----VD--ARMIDVQGRFLDRKSM 222 (543)
Q Consensus 158 l~~--~l~~~g~------~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v-----~~--~~vV~~~G~~~~~~~~ 222 (543)
+.+ .+.++-. ...-.+...+..+|||.+..+... .|.+ +. +++..++|+....-
T Consensus 80 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~---------sD~~~~Llal~A~v~i~~~~g~R~vp~-- 148 (291)
T PRK09971 80 IIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGATS---------ADSAPPLFALDAKLEIHSPNGVRFVPI-- 148 (291)
T ss_pred HhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCcc---------hhHHHHHHHcCCEEEEEcCCCcEEEEH--
Confidence 975 1211100 000112344567789988765321 3332 33 44455566422211
Q ss_pred CccchhheeccCCCCeEEEEEEEEEEEec
Q 009115 223 GEDLFWAIRGGGGASFGVIVAWKIKLVDV 251 (543)
Q Consensus 223 ~~dl~~a~rG~g~g~~Givt~~~lk~~p~ 251 (543)
.|+|-+.+----..=-|||++.+...+.
T Consensus 149 -~df~~g~~~t~l~~~Eil~~I~iP~~~~ 176 (291)
T PRK09971 149 -NGFYTGPGKVSLEHDEILVAFIIPPEPY 176 (291)
T ss_pred -HHhcCCccccccCCCceEEEEEeCCCCC
Confidence 2555433210000113999998875443
No 38
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=92.78 E-value=0.056 Score=53.92 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=25.0
Q ss_pred hhhhhhhhhhhHHHHHHhhhccCCCCCccCCCCC
Q 009115 498 SVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSI 531 (543)
Q Consensus 498 ~~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~qsI 531 (543)
++| ..-||..++|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDW-RRHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHH-HHHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 478 467899999999999999999999988877
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.49 E-value=0.3 Score=52.82 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=89.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCC-CcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHH
Q 009115 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGL-SFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLG 156 (543)
Q Consensus 79 p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~-~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~ 156 (543)
..-++.|+|.+|+.++++- +. ...+.+||++..-. ..... ....+||++++.++ .|..+.+.+++|+++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~--~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMR--DLPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCC--CCCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 3568999999999888763 32 35789999996321 11111 23689999987665 455566789999999999
Q ss_pred HHHHHHHHhCCCC------eecCCCCCCccccccCcCCCCCCCccccCchhhh--ee--eEEEEeeCCcEeeccCCCccc
Q 009115 157 QLYYRIAEKSPNL------AFPAGSCPSVGTGGHISGGGWGILLRKYGLAADN--IV--DARMIDVQGRFLDRKSMGEDL 226 (543)
Q Consensus 157 ~l~~~l~~~g~~l------~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~--v~--~~~vV~~~G~~~~~~~~~~dl 226 (543)
++.+.+.++=..| .-.....+..+|||.+..+.- .+...=- .+ .+++...+|+....- .|+
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP------~sD~~p~LlALdA~v~l~~~~G~R~vpl---~dF 336 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP------IGDSPPALIALGARLTLRKGEGRRTLPL---EDF 336 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC------chHHHHHHHHcCCEEEEEcCCCcEEEeH---HHh
Confidence 9987665431000 001224456678888876532 1222111 13 344455566422211 255
Q ss_pred hhheeccCCCCeEEEEEEEEEE
Q 009115 227 FWAIRGGGGASFGVIVAWKIKL 248 (543)
Q Consensus 227 ~~a~rG~g~g~~Givt~~~lk~ 248 (543)
|-+++----..=-||+++.+..
T Consensus 337 ~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 337 FIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred hcccccccCCCCceEEEEEecC
Confidence 5543311001113999988763
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.84 E-value=0.4 Score=49.17 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=63.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHHHH
Q 009115 81 VIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQLY 159 (543)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 159 (543)
-++.|+|.+|..++++- ++ .-.+.+|||+...... .+......+||++++.++ .|..+.+.+++|+++++.++.
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~-~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLR-RGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHh-cccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 57899999988877653 32 3467999998532111 110123688999986554 344556789999999999985
Q ss_pred HH---------HHHhCCCCeecCCCCCCccccccCcCC
Q 009115 160 YR---------IAEKSPNLAFPAGSCPSVGTGGHISGG 188 (543)
Q Consensus 160 ~~---------l~~~g~~l~~~~g~~~~vgigG~~~gg 188 (543)
+. |.+.=. ..-.+...+..+|||.+.+.
