RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 009116
(543 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 207 bits (529), Expect = 4e-60
Identities = 122/408 (29%), Positives = 197/408 (48%), Gaps = 34/408 (8%)
Query: 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQF 106
R + ES+ ++ GL G +I + + FF+YLLPPI+ +AG+ + ++ F
Sbjct: 33 RAVPESVLLIVYGLLVGGIIKASPHIDP---PTLDSSYFFLYLLPPIVLDAGYFMPQRNF 89
Query: 107 FRNFMTIMLFGAVGTLISFVIISAG--AVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164
F N +I++F VGTLI+ +I + + + D L G++ +A D V
Sbjct: 90 FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAV 149
Query: 165 LQVLNQ-DETPLLYSLVFGEGVVNDATSVVLFNAIQSF---DLSHINLSIALKFVGSFFY 220
L V + LY ++FGE ++NDA +VVL+N F + + + SFF
Sbjct: 150 LAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFV 209
Query: 221 LFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVF 280
+ ++GV+ G L AFI + H E + L++YLSY+ AE +LSGIL +
Sbjct: 210 VTCGGLLVGVVFGFLVAFITRFT---HHIRQIEPLFVFLISYLSYLFAETLHLSGILALI 266
Query: 281 FCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD---IEKWRVVRDS 337
FCGI M Y N++ S+ T K+ LS ++E IF+++G+ + W V
Sbjct: 267 FCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFV--- 323
Query: 338 PGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVS 397
L ++ R V LS+++N + +I K QL I++AGL RGAV+
Sbjct: 324 --------VATLSFCVIYRVLGVRTLSWITNEFRP---VEIPYKDQLVIFYAGL-RGAVA 371
Query: 398 MALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRIL 445
ALA + +T+T+ VV F+ + G +PLV +L
Sbjct: 372 FALAL----LLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVL 415
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 157 bits (398), Expect = 2e-42
Identities = 94/420 (22%), Positives = 177/420 (42%), Gaps = 23/420 (5%)
Query: 52 SITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFM 111
+ + + L G++ S L +LF + L ++F G ++ ++ R +
Sbjct: 29 LLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWR 88
Query: 112 TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD 171
+I++ LI+ + I H+ + + + +GAI + TD V + +
Sbjct: 89 SILVLALPLVLITALGI-GLLAHWL----LPGIPLAAAFLLGAILSPTDPVAVSPIFKRV 143
Query: 172 ETPL-LYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGV 230
P + +++ GE ++ND +VLF + L S+ + F + +LG+
Sbjct: 144 RVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGW-ALLLFLIEALGGILLGL 202
Query: 231 IAGLLSAFIIKKLY-MGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHY 289
+ G L ++++L G S E L +L+A+ +Y+LAE +SGIL V G+V+
Sbjct: 203 LLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEA 262
Query: 290 T-WHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAIL 348
+ S+R+ + L F+ +F+ +G + + +
Sbjct: 263 VRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALG-------LLGLLVA 315
Query: 349 LGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSS 408
L VLL R +VF SNL + + +++L + WAG RG VS+ALA
Sbjct: 316 LVAVLLARPLWVFLSLKGSNLKLRD---PLPWRERLFLSWAG-PRGVVSLALA---LLIP 368
Query: 409 GHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIV 468
+++ V+LFS +V GL PL + L S ++ + ++ IV
Sbjct: 369 LELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAKEILGARRAQAAIV 428
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 140 bits (356), Expect = 3e-37
Identities = 92/357 (25%), Positives = 159/357 (44%), Gaps = 38/357 (10%)
Query: 83 DLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIG 142
++ LP ++F AG ++ ++ +N +I+L +G LI F++ + + I
Sbjct: 48 EVLAELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLL--GLLLALLGGLGIP 105
Query: 143 TLKIGDYLAIGAIFAATDSVCTLQVL-NQDETP-LLYSLVFGEGVVNDATSVVLFNAIQS 200
+ + L GA +AT V L +L + L +L+ GE V+NDA +VVL + +
Sbjct: 106 ---LLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLA 162
Query: 201 FDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILM 260
LS + F + + +LG++ G L I + R EV L++ +
Sbjct: 163 L-AGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDREL---EVLLVLAL 218
Query: 261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLY 320
A L+ +LAEL LSGIL F G+V+S+Y + N + F+
Sbjct: 219 ALLAALLAELLGLSGILGAFLAGLVLSNYAFANELSEK------LEPFGYGLFLPLFFVS 272
Query: 321 VGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGL 380
VG+ + + + +LL +LLG+ VF L+ L + L
Sbjct: 273 VGLSL-------DLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLL---------GLSL 316
