Query 009116
Match_columns 543
No_of_seqs 297 out of 1662
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 20:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 5.3E-85 1.1E-89 679.5 30.8 513 17-540 28-567 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 2.5E-70 5.4E-75 592.8 41.5 459 24-523 9-475 (559)
3 KOG1966 Sodium/hydrogen exchan 100.0 1.6E-72 3.5E-77 581.6 4.7 456 25-522 43-506 (670)
4 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 3.9E-53 8.5E-58 459.0 42.8 395 35-449 8-411 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 100.0 7.3E-51 1.6E-55 429.7 43.6 399 26-449 8-409 (429)
6 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.3E-44 2.7E-49 394.1 41.0 398 22-442 11-436 (810)
7 PRK05326 potassium/proton anti 100.0 4.5E-45 9.8E-50 401.0 37.7 384 29-452 11-397 (562)
8 COG3263 NhaP-type Na+/H+ and K 100.0 7E-43 1.5E-47 348.8 28.4 388 25-452 7-395 (574)
9 KOG4505 Na+/H+ antiporter [Ino 100.0 4E-33 8.6E-38 270.1 28.2 384 37-442 26-431 (467)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 2.9E-35 6.3E-40 309.5 -0.8 372 35-444 7-380 (380)
11 PRK03562 glutathione-regulated 100.0 1.3E-25 2.8E-30 248.5 38.9 361 29-437 10-375 (621)
12 COG0475 KefB Kef-type K+ trans 100.0 3.4E-25 7.3E-30 232.7 39.5 378 26-448 8-390 (397)
13 PLN03159 cation/H(+) antiporte 100.0 2.6E-25 5.6E-30 252.4 41.2 348 30-403 49-402 (832)
14 PRK03659 glutathione-regulated 100.0 9.2E-25 2E-29 241.3 42.7 356 32-436 13-371 (601)
15 TIGR00932 2a37 transporter, mo 99.9 1.3E-25 2.9E-30 225.5 29.2 268 35-325 3-272 (273)
16 PRK10669 putative cation:proto 99.9 2E-24 4.3E-29 237.8 40.1 367 30-440 12-386 (558)
17 COG4651 RosB Kef-type K+ trans 99.6 3E-12 6.4E-17 124.1 27.7 365 29-440 11-386 (408)
18 KOG1650 Predicted K+/H+-antipo 99.5 4E-13 8.7E-18 151.2 22.7 384 30-448 28-423 (769)
19 PRK14853 nhaA pH-dependent sod 99.2 9E-08 1.9E-12 99.9 32.4 260 87-388 68-345 (423)
20 TIGR00773 NhaA Na+/H+ antiport 98.4 3.6E-05 7.7E-10 79.2 19.7 255 87-388 58-326 (373)
21 PRK09560 nhaA pH-dependent sod 97.5 0.042 9.2E-07 57.0 23.1 259 85-388 63-335 (389)
22 PRK09561 nhaA pH-dependent sod 97.3 0.096 2.1E-06 54.4 22.9 255 87-388 65-333 (388)
23 PF13593 DUF4137: SBF-like CPA 97.1 0.19 4.1E-06 51.5 22.9 156 80-242 27-187 (313)
24 PRK14854 nhaA pH-dependent sod 96.9 0.4 8.8E-06 49.7 23.7 255 87-388 62-330 (383)
25 PRK14856 nhaA pH-dependent sod 96.9 0.17 3.8E-06 53.4 21.1 255 87-388 74-380 (438)
26 PRK14855 nhaA pH-dependent sod 96.9 0.23 4.9E-06 52.3 21.7 252 87-388 69-365 (423)
27 COG0786 GltS Na+/glutamate sym 96.7 1 2.2E-05 46.8 25.4 81 33-122 14-104 (404)
28 COG3004 NhaA Na+/H+ antiporter 96.6 0.77 1.7E-05 46.3 22.1 265 93-403 74-351 (390)
29 PF06965 Na_H_antiport_1: Na+/ 96.3 0.059 1.3E-06 55.8 12.6 262 84-388 58-333 (378)
30 PF03601 Cons_hypoth698: Conse 95.5 3.4 7.5E-05 42.1 24.5 113 47-170 24-139 (305)
31 TIGR00698 conserved hypothetic 94.4 7.1 0.00015 40.3 27.5 113 48-170 30-145 (335)
32 PF01758 SBF: Sodium Bile acid 94.4 1.1 2.4E-05 42.2 13.5 107 88-202 2-111 (187)
33 PRK03659 glutathione-regulated 94.3 1.7 3.8E-05 48.7 17.0 72 85-163 266-337 (601)
34 COG0385 Predicted Na+-dependen 94.2 5.1 0.00011 40.8 18.3 152 85-243 39-191 (319)
35 PRK03562 glutathione-regulated 94.2 1.8 3.9E-05 48.8 16.8 72 85-163 269-340 (621)
36 PRK10669 putative cation:proto 93.8 2.7 5.9E-05 46.7 17.4 72 85-163 277-348 (558)
37 TIGR00808 malonate_madM malona 93.7 2.6 5.7E-05 39.7 13.8 140 19-169 11-171 (254)
38 PF03616 Glt_symporter: Sodium 93.2 13 0.00028 39.1 31.1 83 34-121 13-101 (368)
39 COG2855 Predicted membrane pro 92.6 2 4.4E-05 43.8 12.5 154 33-201 20-177 (334)
40 PLN03159 cation/H(+) antiporte 92.2 2.1 4.6E-05 49.9 14.0 71 86-163 324-396 (832)
41 PF03956 DUF340: Membrane prot 91.3 1.1 2.4E-05 42.4 8.5 129 54-200 3-136 (191)
42 PF06826 Asp-Al_Ex: Predicted 90.4 4.3 9.4E-05 37.6 11.5 86 47-136 21-109 (169)
43 PF05982 DUF897: Domain of unk 89.0 6.1 0.00013 40.3 12.0 141 49-200 176-323 (327)
44 TIGR00841 bass bile acid trans 88.9 28 0.0006 35.1 19.8 136 89-236 13-157 (286)
45 COG2431 Predicted membrane pro 88.4 3.6 7.8E-05 40.7 9.6 89 52-157 109-202 (297)
46 COG0475 KefB Kef-type K+ trans 87.3 6.3 0.00014 41.8 11.7 71 85-162 273-344 (397)
47 TIGR00832 acr3 arsenical-resis 86.9 40 0.00088 34.7 21.3 141 88-236 47-198 (328)
48 COG3493 CitS Na+/citrate sympo 86.4 45 0.00097 34.8 22.1 61 85-152 112-172 (438)
49 PF05684 DUF819: Protein of un 85.8 51 0.0011 34.8 29.0 87 47-139 23-109 (378)
50 COG1346 LrgB Putative effector 85.7 36 0.00077 33.0 17.5 74 92-176 72-148 (230)
51 PRK12460 2-keto-3-deoxyglucona 85.6 15 0.00033 37.3 12.6 58 89-153 197-254 (312)
52 PRK03818 putative transporter; 83.5 10 0.00022 42.1 11.5 77 52-136 33-115 (552)
53 PF05145 AmoA: Putative ammoni 83.4 34 0.00074 35.1 14.5 107 31-151 159-267 (318)
54 TIGR03802 Asp_Ala_antiprt aspa 82.8 9 0.0002 42.6 10.7 122 33-171 15-143 (562)
55 TIGR00210 gltS sodium--glutama 82.3 73 0.0016 33.9 29.6 44 78-122 59-102 (398)
56 PF03812 KdgT: 2-keto-3-deoxyg 82.2 61 0.0013 33.0 22.1 129 43-174 4-136 (314)
57 TIGR03082 Gneg_AbrB_dup membra 81.8 41 0.00088 30.6 13.9 105 33-151 4-110 (156)
58 KOG3826 Na+/H+ antiporter [Ino 81.7 4 8.6E-05 39.4 6.3 80 85-170 159-238 (252)
59 PF03601 Cons_hypoth698: Conse 81.5 49 0.0011 33.7 14.7 165 254-449 3-173 (305)
60 PF03390 2HCT: 2-hydroxycarbox 81.2 28 0.00062 36.9 13.0 152 23-182 245-404 (414)
61 PRK04125 murein hydrolase regu 80.8 33 0.00071 30.8 11.5 110 24-136 7-117 (141)
62 COG2855 Predicted membrane pro 79.4 34 0.00074 35.1 12.4 150 269-449 33-182 (334)
63 TIGR00698 conserved hypothetic 78.9 62 0.0014 33.5 14.5 72 254-329 7-83 (335)
64 PRK04972 putative transporter; 78.7 27 0.00059 38.8 12.7 126 33-171 390-526 (558)
65 PF03616 Glt_symporter: Sodium 78.5 87 0.0019 32.9 15.8 90 32-127 225-322 (368)
66 PRK01658 holin-like protein; V 71.7 68 0.0015 28.0 11.9 107 25-136 5-114 (122)
67 PRK12460 2-keto-3-deoxyglucona 71.7 1.1E+02 0.0024 31.2 13.8 67 47-116 8-77 (312)
68 TIGR00783 ccs citrate carrier 71.3 68 0.0015 33.3 12.4 140 24-172 179-324 (347)
69 PRK05326 potassium/proton anti 70.7 29 0.00062 38.7 10.4 32 85-116 275-306 (562)
70 PRK04972 putative transporter; 69.4 36 0.00078 37.9 10.7 83 33-127 17-106 (558)
71 PF03818 MadM: Malonate/sodium 68.0 32 0.00069 25.8 6.6 48 18-66 9-56 (60)
72 PRK03818 putative transporter; 67.3 50 0.0011 36.7 11.3 103 52-167 403-513 (552)
73 TIGR00400 mgtE Mg2+ transporte 67.1 72 0.0016 34.4 12.3 18 183-200 427-444 (449)
74 TIGR03802 Asp_Ala_antiprt aspa 66.2 70 0.0015 35.6 12.2 106 51-169 417-529 (562)
75 PRK01821 hypothetical protein; 65.8 98 0.0021 27.5 11.4 108 24-136 9-119 (133)
76 TIGR00210 gltS sodium--glutama 65.2 1.9E+02 0.0042 30.7 18.2 158 31-195 222-390 (398)
77 TIGR01625 YidE_YbjL_dupl AspT/ 64.3 97 0.0021 28.2 10.7 107 49-168 21-135 (154)
78 COG3493 CitS Na+/citrate sympo 63.0 1.3E+02 0.0028 31.5 12.2 134 30-172 270-410 (438)
79 TIGR00844 c_cpa1 na(+)/h(+) an 61.2 76 0.0017 36.7 11.3 36 256-291 21-56 (810)
80 PF06912 DUF1275: Protein of u 60.0 1.2E+02 0.0027 28.7 11.3 30 176-205 3-33 (209)
81 COG2985 Predicted permease [Ge 59.5 65 0.0014 34.8 9.7 85 85-174 60-147 (544)
82 PF04172 LrgB: LrgB-like famil 59.4 1.2E+02 0.0025 29.3 10.8 47 87-133 52-100 (215)
83 KOG2718 Na+-bile acid cotransp 58.2 61 0.0013 33.9 9.2 110 87-201 116-225 (371)
84 TIGR00783 ccs citrate carrier 57.5 2.4E+02 0.0053 29.3 21.8 61 85-152 26-86 (347)
85 COG0798 ACR3 Arsenite efflux p 56.8 2.4E+02 0.0053 29.1 20.9 176 52-243 20-202 (342)
86 COG0786 GltS Na+/glutamate sym 54.6 2.9E+02 0.0062 29.2 14.8 158 26-193 220-391 (404)
87 PF02667 SCFA_trans: Short cha 54.5 3.1E+02 0.0067 29.6 17.3 61 247-326 15-75 (453)
88 TIGR00659 conserved hypothetic 52.6 2.3E+02 0.005 27.6 12.7 34 96-129 73-106 (226)
89 PRK04288 antiholin-like protei 52.5 2.3E+02 0.0051 27.6 24.2 36 95-130 78-113 (232)
90 COG3180 AbrB Putative ammonia 52.1 2.5E+02 0.0054 29.2 12.3 107 32-151 192-300 (352)
91 COG2985 Predicted permease [Ge 51.8 38 0.00082 36.5 6.5 137 18-170 359-509 (544)
92 PF03547 Mem_trans: Membrane t 49.5 3.2E+02 0.007 28.3 14.1 45 275-324 8-53 (385)
93 PRK10711 hypothetical protein; 48.5 2E+02 0.0043 28.1 10.5 33 95-127 73-105 (231)
94 COG3329 Predicted permease [Ge 45.7 80 0.0017 32.0 7.3 148 40-198 208-365 (372)
95 KOG1650 Predicted K+/H+-antipo 43.7 66 0.0014 37.3 7.5 74 83-164 309-382 (769)
96 PF03390 2HCT: 2-hydroxycarbox 43.3 4.4E+02 0.0095 28.1 27.6 61 85-152 95-155 (414)
97 PF03812 KdgT: 2-keto-3-deoxyg 39.0 89 0.0019 31.8 6.6 38 87-124 200-237 (314)
98 TIGR00946 2a69 he Auxin Efflux 38.0 4.5E+02 0.0096 26.7 12.4 135 56-199 184-320 (321)
99 PF00999 Na_H_Exchanger: Sodiu 37.7 17 0.00036 38.0 1.4 103 47-163 232-338 (380)
100 TIGR00793 kdgT 2-keto-3-deoxyg 37.3 1.4E+02 0.0031 30.3 7.7 39 87-125 200-238 (314)
101 PF15176 LRR19-TM: Leucine-ric 36.4 1.5E+02 0.0033 24.8 6.4 16 418-433 19-34 (102)
102 PF05982 DUF897: Domain of unk 36.2 5E+02 0.011 26.7 12.5 85 83-174 27-114 (327)
103 PF11286 DUF3087: Protein of u 34.4 87 0.0019 28.8 5.2 67 100-169 5-71 (165)
104 TIGR00932 2a37 transporter, mo 33.8 4.7E+02 0.01 25.7 16.0 61 262-328 5-65 (273)
105 KOG4255 Uncharacterized conser 27.8 7E+02 0.015 26.0 10.8 98 340-446 111-214 (439)
106 PF03788 LrgA: LrgA family; I 26.8 3.1E+02 0.0067 22.7 7.0 36 95-130 58-93 (96)
107 COG1380 Putative effector of m 24.0 5E+02 0.011 22.9 10.8 104 25-136 6-115 (128)
108 TIGR02454 CbiQ_TIGR cobalt ABC 23.6 5.8E+02 0.013 23.6 9.3 19 156-174 111-129 (198)
109 TIGR02230 ATPase_gene1 F0F1-AT 23.0 2.4E+02 0.0052 23.7 5.6 35 31-65 54-90 (100)
110 TIGR01109 Na_pump_decarbB sodi 22.3 7E+02 0.015 25.8 9.6 85 143-241 212-298 (354)
111 PF13194 DUF4010: Domain of un 22.0 7E+02 0.015 23.9 14.9 62 129-192 7-68 (211)
112 TIGR00793 kdgT 2-keto-3-deoxyg 21.9 8.1E+02 0.018 25.0 10.0 43 279-330 177-219 (314)
113 TIGR00366 conserved hypothetic 21.7 1E+03 0.022 25.6 17.4 24 303-326 49-72 (438)
114 PF03547 Mem_trans: Membrane t 21.4 4.4E+02 0.0095 27.3 8.7 53 274-327 244-296 (385)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-85 Score=679.53 Aligned_cols=513 Identities=47% Similarity=0.738 Sum_probs=446.3
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhhcCCCCc---cccccChhHHHHHhhH
Q 009116 17 SSDHKSVVSMNLFVALLCACIVIGHLLEENR--WMNESITALIIGLCTGIVILLTTNGTSS---HVLMFSEDLFFIYLLP 91 (543)
Q Consensus 17 ~~~~~~~~~i~l~~~ll~~~~~~~~~l~~~~--~lp~~~~~ll~Gil~G~~~~~~~~~~~~---~~~~~~~~~~~~~~Lp 91 (543)
++||++.+++++++.+|++|++.+|+++++| |+||++..+++|+++|.++++..+++.+ +...++||.|+.++||
T Consensus 28 ~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLP 107 (575)
T KOG1965|consen 28 EQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLP 107 (575)
T ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhc
Confidence 7899999999999999999999999999765 8999999999999999999988887777 7789999999999999
Q ss_pred HHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhccc
Q 009116 92 PIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD 171 (543)
Q Consensus 92 ~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~ 171 (543)
||+|++||++++++|+||+++|+.++++|+++++.++|.++|++..+....+++|.+|+++||++||||||+|+++++|+
T Consensus 108 piif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel 187 (575)
T KOG1965|consen 108 PIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNEL 187 (575)
T ss_pred hhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987554445589999999999999999999999999999
Q ss_pred CC-chhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009116 172 ET-PLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHST 250 (543)
Q Consensus 172 ~~-~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~ 250 (543)
++ |++|++++|||++|||++||+|+.++.+...+.+.....+.++.|++.+++|..+|++.|++.++++|+.+. |+.+
T Consensus 188 ~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l-~~~~ 266 (575)
T KOG1965|consen 188 GVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYL-RRTP 266 (575)
T ss_pred CCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 97 689999999999999999999999999988877766777899999999999999999999999999999987 5889
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccch
Q 009116 251 DREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEK 330 (543)
Q Consensus 251 ~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~ 330 (543)
..|..++++++|.+|++||.+|+|||+++++||++|+||+++|.++++|.++||+|+++++++|+++|.|+|+.+.+.++
T Consensus 267 ~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k 346 (575)
T KOG1965|consen 267 SLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQK 346 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCCCChhhHHHHHHhcccchhHHHHhhhhhhccCC
Q 009116 331 WRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSS-HEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSG 409 (543)
Q Consensus 331 w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~ 409 (543)
|.+. ...+.....++++++|++.+||++++.|..||.+ ..+++.|+|.++||+|.+|||+++|||.....+.+
T Consensus 347 ~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~ 420 (575)
T KOG1965|consen 347 HVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP 420 (575)
T ss_pred eeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence 7654 2345566677899999999999999999998754 55699999999999995599999999987644332
Q ss_pred CccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCcccccccCCC------------------CCCCcccccccc
Q 009116 410 HTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDE------------------SSTPKSFIVPLL 471 (543)
Q Consensus 410 ~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~l 471 (543)
++ .+++++++|+.+|++|+++.|.++.|+++++.++.++..... ++ .+.+++.+.+..
T Consensus 421 ~~---~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~i~~~ 496 (575)
T KOG1965|consen 421 HT---GGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAADEV-DESWRLEPGVEFYLVTKLGVLSLTSSAYITIL 496 (575)
T ss_pred cc---cccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccccc-chhhhccccccccccccccccccccccCcchh
Confidence 21 468999999999999999999999999999998776543211 00 001111122111
Q ss_pred CCC--CCCCCCCCCCCCCCchhhhhhhcCCcchhhhhHHHhhhcccccccCCCCCCcCCCCCCCcccchhh
Q 009116 472 GNG--QGSEADLKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPLEQSVHQW 540 (543)
Q Consensus 472 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~fd~~~~~p~f~~~~~~~~~~~~~~~~~~~~~ 540 (543)
... +..+|+...++.++..+.|....++++..|.+||++|+..+++.+++||.+|..|.+|.++..+..
T Consensus 497 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (575)
T KOG1965|consen 497 QLRQAELFDEPTRSSDSRFLLSLGFFQLTYTSLTHLYGRIFSRTSMRHIFGQRGLVPLKPNPPIRKLPNLS 567 (575)
T ss_pred hhhhhhhccccCCccCccccccccceeeeecccccccccccCcchhcccccccCcccCCCCcccccCCccc
Confidence 111 111233333345566778888899999999999999999999999999999999999998765443
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=2.5e-70 Score=592.82 Aligned_cols=459 Identities=28% Similarity=0.449 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCC
Q 009116 24 VSMNLFVALLCACIVIGHLLEEN-RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK 102 (543)
Q Consensus 24 ~~i~l~~~ll~~~~~~~~~l~~~-~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~ 102 (543)
..+.+++.+.+++.+.-|+.+|+ +++|+++.++++|+++|++...... .+...+++++|+.++||||+|++|+++|
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~---~~~~~l~~~lf~~~~LPpIlFe~g~~l~ 85 (559)
T TIGR00840 9 YEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH---IDPPTLDSSYFFLYLLPPIVLDAGYFMP 85 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC---CccCCcCHHHHHHHHHHHHHHHHHhcCC
Confidence 45666666777777776777664 4799999999999999987654432 1235789999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCHHHHHHHhccccCCCHHHHHHhhcccCCc-hhHHH
Q 009116 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMN--IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSL 179 (543)
Q Consensus 103 ~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~--~~~l~~~~alllGailsaTDpv~v~~il~~~~~~-~l~~l 179 (543)
++.|++|+++|+.+|++|++++++++|..+|++.+..+ ..+++|.+|+++||++|||||+++++++++.+.| +++++
T Consensus 86 ~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~l 165 (559)
T TIGR00840 86 QRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYII 165 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhh
Confidence 99999999999999999999999999999987655332 2367999999999999999999999999999877 79999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhh---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 009116 180 VFGEGVVNDATSVVLFNAIQSFDL---SHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVAL 256 (543)
Q Consensus 180 l~gEs~lND~~aivlf~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l 256 (543)
++|||++||++++++|..+.++.. ++.+..+....+..++...+||+++|+++|++.++++|+. ++.+..+..+
T Consensus 166 l~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~---~~~~~~e~~l 242 (559)
T TIGR00840 166 IFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFT---HHIRQIEPLF 242 (559)
T ss_pred eehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccchhHHHH
Confidence 999999999999999999888764 2333344555667777788899999999999999999987 3344678899
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhccccccc-chhhhcc
Q 009116 257 MILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI-EKWRVVR 335 (543)
Q Consensus 257 ~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~-~~w~~~~ 335 (543)
+++++|++|.+||.+|.||++|+++||++++||...|.+++++...+++|+.+++++|+++|+++|+++... ..|+
T Consensus 243 ~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~--- 319 (559)
T TIGR00840 243 VFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWN--- 319 (559)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH---
Confidence 999999999999999999999999999999999988999999999999999999999999999999987543 2332
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchh
Q 009116 336 DSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHG 415 (543)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~ 415 (543)
+...++.+++++++|++++++++++.|..+ +.++++|||++++|+| +||++++++|+... ....+.
T Consensus 320 ------~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~---~~~~~~~e~~il~w~G-lRGaVa~aLAl~l~----~~~~~~ 385 (559)
T TIGR00840 320 ------WAFVVATLSFCVIYRVLGVRTLSWITNEFR---PVEIPYKDQLVIFYAG-LRGAVAFALALLLD----EKIFPY 385 (559)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCChhhhhheeeec-cccHHHHHHHHhCC----CCCcch
Confidence 223345567789999999999999888765 4689999999999999 59999999998652 124578
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCcccccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCchhhhhh
Q 009116 416 NAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIVPLLGNGQGSEADLKTPNVTRPTSLRML 495 (543)
Q Consensus 416 ~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 495 (543)
++.++++|+.+|++|+++||.+++|++++++.++++++ +++..|+.|++.+++...+.||.+++
T Consensus 386 ~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~~~~~~-----~~~~~e~~~~~~~~~~~~~ie~~~g~----------- 449 (559)
T TIGR00840 386 KFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCIS-----KTKINEELHDREFDHLLPGIEDICGQ----------- 449 (559)
T ss_pred HHHHHHHHHeeehHHHHHHHhhHHHHHHHhCCCCCccc-----hhhHHHHHHHHHHHHHHhHHHHHhhh-----------
Confidence 89999999999999999999999999999999776532 34566789999999998888888876
Q ss_pred hcCCcchhhhhHHHhhhcccccccCCCC
Q 009116 496 LATPSHTVHHYWRKFDDAFMRPVFGGRG 523 (543)
Q Consensus 496 ~~~~~~~~~~~w~~fd~~~~~p~f~~~~ 523 (543)
.++++.++.|++||+||+||++.++.
T Consensus 450 --~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (559)
T TIGR00840 450 --IGHDRAIDKLNGFDIKYLLKPLIRRN 475 (559)
T ss_pred --cchHHHHHHHHHHhhhhChHhhcCCc
Confidence 45688899999999999999999953
No 3
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-72 Score=581.59 Aligned_cols=456 Identities=28% Similarity=0.499 Sum_probs=400.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCH
Q 009116 25 SMNLFVALLCACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK 103 (543)
Q Consensus 25 ~i~l~~~ll~~~~~~~~~l~~-~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~ 103 (543)
.+.+++++..++.+.=|+..+ +..+||++.++++|+++|.++....... ...++++.||.++||||+++|||.|+.
T Consensus 43 vi~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFlyLLPPIvlDAGYfMp~ 119 (670)
T KOG1966|consen 43 VITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLYLLPPIVLDAGYFMPN 119 (670)
T ss_pred hhHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhhhcCHHHhcccccCcc
Confidence 455666677778887788866 4559999999999999999988765433 245678999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--CCHHHHHHHhccccCCCHHHHHHhhcccC-CchhHHHH
Q 009116 104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGT--LKIGDYLAIGAIFAATDSVCTLQVLNQDE-TPLLYSLV 180 (543)
Q Consensus 104 ~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~--l~~~~alllGailsaTDpv~v~~il~~~~-~~~l~~ll 180 (543)
|.|+.|+++|+++|++||+++++.+|...|.+. ..|+-+ .+..+-|+||+++||.|||+|+++++|.+ ++.|+.++
T Consensus 120 r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~-~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~V 198 (670)
T KOG1966|consen 120 RAFFENLGTILLFAVVGTIWNAFTIGASLYAIS-LSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIV 198 (670)
T ss_pred HHHHhccchhhhHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeee
Confidence 999999999999999999999999988877653 333323 67999999999999999999999999986 45799999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 009116 181 FGEGVVNDATSVVLFNAIQSFDLS---HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALM 257 (543)
Q Consensus 181 ~gEs~lND~~aivlf~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~ 257 (543)
+|||++|||+.+|+|+.+.++..- +..+.+....+.+|+...+||+++|+++|.+.++.+|.. ++.+..|+.+.