T Consensus 81 ~~~~i~~~~p~L~~a~~-~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 81 EDALVRTRWPALAQAAR-AVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred hChhhHhHhHHHHHHHH-HhCCHHHhCceecHHhhhcc
Confidence 42 222100 00012234566789998853
No 41
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=89.43 E-value=0.47 Score=47.38 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCC-Ccc-cCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHHHHHH
Q 009115 85 PIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGL-SFR-TSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQLYYR 161 (543)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~-~~~-~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~ 161 (543)
|+|.+|+.++++. +. ...+.+||++..-. -.. .. ....+||++++.++ .|+.+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~--~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~ 74 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLP--MKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKN 74 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCC--CCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhC
Confidence 7888888887764 22 35789999986321 111 00 13688999987776 56667789999999999999642
Q ss_pred ---------HHHhCCCCeecCCCCCCccccccCcCC
Q 009115 162 ---------IAEKSPNLAFPAGSCPSVGTGGHISGG 188 (543)
Q Consensus 162 ---------l~~~g~~l~~~~g~~~~vgigG~~~gg 188 (543)
|.+.= ...-.+..-+..++||.+..+
T Consensus 75 ~~i~~~~p~L~~a~-~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 75 PLIKRALPCFVDAA-SAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHhHHHHHHH-HHhcCHHHhcceecHHhccCc
Confidence 11110 000012334567889998765
No 42
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=86.13 E-value=0.66 Score=46.08 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=18.7
Q ss_pred hhhhhhhhhHHHHHHhhhccCCCCCccCC
Q 009115 500 WGKKYFNHNFDRLVHVKTSVDPDNFFRNE 528 (543)
Q Consensus 500 ~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~ 528 (543)
..+.| .++++..++|+++||+|+|.++
T Consensus 228 l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 228 LRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 33444 7999999999999999999764
No 43
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=85.41 E-value=1.8 Score=41.89 Aligned_cols=28 Identities=11% Similarity=0.322 Sum_probs=20.5
Q ss_pred hhhhhhhhh-hHHHHHHhhhccCCCCCcc
Q 009115 499 VWGKKYFNH-NFDRLVHVKTSVDPDNFFR 526 (543)
Q Consensus 499 ~~~~~Yyg~-n~~RL~~IK~kyDP~nvF~ 526 (543)
.|-..++|+ .+.-+++||+.+||+|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 216 PYLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 344455555 7999999999999999986
No 44
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=84.50 E-value=1.2 Score=43.71 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=20.3
Q ss_pred hhHHHHHHhhhccCCCCCccCC
Q 009115 507 HNFDRLVHVKTSVDPDNFFRNE 528 (543)
Q Consensus 507 ~n~~RL~~IK~kyDP~nvF~~~ 528 (543)
.++.+-.+||+++||+|+|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 6899999999999999999876
No 45
>PLN00192 aldehyde oxidase
Probab=81.69 E-value=3.1 Score=50.96 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=68.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHH
Q 009115 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQ 157 (543)
Q Consensus 79 p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 157 (543)
..-++.|.|.+|+.++++.....+-...+..||++..-.-. .. ...++||++++.++ .|..+.+.+++|+++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~--~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EE--LYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cC--CCCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 45689999999988876632100123667889998632211 11 23689999987665 5555667999999999999
Q ss_pred HHHHHHHhCC-C--Ce--------e-cCCCCCCccccccCcCC
Q 009115 158 LYYRIAEKSP-N--LA--------F-PAGSCPSVGTGGHISGG 188 (543)
Q Consensus 158 l~~~l~~~g~-~--l~--------~-~~g~~~~vgigG~~~gg 188 (543)
+.+.+.+.-. . +. + .....+.-+|||.+..+
T Consensus 310 l~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 310 AIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 9876554310 0 00 0 12234556788888755
No 46
>PLN02906 xanthine dehydrogenase
Probab=81.68 E-value=2 Score=52.53 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=56.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCC-cccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHH
