Query 009116
Match_columns 543
No_of_seqs 297 out of 1662
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 19:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009116.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009116hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 46.7 22 0.0016 29.6 7.0 37 163-200 131-169 (173)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 30.5 42 0.003 18.6 4.1 22 216-237 4-25 (32)
3 d1sr9a1 a.5.7.1 (A:437-491) 2- 13.7 26 0.0019 23.2 0.8 15 503-517 41-55 (55)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 13.2 4.4E+02 0.032 23.7 16.6 77 50-126 3-87 (405)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 8.2 6.3E+02 0.046 22.7 9.2 16 272-287 317-332 (383)
6 d1wira_ g.37.1.5 (A:) Protein 6.2 51 0.0037 25.5 -0.1 16 507-524 83-98 (121)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 5.9 1E+02 0.0073 18.0 1.1 15 275-289 20-34 (37)
8 d2r7ka1 c.30.1.8 (A:1-123) 5-f 5.3 1.2E+02 0.0089 23.2 1.6 27 498-524 90-118 (123)
9 d1q90r_ f.23.12.1 (R:) ISP sub 4.8 3.6E+02 0.026 16.0 4.7 23 107-129 9-31 (39)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 4.8 5.4E+02 0.039 18.0 5.6 40 205-244 59-98 (103)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=46.72 E-value=22 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=21.1
Q ss_pred HHHHh-hcccC-CchhHHHHHHHHhhhhHHHHHHHHHHHH
Q 009116 163 CTLQV-LNQDE-TPLLYSLVFGEGVVNDATSVVLFNAIQS 200 (543)
Q Consensus 163 ~v~~i-l~~~~-~~~l~~ll~gEs~lND~~aivlf~~~~~ 200 (543)
+.++. +|+.+ +|...+-- -.+.+||.++++.|-.+..
T Consensus 131 ~~lPlll~klg~DPA~aS~P-~itti~Di~g~~iyf~iA~ 169 (173)
T d2yvxa3 131 AMLPFLLRRLGVDPALVSNP-LVATLSDVTGLLIYLSVAR 169 (173)
T ss_dssp HHHHHHHHHTSCCGGGSCST-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 33444 45554 45332211 1457899999988876554
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.49 E-value=42 Score=18.63 Aligned_cols=22 Identities=27% Similarity=0.756 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009116 216 GSFFYLFIASTMLGVIAGLLSA 237 (543)
Q Consensus 216 ~~~l~~~~~s~~~G~~~G~~~~ 237 (543)
+..++..+..+..|+++|.+.+
T Consensus 4 gavfyivfialffgiavgiifa 25 (32)
T d2e74e1 4 GAVFYIVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHhhheee
Confidence 4455566667777777776654
No 3
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.67 E-value=26 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.818 Sum_probs=13.3
Q ss_pred hhhhHHHhhhccccc
Q 009116 503 VHHYWRKFDDAFMRP 517 (543)
Q Consensus 503 ~~~~w~~fd~~~~~p 517 (543)
....|+-|.++|+.|
T Consensus 41 ~~~I~~~F~~~Yl~p 55 (55)
T d1sr9a1 41 PKEMWDAFAEEYLAP 55 (55)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 468899999999988
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.22 E-value=4.4e+02 Score=23.74 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCC-CccccccChhHHH---HHhhHHHhHHh---hh-cCCHHHHHHhHHHHHHHHHHHH
Q 009116 50 NESITALIIGLCTGIVILLTTNGT-SSHVLMFSEDLFF---IYLLPPIIFNA---GF-QVKKKQFFRNFMTIMLFGAVGT 121 (543)
Q Consensus 50 p~~~~~ll~Gil~G~~~~~~~~~~-~~~~~~~~~~~~~---~~~Lp~IlF~a---G~-~l~~~~f~~~~~~il~la~~g~ 121 (543)
.+.+..+++|+++|.+.....+.+ ...+++.-.|+|. +...+|++|.+ |. +++.++.+|-....+.+-+..+
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt 82 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHH
Confidence 456677888888887654221110 0122333345544 33445554432 22 4555667777766666666666
Q ss_pred HHHHH
Q 009116 122 LISFV 126 (543)
Q Consensus 122 ~i~~~ 126 (543)
+++..
T Consensus 83 ~iA~~ 87 (405)
T d2nwwa1 83 AFAVT 87 (405)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65533
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.17 E-value=6.3e+02 Score=22.65 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.2
Q ss_pred hcchhHHHHHHHHHhc
Q 009116 272 YLSGILTVFFCGIVMS 287 (543)
Q Consensus 272 ~~SGilav~~~Gl~~~ 287 (543)
+..|+++..++|+.-+
T Consensus 317 g~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 317 GVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHHHHHHhcC
Confidence 4579999999999865
No 6
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.24 E-value=51 Score=25.48 Aligned_cols=16 Identities=25% Similarity=0.833 Sum_probs=12.4
Q ss_pred HHHhhhcccccccCCCCC
Q 009116 507 WRKFDDAFMRPVFGGRGF 524 (543)
Q Consensus 507 w~~fd~~~~~p~f~~~~~ 524 (543)
|. |++||||++-....
T Consensus 83 wd--dd~YL~PvledD~L 98 (121)
T d1wira_ 83 WE--KDEYLKPVLEDDLL 98 (121)
T ss_dssp TC--CHHHHSCSSSSCHH
T ss_pred CC--CcccccccCCCCcc
Confidence 64 89999999876543
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.89 E-value=1e+02 Score=18.04 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHhccc
Q 009116 275 GILTVFFCGIVMSHY 289 (543)
Q Consensus 275 Gilav~~~Gl~~~~~ 289 (543)
|++-+|+.|+.+++|
T Consensus 20 GlLlifvl~vLFssY 34 (37)
T d2axtl1 20 GLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666654
No 8
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=5.31 E-value=1.2e+02 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=20.5
Q ss_pred CCcchhhhh--HHHhhhcccccccCCCCC
Q 009116 498 TPSHTVHHY--WRKFDDAFMRPVFGGRGF 524 (543)
Q Consensus 498 ~~~~~~~~~--w~~fd~~~~~p~f~~~~~ 524 (543)
-|+++.-.| |+++.+++-=|+||.|..
T Consensus 90 IPhgSfv~Y~G~~~ie~~~~VP~FGnR~l 118 (123)
T d2r7ka1 90 VPHGSFIAYCGLDNVENSFLVPMFGNRRI 118 (123)
T ss_dssp CCBHHHHHHHCHHHHHHTCCSCBBSCGGG
T ss_pred ecCCCeeeeecHHHHHhcCCCCeecChhh
Confidence 355554444 889999999999999854
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.82 E-value=3.6e+02 Score=16.00 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=13.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 009116 107 FRNFMTIMLFGAVGTLISFVIIS 129 (543)
Q Consensus 107 ~~~~~~il~la~~g~~i~~~~i~ 129 (543)
||++...++++.+.......+..
T Consensus 9 rR~~MNLll~G~~~~~~~g~l~p 31 (39)
T d1q90r_ 9 KRNIMNLILAGGAGLPITTLALG 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhccc
Confidence 56666777776655554444433
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.78 E-value=5.4e+02 Score=17.96 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116 205 HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLY 244 (543)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~ 244 (543)
+..+.+...-+...+..+.|-.+.++.++.+.....++..
T Consensus 59 Di~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 98 (103)
T d1r3jc_ 59 DLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (103)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333444555666667778888888887776543
Done!