T Consensus 199 FGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft---~~vrviePvfi 275 (670)
T KOG1966|consen 199 FGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT---KHVRVLEPVFI 275 (670)
T ss_pred ehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh---cceeeecchhh
Confidence 999999999999999999988653 444555556678899999999999999999999999976 67888999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccc-hhhhccC
Q 009116 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIE-KWRVVRD 336 (543)
Q Consensus 258 l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~-~w~~~~~ 336 (543)
+.++|++|..||.+|+|||+|+.+||+.|++|...|+++++..+.+++.++++..+|+++|+++|.++.... +|++
T Consensus 276 f~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~--- 352 (670)
T KOG1966|consen 276 FLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDF--- 352 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeeh---
Confidence 999999999999999999999999999999999999999999999999999999999999999999987653 4543
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhh
Q 009116 337 SPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGN 416 (543)
Q Consensus 337 ~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~ 416 (543)
.+..+.++.|++.|+++++..+++.|.+| ..+++.++|++|+++|| |||++++|..... + ...|.+
T Consensus 353 ------~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr---~~k~~~~DQfimsyGGL-RGAiaF~LV~lid---~-~~vp~K 418 (670)
T KOG1966|consen 353 ------AFICLTLVFCLIYRAIGVVVLTWFLNKFR---MVKLEFVDQFIMSYGGL-RGAIAFGLVVLID---G-AKVPAK 418 (670)
T ss_pred ------hhhhhHHHHHHHHHHHHhhhhhhhhhhhh---eeeccccceeeeecCCc-chhhheeEEEEec---c-ccCCcc
Confidence 35566778899999999999999999887 46999999999999998 9999999987652 2 457899
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCcccccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCchhhhhhh
Q 009116 417 AIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIVPLLGNGQGSEADLKTPNVTRPTSLRMLL 496 (543)
Q Consensus 417 ~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (543)
+.++++|++||+||+++||+|++|++++|+.|+++.. +++..|+++.+.+++...+.||++|+
T Consensus 419 ~~Fvttti~VIfFTVflQGiTIkplvk~L~Vk~~~~~-----~~~m~e~i~~~~~dhlm~gIEDi~G~------------ 481 (670)
T KOG1966|consen 419 NMFVTTTIAVIFFTVFLQGITIKPLVKFLKVKRKNKR-----DPTMNEEIYNRLLDHLMAGIEDIAGQ------------ 481 (670)
T ss_pred cceEeeeeEEEeeeeeecccchHHHHHHHcccccccc-----CchhhHHHHHHHHHHHHHHHHHHhcc------------
Confidence 9999999999999999999999999999999876542 45667899999999999999999875
Q ss_pred cCCcchhhhhHHHhhhcccccccCCC
Q 009116 497 ATPSHTVHHYWRKFDDAFMRPVFGGR 522 (543)
Q Consensus 497 ~~~~~~~~~~w~~fd~~~~~p~f~~~ 522 (543)
+++++.++.|++||+||+||++.++
T Consensus 482 -~gh~~~rdk~~~fn~kylrp~L~r~ 506 (670)
T KOG1966|consen 482 -KGHYYWRDKFERFNNKYLRPLLMRH 506 (670)
T ss_pred -cccchhhhhHHHHHhhhchHHHhhh
Confidence 4678999999999999999999997
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=3.9e-53 Score=459.02 Aligned_cols=395 Identities=21% Similarity=0.354 Sum_probs=317.8
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHH
Q 009116 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM 114 (543)
Q Consensus 35 ~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il 114 (543)
++...+..+.++.++|.+++++++|+++|+..... ...++++.++.++||+++|++|+++|++++|||+++++
T Consensus 8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~ 80 (525)
T TIGR00831 8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-------EVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIA 80 (525)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33344445555577999999999999999753311 14578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCCc-hhHHHHHHHHhhhhHHHHH
Q 009116 115 LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVVNDATSVV 193 (543)
Q Consensus 115 ~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~~-~l~~ll~gEs~lND~~aiv 193 (543)
.+++++++++++++++.++++. ++||..|+++||++|||||+++.+++++.+.| ++.++++|||++||+++++
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alv 154 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALV 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHH
Confidence 9999999999999998888754 89999999999999999999999999999988 7999999999999999999
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 009116 194 LFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYL 273 (543)
Q Consensus 194 lf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~ 273 (543)
+|.+......++. ..+....+..|++.+++|+++|+++|++..++.|+. .+++..+..++++++|++|.+||.+|.
T Consensus 155 lf~~~~~~~~~~~-~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~ 230 (525)
T TIGR00831 155 VFAIAVAVALGKG-VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHF 230 (525)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9998887765311 123344577888899999999999999999887653 345556788999999999999999999
Q ss_pred chhHHHHHHHHHhcccccc-ccccchhHHHHHHHHHHHHHHhHHHHHhhccccccc--chhhhccCCCCc-hH---HHHH
Q 009116 274 SGILTVFFCGIVMSHYTWH-NVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI--EKWRVVRDSPGK-SV---GVSA 346 (543)
Q Consensus 274 SGilav~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~--~~w~~~~~~~~~-~~---~~~~ 346 (543)
||++|+++||++++|+..+ +.+++.+...+++|+.+++++|+++|+++|++++.. +.|+........ .+ ....
T Consensus 231 SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (525)
T TIGR00831 231 SGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAF 310 (525)
T ss_pred CHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999998876 677778888999999999999999999999998652 223211000000 01 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhcc-CCCccchhhHHHHHHHHH
Q 009116 347 ILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTS-SGHTKLHGNAIMITSTIT 425 (543)
Q Consensus 347 ~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~-~~~~~~~~~~~i~~~t~~ 425 (543)
++...+...|+++++. ...+...++++.+.+||++++++|+| |||++++++|+..+.. ....+.|.++.++..++.
T Consensus 311 ~i~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~r~~~v~~w~G-~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~ 387 (525)
T TIGR00831 311 VIYPVMTYVRFLWTMK--PFSNRFLKKKPMEFGTRWKHVVSWAG-LRGAIPLALALSFPNQLLSGMAFPARYELVFLAAG 387 (525)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhhcccCCCChhhHHHheecc-chHHHHHHHHHHccccccCCCCCchHHHHHHHHHH
Confidence 3334455677655443 33444444445678999999999999 6999999999876432 122457889999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHhCCCC
Q 009116 426 VVLFSTVVFGLMTQPLVRILLPSS 449 (543)
Q Consensus 426 vVl~T~~v~g~~~~~l~~~l~~~~ 449 (543)
+|++|+++||.++||++|+++..+
T Consensus 388 vVl~TllvqG~tlp~l~r~l~~~~ 411 (525)
T TIGR00831 388 VILFSLLVQGISLPIFVKRKFVSE 411 (525)
T ss_pred HHHHHHHHHHhhHHHHHHhcCCCC
Confidence 999999999999999999998754
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-51 Score=429.75 Aligned_cols=399 Identities=24% Similarity=0.334 Sum_probs=332.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHH
Q 009116 26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ 105 (543)
Q Consensus 26 i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~ 105 (543)
++....++..+...+.+.+| ..+|+...+++.|++.|+........ ...+++|.+..+++||++|++|+++|+++
T Consensus 8 ~~~~~lil~l~~~~~~~~~~-l~~~~i~~~ll~g~i~g~~~l~~~~~----~~~~~~el~~~l~l~ilLf~~g~~l~~~~ 82 (429)
T COG0025 8 LFLLLLILLLGLLVSVLAGR-LLLPEIPLLLLLGLLGGPPGLNLISP----DLELDPELFLVLFLAILLFAGGLELDLRE 82 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhhhhhccccc----cccCChHHHHHHHHHHHHHHhHhcCCHHH
Confidence 33344444555555555555 56999999999999999876654322 14668888999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCCc-hhHHHHHHHH
Q 009116 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEG 184 (543)
Q Consensus 106 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~~-~l~~ll~gEs 184 (543)
+||+++++..+++++++++++.+|...|++++ ++++..|+++||++|||||+++.+++++.+.| |+.++++|||
T Consensus 83 l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gES 157 (429)
T COG0025 83 LRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGES 157 (429)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999875 78999999999999999999999999999988 8999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Q 009116 185 VVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGR-HSTDREVALMILMAYL 263 (543)
Q Consensus 185 ~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~-~~~~~~~~l~l~~~~l 263 (543)
++||++++++|.+......++.+. +.......+++...+|+++|++.|++..++.|+....+ .++..+..+.+..++.
T Consensus 158 l~ND~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~ 236 (429)
T COG0025 158 LLNDGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFA 236 (429)
T ss_pred HhhhHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 999999999999888876642221 14566889999999999999999999999999986421 1234678899999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhcccccccccc-chhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchH
Q 009116 264 SYMLAELFYLSGILTVFFCGIVMSHYTWHNVTE-SSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSV 342 (543)
Q Consensus 264 ~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~ 342 (543)
+|.+||.+|.||++|++++|++++++...+.++ +.|.+.+++|+.+++++|.++|+++|.+++....+.. .+
T Consensus 237 ~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-------~~ 309 (429)
T COG0025 237 AYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-------GL 309 (429)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-------hH
Confidence 999999999999999999999998554445554 4488899999999999999999999999976543221 14
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHHH
Q 009116 343 GVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITS 422 (543)
Q Consensus 343 ~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~ 422 (543)
....++...++++|++++++..+..+ ++.++..+|||+.+++|+| |||++++++|...+.... . +.++.+...
T Consensus 310 ~~~l~~~~~~~v~R~~~V~~~~~~~~---~~~~~~~~~~~~~~l~w~G-~RG~vsla~al~~p~~~~--~-~~~~~i~~i 382 (429)
T COG0025 310 LGLLVALVAVLLARPLWVFLSLKGSN---LKLRDPLPWRERLFLSWAG-PRGVVSLALALLIPLELP--G-PARELILFI 382 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc---ccccCCCCHHHHHHHhhcc-cccHHHHHHHHHchhhcc--c-hhhhHHHHH
Confidence 45566677899999999998877654 2235678999999999999 799999999987653222 1 678999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhCCCC
Q 009116 423 TITVVLFSTVVFGLMTQPLVRILLPSS 449 (543)
Q Consensus 423 t~~vVl~T~~v~g~~~~~l~~~l~~~~ 449 (543)
++.+|++|+++||.++||+.+++...+
T Consensus 383 ~~~vIl~Sl~v~g~t~~~l~~~~~~~~ 409 (429)
T COG0025 383 VFLVILFSLLVQGLTLPPLAKKLEVSE 409 (429)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCc
Confidence 999999999999999999999988744
No 6
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=1.3e-44 Score=394.06 Aligned_cols=398 Identities=17% Similarity=0.160 Sum_probs=303.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhH---HHHHhhHHHhHHhh
Q 009116 22 SVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL---FFIYLLPPIIFNAG 98 (543)
Q Consensus 22 ~~~~i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~---~~~~~Lp~IlF~aG 98 (543)
....+..+..++++..+++.+++++.++|+++.++++|+++||......+... ...+..+ +.++.|++++|.+|
T Consensus 11 ~~l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~leIteIvL~I~LFa~G 87 (810)
T TIGR00844 11 AHVAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLEISRILLCLQVFAVS 87 (810)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHHHHHHHHHHHHHHHH
Confidence 34455666677778888999999888899999999999999998765433211 1111222 66789999999999
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcc---cCCc-
Q 009116 99 FQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQ---DETP- 174 (543)
Q Consensus 99 ~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~---~~~~- 174 (543)
++++++.++++|+.+..++++++.++++++++++|++++ +++|..|+++|||++||||+++.++++. .+.|
T Consensus 88 l~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~ 162 (810)
T TIGR00844 88 VELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPG 162 (810)
T ss_pred HhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCCh
Confidence 999999999999999999999999999999999988754 8999999999999999999999999983 4566
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHhhhc-cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-
Q 009116 175 LLYSLVFGEGVVNDATSVVLFNAIQSFDLS-HI-NLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTD- 251 (543)
Q Consensus 175 ~l~~ll~gEs~lND~~aivlf~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~- 251 (543)
++++++.+||++||++|++++.+...+... +. ......+.+..+++.+++|+++|+++|++.++++++... ++..+
T Consensus 163 rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~r-r~~i~~ 241 (810)
T TIGR00844 163 HLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEG-KNIIDR 241 (810)
T ss_pred HHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccch
Confidence 799999999999999999887766554421 11 111122346789999999999999999999999998752 33222
Q ss_pred -hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccch
Q 009116 252 -REVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEK 330 (543)
Q Consensus 252 -~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~ 330 (543)
....+.+.+++.+|.+|+.+|.||++|+|+||++++|..+. ..+.....+++.+..+++.++|+++|+.++....
T Consensus 242 esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~----~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l 317 (810)
T TIGR00844 242 ESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF----AQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDF 317 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch----hhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhc
Confidence 33556788899999999999999999999999999987642 1122345699999999999999999999854321
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCC-
Q 009116 331 WRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSG- 409 (543)
Q Consensus 331 w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~- 409 (543)
.+.. .....+...++.++++++.|+..++.+..+. +...+|||+++++|.| |||++++..+.....+..
T Consensus 318 ~~~~--l~~~~w~~ilLaL~LifVrRPpaVlll~~li-------~~~~s~rErlFigWFG-pRGIGSIyyl~~A~~~~~~ 387 (810)
T TIGR00844 318 NNGD--IGLDVWRLIILSLVVIFLRRIPAVLILKPLI-------PDIKSWREAMFIGHFG-PIGVGAVFAAILSKSQLES 387 (810)
T ss_pred ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccCCCHHHHHHheeec-cccHHHHHHHHHHHHhhhc
Confidence 0000 0011233445556677899988887543322 2457999999999999 799999986544322111
Q ss_pred -Ccc---------------chhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 009116 410 -HTK---------------LHGNAIMITSTITVVLFSTVVFGLMTQPLV 442 (543)
Q Consensus 410 -~~~---------------~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~ 442 (543)
... ....+.+..+|.++|+.|+++||++++|+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~ 436 (810)
T TIGR00844 388 HLTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIM 436 (810)
T ss_pred ccCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 000 012467889999999999999999999984
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=4.5e-45 Score=401.05 Aligned_cols=384 Identities=22% Similarity=0.234 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHH
Q 009116 29 FVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFR 108 (543)
Q Consensus 29 ~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~ 108 (543)
+..+++++.+.+.+.+| .++|..++++++|+++|+...+..+..+. + ..+.+..+++++|+|++|+++|++.+|+
T Consensus 11 ~~~ll~l~~~~~~l~~r-~~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 11 GALLLLLSILASRLSSR-LGIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 33455555555555555 67999999999999999865543211111 1 1245789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccC--Cc-hhHHHHHHHHh
Q 009116 109 NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TP-LLYSLVFGEGV 185 (543)
Q Consensus 109 ~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~--~~-~l~~ll~gEs~ 185 (543)
++++++.+++.|+++++++++..+++++ +++|..|+++|+++++|||+++.+++++.+ .+ ++.+++++||+
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~ 159 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESG 159 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhh
Confidence 9999999999999999998888888777 899999999999999999999999999987 66 89999999999
Q ss_pred hhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 009116 186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSY 265 (543)
Q Consensus 186 lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y 265 (543)
+||+++++++.++..+..++.+..+ +..+..++.++.+++++|+++|++..+++|+.. .+..+....+++++++++|
T Consensus 160 ~nD~~ai~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~~~l~~~ 236 (562)
T PRK05326 160 SNDPMAVFLTITLIELITGGETGLS-WGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLAGALLIF 236 (562)
T ss_pred cccHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHHH
Confidence 9999999999988776544322111 233667888899999999999999999988762 1233456778899999999
Q ss_pred HHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchHHHH
Q 009116 266 MLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVS 345 (543)
Q Consensus 266 ~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~~~~ 345 (543)
.+||.+|.||++|+|++|++++|.. ...+...+++++.+++++++++|+++|+.++.....+. .+...
T Consensus 237 ~~a~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-------~~~~l 304 (562)
T PRK05326 237 ALTAALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-------ALPAL 304 (562)
T ss_pred HHHHHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHH
Confidence 9999999999999999999999754 23445688899999999999999999999855332111 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHHHHHH
Q 009116 346 AILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTIT 425 (543)
Q Consensus 346 ~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t~~ 425 (543)
.+.+++++++|+++++.... ..++++||+.+++|+| +||++++++|..... .+ .+..+.++.+++.
T Consensus 305 ~i~~~l~~vaR~l~v~l~~~---------~~~~~~~e~~~i~~~g-~RG~v~i~lA~~~~~-~~---~~~~~~~~~~~~~ 370 (562)
T PRK05326 305 LLALFLILVARPLAVFLSLL---------PFRFNLREKLFISWVG-LRGAVPIVLATFPMM-AG---LPNAQLIFNVVFF 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHc---------cCCCCHhhhheeeeec-chhHHHHHHHHHHHH-cC---CCchhhhhhhhhe
Confidence 23345678999999886542 3488999999999999 699999999976532 22 3456778899999
Q ss_pred HHHHHHhhhhhhHHHHHHHhCCCCccc
Q 009116 426 VVLFSTVVFGLMTQPLVRILLPSSKNL 452 (543)
Q Consensus 426 vVl~T~~v~g~~~~~l~~~l~~~~~~~ 452 (543)
+|++|+++||.+++|+.|+++.+++++
T Consensus 371 vvl~S~~i~g~tl~~~a~~l~l~~~~~ 397 (562)
T PRK05326 371 VVLVSLLLQGTTLPWAARKLGVVVPPE 397 (562)
T ss_pred eeHHHHHHHHhhHHHHHHHcCCCCCCC
Confidence 999999999999999999999876544
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-43 Score=348.78 Aligned_cols=388 Identities=21% Similarity=0.229 Sum_probs=317.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHH
Q 009116 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK 104 (543)
Q Consensus 25 ~i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~ 104 (543)
.+++...+++...++...+..+..+|--...+.+|++.|.=..+..+..+.+ + ......++|.+|+|++|+..+.+
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~---~-Ay~vg~lALaiILfdgG~~T~ls 82 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYP---F-AYMVGNLALAIILFDGGFGTQLS 82 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccH---H-HHHHHHHHHHHHhhcCccCCcHH
Confidence 3444444444444455545444679999999999999985433322211111 1 13356889999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCCc-hhHHHHHHH
Q 009116 105 QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGE 183 (543)
Q Consensus 105 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~~-~l~~ll~gE 183 (543)
.+|...++.+.+|.+|++++..+.|..++|++ +++|.+++++||++.+||.++|.+++++.+.. |+.++++-|
T Consensus 83 s~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~stLEiE 156 (574)
T COG3263 83 SFRVAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIE 156 (574)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhhEEee
Confidence 99999999999999999999999999999998 99999999999999999999999999888755 899999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 009116 184 GVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYL 263 (543)
Q Consensus 184 s~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l 263 (543)
|+-||.+|+++.-.+..+..++.++.+... +..|+.++..|+++|...|++..++++|.. -+....+.+.+...++
T Consensus 157 SGtNDPmAvfLTitlieli~~get~l~~~~-ll~f~~q~glG~l~G~~gg~l~~~~Inr~n---Ld~GL~pil~la~~Ll 232 (574)
T COG3263 157 SGSNDPMAVFLTITLIELIAGGETNLSWGF-LLGFLQQFGLGLLLGLGGGKLLLQLINRIN---LDSGLYPILALAGGLL 232 (574)
T ss_pred cCCCCceeeehhHHHHHHHhccccccCHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---cccchhHHHHHHHHHH
Confidence 999999999999888877665433333333 344899999999999999999999999873 3345668899999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchHH
Q 009116 264 SYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVG 343 (543)
Q Consensus 264 ~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~~ 343 (543)
.|.+++.+|.||++|++.||++.+|. +-+.|+.+.++++.++++++..+|..+|+.+.+.+.|... +.
T Consensus 233 ~fs~t~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~ia-------vP 300 (574)
T COG3263 233 IFSLTGAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIA-------IP 300 (574)
T ss_pred HHHHHHHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhh-------HH
Confidence 99999999999999999999999964 3467888999999999999999999999999887777642 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHHHH
Q 009116 344 VSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITST 423 (543)
Q Consensus 344 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t 423 (543)
...+.+..++++|++.||... . +.++++||+.+++|.|+ |||+++.+|..+.. .| .+..+.++...
T Consensus 301 ailL~l~mifvaRP~aV~l~l-----~----Pfrf~~~Ek~fvSWvGL-RGAv~IilAifpm~-ag---lena~l~FNvA 366 (574)
T COG3263 301 AILLSLWMIFVARPLAVFLGL-----I----PFRFNRREKLFVSWVGL-RGAVPIILAIFPMM-AG---LENARLFFNVA 366 (574)
T ss_pred HHHHHHHHHHHHhHHHHHHhh-----c----ccccCccchheeehhhc-ccchhhhHhhhHHh-cC---CccceEEeehh
Confidence 445556778999999998642 1 34799999999999998 99999999977643 23 45677889999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhCCCCccc
Q 009116 424 ITVVLFSTVVFGLMTQPLVRILLPSSKNL 452 (543)
Q Consensus 424 ~~vVl~T~~v~g~~~~~l~~~l~~~~~~~ 452 (543)
+++|+.|.++||.+.++..|+++....++
T Consensus 367 F~VVLvSlliQG~tl~~~a~~l~~i~p~~ 395 (574)
T COG3263 367 FFVVLVSLLIQGSTLPWAAKKLKVIVPPR 395 (574)
T ss_pred HHHHHHHHHHccCcchHHHHhcccccCCC
Confidence 99999999999999999999998765443
No 9
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-33 Score=270.06 Aligned_cols=384 Identities=17% Similarity=0.180 Sum_probs=291.4
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHH
Q 009116 37 IVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLF 116 (543)
Q Consensus 37 ~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~l 116 (543)
.+.+.+++++..+.|+...-+.|+++||..+...++.....-+.-...+..+.|..-+|.++.|++++++.++|+++..+
T Consensus 26 ~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vl 105 (467)
T KOG4505|consen 26 GLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVL 105 (467)
T ss_pred HHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35678888888899999999999999999987765443221112223377899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhccc----CCc-hhHHHHHHHHhhhhHHH
Q 009116 117 GAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD----ETP-LLYSLVFGEGVVNDATS 191 (543)
Q Consensus 117 a~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~----~~~-~l~~ll~gEs~lND~~a 191 (543)
-.+-+++-+++.+..+|.++| ++++..+++++++++||||+...++..+. +.| |+++++.+||+.||++|
T Consensus 106 llpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMa 180 (467)
T KOG4505|consen 106 LLPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMA 180 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcc
Confidence 988888888888888888876 89999999999999999999999999754 377 89999999999999999
Q ss_pred HHHHHHHHHhhhcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH--HHHHHHHHHHHHH
Q 009116 192 VVLFNAIQSFDLSHIN-LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVA--LMILMAYLSYMLA 268 (543)
Q Consensus 192 ivlf~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~--l~l~~~~l~y~~A 268 (543)
+..+-....+..+... ...--++....++....|+++|.++|++....+|+.+. ++..+.|.. +-+.+++++..+.
T Consensus 181 ipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aek-krlid~eSfl~~~vvl~lfc~gig 259 (467)
T KOG4505|consen 181 IPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEK-KRLIDRESFLIFYVVLALFCMGIG 259 (467)
T ss_pred hhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhhhh
Confidence 9766655554433211 00011346778999999999999999999999999865 555666654 5567888999999
Q ss_pred HHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccc-hhhhccCCCCchHHHHHH
Q 009116 269 ELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIE-KWRVVRDSPGKSVGVSAI 347 (543)
Q Consensus 269 e~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~-~w~~~~~~~~~~~~~~~~ 347 (543)
+.+|.+.++..|++|+++++..|... +....+.-+.+..+++..+|+|.|..++..+ +|. ..+...|..++
T Consensus 260 tiiGvddLl~sFfAGi~Fswd~wFsk----~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s----~~gl~vwrlvi 331 (467)
T KOG4505|consen 260 TIIGVDDLLVSFFAGIVFSWDEWFSK----KTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLS----VEGLPVWRLVI 331 (467)
T ss_pred heechhHHHHHHHhhhhcchhHHhhh----hhhhccHHHHHHHHHHHHHHHHhccccchhhcCCc----ccCchHHHHHH
Confidence 99999999999999999998876422 2223345667788999999999999997644 222 23334444444
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCc------------cch
Q 009116 348 LL-GLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHT------------KLH 414 (543)
Q Consensus 348 ~~-~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~------------~~~ 414 (543)
+. ..+++-|+..++....+. +.-.+|||++++||.| |.|..++..|+..-.....+ .-.