Q 009115 80 LVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLS-FRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQ 157 (543)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~-~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 157 (543)
.-++.|+|.+|+.++++- +. ...+.+||++..-.- .... ....+||++++.++ .|..+...+++|+++++.+
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~--~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~e 302 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNA--QYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSE 302 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccC--CCCeEEECCCChhhhcEEecCCEEEEecCCcHHH
Confidence 458899999998887653 22 246789999963211 1111 23689999987665 5555667899999999999
Q ss_pred HHHHHHH
Q 009115 158 LYYRIAE 164 (543)
Q Consensus 158 l~~~l~~ 164 (543)
+.+.|.+
T Consensus 303 l~~~l~~ 309 (1319)
T PLN02906 303 LQNLFRK 309 (1319)
T ss_pred HHHHHHH
Confidence 9986544
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=80.29 E-value=4.5 Score=49.62 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=56.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCC-cccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHH
Q 009115 80 LVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLS-FRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQ 157 (543)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~-~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 157 (543)
.-++.|+|.+|+.++++. +. .-.+..||++..-.- .... +...+||+++..++ .|..+.+.+++|+++++.+
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~--~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~e 310 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGV--FHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQ 310 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccC--CCCeEEECCCChhhhcEEEcCCEEEEeccccHHH
Confidence 468899999999988664 22 356789999974211 1111 12579999987666 5655677999999999999
Q ss_pred HHHHHH
Q 009115 158 LYYRIA 163 (543)
Q Consensus 158 l~~~l~ 163 (543)
+.+.|.
T Consensus 311 l~~~l~ 316 (1330)
T TIGR02969 311 VKDILA 316 (1330)
T ss_pred HHHHHH
Confidence 988644
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=74.38 E-value=11 Score=37.84 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=52.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCc-cE-EEeCCCCEEEEeCCCcHH
Q 009115 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLS-SI-SIDVENKTAWVQVGATLG 156 (543)
Q Consensus 79 p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~-~i-~~d~~~~~v~v~~G~~~~ 156 (543)
+..+.+|.|.+|...+++ +.+ .-.+.+|||+....--.. -.....+||++++. .. .+..+.+.+++|+-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~-~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLG-IERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcc-cCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 567889999987666655 455 678999999976311110 01236789999874 22 344466779999999999
Q ss_pred HHH
Q 009115 157 QLY 159 (543)
Q Consensus 157 ~l~ 159 (543)
++.
T Consensus 78 ei~ 80 (284)
T COG1319 78 EIA 80 (284)
T ss_pred HHH
Confidence 996
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=63.74 E-value=16 Score=37.86 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=83.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE-EEeCCCCEEEEeCCCcHHH
Q 009115 79 PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI-SIDVENKTAWVQVGATLGQ 157 (543)
Q Consensus 79 p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 157 (543)
-...+.|.+.+|...++.. +-..++..|++.+.-....... +=..+|-..++.++ +|+..++.+++++|+++.+
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr-~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMR-DLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHh-hcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 3457889999998887643 3356677777775422211100 11345666777666 6777888999999999999
Q ss_pred HHHHHHHhCCCCe--e-cCC---CCCCccccccCcCCCCCCCccccCchh--hheeeEEEEeeCCcEee-ccCCCccchh
Q 009115 158 LYYRIAEKSPNLA--F-PAG---SCPSVGTGGHISGGGWGILLRKYGLAA--DNIVDARMIDVQGRFLD-RKSMGEDLFW 228 (543)
Q Consensus 158 l~~~l~~~g~~l~--~-~~g---~~~~vgigG~~~ggg~G~~~~~~G~~~--d~v~~~~vV~~~G~~~~-~~~~~~dl~~ 228 (543)
.+..|..+=..|. + --| .-+.-+|||.+..|.- -|.+- =..++.++++-.|+-.+ -.- .|+|-
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~RtlPL--e~~Fi 349 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRRTLPL--EDYFI 349 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCcccccH--HHHHH
Confidence 9999876521110 0 011 2234467887766642 12221 22367788887766544 221 36777
Q ss_pred hee
Q 009115 229 AIR 231 (543)
Q Consensus 229 a~r 231 (543)
+|.
