Query 009116
Match_columns 543
No_of_seqs 297 out of 1662
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 19:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.4 2.8E-12 9.5E-17 131.8 16.9 309 84-445 62-383 (388)
2 2l0e_A Sodium/hydrogen exchang 98.2 5.8E-08 2E-12 62.7 -1.6 31 145-175 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 97.9 4.3E-07 1.5E-11 55.8 -2.3 23 174-196 4-26 (28)
4 2k3c_A TMIX peptide; membrane 97.9 6.2E-08 2.1E-12 62.8 -6.5 31 260-290 2-32 (33)
5 1y4e_A Sodium/hydrogen exchang 97.3 1.7E-05 5.7E-10 48.2 -1.5 25 80-104 2-26 (27)
6 2kbv_A Sodium/hydrogen exchang 97.1 0.00014 4.9E-09 44.6 1.4 23 381-404 2-24 (28)
7 3zux_A Transporter, ASBTNM; tr 93.9 5.6 0.00019 39.7 22.6 138 85-231 44-184 (332)
8 2zy9_A Mg2+ transporter MGTE; 33.6 1.3E+02 0.0044 31.1 9.1 18 183-200 450-467 (473)
9 2bec_B Sodium/hydrogen exchang 14.8 1.6 5.3E-05 29.7 -6.8 37 443-484 2-38 (43)
10 2q67_A Potassium channel prote 11.4 3.6E+02 0.012 21.6 5.3 25 126-155 35-59 (114)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.42 E-value=2.8e-12 Score=131.79 Aligned_cols=309 Identities=13% Similarity=0.115 Sum_probs=196.1
Q ss_pred HHHHHhhHHHhHHhhhcCCHHHH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhcccc
Q 009116 84 LFFIYLLPPIIFNAGFQVKKKQF----FRNFM--TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFA 157 (543)
Q Consensus 84 ~~~~~~Lp~IlF~aG~~l~~~~f----~~~~~--~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGails 157 (543)
++-.-++.+.+|.+|+|+|.+.+ ++..+ .-...|+.|+++++.+ |+.+ +....++.--+++.+
T Consensus 62 windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip~ 130 (388)
T 1zcd_A 62 WINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIPA 130 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSSS
T ss_pred HHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHHH
Confidence 34567888899999999998866 44433 3577888899888654 3344 555566788999999
Q ss_pred CCCHHHHHHhhcccC--Cc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 158 ATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGL 234 (543)
Q Consensus 158 aTDpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~ 234 (543)
+||-+.++.++...+ .| .++..+.+-+++||..++++..++.. ++.+.. .... .+. . .
T Consensus 131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~~~---~l~~---------~~~-~---~ 191 (388)
T 1zcd_A 131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLSMA---SLGV---------AAV-A---I 191 (388)
T ss_dssp CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHH---HHHH---------HHH-H---H
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHH---HHHH---------HHH-H---H
Confidence 999999999998764 55 58899999999999999999887743 222221 1110 011 1 1
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHH-HHH
Q 009116 235 LSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLS-FVA 313 (543)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~ 313 (543)
...+..+|. +.+.....+.+ ....++.++..|.+.++|.|++|+++.....++ ++..++.++..+.++ +++
T Consensus 192 ~~~~~l~r~----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~--~~~~~~le~~l~p~v~~~i 263 (388)
T 1zcd_A 192 AVLAVLNLC----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAKRLEHVLHPWVAYLI 263 (388)
T ss_dssp HHHHHHHHT----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGS--SCHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHh----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccC--CCHHHHHHHHHHHHHHHHH
Confidence 111333332 22222222222 336677789999999999999999999754322 122445666666655 588
Q ss_pred hHHH-HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH-hc
Q 009116 314 EIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW-AG 390 (543)
Q Consensus 314 ~~~~-Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~G 390 (543)
-++| |+..|+++.... .+.. .... ...+.+..+++|+++++..+++..+.+. +.+++.+|+|..-++. +|
T Consensus 264 lPlFaFanaGv~l~~~~-~~~l----~~~~--~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g 336 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVT-LDGL----TSIL--PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG 336 (388)
T ss_dssp HHHHHHHHCCCCCSSSC-CCTH----HHHS--STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT
T ss_pred HHHHHHHhcCeeecccc-hhhc----cChH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc
Confidence 9999 999999985321 0000 0001 1122345689999998888887644331 3456899999977777 55
Q ss_pred ccchhHHHHhhhhhhccCCCccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 009116 391 LMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRIL 445 (543)
Q Consensus 391 lpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l 445 (543)
.||.+++..+...+. .+. ....+.....++..+++|+++ .+.++|+.