T Consensus 332 lsi~iif~RRip~v~l~kp~i-------PdikswkEALFvGhFG-PIGVgAly~allar~~le~~ep~~~i~~~e~~~w~ 403 (467)
T KOG4505|consen 332 LSITIIFIRRIPAVYLMKPLI-------PDIKSWKEALFVGHFG-PIGVGALYYALLARKELETLEPEKSIYESETVFWT 403 (467)
T ss_pred HHHHHHHhcccceEEEeccCC-------cchhhHHHHHHhccCC-CccHHHHHHHHHHHhhhccCCcccccCCccccchh
Confidence 33 344455665665443332 4567999999999999 99999998776531110000 011
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 009116 415 GNAIMITSTITVVLFSTVVFGLMTQPLV 442 (543)
Q Consensus 415 ~~~~i~~~t~~vVl~T~~v~g~~~~~l~ 442 (543)
..+.+...+..+|+.|+++||.+++.+.
T Consensus 404 li~~iwpivsf~vlsSIiVHG~sv~~~t 431 (467)
T KOG4505|consen 404 LIEIIWPIVSFTVLSSIIVHGSSVAMYT 431 (467)
T ss_pred hhhhhhhhhHHHHHHHHHhccchhhHHH
Confidence 2356888899999999999999987653
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=2.9e-35 Score=309.49 Aligned_cols=372 Identities=26% Similarity=0.347 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHH
Q 009116 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM 114 (543)
Q Consensus 35 ~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il 114 (543)
.+.+.+.+++ +.++|+.++++++|+++|+......++. ....+.+.++++++++|++|+|+|.+++||++++.+
T Consensus 7 ~~~~~~~l~~-r~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~ 80 (380)
T PF00999_consen 7 LAFVAGILFR-RLGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRAL 80 (380)
T ss_dssp -----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----------
T ss_pred hHHHHHHHHH-HhCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 3444445544 4669999999999999999876633221 123355788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhccc-CCc-hhHHHHHHHHhhhhHHHH
Q 009116 115 LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD-ETP-LLYSLVFGEGVVNDATSV 192 (543)
Q Consensus 115 ~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~-~~~-~l~~ll~gEs~lND~~ai 192 (543)
..++.++++++..++..+++++ ...++++.+++++|+++++|||+.+.++++|. +.+ ++.+++.+|+++||..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i 157 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAI 157 (380)
T ss_dssp ------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTT
T ss_pred ccccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchh
Confidence 9999999999887677766421 01189999999999999999999999999664 445 899999999999999999
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q 009116 193 VLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFY 272 (543)
Q Consensus 193 vlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~ 272 (543)
+++.++...... ....+..+....++.....+.++|...+++..+..|+. ++.++.+...++++++..|+++|.+|
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g 233 (380)
T PF00999_consen 158 ILLSILISLAQA-SGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILG 233 (380)
T ss_dssp TTT-----------------------------------------------------------------------------
T ss_pred hhhhhhhhhhcc-cccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhcccccccc
Confidence 999988877622 12223344455555555555555555555444444432 24556778889999999999999999
Q ss_pred cchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchHHHHHHHHHHH
Q 009116 273 LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLV 352 (543)
Q Consensus 273 ~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 352 (543)
.|+++++|++|+++++...++ +.+++.+++++ .++++++|+++|+.++.....+ ....+....+..+.+
T Consensus 234 ~s~~l~af~~Gl~~~~~~~~~---~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~-----~~~~~~~~~~~~~~~ 302 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNSPFAE---RLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN-----SPSVIILVLLLLIAI 302 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehccccccccc---hhhhcccchhh---HHHhhHHhhhhccccccccccc-----chhhhhhHHHHHHHH
Confidence 999999999999999543221 12222333333 8999999999999996322100 012334445555667
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHHHHHHHHHHHHh
Q 009116 353 LLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTV 432 (543)
Q Consensus 353 ~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~ 432 (543)
+++|+++++..++. .+.++|++..+++++.|||.++++++...... + ...+.+.+.++.++++|++
T Consensus 303 ~~~k~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~-~----~~~~~~~~~~~~~vl~t~i 368 (380)
T PF00999_consen 303 LLGKFIGVYLASRL---------FGIPWKEALFIGLGMLPRGEVSLALALIALNL-G----IISEQMFTIIIAAVLLTII 368 (380)
T ss_dssp -----------------------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------
T ss_pred HHhhhceeehhhhh---------cccccchhHHHHHhhcCccHHHHHHHHHHHhc-C----CCCHHHHHHheeeeeeHHH
Confidence 78999888765432 38899999999999988999999998765432 1 1233448888899999999
Q ss_pred hhhhhHHHHHHH
Q 009116 433 VFGLMTQPLVRI 444 (543)
Q Consensus 433 v~g~~~~~l~~~ 444 (543)
++|++++|+++|
T Consensus 369 i~~~~~~~l~~~ 380 (380)
T PF00999_consen 369 IAGIILSPLLRK 380 (380)
T ss_dssp ------------
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.96 E-value=1.3e-25 Score=248.50 Aligned_cols=361 Identities=16% Similarity=0.077 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHH
Q 009116 29 FVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFR 108 (543)
Q Consensus 29 ~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~ 108 (543)
.++++.++.+.+.+++| .++|.+++++++|+++||..++..+. .+ +-+.+.++++.+++|..|+|+|++++|+
T Consensus 10 ~~~~l~~a~i~~~l~~r-l~lp~vlgyilaGillGP~~lg~i~~--~~----~i~~laelGvv~LlF~iGLEl~~~~l~~ 82 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVR-LGLGSVLGYLIAGCIIGPWGLRLVTD--VE----SILHFAEFGVVLMLFVIGLELDPQRLWK 82 (621)
T ss_pred HHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhCcccccCCCC--HH----HHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 34455555555666655 67999999999999999976554321 11 1134678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccC--CchhHHHHHHHHhh
Q 009116 109 NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TPLLYSLVFGEGVV 186 (543)
Q Consensus 109 ~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~--~~~l~~ll~gEs~l 186 (543)
.++.++.++...+++++.+++...+ ++ +++|..++++|++++.|+++.++++++|.+ ..+..+...+-.++
T Consensus 83 ~~~~~~~~g~~qv~~~~~~~~~~~~-~~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~ 155 (621)
T PRK03562 83 LRRSIFGGGALQMVACGGLLGLFCM-LL------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLF 155 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHH
Confidence 9999999999999988776655444 34 889999999999999999999999999976 33789999999999
Q ss_pred hhHHHHHHHHHHHHhhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 009116 187 NDATSVVLFNAIQSFDLSHIN--LSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILMAYL 263 (543)
Q Consensus 187 ND~~aivlf~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~s~~~G~~~G-~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l 263 (543)
||..+++++.++..+...+.+ ....+..+.. .++.+++.++.| ++...+.++... ++.++.....+++++++
T Consensus 156 ~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~lv~~ 230 (621)
T PRK03562 156 QDIAAIPLVAMIPLLAASGASTTLGAFALSALK----VAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALFLVFG 230 (621)
T ss_pred HHHHHHHHHHHHHHHccCCCccchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHH
Confidence 999999888876555432111 1111111111 112222223333 334445555432 34455556677788899
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchHH
Q 009116 264 SYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVG 343 (543)
Q Consensus 264 ~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~~ 343 (543)
+..++|.+|+|..+++|++|+++++. +.++..++..+.+..++.++||+.+|++++....++ .++
T Consensus 231 ~a~la~~~Gls~~lGAFlAGl~l~~~-------~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~--------~~~ 295 (621)
T PRK03562 231 FGLLMEEVGLSMALGAFLAGVLLASS-------EYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE--------NPL 295 (621)
T ss_pred HHHHHHHhCccHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH--------HHH
Confidence 99999999999999999999999953 224455556666667888999999999985422111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHHHH
Q 009116 344 VSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITST 423 (543)
Q Consensus 344 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t 423 (543)
..+.++++.+++|+++++..+.. .+.+++++..+|+..-+||..++.++.... +.+. ..+...+..
T Consensus 296 ~il~~~~~~~~~K~~~~~~~~~~---------~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~-~~~~----i~~~~~~~l 361 (621)
T PRK03562 296 RILILLLGFLAIKIAMLWLLARP---------LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQ-MANV----LEPEWAKLL 361 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------hCCCHhHHHHHHHHHhccccHHHHHHHHHH-HCCC----CCHHHHHHH
Confidence 22333445778898888866543 278999999999988779999988764321 1221 234445555
Q ss_pred HHHHHHHHhhhhhh
Q 009116 424 ITVVLFSTVVFGLM 437 (543)
Q Consensus 424 ~~vVl~T~~v~g~~ 437 (543)
+.++++|+++.+..
T Consensus 362 v~~v~lS~~~tP~l 375 (621)
T PRK03562 362 TLAVALSMAATPLL 375 (621)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777774443
No 12
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.4e-25 Score=232.67 Aligned_cols=378 Identities=18% Similarity=0.210 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHH
Q 009116 26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ 105 (543)
Q Consensus 26 i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~ 105 (543)
+..+..++..+.+.+.+++| .++|.++++++.|+++||....... ++++.. +.+.++++..++|.+|+|.|.++
T Consensus 8 l~~~~iiL~~a~i~~~l~~r-l~lp~vlg~llaGiilGp~~~~~~~-~~~~~i----~~laelGvi~LlF~~GLE~~~~~ 81 (397)
T COG0475 8 LLQLLILLLVAVILGPLFKR-LGLPPVLGYLLAGIILGPWGLLLII-ESSEII----ELLAELGVVFLLFLIGLEFDLER 81 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHhcCcccccccC-CchHHH----HHHHHHhHHHHHHHHHHCcCHHH
Confidence 44455667778888877666 5699999999999999993332221 111111 33668999999999999999999
Q ss_pred HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccC-Cc-hhHHHHHH
Q 009116 106 FFRNFMT-IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE-TP-LLYSLVFG 182 (543)
Q Consensus 106 f~~~~~~-il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~-~~-~l~~ll~g 182 (543)
+||+.++ ....+..+...++.......+..+ ++++..++++|++++.||...+.++++|.+ .+ +..+++.+
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~ 155 (397)
T COG0475 82 LKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILG 155 (397)
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999 666666665555333222222124 889999999999999999999999999975 33 79999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009116 183 EGVVNDATSVVLFNAIQSFDLSHINLSI-ALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMA 261 (543)
Q Consensus 183 Es~lND~~aivlf~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 261 (543)
..+++|..++.++.++..+..++..... +...+.............| -++..++.|+... .+.++.....++.+.
T Consensus 156 ~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g---~~l~~~~~r~~~~-~~~~e~~~~~~l~i~ 231 (397)
T COG0475 156 ALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG---RYLLPPLFRRVAK-TESSELFILFVLLLV 231 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh-ccchHHHHHHHHHHH
Confidence 9999999999999999888755322211 2222222222222222222 2555566666532 255566778899999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHH-HHhHHHHHhhcccccccchhhhccCCCCc
Q 009116 262 YLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSF-VAEIFIFLYVGMDALDIEKWRVVRDSPGK 340 (543)
Q Consensus 262 ~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~ 340 (543)
+...+++|.+|+|.++++|.+|++++.... .+++.++-.+.+.. ++-++||+.+|++++....++
T Consensus 232 l~~a~l~e~~gls~ilGAFlaGl~ls~~~~------~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~-------- 297 (397)
T COG0475 232 LGAAYLAELLGLSMILGAFLAGLLLSESEY------RKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE-------- 297 (397)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHhccccc------chHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--------
Confidence 999999999999999999999999995431 11456667777777 999999999999985433211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHH
Q 009116 341 SVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMI 420 (543)
Q Consensus 341 ~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~ 420 (543)
..........+..+.|.+..+...+.. +.++|++...++..-+||..+++++-... .....+..+
T Consensus 298 ~~~~~l~~~~~~i~~K~~~~~~~~~~~---------g~~~~~~~~~g~~~~~~ge~~~v~~~~~~------~~~i~~~~~ 362 (397)
T COG0475 298 NLLLILLLVALAILGKILGAYLAARLL---------GFSKRLALGIGLLLRQGGEFAFVLAGIAL------GSAISEALL 362 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCcHHHHHHHHhhhhhhhHHHHHHHHhcc------cchhHHHHH
Confidence 122244556677889998888765543 57778888888776556666665543211 123455566
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhCCC
Q 009116 421 TSTITVVLFSTVVFGLMTQPLVRILLPS 448 (543)
Q Consensus 421 ~~t~~vVl~T~~v~g~~~~~l~~~l~~~ 448 (543)
+.++.+.++++.+-...++++.++..++
T Consensus 363 ~~~v~~smi~t~i~~~~~~~~~~~~~~~ 390 (397)
T COG0475 363 TAVVILSMITTPILPLLTPILLKRLLKK 390 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6566666666666555566666655443
No 13
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.95 E-value=2.6e-25 Score=252.45 Aligned_cols=348 Identities=12% Similarity=0.110 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccC----hhHHHHHhhHHHhHHhhhcCCHHH
Q 009116 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFS----EDLFFIYLLPPIIFNAGFQVKKKQ 105 (543)
Q Consensus 30 ~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~----~~~~~~~~Lp~IlF~aG~~l~~~~ 105 (543)
.++++++.+++.+++| .++|..++++++|+++||..++..+......+..+ -+.+..+++..++|.+|+|+|.+.
T Consensus 49 ~lil~~a~l~~~ll~r-l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~ 127 (832)
T PLN03159 49 TLVVVTTRLLVFILKP-FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV 127 (832)
T ss_pred HHHHHHHHHHHHHHHh-cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 3455556666666655 66999999999999999987765432111111111 144778999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCC--chhHHHHHHH
Q 009116 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGE 183 (543)
Q Consensus 106 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~--~~l~~ll~gE 183 (543)
+||+.+..+..++.++++++++.....+++ ............++++|.++|.|+..++..+++|.+. .++.+++.+.
T Consensus 128 lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsa 206 (832)
T PLN03159 128 IRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSA 206 (832)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHH
Confidence 999999999999999999876544343333 2211101123456889999999999999999999873 4799999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 009116 184 GVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYL 263 (543)
Q Consensus 184 s~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l 263 (543)
+++||.++++++.++..+...+......... .+..++..+++.+++..+..|+.|+...+++..+....+++++.++
T Consensus 207 avv~Dl~~~ilLav~~~l~~~~~~~~~~l~~---~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~ 283 (832)
T PLN03159 207 ALVNDMCAWILLALAIALAENDSTSLASLWV---LLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMI 283 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHH
Confidence 9999999999988776665432221111111 1111111122223333444555555421122233445677777888
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchHH
Q 009116 264 SYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVG 343 (543)
Q Consensus 264 ~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~~ 343 (543)
+.+++|.+|+|.++++|++|+++.+. +..+...+++-.....++-+++|+++|+.++....+ ....+.
T Consensus 284 ~a~lae~~Gl~~ilGAFlaGl~lp~~------~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~------~~~~~~ 351 (832)
T PLN03159 284 SGFITDAIGTHSVFGAFVFGLVIPNG------PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ------GPATWG 351 (832)
T ss_pred HHHHHHHhCccHHHHHHHHhhccCCc------chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc------CchHHH
Confidence 89999999999999999999999841 111222333333445689999999999998542211 112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhh
Q 009116 344 VSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYK 403 (543)
Q Consensus 344 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~ 403 (543)
...+++++.+++|+++.+..+++ .++++|+++.+|....+||.++++++..
T Consensus 352 ~~~~liv~a~~gK~~g~~l~a~~---------~g~~~~eal~lG~lm~~kG~~~Lii~~i 402 (832)
T PLN03159 352 LLVLVIIMASAGKIMGTIIIAFF---------YTMPFREGITLGFLMNTKGLVEMIVLNV 402 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44444556778898887765543 3899999999999999999999987654
No 14
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.95 E-value=9.2e-25 Score=241.29 Aligned_cols=356 Identities=14% Similarity=0.080 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHH
Q 009116 32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFM 111 (543)
Q Consensus 32 ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~ 111 (543)
++.++.+.+.+++| .++|.+++++++|+++||..++..+.. + .-+.+.++++.+++|..|+|+|.+++|+..+
T Consensus 13 ~l~~a~~~~~l~~r-l~~p~ilg~ilaGillGP~~lg~i~~~--~----~i~~laelGvv~LLF~iGLel~~~~l~~~~~ 85 (601)
T PRK03659 13 FLFAAVVAVPLAQR-LGIGAVLGYLLAGIAIGPWGLGFISDV--D----EILHFSELGVVFLMFIIGLELNPSKLWQLRR 85 (601)
T ss_pred HHHHHHHHHHHHHH-hCCChHHHHHHHHHHhccccccCCCcH--H----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444555555 679999999999999999765543211 1 1123668999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCC--chhHHHHHHHHhhhhH
Q 009116 112 TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGEGVVNDA 189 (543)
Q Consensus 112 ~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~--~~l~~ll~gEs~lND~ 189 (543)
.++.++..++++++++++...++ + +++|..++++|..++.||++.+.++++|.+. .+.+++..+..++||.
T Consensus 86 ~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di 158 (601)
T PRK03659 86 SIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDL 158 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHH
Confidence 99999999999998777665443 4 7899999999999999999999999999873 3688899999999999
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 009116 190 TSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLA 268 (543)
Q Consensus 190 ~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G-~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~A 268 (543)
.++.++.++..+.....+...+.... ..+ ..+++.++.| ++...+.++... .+.++.....++++++++..++
T Consensus 159 ~~i~ll~l~~~l~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~l~ 232 (601)
T PRK03659 159 AVIPALALVPLLAGSADEHFDWMKIG-MKV----LAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSALFM 232 (601)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHH
Confidence 88888777655543221111111111 111 1111112222 334444454422 3344555666677788888899
Q ss_pred HHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchHHHHHHH
Q 009116 269 ELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAIL 348 (543)
Q Consensus 269 e~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~ 348 (543)
|.+|+|.++++|++|+++++. +.++..+.-.+.+..++.++||+.+|+.++....++ .+...+.+
T Consensus 233 ~~~Gls~~LGAFlaGl~l~~s-------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--------~~~~il~~ 297 (601)
T PRK03659 233 DALGLSMALGTFIAGVLLAES-------EYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT--------HLLWVLIS 297 (601)
T ss_pred HHhCccHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--------hHHHHHHH
Confidence 999999999999999999952 223344444555566888999999999985432211 12233344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHHHHHHHHH
Q 009116 349 LGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVL 428 (543)
Q Consensus 349 ~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl 428 (543)
.++.+++|++.++..... .+.+++++..++...-+||..++.++..... .+. ..+...+..+.+++
T Consensus 298 ~~~~l~~K~~~~~~~~~~---------~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~-~g~----i~~~~~~~lv~~v~ 363 (601)
T PRK03659 298 VVVLVAVKGLVLYLLARL---------YGLRSSERMQFAGVLSQGGEFAFVLFSAASS-QRL----LQGDQMALLLVVVT 363 (601)
T ss_pred HHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhccccHHHHHHHHHHh-CCC----CCHHHHHHHHHHHH
Confidence 556788999888875543 3789999998887766899999987654321 222 22334444456666
Q ss_pred HHHhhhhh
Q 009116 429 FSTVVFGL 436 (543)
Q Consensus 429 ~T~~v~g~ 436 (543)
+|+++.+.
T Consensus 364 ls~~~tP~ 371 (601)
T PRK03659 364 LSMMTTPL 371 (601)
T ss_pred HHHHHHHH
Confidence 67666333
No 15
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.95 E-value=1.3e-25 Score=225.50 Aligned_cols=268 Identities=18% Similarity=0.225 Sum_probs=208.2
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHH
Q 009116 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM 114 (543)
Q Consensus 35 ~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il 114 (543)
++.+.+.+.+| .++|++.++++.|+++||...+..+ +.+ .-+.+.++++.+++|.+|+|+|.+++||+++.+.
T Consensus 3 ~a~~~~~l~~~-l~lP~~v~~il~GillGp~~lg~i~--~~~----~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~ 75 (273)
T TIGR00932 3 AAVLAVPLSRR-LGIPSVLGYLLAGVLIGPSGLGLIS--NVE----GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAF 75 (273)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHhCcccccCCC--ChH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44455666665 6799999999999999997554322 111 1133668899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCC-c-hhHHHHHHHHhhhhHHHH
Q 009116 115 LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVFGEGVVNDATSV 192 (543)
Q Consensus 115 ~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~-~-~l~~ll~gEs~lND~~ai 192 (543)
..+..+++++++.++....+++ ++++..++++|+++++|||..+.++++|.+. + +..+++.+++++||.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 76 GVGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 9999999999777777666666 8899999999999999999999999999873 3 799999999999999999
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q 009116 193 VLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFY 272 (543)
Q Consensus 193 vlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~ 272 (543)
+++.+......+...+ .......+.......++.+++.++...++.|+... +++.+.+...++.+.+..+.++|.+|
T Consensus 150 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g 226 (273)
T TIGR00932 150 PLLALLPLLATSASTE--HVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLG 226 (273)
T ss_pred HHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 9999887665432111 11122333344445556667777777777777643 23345667788888999999999999
Q ss_pred cchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccc
Q 009116 273 LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDA 325 (543)
Q Consensus 273 ~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~ 325 (543)
.|+++|+|++|+++++... +++..+..+.+..++.+++|+++|+++
T Consensus 227 ~s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 227 LSMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred CcHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 9999999999999997431 233555666666899999999999976
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.95 E-value=2e-24 Score=237.77 Aligned_cols=367 Identities=13% Similarity=0.108 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHh
Q 009116 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRN 109 (543)
Q Consensus 30 ~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~ 109 (543)
..++..+.+.+++++| .++|..++++++|+++||..++.... . + ..+.+.++++..++|.+|+|+|.+.+|++
T Consensus 12 ~~~l~~a~~~~~l~~r-l~~P~ivg~IlaGillGp~~lg~~~~--~---~-~~~~la~lGli~llF~~Gle~d~~~l~~~ 84 (558)
T PRK10669 12 VGGLVLAFILGMLANR-LRISPLVGYLLAGVLAGPFTPGFVAD--T---K-LAPELAELGVILLMFGVGLHFSLKDLMAV 84 (558)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhCccccccccc--h---H-HHHHHHHHHHHHHHHHhHhcCCHHHHHHH
Confidence 4455566666666666 67999999999999999976543211 1 1 12447789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccC--CchhHHHHHHHHhhh
Q 009116 110 FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TPLLYSLVFGEGVVN 187 (543)
Q Consensus 110 ~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~--~~~l~~ll~gEs~lN 187 (543)
++.....+..++++++++ +....+.+ ++++..++++|+++|.|+++.+.++++|.+ ..+..+++.+.+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~ 157 (558)
T PRK10669 85 KSIAIPGAIAQIAVATLL-GMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVE 157 (558)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHH
Confidence 776666666676666543 44444455 789999999999999999999999999976 337899999999999
Q ss_pred hHHHHHHHHHHHHhhhc----ccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009116 188 DATSVVLFNAIQSFDLS----HINLSIA-LKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAY 262 (543)
Q Consensus 188 D~~aivlf~~~~~~~~~----~~~~~~~-~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 262 (543)
|..++.++.++..+... ..+.... ...........+...+..++..++..++.++... ++.++......+++++
T Consensus 158 Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~~~l 236 (558)
T PRK10669 158 DLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLALAL 236 (558)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHH
Confidence 99998888776554321 1111111 1111111111112222333444455555555432 2223333333444444
Q ss_pred HH-HHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCch
Q 009116 263 LS-YMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKS 341 (543)
Q Consensus 263 l~-y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~ 341 (543)
+. +..+|.+|+|.++++|++|+++++.. .++...+....+..++.++||+.+|++++....++ .
T Consensus 237 ~~a~~~~~~lGls~~lGAflaGl~l~~~~-------~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~--------~ 301 (558)
T PRK10669 237 GIAFGAVELFDVSFALGAFFAGMVLNESE-------LSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQ--------Q 301 (558)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHhCCh-------hHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHH--------H
Confidence 43 34579999999999999999998521 11122222223456789999999999985543322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHH
Q 009116 342 VGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMIT 421 (543)
Q Consensus 342 ~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~ 421 (543)
......++++.+++|+++++..+.. .+.++|+++.++....+||..++.++..... .+ -..+..+.
T Consensus 302 ~~~~~~~~~~~~v~K~~~~~~~~~~---------~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~-~g----ii~~~~~~ 367 (558)
T PRK10669 302 PLAVLATLAIIVFGKSLAAFFLVRL---------FGHSRRTALTIAASLAQIGEFAFILAGLGMA-LN----LLPQAGQN 367 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChhhHHHHHHHHhcccchHHHHHHHHHh-CC----CCCHHHHH
Confidence 1122334455778898888765543 2778999999999988899999987754321 22 24455666
Q ss_pred HHHHHHHHHHhhhhhhHHH
Q 009116 422 STITVVLFSTVVFGLMTQP 440 (543)
Q Consensus 422 ~t~~vVl~T~~v~g~~~~~ 440 (543)
.++.++++|+++.+...+.
T Consensus 368 ~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 368 LVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777788888885554443
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=3e-12 Score=124.06 Aligned_cols=365 Identities=16% Similarity=0.188 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHH
Q 009116 29 FVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFR 108 (543)
Q Consensus 29 ~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~ 108 (543)
.+..++++.++|.+..|. ++|.-.++++.|++.||+..++... ....++ ..++....++|-.|++.+.|++..