Query: 381 KQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLM 437
++ L + + GL RGAVS+ALA + G + + T + VVL +T++ L+
Sbjct: 317 REALIVGFGGLQRGAVSLALA-----AIGLQLGLIDRELYTLLVAVVLLTTLLKPLL 368
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 96.9 bits (241), Expect = 3e-21
Identities = 88/380 (23%), Positives = 165/380 (43%), Gaps = 36/380 (9%)
Query: 80 FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQM 139
++ LPP++F A ++ NF I L V+++ V F
Sbjct: 46 LDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIA-----FLLVVVTTVVVGFSLNW 100
Query: 140 NIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPL-LYSLVFGEGVVNDATSVVLFNAI 198
+G + + L +GA+ + TD+V L P L L+ GE ++ND ++V+F
Sbjct: 101 ILG-IPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVF--- 156
Query: 199 QSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGR-HSTDREVALM 257
+ ++ + L + + F + G+ AGL ++ +L + E+AL
Sbjct: 157 -AIAVA-VALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALT 214
Query: 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTK---HAF-ATLSFVA 313
IL + ++LAE F+ SG++ V G+++++Y S TT+ F + + F+
Sbjct: 215 ILAPFAGFLLAERFHFSGVIAVVAAGLILTNY---GRDFSMSPTTRLIALDFWSVIVFLV 271
Query: 314 EIFIFLYVGMDALDI--EKWRVVRDSPGKSV---GVSAILLGLVLLGRAAFVFPLSFLSN 368
IF+ +G+ W+ + +P + +A ++ V+ F++ + SN
Sbjct: 272 NGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMT-YVRFLWTMKPFSN 330
Query: 369 LTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNA-----IMITST 423
K + G + + + WAGL RGA+ +ALA S + L G A ++
Sbjct: 331 RFLKKKPMEFGTRWKHVVSWAGL-RGAIPLALAL----SFPNQLLSGMAFPARYELVFLA 385
Query: 424 ITVVLFSTVVFGLMTQPLVR 443
V+LFS +V G+ V+
Sbjct: 386 AGVILFSLLVQGISLPIFVK 405
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 59.0 bits (143), Expect = 3e-09
Identities = 69/315 (21%), Positives = 128/315 (40%), Gaps = 43/315 (13%)
Query: 93 IIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAI 152
I+F+ GF + F + +G LI+ + A + L + L I
Sbjct: 71 ILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLN------LDWLEGLLI 124
Query: 153 GAIFAATDSVCTLQVLN-QDETPLLYSLVFGEGVVNDATSVVL---FNAIQSFDLSHINL 208
GAI +TD+ +L ++ + S + E ND +V L + + ++++
Sbjct: 125 GAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSW 184
Query: 209 SIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAY--LSYM 266
L F+ F +LG+ G L +I ++ + D + ++ +A L +
Sbjct: 185 GFLLGFLQQFG----LGLLLGLGGGKLLLQLINRI-----NLDSGLYPILALAGGLLIFS 235
Query: 267 LAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL 326
L SGIL V+ G+++ N +R F L+++A+I +FL +G+
Sbjct: 236 LTGAIGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFLVLGLLVT 290
Query: 327 DIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTI 386
+ + + AILL L ++ PL+ L + +++L +
Sbjct: 291 PSQLLPIA---------IPAILLSLWMI---FVARPLAVFLGLIPFRFN----RREKLFV 334
Query: 387 WWAGLMRGAVSMALA 401
W GL RGAV + LA
Sbjct: 335 SWVGL-RGAVPIILA 348
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 57.1 bits (139), Expect = 1e-08
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 47/226 (20%)
Query: 187 NDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKK---- 242
ND +V L + ++ ++ F+ F F ++G++ G L ++ +
Sbjct: 161 NDPMAVFLTITLIEL-ITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP 219
Query: 243 ---LYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 299
LY L++ A L + L SG L V+ G+V+ N R
Sbjct: 220 AEGLYP---------ILVLAGALLIFALTAALGGSGFLAVYLAGLVLG-----NRPIRHR 265
Query: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGK--SVGVSAILLGLVLLGRA 357
+ F L+++A+I +FL +G+ +P + + + A+LL L L+
Sbjct: 266 HSILRFFDGLAWLAQIGMFLVLGLLV-----------TPSRLLDIALPALLLALFLI--- 311
Query: 358 AFVF-PLS-FLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALA 401
V PL+ FLS L + + L+++L I W GL RGAV + LA
Sbjct: 312 -LVARPLAVFLSLLPFRFN-----LREKLFISWVGL-RGAVPIVLA 350
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 45.7 bits (109), Expect = 4e-05
Identities = 81/438 (18%), Positives = 168/438 (38%), Gaps = 70/438 (15%)
Query: 28 LFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVI---LLTTNGTSSHVLMFSEDL 84
+ LL +++G L + + ++ L GI++ L SS ++ +L
Sbjct: 10 QLLILLLVAVILGPLFKRLG-----LPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL 64
Query: 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTI-MLFGAVGTLISFVIISAGAVHFFKQMNIGT 143