T Consensus 350 ~Y~ 352 (493)
T COG4630 350 AYG 352 (493)
T ss_pred Hhh
Confidence 764
No 50
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=63.32 E-value=13 Score=40.61 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=26.5
Q ss_pred hhhhhhhh-hhHHHHHHhhhccCCCCCccCCCCCC
Q 009115 499 VWGKKYFN-HNFDRLVHVKTSVDPDNFFRNEQSIP 532 (543)
Q Consensus 499 ~~~~~Yyg-~n~~RL~~IK~kyDP~nvF~~~qsI~ 532 (543)
.|-...|| +.+.-+++||+.+||+|+++-..-++
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 34445566 67999999999999999998666553
No 51
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=62.97 E-value=18 Score=40.13 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=28.4
Q ss_pred hhhhhhhhh-hhHHHHHHhhhccCCCCCccCCCCCC
Q 009115 498 SVWGKKYFN-HNFDRLVHVKTSVDPDNFFRNEQSIP 532 (543)
Q Consensus 498 ~~~~~~Yyg-~n~~RL~~IK~kyDP~nvF~~~qsI~ 532 (543)
..|-..+|| +.++-+++||+.+||+|+++-..=++
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 367777777 57999999999999999998665454
No 52
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=62.74 E-value=13 Score=40.22 Aligned_cols=68 Identities=24% Similarity=0.416 Sum_probs=50.3
Q ss_pred CcccceEEcCCCCCcHHHHHhhhccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHHcC-CeEEEe-----eCCCC-CCC
Q 009115 44 TSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYG-MQIRVR-----SGGHD-YEG 116 (543)
Q Consensus 44 ~~~~~~v~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~-~~v~~~-----ggGh~-~~g 116 (543)
.++.+.++.-+-|+-+.+..- .... .....|-+++.|.++|+|..++++|+++- .||.+. +|||. |..
T Consensus 122 ~~I~gvvIsAGIP~le~A~El-I~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweD 196 (717)
T COG4981 122 APIDGVVISAGIPSLEEAVEL-IEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWED 196 (717)
T ss_pred CCcceEEEecCCCcHHHHHHH-HHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhh
Confidence 467889999999999887642 1111 23468999999999999999999999984 566653 44544 654
No 53
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=62.60 E-value=5.2 Score=42.69 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=23.8
Q ss_pred hhhhhhhh-hhHHHHHHhhhccCCCCCccC
Q 009115 499 VWGKKYFN-HNFDRLVHVKTSVDPDNFFRN 527 (543)
Q Consensus 499 ~~~~~Yyg-~n~~RL~~IK~kyDP~nvF~~ 527 (543)
.|....|+ ..++-|++||+.+||+|+|+-
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 45566666 579999999999999999863
No 54
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=59.71 E-value=34 Score=30.63 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=32.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCeEEEeeC-CCCCCCCCcc
Q 009115 81 VIITPIHVSHIQAAIKCSQKYGMQIRVRSG-GHDYEGLSFR 120 (543)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~v~~~gg-Gh~~~g~~~~ 120 (543)
+=+.|++-+-+...+.+++.+.+||.+... |+.+.+.-.+
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~g 48 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVSG 48 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEec
Confidence 346799999999999999999999998875 7876655443
No 55
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=45.35 E-value=13 Score=38.76 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=18.7
Q ss_pred hhh-HHHHHHhhhccCCCCCccC
Q 009115 506 NHN-FDRLVHVKTSVDPDNFFRN 527 (543)
Q Consensus 506 g~n-~~RL~~IK~kyDP~nvF~~ 527 (543)
..+ ++-.++||+++||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 7889999999999999964
No 56
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=44.19 E-value=11 Score=39.86 Aligned_cols=21 Identities=29% Similarity=0.782 Sum_probs=19.3
Q ss_pred hhHHHHHHhhhccCCCCCccC
Q 009115 507 HNFDRLVHVKTSVDPDNFFRN 527 (543)
Q Consensus 507 ~n~~RL~~IK~kyDP~nvF~~ 527 (543)
.|+++-.+||+++||+++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 699999999999999999943
No 57
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.57 E-value=41 Score=34.33 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=41.1
Q ss_pred ceEEcCCCCCcHHHHHhhhccccCCCCCCCCceEEEEcCC------HHHHHHHHHHHHHcC------CeEEEeeCCC
Q 009115 48 KVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIH------VSHIQAAIKCSQKYG------MQIRVRSGGH 112 (543)
Q Consensus 48 ~~v~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~~------~~dv~~~v~~a~~~~------~~v~~~ggGh 112 (543)
+.|..|+...|.+.++.- +.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||.