T Consensus 11 iv~gl~lAFl~G~lA~rl-rlsPLVGyL~AGv~~gpftpGFvad-----~~La~~-LAelGViLLmFgvGLhfslkdLLa 83 (408)
T COG4651 11 IVGGLVLAFLLGALANRL-RLSPLVGYLLAGVLAGPFTPGFVAD-----QTLAPE-LAELGVILLMFGVGLHFSLKDLLA 83 (408)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhcCCCCCCcccc-----hhHHHH-HHHhhHHHHHHhcchheeHHHHhh
Confidence 445677888888888874 5999999999999999864333211 122333 678889999999999999999875
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccC--CchhHHHHHHH
Q 009116 109 NFMTIMLFGAVGTLISFVII---SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TPLLYSLVFGE 183 (543)
Q Consensus 109 ~~~~il~la~~g~~i~~~~i---~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~--~~~l~~ll~gE 183 (543)
... .|++|.+...... +.+.-.+. +|++...+.+|-++|-.+.|+.+.-++|.+ ..+.+++-.|=
T Consensus 84 vk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGw 153 (408)
T COG4651 84 VKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGW 153 (408)
T ss_pred HHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEee
Confidence 532 3345554443332 22332333 899999999999999999999999998765 33556666677
Q ss_pred HhhhhHHHHHHHHHHHHh---hh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCchHHHHHH
Q 009116 184 GVVNDATSVVLFNAIQSF---DL-SHINLSIALKFVGSFFYLFIASTMLGVIAGLL-SAFIIKKLYMGRHSTDREVALMI 258 (543)
Q Consensus 184 s~lND~~aivlf~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~-~~~~~~~~~~~~~~~~~~~~l~l 258 (543)
=++.|...++.....-++ .. ++....+....++-.+.....-+.++.++|.- .-|+..+... ..+++.-....+
T Consensus 154 LiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~-tGsrElf~L~vl 232 (408)
T COG4651 154 LIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA-TGSRELFTLAVL 232 (408)
T ss_pred hhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHH
Confidence 788886665443333222 22 12222222222222232333334455555543 3444555532 233333333444
Q ss_pred HHHH-HHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCC
Q 009116 259 LMAY-LSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337 (543)
Q Consensus 259 ~~~~-l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~ 337 (543)
.+++ .+|..+|.+|.|--+++|++|++++.. +.+++..++. -.+...+..+||+-+||..++...-+
T Consensus 233 a~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es------elshraa~~s-lpLrdaFaVlFFvsVGmlf~P~~l~~----- 300 (408)
T COG4651 233 AIALGVAFGAAELFGVSFALGAFFAGMVLAES------ELSHRAAEDS-LPLRDAFAVLFFVSVGMLFDPMILIQ----- 300 (408)
T ss_pred HHHHHHhhccceeeccchhHHHHHHHHHhcch------hhhHHHHHhc-cCHHHHHHHHHHHHhhhhcCcHHhhc-----
Confidence 4444 356677899999999999999999832 1222222211 23456778899999999985543110
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhH
Q 009116 338 PGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNA 417 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~ 417 (543)
.-......+.+++.+|-+..|.. .+. .+.+.|..+.++-+---.|.-++.++-.-.. .+.-+...++
T Consensus 301 ---~pl~vlatllii~~gKs~aaf~i---vr~------Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~-l~llp~~gr~ 367 (408)
T COG4651 301 ---QPLAVLATLLIILFGKSVAAFFI---VRA------FGHPVRTALTISASLAQIGEFSFILAGLGIK-LNLLPEAGRD 367 (408)
T ss_pred ---chHHHHHHHHHHHhhhHHHHHHH---HHH------hCCcchHHHHHHHHHHhhhhHHHHHHHHhhh-hccCcHHHHH
Confidence 11222344555677776655532 222 2556677777665443356666666532211 1222233455
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHH
Q 009116 418 IMITSTITVVLFSTVVFGLMTQP 440 (543)
Q Consensus 418 ~i~~~t~~vVl~T~~v~g~~~~~ 440 (543)
.+. ..-+.|++.+++...-
T Consensus 368 Lvl----agailsIl~nPllf~~ 386 (408)
T COG4651 368 LVL----AGAILSILLNPLLFAL 386 (408)
T ss_pred HHH----HHHHHHHHHhHHHHHH
Confidence 555 4456667776664443
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.55 E-value=4e-13 Score=151.21 Aligned_cols=384 Identities=16% Similarity=0.142 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccCh----hHHHHHhhHHHhHHhhhcCCHHH
Q 009116 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE----DLFFIYLLPPIIFNAGFQVKKKQ 105 (543)
Q Consensus 30 ~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~----~~~~~~~Lp~IlF~aG~~l~~~~ 105 (543)
+.+++...-+.|++-|+.++|..+..++.|+++||..++-........+..+. +.+..++.-..+|..|+++|.+.
T Consensus 28 ~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~ 107 (769)
T KOG1650|consen 28 IILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRV 107 (769)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34444444556666666779999999999999999877654322222222111 33556777889999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccC----CCCHHHHHHHhccccCCCHHHHHHhhcccC--CchhHH
Q 009116 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFK-QMNIG----TLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TPLLYS 178 (543)
Q Consensus 106 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~-~~~~~----~l~~~~alllGailsaTDpv~v~~il~~~~--~~~l~~ 178 (543)
++|+.+....+|+.++++++.. |.+....+. ..... ......-...+...|.|+-..+..++.|++ .++++.
T Consensus 108 i~~~~kka~~I~~~~~~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Gr 186 (769)
T KOG1650|consen 108 IRRTGKKAIVIAIASVVLPFGL-GFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGR 186 (769)
T ss_pred hhccCceeEEEEEEEeehhhHh-hhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhh
Confidence 9999999888998888888543 333332221 11110 111225567788889999999999999887 457999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009116 179 LVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMI 258 (543)
Q Consensus 179 ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l 258 (543)
+...++++||..++.++.....+...... ........+...+...++.=.++=....|+.|+.-.++...+......+
T Consensus 187 la~saa~v~dv~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l 264 (769)
T KOG1650|consen 187 LALSAAVVNDVAGWILLALALAFSSELKL--SPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTL 264 (769)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhccCCC--cchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhH
Confidence 99999999999999988877766554221 0111112222222222222223334455555552212222334566778
Q ss_pred HHHHHHHHHHHHhh-cchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCC
Q 009116 259 LMAYLSYMLAELFY-LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337 (543)
Q Consensus 259 ~~~~l~y~~Ae~~~-~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~ 337 (543)
...+.+....+.++ .++++++|..|+++-|.. +-...-.+.+-.....++.++.|...|...+.... +
T Consensus 265 ~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~-----p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i-~----- 333 (769)
T KOG1650|consen 265 LGVLASAFLTDLIGGIHSIFGAFILGLAIPHGP-----PLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRI-N----- 333 (769)
T ss_pred HHHHHHHHHHHHhccccccchhheEEEecCCCC-----chhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHH-H-----
Confidence 88888888899887 888999999999998643 11222233333344568899999999999744321 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhH
Q 009116 338 PGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNA 417 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~ 417 (543)
.+...........+++++++...+.. .|++++|.+.++....-||-+.+..--... +.+ ..++
T Consensus 334 ---~~~~~~~~i~~~~~~K~l~t~~~sl~---------~k~p~~~~l~l~~lm~~kgl~el~~~~~~~-~~~----~~~~ 396 (769)
T KOG1650|consen 334 ---KWGALIRTILIFGAVKLLSTLGTSLY---------CKLPLRDSLALGLLMSTKGLVELIVLNTGL-DRK----ILSD 396 (769)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCchhHHHHHHHHHHhhhHHHHHHHHHHh-hcC----Cccc
Confidence 12233444556778888887766653 289999999999998888888876532221 111 1233
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhCCC
Q 009116 418 IMITSTITVVLFSTVVFGLMTQPLVRILLPS 448 (543)
Q Consensus 418 ~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~ 448 (543)
..++.-+..+++++.+ ++|+++.+.+.
T Consensus 397 ~~f~~~vl~alv~t~I----~~~~l~~~y~p 423 (769)
T KOG1650|consen 397 EGFTVMVLMALVSTFI----TPPLLMFLYDP 423 (769)
T ss_pred chHHHHHHHHHHHHhh----HHHHHHHhcch
Confidence 3343333334444444 78888776643
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.17 E-value=9e-08 Score=99.92 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=158.6
Q ss_pred HHhhHHHhHHhhhcCCH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCC
Q 009116 87 IYLLPPIIFNAGFQVKK-------KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAAT 159 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~-------~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaT 159 (543)
..+..+--|..|+|+|+ +..||...+ ..-|+.|++.++. .|+.+ +..-..+.-=-++-++|
T Consensus 68 DgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPal-----iy~~~------n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 68 DGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPAL-----IYVAV------NLAGGGALRGWAIPTAT 135 (423)
T ss_pred HhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHH-----HHHHH------hCCchhhhhhhhhhhhh
Confidence 45566677899999965 344444444 3456677777643 34444 22222223333677899
Q ss_pred CHHHHHHhhcccC--Cc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 160 DSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLS 236 (543)
Q Consensus 160 Dpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~ 236 (543)
|.+.++.++...+ .| +++..+.+-+++||..++++-.++. .++.+..... ..... ...
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~~~~L~----------~a~~~------~~~ 196 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELNLEALL----------LALVP------LAL 196 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCCHHHHH----------HHHHH------HHH
Confidence 9999999998754 46 7999999999999999998877654 2233321110 00011 111
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccccccc-c----cchhHHHHHHHHHH-H
Q 009116 237 AFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV-T----ESSRVTTKHAFATL-S 310 (543)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~-~----~~~~~~~~~~~~~l-~ 310 (543)
.+++++. +.+. ....+.+.....+..+..|.++.+|.++.|+++-.....+. + ++-.++.++..+.+ +
T Consensus 197 l~~l~~~----~V~~--~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~ 270 (423)
T PRK14853 197 FWLLVQK----RVRK--WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSA 270 (423)
T ss_pred HHHHHHc----CCch--hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHH
Confidence 1222322 2222 23333335577888899999999999999999964222110 0 11123455555544 5
Q ss_pred HHHhHHH-HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 311 FVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 311 ~l~~~~~-Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
++.-++| |...|+++.....+... .... ....+.+..+++|.++++..+++.-.++. +.+.+.+|++..-++.
T Consensus 271 ~~ILPLFAFANaGV~l~~~~~~~~~---~~~p--v~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~ 345 (423)
T PRK14853 271 GVAVPVFAFFSAGVAIGGLSGLGAA---LTDP--IVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL 345 (423)
T ss_pred HHHHHHHHHHHhhheecCchhHHHH---hhch--HHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH
Confidence 7888999 99999998542211000 0001 33445567899999999999988765543 3466888888766664
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.37 E-value=3.6e-05 Score=79.21 Aligned_cols=255 Identities=15% Similarity=0.199 Sum_probs=152.2
Q ss_pred HHhhHHHhHHhhhcCCHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-ccccC
Q 009116 87 IYLLPPIIFNAGFQVKKKQFF-------RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAA 158 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f~-------~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllG-ailsa 158 (543)
..+..+--|..|+|+|++-.. |..-+ ..-|+.|++.++. .|..+.. +-++ ..=| ++=.+
T Consensus 58 DgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa~-----iy~~~n~-~~~~------~~~GW~IP~A 124 (373)
T TIGR00773 58 DGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPAL-----IYLAFNA-NDPI------TREGWAIPAA 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHH-----HHhheec-CCCc------ccCccccccH
Confidence 455566778999999866432 22222 2344556666532 3444422 1100 0111 45678
Q ss_pred CCHHHHHHhhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 159 TDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLL 235 (543)
Q Consensus 159 TDpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~ 235 (543)
||.+-++.++.=. +.| .++.-+..-+++||..+|++-.++.+ ++.+.. + .. ..+.+..
T Consensus 125 TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~i~~~---~-------L~------~a~~~~~ 185 (373)
T TIGR00773 125 TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---NDLSMA---A-------LL------VAAVAIA 185 (373)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CCCCHH---H-------HH------HHHHHHH
Confidence 9999999887643 467 69999999999999999977554432 233321 1 11 1111122
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHH-HHHh
Q 009116 236 SAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLS-FVAE 314 (543)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~ 314 (543)
..+.++|. +.+. ....+....+.++.....|.+..+|.+..|+++.+....+ ++..++.++..+... ++.-
T Consensus 186 ~l~~~~~~----~v~~--~~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 186 VLAVLNRC----GVRR--LGPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred HHHHHHHc----CCch--hhHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHHH
Confidence 23344443 2222 2222222233333337999999999999999999753222 223355666666555 6777
Q ss_pred HHH-HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 315 IFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 315 ~~~-Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
++| |...|+.+.... .+.. ... ....+.+..+++|.++++..+++.-+++. +.+++.+|++..-++.
T Consensus 258 PlFAFanAGv~l~~~~-~~~~-----~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~ 326 (373)
T TIGR00773 258 PLFAFANAGVSLQGVS-LNGL-----TSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV 326 (373)
T ss_pred HHHHHHhcCeeeecCc-chhh-----cCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 988 999999985432 1110 011 23445667889999999999998876654 4567889988776665
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.46 E-value=0.042 Score=57.02 Aligned_cols=259 Identities=17% Similarity=0.184 Sum_probs=145.6
Q ss_pred HHHHhhHHHhHHhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-ccc
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIF 156 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllG-ail 156 (543)
+=..+..+--|..|+|+|++-. ||..-++ .-|+.|++.++. .|+.+.. +-+. ..=| ++=
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi-~AAlGGmivPAl-----Iy~~~n~-g~~~------~~~GWgIP 129 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPA-IAAVGGMVVPAL-----IYAAFNY-NNPE------TLRGWAIP 129 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHHH-----HHheeec-CCCc------ccCccccc
Confidence 3345666677899999986643 2222222 244556666533 2444422 1100 0011 456
Q ss_pred cCCCHHHHHHhhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 157 AATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG 233 (543)
Q Consensus 157 saTDpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G 233 (543)
.+||.+-++.++.=. +.| .++.-+..-+++||..++++-.++.. ++.+.. + .... +.+
T Consensus 130 mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~i~~~---~-------L~~a------~~~ 190 (389)
T PRK09560 130 AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SDLSLP---A-------LALA------AIA 190 (389)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCCCHH---H-------HHHH------HHH
Confidence 789999999988743 467 68999999999999999977554432 222221 1 1111 111
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Q 009116 234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVA 313 (543)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 313 (543)
....+.++|. +. ......+......++.--.-|.+.-+|-+..|+++-.+.+....++--++.+|..+......
T Consensus 191 ~~~l~~ln~~----~v--~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~ 264 (389)
T PRK09560 191 IAVLFLLNRL----GV--TKLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFA 264 (389)
T ss_pred HHHHHHHHHc----CC--ccchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhh
Confidence 2222334443 11 12333334455566666677888999999999999874332211111244555655544433
Q ss_pred hHHH--HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 314 EIFI--FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 314 ~~~~--Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
-.-+ |.=.|..+.... ... .... ....+.+.++++|.++++..+++.-+++. +.+++.+|++-.-++.
T Consensus 265 IlPlFAlaNAGV~l~~~~-~~~----~~~p--v~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~ 335 (389)
T PRK09560 265 ILPLFAFANAGVSLAGIS-LSS----LTSP--VPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV 335 (389)
T ss_pred hHHHHHhhcCCeeecCCc-HHh----ccCc--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 3333 445566653221 110 0011 22334556889999999999998876654 4567888888766654
No 22
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.26 E-value=0.096 Score=54.37 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=144.0
Q ss_pred HHhhHHHhHHhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-ccccC
Q 009116 87 IYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAA 158 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllG-ailsa 158 (543)
..+..+--|..|+|+|.+-. ||..-++ .-|+.|++.++. .|+.+.. +-+. ..=| ++=.|
T Consensus 65 DgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi-~AAlGGmivPAl-----iy~~~n~-~~~~------~~~GWaIP~A 131 (388)
T PRK09561 65 DGLMAVFFLLIGLEVKRELLEGSLASRRQAALPV-IAAIGGMLVPAL-----IYLLFNY-ADPV------TREGWAIPAA 131 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHH-HHHHhchHHHHH-----HHhheec-CCCc------ccCccccccH
Confidence 45566677899999986643 2222222 244556666533 3444422 1100 0111 45678
Q ss_pred CCHHHHHHhhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 159 TDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLL 235 (543)
Q Consensus 159 TDpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~ 235 (543)
||.+-++.++.=. +.| .++.-+..-+++||..++++-.++-+ ++.+.. +....... ..
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~----------~L~~a~~~------~~ 192 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SDLSMV----------SLGVAAVA------IA 192 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCccHH----------HHHHHHHH------HH
Confidence 9999999988543 467 68999999999999999977554432 233321 11111111 12
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhH
Q 009116 236 SAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEI 315 (543)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 315 (543)
.-+.++|. +. ......+......++.-..-|.++-+|-+..|+++-.+.++.. +--++.+|..+......-.
T Consensus 193 ~l~~ln~~----~v--~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~--~pl~rleh~L~p~v~~~Il 264 (388)
T PRK09561 193 VLAVLNLC----GV--RRTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAERLEHGLHPWVAFLIL 264 (388)
T ss_pred HHHHHHHc----CC--ccchHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCC--CHHHHHHHHhhhhhhheeH
Confidence 22333443 11 1123333455556666667788899999999999987543221 1123455555544333333
Q ss_pred HH--HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 316 FI--FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 316 ~~--Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
-+ |.=.|..+.... .+.. ... ....+.+..+++|.++++..+++.-+++. +.+.+.+|++..-++.
T Consensus 265 PlFAfaNAGV~l~~~~-~~~~----~~p--v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~ 333 (388)
T PRK09561 265 PLFAFANAGVSLQGVT-LDGL----TSP--LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV 333 (388)
T ss_pred HHHHhhcCCeeeccCc-HHhh----cCc--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 33 555566653221 1110 011 22334556889999999999998876654 4567888988776664
No 23
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.05 E-value=0.19 Score=51.50 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=79.8
Q ss_pred cChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcccCCCCHHHHHHHhccc
Q 009116 80 FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVII---SAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (543)
Q Consensus 80 ~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i---~~~~~~l~~~~~~~~l~~~~alllGail 156 (543)
.+.|....+++..|.|..|+++|.+++++..+..-.... +...++.+. +.....+++.+. +-+....+++-+++
T Consensus 27 ~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll~~~~~~l~~~~~--~~~l~~Gl~~~~~l 103 (313)
T PF13593_consen 27 IKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLLGFGLSRLFPAFL--PPELALGLLILACL 103 (313)
T ss_pred cchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHhhC
Confidence 344556677788899999999999999887665322221 112222222 223333332110 22334444444444
Q ss_pred cCC-CHHHHHHhhcccCCchhHHHHHHHHhhhhHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 157 AAT-DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDL-SHINLSIALKFVGSFFYLFIASTMLGVIAGL 234 (543)
Q Consensus 157 saT-Dpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~ 234 (543)
-+| +..++..-.. .++.. .-.-++.++...++++.=....+.. ++....+....+.+....++.-.++|-.+..
T Consensus 104 PtTv~S~v~~T~~A-gGN~a---~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~ 179 (313)
T PF13593_consen 104 PTTVSSSVVLTRLA-GGNVA---LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRR 179 (313)
T ss_pred CchhhHHHHHHHHc-CCCHH---HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 2222222121 23321 1123566777788877665555433 2222334455666777777777777776665
Q ss_pred HHHHHHHH
Q 009116 235 LSAFIIKK 242 (543)
Q Consensus 235 ~~~~~~~~ 242 (543)
......++
T Consensus 180 ~~~~~~~~ 187 (313)
T PF13593_consen 180 WVPKWVAR 187 (313)
T ss_pred HHHHHHHH
Confidence 55544433
No 24
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.93 E-value=0.4 Score=49.69 Aligned_cols=255 Identities=13% Similarity=0.149 Sum_probs=141.6
Q ss_pred HHhhHHHhHHhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-ccccC
Q 009116 87 IYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAA 158 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllG-ailsa 158 (543)
..+..+--|..|+|+|++-. ||..-+ ..-|+.|++.++. .|..+.. + ....=| +|=.+
T Consensus 62 DgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-~~AAlGGmivPAl-----Iy~~~n~------~--~~~~~GW~IP~A 127 (383)
T PRK14854 62 DGLMAIYFLYIGLEIKREIIVGTLSKPSNIITP-AIAAFAGLAMPSL-----IYLSINH------D--IKVINGWAIPSA 127 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHH-----HHHhhcc------C--CcccCccccccH
Confidence 45566677899999986643 222222 2345556666633 3444421 1 111112 46689
Q ss_pred CCHHHHHHhhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 159 TDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLL 235 (543)
Q Consensus 159 TDpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~ 235 (543)
||.+-++.++.=. +.| .++..+..-+++||..++++-.++. .++.+.. +.......++
T Consensus 128 TDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t~~i~~~----------~L~~A~~~~~------ 188 (383)
T PRK14854 128 TDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---TKSLSLL----------SLSLGTLFIL------ 188 (383)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CCCccHH----------HHHHHHHHHH------
Confidence 9999999887643 466 6999999999999999997755443 2222221 1111111111
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhH
Q 009116 236 SAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEI 315 (543)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 315 (543)
.-+..+|. ++.+. ....+......++.-..-|.+.-+|-+..|+++-...... ++.-++.+|..+......-.
T Consensus 189 ~l~~~nr~---~~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~--~~pl~rleh~L~p~v~~~Il 261 (383)
T PRK14854 189 AMIICNRI---FKINR--SSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDK--DSPANFMEDSLHPWIIYFIL 261 (383)
T ss_pred HHHHHHHh---cCCce--ehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC--CCHHHHHHHHhhchHHHhhH
Confidence 11223332 12221 2223345555666666778889999999999998743221 11123444554444333333
Q ss_pred HH--HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 316 FI--FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 316 ~~--Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
-+ |.=.|..+.... .+.. ... ....+.+..+++|.++++..+++.-+++. +.+++.+|++..-++.
T Consensus 262 PlFA~aNAGV~l~~~~-~~~~----~~p--v~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~ 330 (383)
T PRK14854 262 PVFAFANAGISFSGIS-FSIL----FEP--ITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL 330 (383)
T ss_pred HHHHhhcCCeeeccCc-HHhh----cCc--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 33 555566653322 1110 011 22334556889999999999988765432 3466788888766664
No 25
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.90 E-value=0.17 Score=53.37 Aligned_cols=255 Identities=15% Similarity=0.158 Sum_probs=141.8
Q ss_pred HHhhHHHhHHhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-ccccC
Q 009116 87 IYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAA 158 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllG-ailsa 158 (543)
..+..+--|..|+|+|.+-. ||..-+ ..-|+.|++.++. .|+.+.. +- + . .=| +|=.|
T Consensus 74 DgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lP-i~AAlGGmivPAl-----IY~~~n~-~~---~---~-~~GWgIPmA 139 (438)
T PRK14856 74 DVLMALFFLMIGLEIKRELLFGELSSFKKASFP-VIAALGGMIAPGL-----IYFFLNA-DT---P---S-QHGFGIPMA 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHH-HHHHHhccHHHHH-----HHhheec-CC---C---c-cCccccccH
Confidence 45566677899999986643 222222 2344556665532 3444422 10 0 0 112 46689
Q ss_pred CCHHHHHHhhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 159 TDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLL 235 (543)
Q Consensus 159 TDpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~ 235 (543)
||.+-++.++.=. +.| .++.-+..-+++||..+|++-.++.. ++.+. .+ ... .+.+..
T Consensus 140 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~~-------L~~------a~~~~~ 200 (438)
T PRK14856 140 TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLKF---AW-------LLG------ALGVVL 200 (438)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCcH---HH-------HHH------HHHHHH
Confidence 9999999988543 467 79999999999999999977554432 22222 11 111 111122
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccc--------------------
Q 009116 236 SAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVT-------------------- 295 (543)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~-------------------- 295 (543)
..++++|. +.+ .....+......++.--.-|.++-+|.+..|+++-.+.+.+..
T Consensus 201 ~l~~ln~~----~v~--~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T PRK14856 201 VLAVLNRL----NVR--SLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALL 274 (438)
T ss_pred HHHHHHHc----CCc--cccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccccc
Confidence 22334443 111 1233333555566666667888889999999999764322100
Q ss_pred --cc---------------h-hHHHHHHHHHHHHHHhHHH--HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHH
Q 009116 296 --ES---------------S-RVTTKHAFATLSFVAEIFI--FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLG 355 (543)
Q Consensus 296 --~~---------------~-~~~~~~~~~~l~~l~~~~~--Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~ 355 (543)
++ + -++.+|..+......-.-+ |.=.|+.+.. +.... ... +...+.+.++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~-~~~~~-----~~p--v~lGI~~GLvvG 346 (438)
T PRK14856 275 TKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDS-SINLE-----VDK--VLLGVILGLCLG 346 (438)
T ss_pred ccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceecc-chhhc-----cCc--HHHHHHHHHHhc
Confidence 00 0 1234444444333222333 4445666521 11100 011 223345568899
Q ss_pred HHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 356 RAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 356 R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
|.++++..+++.-+++. +.+.+.+|++-.-++.