++LL F G + ++ + ++ + VG F++ +
Sbjct: 65 GVVFLL----FLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------G 114
Query: 144 LKIGDYLAIGAIFAATDSVCTLQVL---NQDETPLLYSLVFGEGVVNDATSVVLFNAIQS 200
L + L +GA A + + L++L +T L+ G V +D +++L + +
Sbjct: 115 LSLIAALFLGAALALSSTAIVLKILMELGLLKTREG-QLILGALVFDDIAAILLLAIVPA 173
Query: 201 FDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL---YMGRHSTDREVALM 257
VG L +A + LL +++ L S++ + +
Sbjct: 174 LAGGGSG------SVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFV 227
Query: 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMS--HYTWHNVTESSRVTTKHAFATLSFVAEI 315
+L+ + LAEL LS IL F G+++S Y H + E F +
Sbjct: 228 LLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEK----------IEPFGDGL 277
Query: 316 FI---FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK 372
FI F+ VGM +LD+ +++ + +L+ L +LG+ + + L
Sbjct: 278 FIPLFFISVGM-SLDLGV-------LLENLLLILLLVALAILGKILGAYLAARL------ 323
Query: 373 SSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTV 432
+G ++L + L+R A + ++T+ + + + +T
Sbjct: 324 -----LGFSKRLALGIGLLLRQGGEFAFVLAGIALGSAI----SEALLTAVVILSMITTP 374
Query: 433 VFGLMTQPLVRILLPSSK 450
+ L+T L++ LL S+
Sbjct: 375 ILPLLTPILLKRLLKKSE 392
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2
(CPA2) family. [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 273
Score = 43.8 bits (104), Expect = 1e-04
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 26/221 (11%)
Query: 74 SSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAV 133
V +E I L+ F G ++ ++ ++ G + L+ V++
Sbjct: 40 VEGVNHLAE-FGVILLM----FLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLG 94
Query: 134 HFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYS----LVFGEGVVNDA 189
H L +G + IG I A + + +QVL E LL + V G + D
Sbjct: 95 HLL------GLALGAAVVIGIILALSSTAVVVQVLK--ERGLLKTPFGQTVLGILLFQDI 146
Query: 190 TSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHS 249
V L + S +AL + +L +L L +++ R S
Sbjct: 147 AVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGR--WLLRPVLRLTAELRPS 204
Query: 250 ---TDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMS 287
T + LM AY A+L LS L F G+V+S
Sbjct: 205 ELFTAGSLLLMFGSAYF----ADLLGLSMALGAFLAGVVLS 241
>gnl|CDD|206215 pfam14045, YIEGIA, YIEGIA protein. This family includes the B.
subtilis YphB protein, which is functionally
uncharacterized. Its expression is regulated by the
sporulation transcription factor sigma-F, however it is
not essential for sporulation or germination. This is
not a homologue of E. coli YphB, which belongs to
pfam01263. This family of proteins is found in bacteria.
Proteins in this family are typically between 276 and
300 amino acids in length and contain a conserved YIEGIA
motif.
Length = 286
Score = 36.1 bits (84), Expect = 0.034
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 208 LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL 243
L I + S Y+ S ++G+IAGL+ I+K+L
Sbjct: 112 LVILTALLTSLAYILFQSIIIGIIAGLILFLILKRL 147
>gnl|CDD|147874 pfam05957, DUF883, Bacterial protein of unknown function (DUF883).
This family consists of several hypothetical bacterial
proteins of unknown function.
Length = 94
Score = 31.0 bits (71), Expect = 0.35
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 332 RVVRDSPGKSVGVSA---ILLGLVLLGR 356
V ++P ++VG++A +LLGL LL R
Sbjct: 67 DYVHENPWQAVGIAAGVGLLLGL-LLAR 93
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 32.4 bits (74), Expect = 0.76
Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 12/187 (6%)
Query: 185 VVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIK-KL 243
+ ND +V + + L + +GS LF S L +I L+ +
Sbjct: 115 LTNDVEAVSNLVSTVLVLVFTSILLL----IGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 244 YMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVF-FCGIVMSHYTWHNVTESSRVTT 302
+ R S + + L+ L E LSGI + F + E R
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLE--SLSGIRVIKAFGAEDRELKRFEEANEELRRAN 228
Query: 303 KHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFP 362
A + +A + + L L + S+ V A+ ++ L R + P
Sbjct: 229 LRASRLEALLAPLMLLLSSLGTVLVL--ALGGFLVLSGSLTVGALAAFILYLLR--LLTP 284
Query: 363 LSFLSNL 369
+ L +
Sbjct: 285 ILQLGEV 291
>gnl|CDD|226941 COG4575, ElaB, Uncharacterized conserved protein [Function
unknown].