T Consensus 18 ~vITs~~gAa~~D~~~~~--~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRTL--KRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHHH--HHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 456677888899887653 33664 4566777765 688999999998754 5567777775
No 58
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=40.34 E-value=1.3e+02 Score=31.99 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCeEEEeeCC
Q 009115 77 PKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGG 111 (543)
Q Consensus 77 ~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ggG 111 (543)
+....|+.|+..|-...+.+.++++|+++.-|+.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 35679999999999999999999999999999988
No 59
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=30.26 E-value=60 Score=34.85 Aligned_cols=57 Identities=32% Similarity=0.387 Sum_probs=41.4
Q ss_pred ceEEcCCCCCcHHHHHhhhccccCCCCCCCCceEEEEcCCH------HHHHHHHHHHHHc--CCeEEEeeCC
Q 009115 48 KVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHV------SHIQAAIKCSQKY--GMQIRVRSGG 111 (543)
Q Consensus 48 ~~v~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~~~------~dv~~~v~~a~~~--~~~v~~~ggG 111 (543)
+.|..|+...+.+.++. -+.||. .-...++|..+ .+|.++++.+.+. .+=|.+||||
T Consensus 139 ~viTs~~gAa~~D~~~~--~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILTV--LRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHHH--HHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 45667788889988764 345774 34677777766 8899999888874 5567778877
No 60
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=29.49 E-value=57 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCeEEEeeCCCCCC
Q 009115 91 IQAAIKCSQKYGMQIRVRSGGHDYE 115 (543)
Q Consensus 91 v~~~v~~a~~~~~~v~~~ggGh~~~ 115 (543)
..+.++|++++++||.|.++|..+.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567899999999999999999865
No 61
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.14 E-value=1.1e+02 Score=27.67 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=26.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHHcCCeEEEee
Q 009115 80 LVIITPIHVSHIQAAIKCSQKYGMQIRVRS 109 (543)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~v~~~g 109 (543)
..|+.|.+.+|+..+++.|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 467999999999999999998888888773
No 62
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=24.02 E-value=42 Score=37.06 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=18.3
Q ss_pred HHHHHHhhhccCCCCCccCC
Q 009115 509 FDRLVHVKTSVDPDNFFRNE 528 (543)
Q Consensus 509 ~~RL~~IK~kyDP~nvF~~~ 528 (543)
+.+-++|++++||+++|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78889999999999999875
No 63
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=23.71 E-value=42 Score=37.31 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=22.3
Q ss_pred hhhhhhhhhhHHHHHHhhhccCCCCCccCC
Q 009115 499 VWGKKYFNHNFDRLVHVKTSVDPDNFFRNE 528 (543)
Q Consensus 499 ~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~ 528 (543)
.+...| + +.+.++|++++||+++|.++
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 454554 5 99999999999999999875
No 64
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=22.92 E-value=4e+02 Score=29.74 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCCCCCCCCCcccCCCCCeEEEEec--cCccE--E-EeCC---CCEEEEeCCCc----H
Q 009115 88 VSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMI--NLSSI--S-IDVE---NKTAWVQVGAT----L 155 (543)
Q Consensus 88 ~~dv~~~v~~a~~~~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~--~~~~i--~-~d~~---~~~v~v~~G~~----~ 155 (543)
.++|.+.+..+.+++-++.....-.+....-.+.+ ++||-| .|=+- . -+++ ..+.-|=|--+ .
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD-----VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vY 386 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD-----VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVY 386 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC-----eEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHH
Confidence 46799999999999999999988777666666654 788754 22111 0 1222 12333433333 4
Q ss_pred HHHHHHHHHhCCCCeecCCCCCCccccccCcCCCCCCCccccCch-------hhheeeEEEEeeCCcEee-ccCCCccch
Q 009115 156 GQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLA-------ADNIVDARMIDVQGRFLD-RKSMGEDLF 227 (543)
Q Consensus 156 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~G~~~~~~G~~-------~d~v~~~~vV~~~G~~~~-~~~~~~dl~ 227 (543)
.++++.+.++|..=....|+.+.||+ ++-- +-.||.- .|- .++||+.+|+++. -..+..|+|
T Consensus 387 q~~I~~ck~nGafDp~TmGsV~NVGL---MAqK-----AEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~GDIw 456 (741)
T TIGR00178 387 QVVIEDCKQNGAFDPTTMGTVPNVGL---MAQK-----AEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEAGDIW 456 (741)
T ss_pred HHHHHHHHhcCCCCcccccCCcchhH---hHHH-----HHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccCCcch
Confidence 66677788887322223456666543 3222 2334432 222 3788999999997 455678999
Q ss_pred hhee
Q 009115 228 WAIR 231 (543)
Q Consensus 228 ~a~r 231 (543)
.++.