T Consensus 347 K~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~ 380 (438)
T PRK14856 347 KPLGIFLITFISEKLKITARPKGISWWHILGAGL 380 (438)
T ss_pred chHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 99999999998876654 4567888988766654
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.88 E-value=0.23 Score=52.28 Aligned_cols=252 Identities=17% Similarity=0.148 Sum_probs=141.2
Q ss_pred HHhhHHHhHHhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-ccccC
Q 009116 87 IYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAA 158 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllG-ailsa 158 (543)
..+..+--|..|+|+|.+-. ||..-+ ..-|+.|++.++. .|+.+.. +- + . .=| +|=.|
T Consensus 69 DgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lP-iiAAlGGmivPAl-----Iy~~~n~-~~---~---~-~~GWgIPmA 134 (423)
T PRK14855 69 DGLMAVFFLLVGLEIKRELLIGELSSPRQAALA-VVAALGGMLVPAA-----LYTALNA-GG---P---G-ASGWGVPMA 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChHHHHHH-HHHHHhchHHHHH-----HHheeec-CC---C---c-cCccccccH
Confidence 45566677899999986643 222222 2344556665532 3444422 11 1 0 112 56689
Q ss_pred CCHHHHHHhhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 159 TDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLL 235 (543)
Q Consensus 159 TDpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~ 235 (543)
||.+-++.++.=. +.| .++.-+..-+++||..+|++-.++. .++.+. .+ ...... +..
T Consensus 135 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~~i~~---~~-------L~~a~~------~~~ 195 (423)
T PRK14855 135 TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---TSGLNL---LA-------LLLAAL------TWA 195 (423)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---CCCCCH---HH-------HHHHHH------HHH
Confidence 9999999988754 467 6999999999999999997654443 222222 11 111111 112
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccc--------------------
Q 009116 236 SAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVT-------------------- 295 (543)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~-------------------- 295 (543)
..+.++|. +. ......+......++.--.-|.+.-+|-+..|+++-.+..++..
T Consensus 196 ~l~~ln~~----~v--~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
T PRK14855 196 LALLAGRL----GV--TSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGAR 269 (423)
T ss_pred HHHHHHHc----CC--ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHH
Confidence 22333443 11 12333344555666666677888899999999999764111100
Q ss_pred -----------cchhHHHHHHHHHHHHHHhHHH--HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 009116 296 -----------ESSRVTTKHAFATLSFVAEIFI--FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFP 362 (543)
Q Consensus 296 -----------~~~~~~~~~~~~~l~~l~~~~~--Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~ 362 (543)
++--++.+|..+......-.-+ |.=.|+.+.... . .. +...+.+.++++|.++++.
T Consensus 270 ~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~--------~p--v~lGI~~GLvvGK~lGI~~ 338 (423)
T PRK14855 270 LRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-L--------GT--VSLGVFLGLLLGKPLGVVG 338 (423)
T ss_pred HHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-C--------Cc--HHHHHHHHHHhcchHHHHH
Confidence 0001234444444333322233 444566653211 0 11 2233455688999999999
Q ss_pred HHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 363 LSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 363 ~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
.+++.-+++. +.+.+.+|++-.-++.
T Consensus 339 ~s~lavkl~~a~lP~g~~w~~l~gv~~ 365 (423)
T PRK14855 339 GAWLAVRLGLASLPRRVNWLHMLGAGL 365 (423)
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 9998776654 4567888888766654
No 27
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.67 E-value=1 Score=46.76 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhc------cccchHHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhH-HhhhcCC
Q 009116 33 LCACIVIGHLLEEN------RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIF-NAGFQVK 102 (543)
Q Consensus 33 l~~~~~~~~~l~~~------~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~~~Lp~IlF-~aG~~l~ 102 (543)
.+...++|++++|+ ..+||++..=++..++++.++...... +++|. +.|+. +.| ..|+.-+
T Consensus 14 a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~----~~fd~~l~~~fml-----iFFttiglsa~ 84 (404)
T COG0786 14 AILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVS----LNFDTSLQDVFML-----IFFATIGLSAS 84 (404)
T ss_pred HHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEE----EeCCcccccHHHH-----HHHHHhccccc
Confidence 33444567777652 358999877777777777665433211 23333 22322 333 6789999
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 009116 103 KKQFFRNFMTIMLFGAVGTL 122 (543)
Q Consensus 103 ~~~f~~~~~~il~la~~g~~ 122 (543)
.+.+||-+++...+...+..
T Consensus 85 ~~~lkkgGk~l~if~~~a~~ 104 (404)
T COG0786 85 FKLLKKGGKKLAIFLATAAG 104 (404)
T ss_pred hhHHHhcChhHHHHHHHHHH
Confidence 99999999987766555444
No 28
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.77 Score=46.29 Aligned_cols=265 Identities=16% Similarity=0.168 Sum_probs=137.9
Q ss_pred HhHHhhhcCCHHHHHHh---HHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHH
Q 009116 93 IIFNAGFQVKKKQFFRN---FMTIM---LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQ 166 (543)
Q Consensus 93 IlF~aG~~l~~~~f~~~---~~~il---~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~ 166 (543)
.-+..|+|+|++-+.-. +++.. .-|..|++.++ ..|..+. .+-....===++-++||.+-++.
T Consensus 74 FFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n------~~~p~~~~GWaIP~ATDiAFAlG 142 (390)
T COG3004 74 FFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALN------AGDPATLEGWAIPMATDIAFALG 142 (390)
T ss_pred HHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheee------cCChhhhcCcCcccHHHHHHHHH
Confidence 34578999987766433 33222 22334444442 2233331 11111111126778999999999
Q ss_pred hhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 167 VLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL 243 (543)
Q Consensus 167 il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~ 243 (543)
++.-. +.| .++.-+..-+.+||.-++++-.++.. ++.+... ....++.+. .-..+.+.
T Consensus 143 vlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~a----------l~~a~~~i~------vL~~lN~~ 203 (390)
T COG3004 143 VLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMAA----------LGIAALAIA------VLAVLNRL 203 (390)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHHH----------HHHHHHHHH------HHHHHHHh
Confidence 98754 467 68888999999999988887655432 2222211 111111111 11233333
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHH-HHHHHhH-HHHHhh
Q 009116 244 YMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFAT-LSFVAEI-FIFLYV 321 (543)
Q Consensus 244 ~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~-~~Fv~l 321 (543)
+.+. ....+.+....+..-..-|.+.-+|-++.|+++--.+.+..++ -++.+|..+. ..++.-+ +-|.=.
T Consensus 204 ----~v~~--l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~sp--l~~leh~L~pwvaf~IlPlFaFaNA 275 (390)
T COG3004 204 ----GVRR--LSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESP--LERLEHALHPWVAFFILPLFAFANA 275 (390)
T ss_pred ----Cchh--hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCc--HHHHHHHhhhhHHHHHHHHHHHccC
Confidence 1111 2222333333333333445556666666776665433222222 2344444443 3444444 346667
Q ss_pred cccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH-hcccchhHHHH
Q 009116 322 GMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW-AGLMRGAVSMA 399 (543)
Q Consensus 322 G~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~GlpRGavs~a 399 (543)
|.++...+.-... ..+ ...+....+++|.+++|..+++.-.++- +.+.+.+|++..-++. +|+ -=.+++-
T Consensus 276 Gvsl~g~~~~~l~-----s~l--~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI-GFTMSlF 347 (390)
T COG3004 276 GVSLQGVSLSGLT-----SPL--TLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI-GFTMSLF 347 (390)
T ss_pred Ccccccccccccc-----cch--HHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh-hHHHHHH
Confidence 7776543311111 111 2233456789999999999988755442 3567899998766554 553 2245555
Q ss_pred hhhh
Q 009116 400 LAYK 403 (543)
Q Consensus 400 La~~ 403 (543)
++..
T Consensus 348 I~~L 351 (390)
T COG3004 348 IASL 351 (390)
T ss_pred HHHH
Confidence 5443
No 29
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=96.27 E-value=0.059 Score=55.84 Aligned_cols=262 Identities=16% Similarity=0.183 Sum_probs=130.3
Q ss_pred HHHHHhhHHHhHHhhhcCCHHHHHHh---HHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhcccc
Q 009116 84 LFFIYLLPPIIFNAGFQVKKKQFFRN---FMT---IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFA 157 (543)
Q Consensus 84 ~~~~~~Lp~IlF~aG~~l~~~~f~~~---~~~---il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGails 157 (543)
++-..+..+--|..|+|+|.+-..-. .++ =..-|+.|++.++. .|..+. ..-..+.-==++=.
T Consensus 58 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n------~~~~~~~~GW~IP~ 126 (378)
T PF06965_consen 58 WINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFN------AGGPEAAHGWAIPM 126 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG--------SSTTHHHHTSSSS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheee------cCCCCcCceEEecc
Confidence 34456677778899999986643211 111 22344555655532 344442 11111112226778
Q ss_pred CCCHHHHHHhhccc--CCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 158 ATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGL 234 (543)
Q Consensus 158 aTDpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~ 234 (543)
+||.+-++.++.=. +.| .++..+..-+++||..++++-.++-+ ++.+. . +...... +.
T Consensus 127 ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~~---~-------~L~~a~~------~~ 187 (378)
T PF06965_consen 127 ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGISL---L-------WLLLAAA------AL 187 (378)
T ss_dssp ---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------H---H-------HHHHHHH------HH
T ss_pred cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCCH---H-------HHHHHHH------HH
Confidence 99999999998643 466 68999999999999999987665532 22221 1 1111111 11
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccccccc--ccchhHHHHHHHHHH-HH
Q 009116 235 LSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV--TESSRVTTKHAFATL-SF 311 (543)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l-~~ 311 (543)
...+.++|. +.+. ....+......++.-..-|.+.-+|-+..|+++-...+.+. .++.-++.++..+.. ++
T Consensus 188 ~~l~~l~r~----~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~ 261 (378)
T PF06965_consen 188 LLLFVLNRL----GVRS--LWPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAF 261 (378)
T ss_dssp HHHHHHHHT----T-----THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCce--ehHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhh
Confidence 222334443 1111 22233334455555556688888999999999998765532 112234555555554 33
Q ss_pred HHhH-HHHHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH
Q 009116 312 VAEI-FIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW 388 (543)
Q Consensus 312 l~~~-~~Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 388 (543)
+.-+ |-|.=.|..+.....-+.. -.....+.+..+++|.++++..+++..+.+. +.+.+.+|++-.-++.
T Consensus 262 ~IlPlFAlaNAGV~l~~~~~~~~~-------~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~ 333 (378)
T PF06965_consen 262 VILPLFALANAGVSLSGSSLGDLT-------SPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL 333 (378)
T ss_dssp THHHHHHHHHS----SSS---THH-------HHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH
T ss_pred hhHHhHhheeCceEEecCchHhhh-------ChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 3333 3355566666432210000 0111223446789999999998887765553 3467888988766654
No 30
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.48 E-value=3.4 Score=42.10 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=67.0
Q ss_pred cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 009116 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (543)
Q Consensus 47 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~ 126 (543)
..++.....+++|+++|.......+ .-.+-.++.++.+ |..=+-.-|.+++.+++.+...+.+...+..+..++.
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~~-~~~~Gi~~~~k~~----Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLPA-RFKPGIKFSSKKL----LRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCcH-HHHhHHHHHHHHH----HHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4577888888888888851111111 1111233433434 4444556699999999999998777777666665544
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHh---ccccCCCHHHHHHhhcc
Q 009116 127 IISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQ 170 (543)
Q Consensus 127 ~i~~~~~~l~~~~~~~~l~~~~alllG---ailsaTDpv~v~~il~~ 170 (543)
.......-.+ +++...+.++| +|..++.-+++.+++|.
T Consensus 99 ~~~~lg~r~~------~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 99 LTYWLGRRLF------GLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 4332221223 67777888876 34445555555566654
No 31
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.42 E-value=7.1 Score=40.34 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=61.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009116 48 WMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVI 127 (543)
Q Consensus 48 ~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~ 127 (543)
.++.....+++|+++|.......+.....-.++..+.+.++. +-.-|++++.+++.+...+.+...+..+..+...
T Consensus 30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~g----IVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIG----ITLYGFRLTFPYIADVGPNEIVADTLILTSTFFL 105 (335)
T ss_pred CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHH----HHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 366666666777766653210011111111233344444443 3455899999999998888776665555444332
Q ss_pred HHHHHHHHHhhcccCCCCHHHHHHHh---ccccCCCHHHHHHhhcc
Q 009116 128 ISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQ 170 (543)
Q Consensus 128 i~~~~~~l~~~~~~~~l~~~~alllG---ailsaTDpv~v~~il~~ 170 (543)
......-.+ +++...++++| +|..++.-+++.+++|.
T Consensus 106 ~~~~g~k~l------~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A 145 (335)
T TIGR00698 106 TVFLGSSRL------KLDKQMSILLGAGSSICGAAAVAAIEPVIKA 145 (335)
T ss_pred HHHHHHHHh------CCChhHHHHHHcchhHHHHHHHHHhccccCC
Confidence 222221122 67777777776 34456666666666764
No 32
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.37 E-value=1.1 Score=42.21 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=50.2
Q ss_pred HhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHh
Q 009116 88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (543)
Q Consensus 88 ~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~i 167 (543)
+.+..++|..|.+++.+++++..+.--.+ +.+.+..+.+.-+.++.+... -++....+..|.++.+..|....+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l-~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLL-LIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence 34667899999999999999887652221 234444444444444333201 1233344555555544444444333
Q ss_pred hc-c--cCCchhHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 009116 168 LN-Q--DETPLLYSLVFGEGVVNDATSVVLFNAIQSFD 202 (543)
Q Consensus 168 l~-~--~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~ 202 (543)
.- + .++.. +-.+-..+|...+++..=....+.
T Consensus 77 ~~t~l~~Gd~~---ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 77 VFTYLAGGDVA---LSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHTT--HH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcc---cccceeeHHHHHHHHHHHHHHHHH
Confidence 22 1 22222 223345666666666555444443
No 33
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.28 E-value=1.7 Score=48.72 Aligned_cols=72 Identities=10% Similarity=0.207 Sum_probs=51.8
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~ 163 (543)
|..+++|+.-...|+++|.+.+..++..++.+.+..++.-.+.+..... ++ ++++.+++.+|..+++.....
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~------g~~~~~al~~g~~L~~~Gef~ 337 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY------GLRSSERMQFAGVLSQGGEFA 337 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhccccHH
Confidence 5677888888899999999999988877665555444444444333332 23 889999999998888776554
No 34
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.16 E-value=5.1 Score=40.84 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=86.4
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v 164 (543)
....++..|+|.-|+.++.+++++..+.-.... .|.+.++.+.-+.++.+-. -.+...-+..|-++-++-|..+
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vl-igl~~qfvlmPlla~~~~~-----~~~l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLVL-IGLAAQFVLMPLLALLLAK-----LFPLPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHhHHheeeCCCch
Confidence 346888999999999999999998877532221 2333344443333333221 1234455666766666666666
Q ss_pred HHhhcccCCc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 165 LQVLNQDETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL 243 (543)
Q Consensus 165 ~~il~~~~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~ 243 (543)
.+..--.-++ +.. +-...+.++..+++++.=.+..+..++..+.+.+..+.+.+.+.+.-+++|.++-.......++.
T Consensus 113 ~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 113 ASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred hHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543211111 111 11234455666666655544444333222334566677888888888888887776666655554
No 35
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.16 E-value=1.8 Score=48.81 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~ 163 (543)
|..+++|+.-...|.++|...+.+++..++.+.+..++.-.+.+.+.+.+ + ++++.+++.+|..++.-....
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~------g~~~~~a~~~gl~L~~~Gef~ 340 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L------GVPRKQRRWFAVLLGQGGEFA 340 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHhHHHHHHHHHhccccHH
Confidence 55677777777889999999998887776655554444444443333333 3 889999999999888665543
No 36
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.79 E-value=2.7 Score=46.71 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=46.5
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~ 163 (543)
+..+++|+.-...|+++|...+.+++..++.+.+...+.-.+...... .++ +.++.+++..|..+++.....
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~-~~~------g~~~~~a~~~gl~l~~~Gef~ 348 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLV-RLF------GHSRRTALTIAASLAQIGEFA 348 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCChhhHHHHHHHHhcccchH
Confidence 345677777778999999999988765554433333333322222222 223 789999999999888765544
No 37
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=93.66 E-value=2.6 Score=39.67 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=84.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhh-------H
Q 009116 19 DHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLL-------P 91 (543)
Q Consensus 19 ~~~~~~~i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~L-------p 91 (543)
++.-+.++....++..++..+++.+.+ .++|.+-..+++|+++..+......++. .+- |-.+|.-+.| =
T Consensus 11 ~ngLi~aFa~vG~~m~~s~~lS~~lT~-Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-Gla--Di~lfsGiglmGGaMlRD 86 (254)
T TIGR00808 11 KNGLITAFAVVGLMMYVSHLLSKYLTK-GKLHGSAIAITMGLVLAYVGGVYTGGEK-GLA--DIAIFGGFGLMGGAMLRD 86 (254)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHHcccccCCcc-ccc--hhhhhcchhhhhhHHHHH
Confidence 344444555555566666666666655 4599999999999999987654443321 111 1111111110 1
Q ss_pred HHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHH--------------HHhcccc
Q 009116 92 PIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYL--------------AIGAIFA 157 (543)
Q Consensus 92 ~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~al--------------llGails 157 (543)
+-+-..+++.|.++.||....-..--++|+++++.+-...++. | +++=..++ .-|+.+.
T Consensus 87 fAIvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~a-f------GY~DavS~tTIGAGAvTyIVGPVTGaAiG 159 (254)
T TIGR00808 87 LAIVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWA-F------GYRDAVSMTTIGAGAVTYIVGPVTGAAVG 159 (254)
T ss_pred HHHHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH-H------cCCCchhheeeccceEEEEecCccchhcc
Confidence 1355789999999999999887666678899887665544444 3 33222121 3466777
Q ss_pred CCCHHHHHHhhc
Q 009116 158 ATDSVCTLQVLN 169 (543)
Q Consensus 158 aTDpv~v~~il~ 169 (543)
+++.+..+++-.
T Consensus 160 AsS~ViALSIA~ 171 (254)
T TIGR00808 160 ASSEVIALSIAI 171 (254)
T ss_pred CCcchHHHHHHH
Confidence 777777776643
No 38
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=93.18 E-value=13 Score=39.10 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHh------ccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHH
Q 009116 34 CACIVIGHLLEE------NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFF 107 (543)
Q Consensus 34 ~~~~~~~~~l~~------~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~ 107 (543)
++..++|+++++ +..+|+++..=+++.++......... ..+++|..+ ...++.+.--..|+.-+.+.+|
T Consensus 13 ~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~----~~~~f~~~l-~~~lm~~fF~~igL~~~~~~lk 87 (368)
T PF03616_consen 13 SILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGG----ISISFDTSL-QDFLMIIFFTTIGLGASLKLLK 87 (368)
T ss_pred HHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCc----eEEEechhH-HHHHHHHHHHHHhhccchhhHH
Confidence 344455666654 34589887655555555544333221 114455432 2222222222567888888999
Q ss_pred HhHHHHHHHHHHHH
Q 009116 108 RNFMTIMLFGAVGT 121 (543)
Q Consensus 108 ~~~~~il~la~~g~ 121 (543)
|-++.+..+.....
T Consensus 88 kgg~~~~~~~~~~~ 101 (368)
T PF03616_consen 88 KGGKAVLIFLLIAI 101 (368)
T ss_pred hhHHHHHHHHHHHH
Confidence 88877666554443
No 39
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.58 E-value=2 Score=43.82 Aligned_cols=154 Identities=15% Similarity=0.132 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHH
Q 009116 33 LCACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFM 111 (543)
Q Consensus 33 l~~~~~~~~~l~~-~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~ 111 (543)
.+.+..+++.... ...+|....++++|+++|.... .+.+...-.+|..+.. |..=+-.=|++++..++.+...
T Consensus 20 a~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~--~~~~~~~GI~fs~k~L----Lr~gIvLlG~~ltl~~i~~~G~ 93 (334)
T COG2855 20 AGLAMLLGAFFFSIHLGLSALTLAILLGILLGILPQ--IPAQTSAGITFSSKKL----LRLGIVLLGFRLTLSDIADVGG 93 (334)
T ss_pred HHHHHHHhchHHhhhcCchHHHHHHHHHHHHhcccc--chhhhccchhhhHHHH----HHHHHHHHcceeeHHHHHHcCc
Confidence 3344444444332 3347788889999999993221 1111222345555544 4444556699999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhc---cccCCCHHHHHHhhcccCCchhHHHHHHHHhhhh
Q 009116 112 TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGA---IFAATDSVCTLQVLNQDETPLLYSLVFGEGVVND 188 (543)
Q Consensus 112 ~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGa---ilsaTDpv~v~~il~~~~~~~l~~ll~gEs~lND 188 (543)
+.+......+..+ ++++...--++ ++++..+++.|+ |..+..-+++-+++|.. .++...-+..-.++|-
T Consensus 94 ~~v~~~~~~l~~t-~~~~~~lg~~l------gld~~~a~Lia~GssICGasAiaA~~pvika~-~~eva~aIa~V~lfgt 165 (334)
T COG2855 94 SGVLIIAITLSST-FLFAYFLGKLL------GLDKKLALLIAAGSSICGASAIAATAPVIKAE-EEEVAVAIAVVVLFGT 165 (334)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHh------CCCHHHHHHHHccchhhHHHHHHHhCCcCCCC-ccccceehhhHHHHHH
Confidence 7766654444333 33333222234 899999999884 44455555555666532 2233333333334444
Q ss_pred HHHHHHHHHHHHh
Q 009116 189 ATSVVLFNAIQSF 201 (543)
Q Consensus 189 ~~aivlf~~~~~~ 201 (543)
+++++|=.+..+
T Consensus 166 -ia~llyP~l~~~ 177 (334)
T COG2855 166 -LAMLLYPLLYPL 177 (334)
T ss_pred -HHHHHHHHHHHH
Confidence 444444444433
No 40
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=92.25 E-value=2.1 Score=49.86 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=42.8
Q ss_pred HHHhhHHHhHHhhhcCCHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHH
Q 009116 86 FIYLLPPIIFNAGFQVKKKQFFRN--FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (543)
Q Consensus 86 ~~~~Lp~IlF~aG~~l~~~~f~~~--~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~ 163 (543)
..+++|+-....|+++|.+.+... +..+..+.+++.+.-.+...+.. .+. ++++.+++.+|.++++---+.
T Consensus 324 ~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a-~~~------g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA-FFY------TMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCCHHHHHHHHHHHhcccHHH
Confidence 467888888899999999887532 22222222222222222222222 223 899999999999998876443
No 41
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=91.27 E-value=1.1 Score=42.42 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCC-----HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009116 54 TALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFVII 128 (543)
Q Consensus 54 ~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~-----~~~f~~~~~~il~la~~g~~i~~~~i 128 (543)
..+++|+++|.....- .... +-...+.|-.++|..|.++- .|++++..++++.+.+...+ ...+.
T Consensus 3 ~~li~Gi~lG~~~~~~--------~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIl-GSllg 72 (191)
T PF03956_consen 3 IALILGILLGYFLRPP--------FSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATIL-GSLLG 72 (191)
T ss_pred eeHHHHHHHHHHhccc--------cccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHH-HHHHH
Confidence 3567889998653311 1111 33567888889999999885 34556555677777765444 33555
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCCchhHHHHHHHHhhhhHHHHHHHHHHHH
Q 009116 129 SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQS 200 (543)
Q Consensus 129 ~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~ 200 (543)
+..+..++ ++++.+++..|+=..==+-.. ..+.|...|.+.++-+=.-++=+..++++.=.+..
T Consensus 73 g~l~~~ll------~~~~~~~lav~sG~GwYSlsg--~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 73 GLLASLLL------GLSLKESLAVASGFGWYSLSG--VLITQLYGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHh------cCCHHHHHHHHccCcHHHhHH--HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666 899999999887664322222 23445555666666655555666666666555555
No 42
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.44 E-value=4.3 Score=37.59 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=55.5
Q ss_pred cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCH---HHHHHhHHHHHHHHHHHHHH
Q 009116 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK---KQFFRNFMTIMLFGAVGTLI 123 (543)
Q Consensus 47 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~---~~f~~~~~~il~la~~g~~i 123 (543)
.++-.+.+.+++|+++|.+........+ .. .++.+.++.|..-++..|++--. +.++++..+...+++.-+++
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~---~~-~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~ 96 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLP---IS-APSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLV 96 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCC---cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3466677899999999976432211111 11 23446778888888888888764 45666766778788777777
Q ss_pred HHHHHHHHHHHHH
Q 009116 124 SFVIISAGAVHFF 136 (543)
Q Consensus 124 ~~~~i~~~~~~l~ 136 (543)
+.++.....++++
T Consensus 97 ~~~~~~~~~~~~~ 109 (169)
T PF06826_consen 97 PLLIALVIGRYLF 109 (169)
T ss_pred HHHHHHHHHHHHc
Confidence 7666555555454
No 43
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=88.98 E-value=6.1 Score=40.26 Aligned_cols=141 Identities=20% Similarity=0.278 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcC--CHHHHHHhHHHHHHHHHHHHHHHHH
Q 009116 49 MNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQV--KKKQFFRNFMTIMLFGAVGTLISFV 126 (543)
Q Consensus 49 lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l--~~~~f~~~~~~il~la~~g~~i~~~ 126 (543)
...++.+++.|+++|.+.. ..+ ...+-.|-.+ .|.-.|++.+.+-|+.- +.+++||..+....++++.-++...
T Consensus 176 ~~~sv~LLlGgliIG~~~g--~~g-~~~i~pf~~~-lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ 251 (327)
T PF05982_consen 176 TNKSVVLLLGGLIIGFLAG--PEG-VESIKPFFVD-LFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINAL 251 (327)
T ss_pred cCchHHHHHHHHHHhheeC--ccc-hhhccchhhc-cHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4557788888999996432 111 1111122223 56678888899999864 4668999999999999988888765
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhccc--C-CchhHHHH-HHHH-hhhhHHHHHHHHHHHH
Q 009116 127 IISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD--E-TPLLYSLV-FGEG-VVNDATSVVLFNAIQS 200 (543)
Q Consensus 127 ~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~--~-~~~l~~ll-~gEs-~lND~~aivlf~~~~~ 200 (543)
+.....+ ++ +++...+.+++.+.++-+=.++=+.++.. + +|-+|-.. .|-+ =+|=.++|.+|..+..