Length = 104
Score = 30.0 bits (68), Expect = 1.0
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 4/26 (15%)
Query: 334 VRDSPGKSVGVSA---ILLGLVLLGR 356
VR++P + VGV+A +LLGL LL R
Sbjct: 79 VRENPWQGVGVAAAVGLLLGL-LLSR 103
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 29.8 bits (67), Expect = 2.3
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 218 FFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELF-YLSGI 276
+F LF+ L +I L+ +F + + L + + + +L+ F
Sbjct: 86 YFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSF 145
Query: 277 LTVFFCGIVMSHYT 290
L F +++ + T
Sbjct: 146 LLFFHLYLILKNIT 159
>gnl|CDD|171522 PRK12468, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 386
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 262 YLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIF 318
+ S LAEL L IL G V + WHN + R+ A L + IF
Sbjct: 138 FSSQALAEL--LKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIF 192
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter.
This family represents a high-affinity plasma-membrane
choline transporter in C.elegans which is thought to be
rate-limiting for ACh synthesis in cholinergic nerve
terminals.
Length = 327
Score = 29.1 bits (66), Expect = 5.3
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 215 VGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELF--- 271
+G F LF+ + + GLL+ + Y + L +SY++A +F
Sbjct: 248 LGGFV-LFLGKLFVSALTGLLAYLWLT--YTDNSDLSYYAVPVALAFLISYLIASVFMSV 304
Query: 272 YLSGILTVFFC 282
Y SG+ T+F C
Sbjct: 305 YESGVDTIFVC 315
>gnl|CDD|221310 pfam11913, DUF3431, Protein of unknown function (DUF3431). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 291 to 390 amino acids in
length. This protein has a conserved NLRC sequence
motif.
Length = 220
Score = 29.1 bits (66), Expect = 5.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 252 REVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSH-YTWHN 293
RE M YL+Y++ +L TVF + SH + WHN
Sbjct: 46 REA-----MVYLTYIIDHYDHLPDT-TVF----IHSHRFAWHN 78
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 29.2 bits (66), Expect = 5.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 40 GHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHV 77
G LEE + +N+S++AL G VI T+G S+H+
Sbjct: 244 GQTLEEAKKINKSLSAL------GNVINALTDGKSTHI 275
>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin.
Length = 89
Score = 27.1 bits (61), Expect = 6.2
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 100 QVKKKQFFRNFMTIMLFGAVGTLISFVIISA 130
++K+K +++N ++ G V ++ +II
Sbjct: 56 KLKRKMWWKNMKLKIILGLVVLILILIIIIV 86
>gnl|CDD|190601 pfam03323, GerA, Bacillus/Clostridium GerA spore germination
protein.
Length = 468
Score = 28.9 bits (66), Expect = 7.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 192 VVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTM--LGVIAGLL 235
VV AI SF + LSIA++ + F L +A+ G+I GLL
Sbjct: 376 VVALTAIASFTIPSYELSIAIRLL-RFPLLILAALFGLYGIILGLL 420
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 28.4 bits (64), Expect = 8.9
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 205 HINLSIALKFVGSF--FYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAY 262
I L S L + V+A LL A+ + + DR+ A
Sbjct: 223 QILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWAR------ 276
Query: 263 LSYMLAELFYLSGI-LTVFFCGIVMSHY 289
+LF S I L + F +++
Sbjct: 277 ------KLFKYSIIYLALLFVALLIDSL 298
>gnl|CDD|119322 cd06580, TM_PBP1_transp_TpRbsC_like, Transmembrane subunit (TM) of
Treponema pallidum (Tp) RbsC-1, RbsC-2 and related
proteins. This is a functionally uncharacterized
subgroup of TMs which belong to a larger group of TMs of
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporters, which are mainly involved
in the uptake of branched-chain amino acids (AAs) or in
the uptake of monosaccharides including ribose,
galactose, and arabinose, and which generally bind type
1 PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP, which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction.
Length = 234
Score = 28.2 bits (64), Expect = 9.4
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 208 LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYML 267
L + L GS +A+ + G + LL A + K +G + EV +++ Y++ L
Sbjct: 40 LYLGLPATGSLPLGLLAAALAGALWALLPALL--KAKLGVN----EVISGLMLNYIALGL 93
Query: 268 AELFYLSGILTVFFCGIVMSHYTW 291
L +L V +++ +
Sbjct: 94 TSYLLLLALLLVILVWLLLYRTRF 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.408
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,763,548
Number of extensions: 2819261
Number of successful extensions: 4875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4728
Number of HSP's successfully gapped: 280
Length of query: 543
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 441
Effective length of database: 6,413,494
Effective search space: 2828350854
Effective search space used: 2828350854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.3 bits)