T Consensus 457 Rmcq 460 (741)
T TIGR00178 457 RMCQ 460 (741)
T ss_pred hhhh
Confidence 8886
No 65
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=22.91 E-value=1.6e+02 Score=25.47 Aligned_cols=35 Identities=3% Similarity=0.035 Sum_probs=30.3
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEe
Q 009115 70 RFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVR 108 (543)
Q Consensus 70 r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ 108 (543)
.|++ ...+|+...+++|+.++-+-|++.|++..++
T Consensus 51 ~~~g----~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 51 NLDN----MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred HhCC----CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3754 6899999999999999999999999886663
No 66
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=22.73 E-value=1.9e+02 Score=24.74 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=31.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCe-EEEeeCCCC
Q 009115 77 PKPLVIITPIHVSHIQAAIKCSQKYGMQ-IRVRSGGHD 113 (543)
Q Consensus 77 ~~p~~vv~P~~~~dv~~~v~~a~~~~~~-v~~~ggGh~ 113 (543)
..+..|+.+.|++|+.++.+-|++.|++ ..++-.|+.
T Consensus 46 G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 46 GQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 5889999999999999999999999987 445555654
No 67
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.46 E-value=83 Score=32.45 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEee--CCCC
Q 009115 86 IHVSHIQAAIKCSQKYGMQIRVRS--GGHD 113 (543)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~v~~~g--gGh~ 113 (543)
=|.+||+++|++|+++||.|.+-= =||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 388999999999999999998753 3555
No 68
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=22.11 E-value=1.3e+02 Score=27.65 Aligned_cols=32 Identities=6% Similarity=0.234 Sum_probs=27.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHH--cCCeEEEeeCC
Q 009115 80 LVIITPIHVSHIQAAIKCSQK--YGMQIRVRSGG 111 (543)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~--~~~~v~~~ggG 111 (543)
..|+.|.+.+|+..+++.+-+ ..-|+.+|-..
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 678999999999999999999 66898887643
No 69
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=22.03 E-value=1.8e+02 Score=29.44 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=37.1
Q ss_pred EEcCCCCCcHHHHHhhhccccCCCCCCCCce-EEEEcCCHHHHHHHHHHHHHcCCeEEEeeC
Q 009115 50 IYTQYNSSYSSVLELTLQNLRFSTPATPKPL-VIITPIHVSHIQAAIKCSQKYGMQIRVRSG 110 (543)
Q Consensus 50 v~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~P~~~~dv~~~v~~a~~~~~~v~~~gg 110 (543)
|=.|.+-+|...++ .+|. -++..-++|+|.+++.++.+.++++.+.|-
T Consensus 242 iP~p~~vd~~~wlk-------------~ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~Ge 290 (324)
T COG2144 242 IPYPADVDFRQWLK-------------RYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGE 290 (324)
T ss_pred cCCcccccHHHHHH-------------hCCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEE
Confidence 44677778877654 3455 667777778999999999999999999873
No 70
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=21.96 E-value=87 Score=31.81 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEee--CCCC
Q 009115 85 PIHVSHIQAAIKCSQKYGMQIRVRS--GGHD 113 (543)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~v~~~g--gGh~ 113 (543)
.=|.+||+++|++|+++|+.|.+-= =||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 3477999999999999999998752 3665
No 71
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.38 E-value=48 Score=24.94 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=12.6
Q ss_pred CCCccceehhhHHHHHH
Q 009115 1 MKPQSTMIVPSTLALLL 17 (543)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (543)
||+.-++.++..|+|.+
T Consensus 1 Mkk~ksifL~l~~~LsA 17 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSA 17 (61)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 78888887777777764
No 72
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.81 E-value=1.8e+02 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=30.9
Q ss_pred cCCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEEe
Q 009115 70 RFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVR 108 (543)
Q Consensus 70 r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~~ 108 (543)
||.. -..|..||..++++++.++.+.|++.|++..+.