T Consensus 337 -igftmsL~Ia~laf~-~~~--~~~~~~ak~~il~~s~~s~i~----g~~~L~~~ 383 (388)
T 1zcd_A 337 -IGFTMSIFIASLAFG-SVD--PELINWAKLGILVGSISSAVI----GYSWLRVR 383 (388)
T ss_dssp -CCHHHHHHHHHHHST-TSS--CSSHHHHHHHHHHHHHTTTST----TTGGGTTT
T ss_pred -cchHHHHHHHHHhcc-CCc--hhhHhhHHHHHHHHHHHHHHH----HHHHHHHh
Confidence 599999988755432 111 011222244445555555555 55555443
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.25 E-value=5.8e-08 Score=62.71 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=27.9
Q ss_pred CHHHHHHHhccccCCCHHHHHHhhcccCCch
Q 009116 145 KIGDYLAIGAIFAATDSVCTLQVLNQDETPL 175 (543)
Q Consensus 145 ~~~~alllGailsaTDpv~v~~il~~~~~~~ 175 (543)
+|..|+++||++|+|||+++++++++.+.|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4667899999999999999999999988775
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=97.91 E-value=4.3e-07 Score=55.75 Aligned_cols=23 Identities=57% Similarity=0.886 Sum_probs=21.3
Q ss_pred chhHHHHHHHHhhhhHHHHHHHH
Q 009116 174 PLLYSLVFGEGVVNDATSVVLFN 196 (543)
Q Consensus 174 ~~l~~ll~gEs~lND~~aivlf~ 196 (543)
++++.+++|||++||++++++|+
T Consensus 4 ~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 4 ELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp STTHHHHTTTTTTTTTTTTTTTT
T ss_pred ceEEEEEEeeeeecccEEEEEEe
Confidence 47999999999999999999985
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=97.91 E-value=6.2e-08 Score=62.83 Aligned_cols=31 Identities=42% Similarity=0.748 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHhcccc
Q 009116 260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYT 290 (543)
Q Consensus 260 ~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~ 290 (543)
++|++|.+||.+|+|||+|+++||++++||.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 4688999999999999999999999999885
No 5
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=97.29 E-value=1.7e-05 Score=48.22 Aligned_cols=25 Identities=44% Similarity=1.059 Sum_probs=22.8
Q ss_pred cChhHHHHHhhHHHhHHhhhcCCHH
Q 009116 80 FSEDLFFIYLLPPIIFNAGFQVKKK 104 (543)
Q Consensus 80 ~~~~~~~~~~Lp~IlF~aG~~l~~~ 104 (543)
+++++|+.++||||+|++||+++.|
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 5788899999999999999999875
No 6
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=97.12 E-value=0.00014 Score=44.65 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=20.8
Q ss_pred hhHHHHHHhcccchhHHHHhhhhh
Q 009116 381 KQQLTIWWAGLMRGAVSMALAYKQ 404 (543)
Q Consensus 381 ~~~~~i~~~GlpRGavs~aLa~~~ 404 (543)
++|.+|+|+|+ ||+++++|++..
T Consensus 2 ~~Q~i~~~~GL-RGAvafaL~~~l 24 (28)
T 2kbv_A 2 KDQFIIAYGGL-RGAIAFSLGYLL 24 (28)
T ss_dssp CHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred CceeEEEeecc-hHHHHHHHHHhc
Confidence 58999999997 999999999865
No 7
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.95 E-value=5.6 Score=39.65 Aligned_cols=138 Identities=21% Similarity=0.250 Sum_probs=66.9
Q ss_pred HHHHhhHHHhHHhhhcCCHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCH
Q 009116 85 FFIYLLPPIIFNAGFQVKKKQFFRNF---MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDS 161 (543)
Q Consensus 85 ~~~~~Lp~IlF~aG~~l~~~~f~~~~---~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDp 161 (543)
....++..++|..|.+++.+++++.. +.... +.+..+.+.-+.++.+...++++ -....++++-++.-+++.
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~----~l~~~~vi~Pll~~~l~~~~~l~-~~~~~Glil~~~~P~~~~ 118 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVII----GVIAQFAIMPATAWCLSKLLNLP-AEIAVGVILVGCCPGGTA 118 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHH----HHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHSCCCTH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHH----HHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHhcCCchhH
Confidence 34568889999999999999998544 43332 22223333222233222112221 123333444444434443
Q ss_pred HHHHHhhcccCCchhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 162 VCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVI 231 (543)
Q Consensus 162 v~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~ 231 (543)
..+..-+-+ ++.. +-.....+|+..+++..=....+..++....+....+.+.+...+.-+++|.+
T Consensus 119 s~v~t~~a~-Gd~~---la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~l~~~vllP~~lG~l 184 (332)
T 3zux_A 119 SNVMTYLAR-GNVA---LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLI 184 (332)
T ss_dssp HHHHHHHTT-CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhC-CCHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222 3322 22345567888888776655554433222333444445555444444444443
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=33.61 E-value=1.3e+02 Score=31.14 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=13.2
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 009116 183 EGVVNDATSVVLFNAIQS 200 (543)
Q Consensus 183 Es~lND~~aivlf~~~~~ 200 (543)
-+.++|.+++++|-.+..
T Consensus 450 itt~~D~~g~~~~~~~a~ 467 (473)
T 2zy9_A 450 VATLSDVTGLLIYLSVAR 467 (473)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346899999988765544
No 9
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=14.76 E-value=1.6 Score=29.68 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=19.7
Q ss_pred HHhCCCCcccccccCCCCCCCccccccccCCCCCCCCCCCCC
Q 009116 443 RILLPSSKNLSRMLSDESSTPKSFIVPLLGNGQGSEADLKTP 484 (543)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 484 (543)
++|..++++.. +++..|+++.+++++...+.||++|+
T Consensus 2 ~~L~Vkr~~~~-----~~t~~e~ih~~~~dhlmaGiEdi~G~ 38 (43)
T 2bec_B 2 DLLAVKKKQET-----KRSINEEIHTQFLDHLLTGIEDICGH 38 (43)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cceeeeccccc-----cccHHHHHhhhhhhhhhhchHhhcCC
Confidence 45666654432 35667889999999888887887654
No 10
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=11.40 E-value=3.6e+02 Score=21.63 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHhcc
Q 009116 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAI 155 (543)
Q Consensus 126 ~~i~~~~~~l~~~~~~~~l~~~~alllGai 155 (543)
.+.|...+...+ ++++.+|+-+..+
T Consensus 35 ~~~g~~~~~~~e-----~~~~~~a~y~~~~ 59 (114)
T 2q67_A 35 LISGTIFYSTVE-----GLRPIDALYFSVV 59 (114)
T ss_dssp HHHHHHHHHHHS-----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCHHHHHHHHHH
Confidence 344545554443 7889999888753
Done!