T Consensus 252 ig~~lg~-~~------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la~ 323 (327)
T PF05982_consen 252 IGIGLGW-LL------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALAQ 323 (327)
T ss_pred HHHHHHH-Hh------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHHH
Confidence 5444443 34 89999999999998877777777777643 1 34333221 1111 3666677776664443
No 44
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=88.91 E-value=28 Score=35.12 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=65.8
Q ss_pred hhHHHhHHhhhcCCHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHH
Q 009116 89 LLPPIIFNAGFQVKKKQFFRNFMT--IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQ 166 (543)
Q Consensus 89 ~Lp~IlF~aG~~l~~~~f~~~~~~--il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~ 166 (543)
.|..++|..|.+++.+++++..+. ....++. ....+.=+.++.+..-+ +. ...+..|.++.+.-|.++.+
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~---~~~vi~Plla~~l~~~~---~l--~~~~~~glvL~~~~P~~~~s 84 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLL---AQYGIMPLTGFLLAKVF---KL--PPELAVGVLIVGCCPGGTAS 84 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHH---HHHHHHHHHHHHHHHHh---CC--CHHHHHHHHheeeCCCchHH
Confidence 488899999999999999987762 2222222 22222222222221111 23 24455666665555555444
Q ss_pred hh-cc-c-CCchhHHHHHHHHhhhhHHHHHHHHHHHHhhhcc-cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 167 VL-NQ-D-ETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSH-IN---LSIALKFVGSFFYLFIASTMLGVIAGLLS 236 (543)
Q Consensus 167 il-~~-~-~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~-~~---~~~~~~~~~~~l~~~~~s~~~G~~~G~~~ 236 (543)
.. .+ . ++..+...+ ..++...+++..-....+..+. .+ ..+....+.+ +...+.-+++|..+-...
T Consensus 85 ~v~t~~~~gn~~la~~~---~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~ 157 (286)
T TIGR00841 85 NVFTYLLKGDMALSISM---TTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKL 157 (286)
T ss_pred HHHHHHhCCCHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 32 22 2 333333222 2455555555444333332221 11 1234445555 555556666665544433
No 45
>COG2431 Predicted membrane protein [Function unknown]
Probab=88.37 E-value=3.6 Score=40.69 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCC-----HHHHHHhHHHHHHHHHHHHHHHHH
Q 009116 52 SITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFV 126 (543)
Q Consensus 52 ~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~-----~~~f~~~~~~il~la~~g~~i~~~ 126 (543)
.++..+.|+++|.+..... . +++.-.++.|-.++|..|+++. .++..=| +..+.+++. ++++..
T Consensus 109 ~~~~vl~g~~~G~l~~~~~--------~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i-~ilssl 177 (297)
T COG2431 109 LLGVVLLGLALGLLTGSFL--------N-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFI-TLLSSL 177 (297)
T ss_pred HHHHHHHHHHHHHHhcccc--------c-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHH-HHHHHH
Confidence 4566777888886544221 1 2334556788889999999988 2233333 334455543 445556
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHhcccc
Q 009116 127 IISAGAVHFFKQMNIGTLKIGDYLAIGAIFA 157 (543)
Q Consensus 127 ~i~~~~~~l~~~~~~~~l~~~~alllGails 157 (543)
+.|....+++ ++|+.+++.+++=..
T Consensus 178 iGG~iaa~~l------~lpl~~~lAmasG~G 202 (297)
T COG2431 178 IGGLIAAFLL------DLPLTTGLAMASGFG 202 (297)
T ss_pred HHHHHHHHHH------hccHHHHHHHHhccc
Confidence 6677666666 889988888776553
No 46
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=87.25 E-value=6.3 Score=41.84 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=47.5
Q ss_pred HHH-HhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHH
Q 009116 85 FFI-YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSV 162 (543)
Q Consensus 85 ~~~-~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv 162 (543)
+.+ +++|+--...|.++|.+.+.+++..++.+....++.-.......++ .+ +++...++..|..+++.-..
T Consensus 273 ~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~-~~------g~~~~~~~~~g~~~~~~ge~ 344 (397)
T COG0475 273 FGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAAR-LL------GFSKRLALGIGLLLRQGGEF 344 (397)
T ss_pred HHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-HH------cCcHHHHHHHHhhhhhhhHH
Confidence 667 8888888899999999999999988665555444443333322222 22 66777777777766554333
No 47
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=86.91 E-value=40 Score=34.73 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=71.0
Q ss_pred HhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHh
Q 009116 88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (543)
Q Consensus 88 ~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~i 167 (543)
+++..++|--|.+++.++|+|..++--.. ..+.+.++.+.=+.++.+-.-+ . +.+ ..+..|-++.+.-|..+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~-~~~~~~qfvi~Plla~~l~~l~-~-~~~--p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGL-ILSLFINWIIGPFLMFLLAWLF-L-RDL--FEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHH-c-CCC--HHHHHHHHHHHhcchHHHHH
Confidence 34557899999999999999877752221 1233344444333333321111 0 222 33556655555555554443
Q ss_pred h-cc--cCCchhHHHHHHHHhhhhHHHHHHHHHHHHhhhc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 168 L-NQ--DETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLS--------HINLSIALKFVGSFFYLFIASTMLGVIAGLLS 236 (543)
Q Consensus 168 l-~~--~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~ 236 (543)
. .. .++..+.. .-..+|...+++++-....+..+ .....+....+.+.+...+.-+++|...-...
T Consensus 122 v~T~lAkGnvalsv---~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~ 198 (328)
T TIGR00832 122 VWNQLAKGDPEYTL---VLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWL 198 (328)
T ss_pred HHHHHcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 21 12222221 12367777777666433322111 00123445556677777777777777555443
No 48
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=86.41 E-value=45 Score=34.76 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAI 152 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alll 152 (543)
|.++..+-++--+=+.+|++.+-|.........+.|++... .++...-.++ +.++.+.+++
T Consensus 112 FL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~-~~g~lVG~~~------G~~~~d~~m~ 172 (438)
T COG3493 112 FLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAA-AVGILVGLLF------GLSFQDTMMY 172 (438)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHh------CCChHHeeee
Confidence 77888888999999999999999988877766666766543 3344444455 8888887765
No 49
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=85.78 E-value=51 Score=34.77 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 009116 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (543)
Q Consensus 47 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~ 126 (543)
+++|..+..++.|+++...... .++..++. -+.+..+.+|.-++.-=++.|.|+.+|..++.+..=+.+++ ..+
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli-~~p~~s~~----y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~-g~v 96 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLI-DSPASSPV----YDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAV-GTV 96 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCc-CCCCcchH----HHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHH-HHH
Confidence 5688888888888888875332 11112222 24467788888888888899999999998875544334433 333
Q ss_pred HHHHHHHHHHhhc
Q 009116 127 IISAGAVHFFKQM 139 (543)
Q Consensus 127 ~i~~~~~~l~~~~ 139 (543)
+.+...+.+++..
T Consensus 97 iG~~va~~l~~~~ 109 (378)
T PF05684_consen 97 IGAVVAFLLFGGF 109 (378)
T ss_pred HHHHHHHHHHhhc
Confidence 3445556666543
No 50
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=85.74 E-value=36 Score=32.98 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccc--cCCCHHHHHHhhc
Q 009116 92 PIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF--AATDSVCTLQVLN 169 (543)
Q Consensus 92 ~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGail--saTDpv~v~~il~ 169 (543)
..-|..-+.=+++.+||||++++.-.+.|.+.+.......+.++ +++-. +.-+++ |.|.|.+ +.+-+
T Consensus 72 tVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~-------g~~~~---~~~Sl~PkSvTTpiA-m~vs~ 140 (230)
T COG1346 72 TVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF-------GLSPE---LILSLLPKSVTTPIA-MEVSE 140 (230)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHH---HHHHhcccccccHHH-HHHHH
Confidence 34455556667899999999999888888887655544444332 33322 222333 5666666 45555
Q ss_pred ccC-Cchh
Q 009116 170 QDE-TPLL 176 (543)
Q Consensus 170 ~~~-~~~l 176 (543)
+.+ .|.+
T Consensus 141 ~iGGip~l 148 (230)
T COG1346 141 SIGGIPAL 148 (230)
T ss_pred hcCCchHH
Confidence 553 5544
No 51
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=85.60 E-value=15 Score=37.29 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=41.8
Q ss_pred hhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh
Q 009116 89 LLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG 153 (543)
Q Consensus 89 ~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllG 153 (543)
.+|...|.-|.+++.++..+...+.+.+++..++.+... +....-++ +.+-..+.+.|
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~-~~~i~rll------g~~~~~g~li~ 254 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF-NIFADRLV------GGTGIAGAAAS 254 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHh------CCChhHHHHHH
Confidence 778889999999999999999999888888777665433 22222233 55555666666
No 52
>PRK03818 putative transporter; Validated
Probab=83.51 E-value=10 Score=42.07 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhHHhhhcCCHH---HHHHhHHHHHHHHHHHHHHHH
Q 009116 52 SITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVKKK---QFFRNFMTIMLFGAVGTLISF 125 (543)
Q Consensus 52 ~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~~~Lp~IlF~aG~~l~~~---~f~~~~~~il~la~~g~~i~~ 125 (543)
..+.+++|+++|.+.. ... ..+++ +.+..+.|..-+|..|++.-.+ .++++..+...++++.++...
T Consensus 33 ~~g~L~~gl~~G~~~~----~~~---~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~ 105 (552)
T PRK03818 33 IGGVLFGGIIVGHFVS----QFG---LTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGG 105 (552)
T ss_pred cHHHHHHHHHHhcccc----ccC---cccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4788888999885321 001 11222 2355788888889999988744 555555566667766666554
Q ss_pred HHHHHHHHHHH
Q 009116 126 VIISAGAVHFF 136 (543)
Q Consensus 126 ~~i~~~~~~l~ 136 (543)
++ ++..++++
T Consensus 106 ~~-~~~~~~~~ 115 (552)
T PRK03818 106 LV-TAILHKLF 115 (552)
T ss_pred HH-HHHHHHHh
Confidence 44 45555555
No 53
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=83.45 E-value=34 Score=35.13 Aligned_cols=107 Identities=11% Similarity=0.018 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhH
Q 009116 31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF 110 (543)
Q Consensus 31 ~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~ 110 (543)
.++..+. .+.++.++.++|.. .++..++.+.......... ..+ |+.+...+...+=...|.+++.+.+++..
T Consensus 159 ~l~~~~~-~g~~l~~~l~iPa~--~llGpml~~a~~~~~~~~~----~~~-P~~l~~~aqv~iG~~iG~~f~~~~l~~~~ 230 (318)
T PF05145_consen 159 LLALAAL-AGGLLARRLRIPAP--WLLGPMLVSAILNLFGGPS----FSL-PPWLVNAAQVLIGASIGSRFTRETLRELR 230 (318)
T ss_pred HHHHHHH-HHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhCCC----CCC-CHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3333444 44444444557643 3334444433333221111 222 45566677777788899999987776655
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 009116 111 MTIM--LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (543)
Q Consensus 111 ~~il--~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~all 151 (543)
+.+. .......+..++..+...+.+. ++++.++++
T Consensus 231 ~~~~~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L 267 (318)
T PF05145_consen 231 RLLPPALLSTLLLLALCALFAWLLSRLT------GIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 4322 1222222333344444444444 777776654
No 54
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=82.81 E-value=9 Score=42.62 Aligned_cols=122 Identities=13% Similarity=0.171 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHH---H
Q 009116 33 LCACIVIGHLLEEN----RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---Q 105 (543)
Q Consensus 33 l~~~~~~~~~l~~~----~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~---~ 105 (543)
+++++.+|+++-|. ..+-.+.+.+++|+++|-+. ..+++ .+..++|.+-+|..|++.-++ .
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g-----------~~i~~-~v~~~gl~lFvy~vG~~~Gp~Ff~~ 82 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLG-----------IQIDP-GVKAVFFALFIFAIGYEVGPQFFAS 82 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcC-----------CCCCh-HHHHHHHHHHHHHhhhccCHHHHHH
Confidence 44455566666552 23555678899999999531 12233 366788888999999999855 4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhccc
Q 009116 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD 171 (543)
Q Consensus 106 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~ 171 (543)
+||+..+...++++.++.. +++++...+++ |+ +.+....++-||.-+...-.++...+++.
T Consensus 83 l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~---g~-~~~~~~Gl~aGalT~tp~l~aA~~a~~~~ 143 (562)
T TIGR03802 83 LKKDGLREIILALVFAVSG-LITVYALAKIF---GL-DKGTAAGLAAGGLTQSAVIGTAGDAIEKL 143 (562)
T ss_pred HHhccHHHHHHHHHHHHHH-HHHHHHHHHHh---CC-CHHHHHHHHhchhhccHHHHHHHHHHHhc
Confidence 4555445666665555544 33344444444 22 33455556666665544445555555443
No 55
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=82.33 E-value=73 Score=33.85 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=26.5
Q ss_pred cccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHH
Q 009116 78 LMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTL 122 (543)
Q Consensus 78 ~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~ 122 (543)
..+|.+. ...++.+.--..|+.-+.+.+||-.++...+.....+
T Consensus 59 ~~fd~~l-~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~ 102 (398)
T TIGR00210 59 VNFDFSL-RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVG 102 (398)
T ss_pred EEcChhH-HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHH
Confidence 4556552 2333322333567788888899988887766655433
No 56
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=82.24 E-value=61 Score=32.96 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=76.0
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH--HHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHH
Q 009116 43 LEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF--IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120 (543)
Q Consensus 43 l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~--~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g 120 (543)
.++..|+|-- .+++=+++|..+.-+.++.....=.|.+.++- ...+...+|-.|-++|.|+..+..++-..+-+.=
T Consensus 4 ~~~i~kiPGG--~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K 81 (314)
T PF03812_consen 4 KKTIEKIPGG--MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVK 81 (314)
T ss_pred hHhhccCCCc--eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHH
Confidence 3444567743 44455566655443332211101112222221 3456667999999999999888888766666555
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-C-CCHHHHHHHhccccCCCHHHHHHhhcccCCc
Q 009116 121 TLISFVIISAGAVHFFKQMNIG-T-LKIGDYLAIGAIFAATDSVCTLQVLNQDETP 174 (543)
Q Consensus 121 ~~i~~~~i~~~~~~l~~~~~~~-~-l~~~~alllGailsaTDpv~v~~il~~~~~~ 174 (543)
+++. +++++....+++.-|+. + +--..++.+=+.++.+.+..=.++.+|++.+
T Consensus 82 ~~~~-~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~ 136 (314)
T PF03812_consen 82 FIIG-ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE 136 (314)
T ss_pred HHHH-HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH
Confidence 5554 44455555555433220 0 1224567777888889999888888888765
No 57
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=81.79 E-value=41 Score=30.60 Aligned_cols=105 Identities=11% Similarity=-0.046 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHH
Q 009116 33 LCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMT 112 (543)
Q Consensus 33 l~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~ 112 (543)
+.++.+.+.++++ .++|. +.++..++.+.......... .. -|+.+.......+=...|.+++.+.+++-.+.
T Consensus 4 ~~~~~~~g~l~~~-l~~Pa--~~llG~mi~~~~~~~~~~~~----~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~ 75 (156)
T TIGR03082 4 LLVGLAGGLLASL-LGLPA--AWLLGPLLAGAVLSLAGGLE----IT-LPPWLLALAQVVIGILIGSRFTREVLAELKRL 75 (156)
T ss_pred HHHHHHHHHHHHH-HCCCc--HHHHHHHHHHHHHHhcCCcc----CC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3445555556554 45664 33444444444333221111 12 23446677777788899999998776655543
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 009116 113 IML--FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (543)
Q Consensus 113 il~--la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~all 151 (543)
... .....++..++..+...+.+. ++++.++++
T Consensus 76 ~~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~L 110 (156)
T TIGR03082 76 WPAALLSTVLLLALSALLAWLLARLT------GVDPLTAFL 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 222 222233333333343333333 788888854
No 58
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=81.74 E-value=4 Score=39.38 Aligned_cols=80 Identities=9% Similarity=-0.019 Sum_probs=63.7
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v 164 (543)
...+.+-++.-++|+++++|.+++.......+++....+.+..-+...+++. +.+|.++++.|.++.+..+...
T Consensus 159 l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~~ 232 (252)
T KOG3826|consen 159 LRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRFP 232 (252)
T ss_pred hhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCCc
Confidence 3456677788899999999999999888888888877777666666666665 7899999999999998888766
Q ss_pred HHhhcc
Q 009116 165 LQVLNQ 170 (543)
Q Consensus 165 ~~il~~ 170 (543)
-+-...
T Consensus 233 r~~~~h 238 (252)
T KOG3826|consen 233 RPDYQH 238 (252)
T ss_pred cccchh
Confidence 555443
No 59
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=81.49 E-value=49 Score=33.75 Aligned_cols=165 Identities=19% Similarity=0.172 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHH----HhhcchhHHHHHHHHHhcc-ccccccccchhHHHHHHHHHHH-HHHhHHHHHhhcccccc
Q 009116 254 VALMILMAYLSYMLAE----LFYLSGILTVFFCGIVMSH-YTWHNVTESSRVTTKHAFATLS-FVAEIFIFLYVGMDALD 327 (543)
Q Consensus 254 ~~l~l~~~~l~y~~Ae----~~~~SGilav~~~Gl~~~~-~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~Fv~lG~~~~~ 327 (543)
..++++++..+|.+++ .-+.+..+-+.+.|+.++| ... .++ ..+.-.+..+ .+++.-+ +++|..+..
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~--~~~----~~~~Gi~~~~k~~Lr~gI-VLlG~~l~~ 75 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFG--LPA----RFKPGIKFSSKKLLRLGI-VLLGFRLSF 75 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccC--CcH----HHHhHHHHHHHHHHHHHH-HHHCccccH
Confidence 3567788888888888 3688999999999999998 321 111 1222222222 3444444 778888754
Q ss_pred cchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhcc
Q 009116 328 IEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTS 407 (543)
Q Consensus 328 ~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~ 407 (543)
.+..+.- ...+ +....+. ..++...++... +..|.+.+....++-+- .--.++.+.|.....+
T Consensus 76 ~~i~~~G----~~~~----~~~~~~v----~~~~~~~~~lg~----r~~~l~~~~~~Lia~Gt-sICG~SAi~A~a~~i~ 138 (305)
T PF03601_consen 76 SDILALG----WKGL----LIIIIVV----ILTFLLTYWLGR----RLFGLDRKLAILIAAGT-SICGASAIAATAPVIK 138 (305)
T ss_pred HHHHHhC----ccHH----HHHHHHH----HHHHHHHHHHHH----HHhCCCHHHHHHHHhhc-ccchHHHHHHHccccc
Confidence 3322110 0011 1111111 111111111110 12378888888888765 4555666666554322
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCC
Q 009116 408 SGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSS 449 (543)
Q Consensus 408 ~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~ 449 (543)
.. .++. ..++..+.++.++- =...|.+.++++..+
T Consensus 139 a~-----~~~~-a~ava~V~lfg~va-m~~~P~l~~~l~l~~ 173 (305)
T PF03601_consen 139 AK-----EEDV-AYAVATVFLFGTVA-MFLYPLLGHALGLSP 173 (305)
T ss_pred CC-----CCce-eeeehHHHHHHHHH-HHHHHHHHHHhCCCH
Confidence 21 1222 22222333333322 233566666676653
No 60
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=81.19 E-value=28 Score=36.85 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhc-C
Q 009116 23 VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ-V 101 (543)
Q Consensus 23 ~~~i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~-l 101 (543)
...+..-..+.+....+|.++++...+|.....++.=+++=.. +..+.+-++-...-.+.+...+.+++++-.|.. +
T Consensus 245 ~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~--~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~ 322 (414)
T PF03390_consen 245 FSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF--GLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYT 322 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3344444455666777888888877888888776654444321 122111111011112446678899999999999 9
Q ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CHHHHHHHhcccc---CCCHHHHHHhhcccC-Cc--
Q 009116 102 KKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTL-KIGDYLAIGAIFA---ATDSVCTLQVLNQDE-TP-- 174 (543)
Q Consensus 102 ~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l-~~~~alllGails---aTDpv~v~~il~~~~-~~-- 174 (543)
|++++.+.+.....+-+..+++...+.+...-.++ ++ |...|+.-|-+.+ -|-=+++++--++.+ .|
T Consensus 323 ~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~------g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpFA 396 (414)
T PF03390_consen 323 DLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV------GFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPFA 396 (414)
T ss_pred cHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHhhhcccCCCCCCcchheehhhhcccccHH
Confidence 99999998876665555566655555554443444 44 4444444442433 344445555555544 33
Q ss_pred hhHHHHHH
Q 009116 175 LLYSLVFG 182 (543)
Q Consensus 175 ~l~~ll~g 182 (543)
++.+.+=|
T Consensus 397 QIstRiGG 404 (414)
T PF03390_consen 397 QISTRIGG 404 (414)
T ss_pred HHHHhhhh
Confidence 44444433
No 61
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=80.82 E-value=33 Score=30.76 Aligned_cols=110 Identities=11% Similarity=-0.023 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhHHhhhcCC
Q 009116 24 VSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVK 102 (543)
Q Consensus 24 ~~i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~~~Lp~IlF~aG~~l~ 102 (543)
..+...+++++.+..+|..+.+...+|-+.. ++|+++=...+..-..+. +..+-..+.+. ++.+-++=--.|.=..
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGs--ViGMlLL~l~L~~~~vk~-~~v~~~a~~LL~~m~LfFVPagVGim~~ 83 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPAS--VIGLVLLFVLLCTKVVKL-EQVESLGTALTNNIGFLFVPSGISVINS 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHhCCcCH-HHHHHHHHHHHHHHHHHHhhhHhHHHHh
Confidence 3455566778888889999988544432221 233333222222211111 11222222221 2222122224566677
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (543)
Q Consensus 103 ~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 136 (543)
.+.+++++.+++...+++|++..+++|....++.
T Consensus 84 ~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 84 LGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988777776665544
No 62
>COG2855 Predicted membrane protein [Function unknown]
Probab=79.35 E-value=34 Score=35.13 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=71.9
Q ss_pred HHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccchhhhccCCCCchHHHHHHH
Q 009116 269 ELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAIL 348 (543)
Q Consensus 269 e~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~ 348 (543)
+..|++...=+...|++++++.++. ++...-++ |.+ ..+++.-+ ++.|+.+...+.-+. -... +.+
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~--~~~~~GI~-fs~--k~LLr~gI-vLlG~~ltl~~i~~~----G~~~----v~~ 98 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIP--AQTSAGIT-FSS--KKLLRLGI-VLLGFRLTLSDIADV----GGSG----VLI 98 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccch--hhhccchh-hhH--HHHHHHHH-HHHcceeeHHHHHHc----CccH----HHH
Confidence 3456678888899999999765332 11111111 110 12344333 678888754331111 0011 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhccCCCccchhhHHHHHHHHHHHH
Q 009116 349 LGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVL 428 (543)
Q Consensus 349 ~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl 428 (543)
.+.++..=++..+. .... -+.|+|....++-+--.=|+ +.+.|..+..+ .+.+|. ..++..+++
T Consensus 99 ~~~~l~~t~~~~~~----lg~~-----lgld~~~a~Lia~GssICGa-sAiaA~~pvik-----a~~~ev-a~aIa~V~l 162 (334)
T COG2855 99 IAITLSSTFLFAYF----LGKL-----LGLDKKLALLIAAGSSICGA-SAIAATAPVIK-----AEEEEV-AVAIAVVVL 162 (334)
T ss_pred HHHHHHHHHHHHHH----HHHH-----hCCCHHHHHHHHccchhhHH-HHHHHhCCcCC-----CCcccc-ceehhhHHH
Confidence 22223333333322 2221 28899999988875423444 44445443321 122333 333444555
Q ss_pred HHHhhhhhhHHHHHHHhCCCC
Q 009116 429 FSTVVFGLMTQPLVRILLPSS 449 (543)
Q Consensus 429 ~T~~v~g~~~~~l~~~l~~~~ 449 (543)
+.++. -..-|.+..++....
T Consensus 163 fgtia-~llyP~l~~~l~l~~ 182 (334)
T COG2855 163 FGTLA-MLLYPLLYPLLGLSP 182 (334)
T ss_pred HHHHH-HHHHHHHHHHhCCCc
Confidence 55543 344677777777544
No 63
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=78.90 E-value=62 Score=33.48 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHH-----hhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhccccccc
Q 009116 254 VALMILMAYLSYMLAEL-----FYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI 328 (543)
Q Consensus 254 ~~l~l~~~~l~y~~Ae~-----~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~ 328 (543)
..+++.+++.++++++. .+++..+-+...|++++|....+.++..+.-.+ |. -..+++.-+ +++|..+...