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 5753 358999999999999999999999999875443
No 73
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=20.35 E-value=6.7e+02 Score=28.15 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=62.9
Q ss_pred HHHhhcccCCCCCcccceEEcCCCCCcHHH-HHhhhccccCCCCCCCCc-eEEEEcCCHHHHHHHHHHHHHcC-CeEEEe
Q 009115 32 FLQCLSLHSENSTSISKVIYTQYNSSYSSV-LELTLQNLRFSTPATPKP-LVIITPIHVSHIQAAIKCSQKYG-MQIRVR 108 (543)
Q Consensus 32 ~~~c~~~~~~~~~~~~~~v~~~~~~~y~~~-~~~~~~n~r~~~~~~~~p-~~vv~P~~~~dv~~~v~~a~~~~-~~v~~~ 108 (543)
.+-|+....+....-..-++..+.+.-+-. -.+| ..+.| ..|..|++++|+++++.+|..++ -|+.+|
T Consensus 402 HDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~---------l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiR 472 (627)
T COG1154 402 HDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSF---------LRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIR 472 (627)
T ss_pred HHHHhccCCeEEEEecCcccCCCCCccccHHHHHH---------HhcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 345777766544333344444444443322 1112 12345 45678999999999999999998 699887
Q ss_pred eC-CCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCcHHHHHHHH
Q 009115 109 SG-GHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRI 162 (543)
Q Consensus 109 gg-Gh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l 162 (543)
== |+......... .-.++..+ ..-+-+..+.+.+.=|..+..-....
T Consensus 473 yPrg~~~~~~~~~~-----~~~~~~Gk--~~i~~~G~~vail~~G~~~~~al~va 520 (627)
T COG1154 473 YPRGNGVGVILTPE-----LEPLEIGK--GELLKEGEKVAILAFGTMLPEALKVA 520 (627)
T ss_pred ecCCCCCCCCcccc-----cccccccc--eEEEecCCcEEEEecchhhHHHHHHH
Confidence 43 33322111100 11222332 11123456678888888876554433
No 74
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.32 E-value=69 Score=34.41 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=38.2
Q ss_pred ceEEcCCCCCcHHHHHhhhccccCCC-CCCCCceEEEEcCCHHHHHHHHHHHHHc---CCeEEEeeCCC
Q 009115 48 KVIYTQYNSSYSSVLELTLQNLRFST-PATPKPLVIITPIHVSHIQAAIKCSQKY---GMQIRVRSGGH 112 (543)
Q Consensus 48 ~~v~~~~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~P~~~~dv~~~v~~a~~~---~~~v~~~ggGh 112 (543)
+.|..|+...+.+.+.. -+.||.. .....|..|==...+.+|.++++.+.+. .+=|.+||||.
T Consensus 133 ~vits~~~aa~~D~~~~--~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 133 GVITSQTGAALADILHI--LKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EEEeCCccHHHHHHHHH--HHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 45667888889988764 3456742 2222333333334457899999888763 34466666664
No 75
>PLN03158 methionine aminopeptidase; Provisional
Probab=20.23 E-value=1.7e+02 Score=31.15 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=13.3
Q ss_pred eCCCCEEEEeCCCcHHH
Q 009115 141 DVENKTAWVQVGATLGQ 157 (543)
Q Consensus 141 d~~~~~v~v~~G~~~~~ 157 (543)
=...++++||||+..+.
T Consensus 325 l~~GMVfTIEP~i~~g~ 341 (396)
T PLN03158 325 MKAGQVFTIEPMINAGV 341 (396)
T ss_pred ecCCcEEEECCeeccCc
Confidence 35678999999998753
No 76
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.16 E-value=83 Score=32.35 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEe--eCCCC
Q 009115 85 PIHVSHIQAAIKCSQKYGMQIRVR--SGGHD 113 (543)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~v~~~--ggGh~ 113 (543)
.=|.+||+++|++|+++||.|.+- .=||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 457799999999999999999874 45776
No 77
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.13 E-value=99 Score=31.40 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEe
Q 009115 85 PIHVSHIQAAIKCSQKYGMQIRVR 108 (543)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~v~~~ 108 (543)
+=|.+||++++++|+++|+.|.+.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 358999999999999999999884
Done!