RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 009116
         (543 letters)



>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 447

 Score = 26.7 bits (59), Expect = 9.4
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 9/35 (25%)

Query: 261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVT 295
           AYLSY L           +   G + + + W N T
Sbjct: 244 AYLSYSLG---------ALSMMGFIATCFVWFNNT 269


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,911,145
Number of extensions: 85978
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 19
Length of query: 543
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 453
Effective length of database: 1,171,896
Effective search space: 530868888
Effective search space used: 530868888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.4 bits)