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~--~k~lLr~gI-VLlG~~l~~~ 82 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FA--KPFLLRIGI-TLYGFRLTFP 82 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HH--HHHHHHHHH-HHHCccccHH
Confidence 45567777788888775 478889989999999998431111111111111 11 112444444 7788887543
Q ss_pred c
Q 009116 329 E 329 (543)
Q Consensus 329 ~ 329 (543)
+
T Consensus 83 ~ 83 (335)
T TIGR00698 83 Y 83 (335)
T ss_pred H
Confidence 3
No 64
>PRK04972 putative transporter; Provisional
Probab=78.70 E-value=27 Score=38.85 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhHHhhhcCC---
Q 009116 33 LCACIVIGHLLEEN----RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVK--- 102 (543)
Q Consensus 33 l~~~~~~~~~l~~~----~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~~~Lp~IlF~aG~~l~--- 102 (543)
+++..++|.+--.. ..+-...+.+++|+++|.+-...+ ....+++ ..+..+.|..-+...|++--
T Consensus 390 i~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f 464 (558)
T PRK04972 390 FIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHP-----TFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGI 464 (558)
T ss_pred HHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCC-----CceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 34445555443222 234456788999999996432111 1112222 23556777666666666544
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccc-cCCCHHHHHHhhccc
Q 009116 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLNQD 171 (543)
Q Consensus 103 ~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGail-saTDpv~v~~il~~~ 171 (543)
.+.++++..+.+..++..++++.++..+..++++ ++++. .+.|++- +-|+|.+.-...+..
T Consensus 465 ~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~------k~~~~--~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 465 NNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL------RMNRA--LLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCHH--HHHHHHhCCCCCcHHHHHHHhhc
Confidence 3456666777888888888888777667776766 66666 5667665 456666654444433
No 65
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=78.47 E-value=87 Score=32.88 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHH----h-ccccchHHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhHHhhhcCCH
Q 009116 32 LLCACIVIGHLLE----E-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVKK 103 (543)
Q Consensus 32 ll~~~~~~~~~l~----~-~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~~~Lp~IlF~aG~~l~~ 103 (543)
++..+..+|+++. + ...+|.-+..+++|+++-.+....... +.|. +.+....|-..+..+=..+|.
T Consensus 225 ~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~------~id~~~i~~I~~~sL~~fl~~almsl~l 298 (368)
T PF03616_consen 225 LILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKY------KIDRKTIDRISGISLDLFLAMALMSLKL 298 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcc------cCCHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3344444444443 3 345788777788888777655432211 1333 335567777788888889999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 009116 104 KQFFRNFMTIMLFGAVGTLISFVI 127 (543)
Q Consensus 104 ~~f~~~~~~il~la~~g~~i~~~~ 127 (543)
..+.++..+++.+-+.++++..+.
T Consensus 299 ~~l~~~a~Plliil~~q~i~~~~f 322 (368)
T PF03616_consen 299 WVLADYALPLLIILAVQTILMVLF 322 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877888766544
No 66
>PRK01658 holin-like protein; Validated
Probab=71.73 E-value=68 Score=27.97 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhHHhhhcC
Q 009116 25 SMNLFVALLCACIVIGHLLEENRW--MNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQV 101 (543)
Q Consensus 25 ~i~l~~~ll~~~~~~~~~l~~~~~--lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~~~Lp~IlF~aG~~l 101 (543)
.++..+++++.+..+|+.+.+... +|.++ +|+++=...+..-..+. ++.+-..+.+. +..+-++=--.|.=-
T Consensus 5 ~~l~~l~il~~~~~~G~~i~~~l~lpiPGsV----iGmlLL~~~L~~~~ik~-~~v~~~a~~Ll~~m~llFVPa~VGi~~ 79 (122)
T PRK01658 5 KLLVQIALLYVFALVGTWIQEQLHLPIPGSI----IGIFLLLLLLSFKILKL-KWIELGAETLLAELPLFFIPSAVGVMN 79 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHHhCCcCH-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345556778888889999988544 44433 34433222222211111 11222222222 222211212456666
Q ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 102 KKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (543)
Q Consensus 102 ~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 136 (543)
..+.+++++.+++...+.+|++...++|....++.
T Consensus 80 ~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 80 YGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998888776665544
No 67
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=71.67 E-value=1.1e+02 Score=31.17 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH---HHhhHHHhHHhhhcCCHHHHHHhHHHHHHH
Q 009116 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF---IYLLPPIIFNAGFQVKKKQFFRNFMTIMLF 116 (543)
Q Consensus 47 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~---~~~Lp~IlF~aG~~l~~~~f~~~~~~il~l 116 (543)
+|+|-- .+++=+++|..+.-+.++. .++=.|.+.+|- .-.+...+|-.|-++|.|.-.+..++-..+
T Consensus 8 ~kiPgg--~m~vPl~lga~inTf~P~~-l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l 77 (312)
T PRK12460 8 KKIPGG--MMVVPLLIGALINTFFPQA-LEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL 77 (312)
T ss_pred ccCCCc--eeHHHHHHHHHHHhccCcc-hhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhh
Confidence 457753 3344444554433322211 122233444332 234556689999999988866665554443
No 68
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=71.34 E-value=68 Score=33.28 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhc-CC
Q 009116 24 VSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ-VK 102 (543)
Q Consensus 24 ~~i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~-l~ 102 (543)
..+..-..+.+....+|.+++....+|.....+++|+++-.. ++.+.+..+--.-..+++...+.++++.-.|+. +|
T Consensus 179 ~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~--gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~ 256 (347)
T TIGR00783 179 KLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAF--GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYID 256 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 334434445566666777776444578888888887776643 222111111011111335566788888888987 89
Q ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CHHHHHHHhcccc---CCCHHHHHHhhcccC
Q 009116 103 KKQFFRNF-MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTL-KIGDYLAIGAIFA---ATDSVCTLQVLNQDE 172 (543)
Q Consensus 103 ~~~f~~~~-~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l-~~~~alllGails---aTDpv~v~~il~~~~ 172 (543)
++++.+.+ .+.+.+.+.+++ ...+.+...-.++ ++ |...|+.-|-+.+ -|-=+++++--++.+
T Consensus 257 l~~L~~a~t~~~vviiv~~Vl-g~ii~s~lvGKll------G~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 257 LDDLVAALSWQFVVICLSVVV-AMILGGAFLGKLM------GMYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred HHHHHHHhchhHhhhHHHHHH-HHHHHHHHHHHHh------CCChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 99999988 555444444443 2233332222333 43 5555555553433 344444455545444
No 69
>PRK05326 potassium/proton antiporter; Reviewed
Probab=70.66 E-value=29 Score=38.68 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=20.7
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLF 116 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~l 116 (543)
+..++.|++-+..|+.++.+.+.+.....+.+
T Consensus 275 l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i 306 (562)
T PRK05326 275 LAWLAQIGMFLVLGLLVTPSRLLDIALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556666667788888888777555444433
No 70
>PRK04972 putative transporter; Provisional
Probab=69.45 E-value=36 Score=37.88 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHh----ccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHH---H
Q 009116 33 LCACIVIGHLLEE----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---Q 105 (543)
Q Consensus 33 l~~~~~~~~~l~~----~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~---~ 105 (543)
+++++.+|.++-| ...+-.+.+.+++|+++|.+.. ..++ ....++|.+-+|..|++.-.+ .
T Consensus 17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~-----------~~~~-~~~~~gl~lF~~~vG~~~Gp~F~~~ 84 (558)
T PRK04972 17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHF-----------SINT-DALNLGFMLFIFCVGVEAGPNFFSI 84 (558)
T ss_pred HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCC-----------CCCh-HHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3344445555554 2346667789999999996311 1222 245678888888899887744 5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 009116 106 FFRNFMTIMLFGAVGTLISFVI 127 (543)
Q Consensus 106 f~~~~~~il~la~~g~~i~~~~ 127 (543)
++++..+...++++.+++..++
T Consensus 85 l~~~g~~~~~~~~~~~~~~~~~ 106 (558)
T PRK04972 85 FFRDGKNYLMLALVMVGSALVI 106 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 5555556666666666555433
No 71
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=67.97 E-value=32 Score=25.82 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=33.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 009116 18 SDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVI 66 (543)
Q Consensus 18 ~~~~~~~~i~l~~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~ 66 (543)
.++.-+.++.+..++..++..+++.+.+ .++|.+..++++|+++..+.
T Consensus 9 ~~ngLitaFa~vG~~m~~S~~lS~~LT~-GrihGSAIAI~lGLvLAy~G 56 (60)
T PF03818_consen 9 TKNGLITAFAVVGIIMWVSYWLSKKLTR-GRIHGSAIAIVLGLVLAYIG 56 (60)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHc
Confidence 3444555565666666666666766665 45999999999999998653
No 72
>PRK03818 putative transporter; Validated
Probab=67.28 E-value=50 Score=36.71 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccccC---hhHHHHHhhHHHhHHhhhcCCHH---HHHH-hHHHHHHHHHHHHHHH
Q 009116 52 SITALIIGLCTGIVILLTTNGTSSHVLMFS---EDLFFIYLLPPIIFNAGFQVKKK---QFFR-NFMTIMLFGAVGTLIS 124 (543)
Q Consensus 52 ~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~---~~~~~~~~Lp~IlF~aG~~l~~~---~f~~-~~~~il~la~~g~~i~ 124 (543)
..+.+++|+++|.+-... + ....+. +..+..+.|.+-+...|++--.+ .+++ .+...+.++++.++++
T Consensus 403 ~~G~L~~gl~~g~~~~~~---~--~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGRIGSIG---K--LYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHhccCCC---C--ceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 567899999999642211 0 001111 12355678877777777766543 3333 3455667777777766
Q ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHhccc-cCCCHHHHHHh
Q 009116 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQV 167 (543)
Q Consensus 125 ~~~i~~~~~~l~~~~~~~~l~~~~alllGail-saTDpv~v~~i 167 (543)
.++.....++++ ++++. .+.|++- +-|+|.+.-..
T Consensus 478 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 478 LLIVGILARMLA------KMNYL--TLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHH------cCCHH--HHHHHHhccCCCcHHHHHH
Confidence 655555556666 66655 5667665 44555554333
No 73
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=67.14 E-value=72 Score=34.44 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=12.6
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 009116 183 EGVVNDATSVVLFNAIQS 200 (543)
Q Consensus 183 Es~lND~~aivlf~~~~~ 200 (543)
-+.++|.+++++|-.+..
T Consensus 427 itt~~D~~g~~~~~~~a~ 444 (449)
T TIGR00400 427 ITTIADALTLIIYFNIAK 444 (449)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346789888877765544
No 74
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=66.19 E-value=70 Score=35.65 Aligned_cols=106 Identities=22% Similarity=0.166 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCccccccChh---HHHHHhhHHHhHHhhhcCCH---HHHHHhHHHHHHHHHHHHHHH
Q 009116 51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSED---LFFIYLLPPIIFNAGFQVKK---KQFFRNFMTIMLFGAVGTLIS 124 (543)
Q Consensus 51 ~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~---~~~~~~Lp~IlF~aG~~l~~---~~f~~~~~~il~la~~g~~i~ 124 (543)
-..+.+++|+++|.+....+ ....+++. .+.++.|..-++..|++--. +.++++..+.+.++++-++++
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHP-----TFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred hhHHHHHHHHHHHHhcccCC-----cceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45677888888886422111 11122332 35567887777888877664 456666677777777777777
Q ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHhccc-cCCCHHHHHHhhc
Q 009116 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLN 169 (543)
Q Consensus 125 ~~~i~~~~~~l~~~~~~~~l~~~~alllGail-saTDpv~v~~il~ 169 (543)
.++..+..++++ ++++. .+.|++- +-|+|.+.-...+
T Consensus 492 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~~ 529 (562)
T TIGR03802 492 LIITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVLE 529 (562)
T ss_pred HHHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHHH
Confidence 666555665555 56654 5666665 4455555434333
No 75
>PRK01821 hypothetical protein; Provisional
Probab=65.78 E-value=98 Score=27.47 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhHHhhhc
Q 009116 24 VSMNLFVALLCACIVIGHLLEENRW--MNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQ 100 (543)
Q Consensus 24 ~~i~l~~~ll~~~~~~~~~l~~~~~--lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~~~Lp~IlF~aG~~ 100 (543)
+.+...+++++.+..+|..+.+... +|.++ +|+++=...+.....+. ++.+-..+.+. +..+-++=--.|.=
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsV----iGmlLLf~~L~~~~vk~-~~v~~~a~~LL~~m~LfFVPa~VGim 83 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSI----IGMLILFVLLALQILPA-KWVKPGCSLLIRYMALLFVPIGVGVM 83 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHHHHhCCcCH-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445556777788888999888544 44433 33333222222211111 12222223222 22222222245555
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 101 VKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (543)
Q Consensus 101 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 136 (543)
-..+.+++++.+++...+++|++..+++|....++.
T Consensus 84 ~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 84 QYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999988777776665543
No 76
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=65.24 E-value=1.9e+02 Score=30.69 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhc-----cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHH
Q 009116 31 ALLCACIVIGHLLEEN-----RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ 105 (543)
Q Consensus 31 ~ll~~~~~~~~~l~~~-----~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~ 105 (543)
.++..+..+|+.+.+. ..+|.-...++.|+++-.+.......+ ..+-.-+.+....|-..+-.+=.++|..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~---~~~~~i~~I~~~sLdlfl~~AlmsL~L~~ 298 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPW---VAERAVSVIGNVSLSLFLAIALMSLQLWE 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 4455555556555542 348888888888888887654332111 11111133566777777888888999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCH--HHHHHHhccccCCCHHHH--HHhhcccCCc-hhHHHH
Q 009116 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKI--GDYLAIGAIFAATDSVCT--LQVLNQDETP-LLYSLV 180 (543)
Q Consensus 106 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~--~~alllGailsaTDpv~v--~~il~~~~~~-~l~~ll 180 (543)
+.+++.+++.+.+.+++++.+..-+.++-.+ |. +++- ..|-..|--+.+|-.+.+ -++-++++.. +-+-++
T Consensus 299 l~~~a~Plliil~~q~i~~~l~~~fv~fr~m---g~-~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~iv 374 (398)
T TIGR00210 299 LADLAGPIALILLVQVMFMALYAIFVTFRLM---GK-DYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVV 374 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhc---cc-hHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehh
Confidence 9999999999999999988655444443333 22 2221 122245555655554443 3556677643 432222
Q ss_pred -HHHHhhhhHHHHHHH
Q 009116 181 -FGEGVVNDATSVVLF 195 (543)
Q Consensus 181 -~gEs~lND~~aivlf 195 (543)
.--+.+-|.+-..+-
T Consensus 375 Plvgaf~id~~n~~~i 390 (398)
T TIGR00210 375 PLVGAFFIDIINALVI 390 (398)
T ss_pred hhHHHHHHHHhhHHHH
Confidence 234455665544433
No 77
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=64.33 E-value=97 Score=28.22 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCCCccccccC---hhHHHHHhhHHHhHHhhhcCCHH---HHHHhH-HHHHHHHHHHH
Q 009116 49 MNESITALIIGLCTGIVILLTTNGTSSHVLMFS---EDLFFIYLLPPIIFNAGFQVKKK---QFFRNF-MTIMLFGAVGT 121 (543)
Q Consensus 49 lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~---~~~~~~~~Lp~IlF~aG~~l~~~---~f~~~~-~~il~la~~g~ 121 (543)
+-...+.+++|+++|.+... .+. ...++ ++.+.++.|..-++..|++--.+ .++++. ...+..+.+.+
T Consensus 21 LG~~~G~L~vgL~~G~~~~~--~p~---~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~ 95 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGAT--GPL---TWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALIT 95 (154)
T ss_pred ecccHHHHHHHHHHHhcccc--CCc---ceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 33467889999999964210 000 11111 23456788888888888887643 444433 12333444444
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccc-cCCCHHHHHHhh
Q 009116 122 LISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVL 168 (543)
Q Consensus 122 ~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGail-saTDpv~v~~il 168 (543)
+++.++..+..++++ ++++. ...|++- +-|+|.+.-...
T Consensus 96 ~~~~~~~~~~~~~~~------~~~~~--~~~G~~aGa~T~tpaL~aa~ 135 (154)
T TIGR01625 96 VVPTLLVAVALIKLL------RINYA--LTAGMLAGATTNTPALDAAN 135 (154)
T ss_pred HHHHHHHHHHHHHHh------CCCHH--HHHHHHhccccChHHHHHHH
Confidence 444444455555555 56653 5566654 345554433333
No 78
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=62.98 E-value=1.3e+02 Score=31.50 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccc---cccChhHHHHHhhHHHhHHhhhc-CCHHH
Q 009116 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHV---LMFSEDLFFIYLLPPIIFNAGFQ-VKKKQ 105 (543)
Q Consensus 30 ~~ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~---~~~~~~~~~~~~Lp~IlF~aG~~-l~~~~ 105 (543)
..+-|.....|+++.+...+|.....+++ +-.++.. .+--+.+. -.--.+.|..=..=++++-.|.. +|+++
T Consensus 270 ~llA~~lf~~g~il~kf~~~P~~va~MIi---l~a~lk~-~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~e 345 (438)
T COG3493 270 MLLACTLFMAGGILGKFIGLPGPVAFMII---LVAILKA-ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNE 345 (438)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHH---HHHHHHH-hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHH
Confidence 34556667788999887768865533332 2222221 11111110 00011334445566789999997 99999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhcccc---CCCHHHHHHhhcccC
Q 009116 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFA---ATDSVCTLQVLNQDE 172 (543)
Q Consensus 106 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGails---aTDpv~v~~il~~~~ 172 (543)
.-+.+..-..+-...+++.....+...-.++ | -+|...|..-|+|.+ -|-=+++++--++.+
T Consensus 346 v~~alt~~~vii~~~vVl~~i~~~~f~grl~---~--~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~ 410 (438)
T COG3493 346 VAAALTWQNVIIALSVVLGAILGGAFVGRLM---G--FYPVEAAITAGLCMANMGGTGDVAVLSAADRME 410 (438)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHh---c--CCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence 9877765555545555555444443333333 1 246666666667765 455666666655544
No 79
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=61.24 E-value=76 Score=36.69 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccc
Q 009116 256 LMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTW 291 (543)
Q Consensus 256 l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~ 291 (543)
+++++++++.+++|-+.++..+..+++|++++....
T Consensus 21 ~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l 56 (810)
T TIGR00844 21 FSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCL 56 (810)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhh
Confidence 456667777778888888888888888888886543
No 80
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=59.97 E-value=1.2e+02 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.074 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhhhHHHHHHH-HHHHHhhhcc
Q 009116 176 LYSLVFGEGVVNDATSVVLF-NAIQSFDLSH 205 (543)
Q Consensus 176 l~~ll~gEs~lND~~aivlf-~~~~~~~~~~ 205 (543)
+.-++.-.+++-|+.++..+ ..+.+...+|
T Consensus 3 l~~lLtf~aG~iDa~~fl~~~~~F~s~~TGN 33 (209)
T PF06912_consen 3 LALLLTFIAGFIDAYSFLALGGVFVSFMTGN 33 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHhHHH
Confidence 44566778899999999888 6777765543
No 81
>COG2985 Predicted permease [General function prediction only]
Probab=59.51 E-value=65 Score=34.76 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=55.9
Q ss_pred HHHHhhHHHhHHhhhcCCH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCH
Q 009116 85 FFIYLLPPIIFNAGFQVKK---KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDS 161 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~---~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDp 161 (543)
.+++.|.+.++..|++.-+ ..|||..++-..++++.+ ++...++...+.++ ++ +.+.....+=||+-+...-
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alliv-i~~~~~a~~l~k~~---~~-~~~~~~Gm~sGAlTsTP~L 134 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIV-IAALLLAWVLHKLF---GI-DLGLIAGMFSGALTSTPGL 134 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhhc---CC-CHHHhhhhhcccccCCchh
Confidence 4467888888888888764 467777777777776553 33333333333333 22 3455666777888888888
Q ss_pred HHHHHhhcccCCc
Q 009116 162 VCTLQVLNQDETP 174 (543)
Q Consensus 162 v~v~~il~~~~~~ 174 (543)
+++..++++.+.+
T Consensus 135 ~aa~~~L~~lg~~ 147 (544)
T COG2985 135 GAAQDILRELGAP 147 (544)
T ss_pred HHHHHHHHhhccc
Confidence 8888899988765
No 82
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=59.41 E-value=1.2e+02 Score=29.35 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=29.8
Q ss_pred HHhhHHHhHHhh--hcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 87 IYLLPPIIFNAG--FQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAV 133 (543)
Q Consensus 87 ~~~Lp~IlF~aG--~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~ 133 (543)
..+|-|-.-.-| +.=+++.+|||+++++.-.+.|.+++.+.....++
T Consensus 52 ~~lLgPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~ 100 (215)
T PF04172_consen 52 SFLLGPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLAR 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333 33457899999999998888888876555443333
No 83
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=58.21 E-value=61 Score=33.95 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=65.1
Q ss_pred HHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHH
Q 009116 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQ 166 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~ 166 (543)
..++-..++.-|.+.|.+.+++-++.-..+++ |.+-...+.....+.....+ .+|...+ ..+.+.++..|.--..
T Consensus 116 ~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l-G~v~q~~i~pl~~f~~~~~~---~lP~~~~-ag~~Lvtc~~p~g~~~ 190 (371)
T KOG2718|consen 116 PPGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL-GFVPQYLIMPLLGFLLSKVL---LLPAALA-AGLLLVTCVSPGGGGN 190 (371)
T ss_pred ccHHHHHHHHHhcCccHHHHhhHhhCCcceee-hHHHHHHHHHHHHHhhhhHh---hCCcccc-ceeEEEEeccCCcchh
Confidence 35566678999999999999988875332221 22222223233222222111 2333333 6778889999988877
Q ss_pred hhcccCCchhHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009116 167 VLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSF 201 (543)
Q Consensus 167 il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~ 201 (543)
.+.....+.-..+...++..+-..++++.-.....
T Consensus 191 ~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~ 225 (371)
T KOG2718|consen 191 YLTSKRLPGDVTLSILMTTISTVLAVILTPLLSIL 225 (371)
T ss_pred hheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 77665545445566667777776766655544433
No 84
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=57.55 E-value=2.4e+02 Score=29.31 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=45.2
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAI 152 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alll 152 (543)
|.+++...++--+=+.+|+|.+.|.+...+...+.+++...+..+++ -.++ ++++.+++++
T Consensus 26 Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lv-G~l~------G~~~~~~~~~ 86 (347)
T TIGR00783 26 FLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILV-GTLF------GLGFDHSLMY 86 (347)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc------CCCHhHhhhe
Confidence 66677777888888899999999999887777777777654444333 3344 8888888775
No 85
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=56.84 E-value=2.4e+02 Score=29.10 Aligned_cols=176 Identities=17% Similarity=0.159 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccccC-hhHHHHHhhHHHhHHhhhcCCHHHHHHhHH---HHHHHHHHHHHHHHHH
Q 009116 52 SITALIIGLCTGIVILLTTNGTSSHVLMFS-EDLFFIYLLPPIIFNAGFQVKKKQFFRNFM---TIMLFGAVGTLISFVI 127 (543)
Q Consensus 52 ~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~-~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~---~il~la~~g~~i~~~~ 127 (543)
....+++|+.+|...-...+..+. .++. -++-..++|-..++--=.++|.++.++..+ ...+.-+...++.-+.
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~--~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~l 97 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGK--LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLL 97 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhccc--ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 455666777777543221111110 1111 122233445555555556778776655444 4444444555555555
Q ss_pred HHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhh-ccc-CCchhHHHHHHHHhhhhHHHHHHHHHHHHhhhcc
Q 009116 128 ISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVL-NQD-ETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSH 205 (543)
Q Consensus 128 i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il-~~~-~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~ 205 (543)
....++.+++ +.| .+..|.++-.-.|-....+. ++. +-.+.+.+ .--.+||...+++|.....+..+.
T Consensus 98 m~~la~~fl~-----~~p---ey~~GlILlglApC~aMVivw~~La~Gd~~~tl--v~Va~n~l~qiv~y~~~~~~~l~v 167 (342)
T COG0798 98 MFALAWFFLP-----DEP---EYRAGLILLGLAPCIAMVIVWSGLAKGDRELTL--VLVAFNSLLQIVLYAPLGKFFLGV 167 (342)
T ss_pred HHHHHHHHhC-----CCH---HHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhh--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555542 333 45566665555554333222 332 11122222 345789999999998777664442
Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 206 I-NLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL 243 (543)
Q Consensus 206 ~-~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~ 243 (543)
. ...++...+.+++.....-. +.|.+.+++..|.
T Consensus 168 ~~~~v~~~~i~~Sv~lyl~iPl----i~G~lTR~i~~k~ 202 (342)
T COG0798 168 ISISVPFWTIAKSVLLYLGIPL----IAGVLTRYILIKK 202 (342)
T ss_pred ccccccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 2 22334444555544443333 4445666665553
No 86
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=54.61 E-value=2.9e+02 Score=29.23 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----ccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhc
Q 009116 26 MNLFVALLCACIVIGHLLEE-----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ 100 (543)
Q Consensus 26 i~l~~~ll~~~~~~~~~l~~-----~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~ 100 (543)
+...+.++++|..+|+++.. ...+|.=...+++|+++-.+........ ..+-.-+.+.+..|-..+=.+=.+
T Consensus 220 l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~---v~~~~v~~ig~vsL~lflamALmS 296 (404)
T COG0786 220 LIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYR---VFRRAVDVIGNVSLSLFLAMALMS 296 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcccc---ccHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334555566666665543 2348888888888888877654432211 111112446677777777777788
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH----HhccccCC--CHHHHHHhhcccCCc
Q 009116 101 VKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA----IGAIFAAT--DSVCTLQVLNQDETP 174 (543)
Q Consensus 101 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~all----lGailsaT--Dpv~v~~il~~~~~~ 174 (543)
++.-++-+-+.+.+.+-.++++...+..-+. .++.+| -++-.+.+ .|--+.|| .-+-..++-++.+.+
T Consensus 297 lkLweL~~l~lpl~viL~vQ~i~m~lfa~fv---tfr~mG---~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S 370 (404)
T COG0786 297 LKLWELADLALPLLVILAVQTIVMALFAIFV---TFRLMG---KNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPS 370 (404)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHH---HHHHhC---cchhHHHHhcccccCccCCcHHHHHhhhcchhhcCCC
Confidence 9988998888887777777776554332222 233333 34444443 23333344 333323344445544
Q ss_pred -hh--HHHHHHHHhhhhHHHHH
Q 009116 175 -LL--YSLVFGEGVVNDATSVV 193 (543)
Q Consensus 175 -~l--~~ll~gEs~lND~~aiv 193 (543)
+- -.=+.| +.+-|.+...
T Consensus 371 ~kAf~ivPiVG-Affid~ina~ 391 (404)
T COG0786 371 HKAFIVVPIVG-AFFIDIINAL 391 (404)
T ss_pred ceeeEEeehHH-HHHHHHHHHH
Confidence 31 112456 7777777643
No 87
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=54.54 E-value=3.1e+02 Score=29.62 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhccccc
Q 009116 247 RHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL 326 (543)
Q Consensus 247 ~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~ 326 (543)
|.-||. ..+.+++.+..+.+|-.+.-++.+. ++-.++ +-||+.++|-....+-+..|..+-
T Consensus 15 r~lPD~-fvFAilLT~iv~~~a~~~t~~~p~~-----~v~~Wg-------------~GfW~LL~F~MQM~LilvtG~~lA 75 (453)
T PF02667_consen 15 RYLPDP-FVFAILLTFIVFVLALLLTGQSPLE-----MVEAWG-------------DGFWSLLAFAMQMALILVTGYALA 75 (453)
T ss_pred HHCCcH-HHHHHHHHHHHHHHHHHhcCCCHHH-----HHHHHh-------------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 344543 5556666667766666665555554 222221 258888888888888788887763
No 88
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=52.56 E-value=2.3e+02 Score=27.56 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=24.6
Q ss_pred HhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009116 96 NAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIIS 129 (543)
Q Consensus 96 ~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~ 129 (543)
.--+.-+++.+|||+.+++.-...|.+++.+...
T Consensus 73 AvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~ 106 (226)
T TIGR00659 73 AIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGT 106 (226)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334557889999999999887777776654433
No 89
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=52.49 E-value=2.3e+02 Score=27.63 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009116 95 FNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISA 130 (543)
Q Consensus 95 F~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~ 130 (543)
+.--+.-+++.+||++++++.-.+.|.+++.+....
T Consensus 78 LAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~ 113 (232)
T PRK04288 78 FAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYL 113 (232)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445568999999999998888888876544333
No 90
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=52.07 E-value=2.5e+02 Score=29.23 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHH
Q 009116 32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFM 111 (543)
Q Consensus 32 ll~~~~~~~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~ 111 (543)
++..+.+++..+.++.++|.. .++..+++|.........+ .+. |.....+.=..+--.-|.++|+..|++..+
T Consensus 192 ~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v~~~~~~~----~~l-P~wl~~va~~~iG~~IG~~f~~~~l~~~~r 264 (352)
T COG3180 192 LLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIVHFGGGIT----IQL-PAWLLAVAQALIGALIGSRFDRSILREAKR 264 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhhccccee----eeC-CHHHHHHHHHHHHHHHcccccHHHHHHhHh
Confidence 334444555555555567754 5566666666544332100 122 344444444445667788888877776665
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 009116 112 T--IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (543)
Q Consensus 112 ~--il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~all 151 (543)
. ...+..++.++-+..++.....+. +.++.++++
T Consensus 265 ~~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L 300 (352)
T COG3180 265 LLPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL 300 (352)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence 3 223333333333333333333332 778877654
No 91
>COG2985 Predicted permease [General function prediction only]
Probab=51.80 E-value=38 Score=36.48 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=77.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHh-----ccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhH---HHHHh
Q 009116 18 SDHKSVVSMNLFVALLCACIVIGHLLEE-----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL---FFIYL 89 (543)
Q Consensus 18 ~~~~~~~~i~l~~~ll~~~~~~~~~l~~-----~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~---~~~~~ 89 (543)
+.|...+.++-+.+-+.+..++|.+=-. ..++-...+.+++|+++|.+.... +- ...+++.. ..++.
T Consensus 359 ~~~lq~~~lLp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~ig~iG---pl--~w~mP~~An~~lrelG 433 (544)
T COG2985 359 QIKLQQVDLLPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGFIGAIG---PL--TWFMPPGALLALRELG 433 (544)
T ss_pred cceeeeeccHHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHHhcccC---ce--EEEcChhHHHHHHHHH
Confidence 3444445555554444455554433111 122345667888999998753321 11 12222211 22333
Q ss_pred hHHHhHHhhhcCCHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccc-cCCCHHH
Q 009116 90 LPPIIFNAGFQVKKK-----QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVC 163 (543)
Q Consensus 90 Lp~IlF~aG~~l~~~-----~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGail-saTDpv~ 163 (543)
+ -+|.||..++-. .+-....+++.++.+-++++...+++..++++ .++|. .+.|++. +-|||.+
T Consensus 434 l--~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~------kmn~~--~l~G~laGs~T~ppa 503 (544)
T COG2985 434 L--ALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL------KMNWL--LLCGALAGSMTDPPA 503 (544)
T ss_pred H--HHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH------hccHH--HHhhHHhcCCCChHH
Confidence 3 566666666632 23344556888888888888877777777776 56664 5677766 5688877
Q ss_pred HHHhhcc
Q 009116 164 TLQVLNQ 170 (543)
Q Consensus 164 v~~il~~ 170 (543)
++..++
T Consensus 504 -La~and 509 (544)
T COG2985 504 -LAFAND 509 (544)
T ss_pred -HHHHhh
Confidence 455544
No 92
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=49.45 E-value=3.2e+02 Score=28.33 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhH-HHHHhhccc
Q 009116 275 GILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEI-FIFLYVGMD 324 (543)
Q Consensus 275 Gilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~Fv~lG~~ 324 (543)
.++.+.+.|...++.. -.+++. .+..-+..-.++-+ ++|.-++-.
T Consensus 8 ~i~~ii~~G~~~~~~~--~l~~~~---~~~ls~lv~~~~lP~liF~~i~~~ 53 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFG--ILDPEA---SKGLSKLVFNVFLPALIFSSIANT 53 (385)
T ss_pred HHHHHHHHHHHHHHhC--CCCHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888653 233332 33333433334444 456555544
No 93
>PRK10711 hypothetical protein; Provisional
Probab=48.54 E-value=2e+02 Score=28.11 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009116 95 FNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVI 127 (543)
Q Consensus 95 F~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~ 127 (543)
|..-+.=+++.+|||+.+++.--..|.+++...
T Consensus 73 LAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s 105 (231)
T PRK10711 73 LAFPLYEQLHQIRARWKSIISICFIGSVVAMVT 105 (231)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445568899999999988777777766443
No 94
>COG3329 Predicted permease [General function prediction only]
Probab=45.72 E-value=80 Score=31.98 Aligned_cols=148 Identities=19% Similarity=0.282 Sum_probs=77.3
Q ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcC--CHHHHHHhHHHHHHHH
Q 009116 40 GHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQV--KKKQFFRNFMTIMLFG 117 (543)
Q Consensus 40 ~~~l~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l--~~~~f~~~~~~il~la 117 (543)
-.++++ ..+...+.+++.|+++|.+. ..++.+.++---+-.|+-.|++.+.+-|++- +.+++||.......++
T Consensus 208 ~ell~E-sflnpal~lllggl~iGlit----Ge~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~fg 282 (372)
T COG3329 208 WELLQE-SFLNPALVLLLGGLAIGLIT----GEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVLFG 282 (372)
T ss_pred HHHHHH-HHcCchHHHHHHHHHHhhee----ccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcceehHH
Confidence 345555 33677788889999999642 1122222211112256778888899988874 3456666665566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhccc---CCchhHHHHHHHH-----hhhhH
Q 009116 118 AVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD---ETPLLYSLVFGEG-----VVNDA 189 (543)
Q Consensus 118 ~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~---~~~~l~~ll~gEs-----~lND~ 189 (543)
++.-++-.++ ++..-.+ .++. .|++.....+++.+.++.+=.++-+.++-. -+|.+| .|.| -+|=.
T Consensus 283 llaPil~g~i-g~~lg~~-a~y~-tgfs~g~~vllAVlaaSaSyIa~PaalR~~iPeAnPs~y---l~~Slgvtfpfni~ 356 (372)
T COG3329 283 LLAPILHGFI-GLLLGMI-AGYP-TGFSDGGVVLLAVLAASASYIAVPAALRLAIPEANPSLY---LGASLGVTFPFNIT 356 (372)
T ss_pred HHHHHHHHHH-HHHHHHH-hccc-ccCCCcchHHHHHHhcchhhccccHHHhccCCCCCCcce---eehhhccccceeee
Confidence 5555443222 2221111 1111 144444467777766665555555555432 133222 2222 35666
Q ss_pred HHHHHHHHH
Q 009116 190 TSVVLFNAI 198 (543)
Q Consensus 190 ~aivlf~~~ 198 (543)
++|.+|.-+
T Consensus 357 igIPLyi~~ 365 (372)
T COG3329 357 IGIPLYIEL 365 (372)
T ss_pred echHHHHHH
Confidence 677666433
No 95
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=43.70 E-value=66 Score=37.30 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=48.0
Q ss_pred hHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHH
Q 009116 83 DLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSV 162 (543)
Q Consensus 83 ~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv 162 (543)
+....++||.-....|.+.|...+.+ +.............- ++.+++.-++. ++|+.+++.+|.+++.---+
T Consensus 309 ~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K-~l~t~~~sl~~------k~p~~~~l~l~~lm~~kgl~ 380 (769)
T KOG1650|consen 309 DLVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVK-LLSTLGTSLYC------KLPLRDSLALGLLMSTKGLV 380 (769)
T ss_pred HHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHh------cCchhHHHHHHHHHHhhhHH
Confidence 44557899999999999999999988 333222222222222 22222222234 89999999999998876665
Q ss_pred HH
Q 009116 163 CT 164 (543)
Q Consensus 163 ~v 164 (543)
..
T Consensus 381 el 382 (769)
T KOG1650|consen 381 EL 382 (769)
T ss_pred HH
Confidence 53
No 96
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=43.27 E-value=4.4e+02 Score=28.13 Aligned_cols=61 Identities=13% Similarity=0.283 Sum_probs=48.2
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAI 152 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alll 152 (543)
|.+++...++--+=+.+|+|.+.|.....+-..+.+++..++..+.... ++ +.++.+++++
T Consensus 95 Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~-l~------G~~~~~~i~~ 155 (414)
T PF03390_consen 95 FLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGM-LF------GYSFKDAIFY 155 (414)
T ss_pred hHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHH
Confidence 6777888888888899999999999998888888888776655554444 44 8888888875
No 97
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=38.99 E-value=89 Score=31.83 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=32.2
Q ss_pred HHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHH
Q 009116 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 124 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~ 124 (543)
.+.+|+.-|.-|..+|.+...+...+-.++++..++++
T Consensus 200 ~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vt 237 (314)
T PF03812_consen 200 PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVT 237 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHH
Confidence 46788899999999999999999988888887766655
No 98
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=38.03 E-value=4.5e+02 Score=26.68 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 56 LIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHF 135 (543)
Q Consensus 56 ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l 135 (543)
.+++.++|..........+.. +.-.-+.+.....|..++..|..++.+..+++++.+....+.=.++.-++.......+
T Consensus 184 ~iia~i~Gl~~~~~~i~lP~~-l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~ 262 (321)
T TIGR00946 184 PLWAPLLSVILSLVGFKMPGL-ILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLI 262 (321)
T ss_pred ChHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HhhcccCCCCHHHHHHHhccccCCCHHHHHHhh-cccCCc-hhHHHHHHHHhhhhHHHHHHHHHHH
Q 009116 136 FKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVL-NQDETP-LLYSLVFGEGVVNDATSVVLFNAIQ 199 (543)
Q Consensus 136 ~~~~~~~~l~~~~alllGailsaTDpv~v~~il-~~~~~~-~l~~ll~gEs~lND~~aivlf~~~~ 199 (543)
+++ ....-...+.++.=|+....++ ++++.. +...-...-|.+=-...+.+...+.
T Consensus 263 -------~l~-~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 263 -------GLR-GLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred -------CCC-hHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
No 99
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=37.69 E-value=17 Score=38.04 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=10.3
Q ss_pred cccchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhHHhhhcCCHHHH---HHhHHHHHHHHHHHHH
Q 009116 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVKKKQF---FRNFMTIMLFGAVGTL 122 (543)
Q Consensus 47 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~~~Lp~IlF~aG~~l~~~~f---~~~~~~il~la~~g~~ 122 (543)
.+.+..++.+++|+++.. .. .. ++..+. -+-+. .++.|......|.++|.+.+ .+.+.....+.+...+
T Consensus 232 ~g~s~~l~af~~Gl~~~~----~~-~~-~~~~~~-l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~ 304 (380)
T PF00999_consen 232 LGLSGILGAFIAGLILSN----SP-FA-ERLEEK-LESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILL 304 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccceeeeeehcccc----cc-cc-chhhhc-ccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHH
Confidence 457778888888888871 11 11 111111 11133 66777777899999998888 4444444444333333
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHH
Q 009116 123 ISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (543)
Q Consensus 123 i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~ 163 (543)
.-...+....+ .. +.++.+++..|....+-..+.
T Consensus 305 ~k~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~g~~~ 338 (380)
T PF00999_consen 305 GKFIGVYLASR-LF------GIPWKEALFIGLGMLPRGEVS 338 (380)
T ss_dssp -------------------------HHHHTTTTSS--HHHH
T ss_pred hhhceeehhhh-hc------ccccchhHHHHHhhcCccHHH
Confidence 33222211111 11 678999999997777554444
No 100
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=37.32 E-value=1.4e+02 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHH
Q 009116 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125 (543)
Q Consensus 87 ~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~ 125 (543)
.+..|..-|.-|-.+|.+...+-..+-.++++..++++.
T Consensus 200 ~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG 238 (314)
T TIGR00793 200 QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTG 238 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 467888899999999999999988888888876666553
No 101
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=36.36 E-value=1.5e+02 Score=24.80 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 009116 418 IMITSTITVVLFSTVV 433 (543)
Q Consensus 418 ~i~~~t~~vVl~T~~v 433 (543)
.++.+++.++..|++|
T Consensus 19 ~LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLI 34 (102)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333444444445444
No 102
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=36.22 E-value=5e+02 Score=26.74 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=51.3
Q ss_pred hHHHHHhhHHHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHH
Q 009116 83 DLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSV 162 (543)
Q Consensus 83 ~~~~~~~Lp~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv 162 (543)
+.+..|+|--|=|.+|.++....+..-..+++.--..+. ++-+..|.++.+++ +++..++..+++--.+.+.+
T Consensus 27 k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~-----liPl~~~~iLr~~~--~l~~~daaAiAAhYGSVSav 99 (327)
T PF05982_consen 27 KFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGI-----LIPLIAFPILRRLG--KLDRADAAAIAAHYGSVSAV 99 (327)
T ss_pred HHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcc--CCChhhHHHHHHHcCchHHH
Confidence 335567777788899999888777664444443333333 34445565555433 56777777776665555554
Q ss_pred H---HHHhhcccCCc
Q 009116 163 C---TLQVLNQDETP 174 (543)
Q Consensus 163 ~---v~~il~~~~~~ 174 (543)
+ ..+.+++.+.+
T Consensus 100 TF~~a~~~L~~~gi~ 114 (327)
T PF05982_consen 100 TFAAALAFLESQGIS 114 (327)
T ss_pred HHHHHHHHHHHCCCC
Confidence 3 35566666544
No 103
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.40 E-value=87 Score=28.80 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=38.0
Q ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhc
Q 009116 100 QVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLN 169 (543)
Q Consensus 100 ~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~ 169 (543)
++|+..-||+...+....+.+..+.....+.....+|+.-+-.++-|. ++|.++++.-.++.+.-+|
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~N---llGVil~~~~~~~~l~~~k 71 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWN---LLGVILGLLLTSALLRQLK 71 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeee---HHHHHHHHHHHHHHHHHHc
Confidence 578888899888766555555555555555555556653221123333 4566655554555555444
No 104
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=33.79 E-value=4.7e+02 Score=25.70 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhccccccc
Q 009116 262 YLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI 328 (543)
Q Consensus 262 ~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~ 328 (543)
...-.+++.++.+.+++-..+|+.++.....-.++. +..+.++.+.-.++....|++++..
T Consensus 5 ~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d~~ 65 (273)
T TIGR00932 5 VLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELDLE 65 (273)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 334456777888899999999999986532212211 2456666677777788888888543
No 105
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.83 E-value=7e+02 Score=26.02 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHhcccchhHHHHhhhhhhcc------CCCccc
Q 009116 340 KSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTS------SGHTKL 413 (543)
Q Consensus 340 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~------~~~~~~ 413 (543)
.++.+..+...+.++--.-+|..+-++.. -.-.+-..+++|. |+ -|-..-.+|+.+-+. ++....
T Consensus 111 hS~afl~L~F~LAivdc~SnVtFLPFMs~-------lpp~fL~afFvG~-GL-SaLlPsllaLaQGtg~~~C~~n~t~~r 181 (439)
T KOG4255|consen 111 HSWAFLSLLFGLAIVDCTSNVTFLPFMSQ-------LPPAFLNAFFVGM-GL-SALLPSLLALAQGTGRLECDLNGTPGR 181 (439)
T ss_pred chHHHHHHHHHHHHHHhhccchhhhhhhh-------CChHHHHHHHHhc-cH-HHHHHHHHHHHccCCceeecCCCCCCC
Confidence 35555555555555544444433333221 1334445666664 33 555555566554211 111111
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHhC
Q 009116 414 HGNAIMITSTITVVLFSTVVFGLMTQPLVRILL 446 (543)
Q Consensus 414 ~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~ 446 (543)
+.-+.+-..++..+++.........-..+.+.+
T Consensus 182 ~fP~rFs~s~FFl~l~~~~~~alaAF~vL~r~~ 214 (439)
T KOG4255|consen 182 PFPPRFSVSTFFLALFAFTCAALAAFFVLYRLG 214 (439)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 122334445556566555554443333333333
No 106
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=26.80 E-value=3.1e+02 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009116 95 FNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISA 130 (543)
Q Consensus 95 F~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~ 130 (543)
-..|.--..+.+++++.+++...+++|+++....+.
T Consensus 58 a~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~tg~ 93 (96)
T PF03788_consen 58 AGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAVTGW 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666778889999999999999999887666553
No 107
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=23.98 E-value=5e+02 Score=22.86 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH----HHhhHHHhHHhh
Q 009116 25 SMNLFVALLCACIVIGHLLEENRW--MNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF----IYLLPPIIFNAG 98 (543)
Q Consensus 25 ~i~l~~~ll~~~~~~~~~l~~~~~--lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~----~~~Lp~IlF~aG 98 (543)
.+....+++..+..+|..+.+... +|.++ +|+++=...+.. ..-..++.+-..+.+. .+++|+ ..|
T Consensus 6 ~~~~q~~ii~~~~~~G~~i~~~l~lplPGsI----iGmvLLfllL~~-~iv~l~wv~~~a~~Ll~~m~llFVPa---~Vg 77 (128)
T COG1380 6 QILRQLAIILGFLFLGEWIASLLHLPLPGSI----IGMVLLFLLLAL-KIVKLEWVERGATFLLRNMALLFVPA---GVG 77 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHHHh-CCccHHHHHHHHHHHHHHHHHHHhcc---hHH
Confidence 345566777788888988887443 44433 233222211111 1111111111112111 222222 233
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 99 FQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (543)
Q Consensus 99 ~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~ 136 (543)
.--..+.+.+++.+++...+.+|++...+.|....++.
T Consensus 78 Vm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 78 VMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788999999999999999998888877766653
No 108
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=23.63 E-value=5.8e+02 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=14.4
Q ss_pred ccCCCHHHHHHhhcccCCc
Q 009116 156 FAATDSVCTLQVLNQDETP 174 (543)
Q Consensus 156 lsaTDpv~v~~il~~~~~~ 174 (543)
...|+|.-....+++.+.|
T Consensus 111 ~~TT~~~~l~~~l~~l~~P 129 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVP 129 (198)
T ss_pred HHcCCHHHHHHHHHHcCCC
Confidence 3467888878888887777
No 109
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.00 E-value=2.4e+02 Score=23.70 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHH
Q 009116 31 ALLCACIVIGHLLEENRW--MNESITALIIGLCTGIV 65 (543)
Q Consensus 31 ~ll~~~~~~~~~l~~~~~--lp~~~~~ll~Gil~G~~ 65 (543)
+-++++..+|.++.++.. ..-.+..+++|+++|..
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 345677778888887321 22355566667777653
No 110
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=22.27 E-value=7e+02 Score=25.78 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhccccCCCHHHHHHhhcccCC-chhHHHHHHHHhhhhHHHHHHHHHHH-HhhhcccchHHHHHHHHHHHH
Q 009116 143 TLKIGDYLAIGAIFAATDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFNAIQ-SFDLSHINLSIALKFVGSFFY 220 (543)
Q Consensus 143 ~l~~~~alllGailsaTDpv~v~~il~~~~~-~~l~~ll~gEs~lND~~aivlf~~~~-~~~~~~~~~~~~~~~~~~~l~ 220 (543)
..|..-++++| ..+||.+. +|+......| +-|.+.+.+=..+- ....+.+-......++.--+.
T Consensus 212 a~pLig~Lm~G------------nllrEsGv~~rl~~taqn~--l~nivTifLGl~vG~~~~A~~fL~~~tl~Il~LG~~ 277 (354)
T TIGR01109 212 ALPLVGMLMFG------------NLMRESGVVERLSKTASNE--LLNIVTILLGLSVGAKMRADKFLTPQTLGILLLGVV 277 (354)
T ss_pred hHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH--HHHHHHHHHHHHhhhhccHHhhCChHHHHHHHHHHH
Confidence 34555666666 35688774 5777666433 33444444332222 222222222233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009116 221 LFIASTMLGVIAGLLSAFIIK 241 (543)
Q Consensus 221 ~~~~s~~~G~~~G~~~~~~~~ 241 (543)
.+..+.+.|++.|++..++.|
T Consensus 278 Af~~~tagGvl~aklmn~fs~ 298 (354)
T TIGR01109 278 AFAVATAGGVLMAKLMNLFLK 298 (354)
T ss_pred HHHHhhhHHHHHHHHHHHHcc
Confidence 556666667666666655444
No 111
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=22.05 E-value=7e+02 Score=23.86 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhcccCCchhHHHHHHHHhhhhHHHH
Q 009116 129 SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSV 192 (543)
Q Consensus 129 ~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~~~~~l~~ll~gEs~lND~~ai 192 (543)
++..|.....+|- +......-++|-+.|+|.....++-..+. .|.......+..++...+.+
T Consensus 7 sf~gYia~r~~G~-r~Gl~ltg~~GGlvSSTA~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~ 68 (211)
T PF13194_consen 7 SFAGYIAVRLLGP-RRGLLLTGLLGGLVSSTATTVSLARRSRE-NPELSRLLAAGILLASAVMF 68 (211)
T ss_pred hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHH
Confidence 4444544433332 34666777899999998777765544332 44444445555555554444
No 112
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=21.91 E-value=8.1e+02 Score=25.02 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=29.5
Q ss_pred HHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccch
Q 009116 279 VFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEK 330 (543)
Q Consensus 279 v~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~ 330 (543)
=+..|++++|. ++ ..+++...-..+.-+++-.-+|..++..+.
T Consensus 177 PlliG~ilGNL-----D~----~~r~fl~~~~~~lIpFf~FaLGaginl~~i 219 (314)
T TIGR00793 177 PFLVGFALGNL-----DP----ELRDFFSKAVQTLIPFFAFALGNTIDLGVI 219 (314)
T ss_pred HHHHHHHHhcC-----CH----HHHHHhccCCCeeeehhhhhhcCCCCHHHH
Confidence 45679999943 43 355666666667778888888988854443
No 113
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=21.72 E-value=1e+03 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHHHHHhhccccc
Q 009116 303 KHAFATLSFVAEIFIFLYVGMDAL 326 (543)
Q Consensus 303 ~~~~~~l~~l~~~~~Fv~lG~~~~ 326 (543)
+.||+.++|-.+..+=+..|..+-
T Consensus 49 ~GfW~LL~F~MQM~lilvtG~~lA 72 (438)
T TIGR00366 49 NGFWNLLGFGMQMALILVTGYALA 72 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888877778887663
No 114
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.37 E-value=4.4e+02 Score=27.32 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccc
Q 009116 274 SGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD 327 (543)
Q Consensus 274 SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~ 327 (543)
++.+-+.+.|++++-..... +-.......+..+.++....++.-+.+|..+..
T Consensus 244 nP~~~a~~lgli~~~~~~~~-~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~ 296 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLR-PLFFPSFITDSLSYLGAAAVPLALFVLGASLAR 296 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555555566655332110 000014566677778888888888888888743
Done!