Query 009119
Match_columns 543
No_of_seqs 246 out of 3119
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 20:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0472 Leucine-rich repeat pr 100.0 1.1E-56 2.4E-61 395.0 -5.4 533 1-539 1-545 (565)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-46 3.4E-51 407.5 35.0 504 9-538 69-589 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.5E-45 3.3E-50 399.7 35.7 484 44-541 68-568 (968)
4 KOG0472 Leucine-rich repeat pr 100.0 4.8E-43 1E-47 309.1 -11.4 456 5-511 64-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 2.1E-38 4.5E-43 292.7 7.3 380 47-506 54-447 (873)
6 KOG4194 Membrane glycoprotein 100.0 6.8E-38 1.5E-42 289.3 9.1 380 12-460 55-448 (873)
7 KOG0618 Serine/threonine phosp 100.0 4.6E-38 9.9E-43 305.5 -2.8 478 13-532 2-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.5E-35 5.5E-40 286.6 -1.6 461 11-531 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.3E-35 9.3E-40 273.2 -0.4 366 113-539 6-380 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 7.2E-34 1.6E-38 265.1 1.3 360 8-439 6-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 5.7E-22 1.2E-26 215.7 26.8 168 358-531 726-903 (1153)
12 KOG4237 Extracellular matrix p 99.9 2.3E-25 5E-30 197.3 -0.6 410 12-461 49-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.8E-21 3.9E-26 211.8 24.5 322 44-413 557-903 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 4.2E-22 9.1E-27 200.9 17.9 258 11-313 203-460 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 2.9E-26 197.3 18.4 259 184-512 201-459 (788)
16 KOG4237 Extracellular matrix p 99.9 2.4E-24 5.1E-29 191.0 -4.0 388 10-437 68-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.4E-20 3E-25 191.3 14.1 245 10-310 179-427 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 2.9E-24 184.2 15.0 245 209-511 180-428 (754)
19 KOG0617 Ras suppressor protein 99.7 4.5E-20 9.8E-25 144.9 -3.7 166 375-542 28-194 (264)
20 KOG0617 Ras suppressor protein 99.7 2E-19 4.3E-24 141.4 -4.5 156 44-200 32-189 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 3.8E-17 8.1E-22 155.3 6.4 177 357-533 108-319 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 3E-16 6.5E-21 149.1 7.9 245 49-311 2-291 (319)
23 KOG0532 Leucine-rich repeat (L 99.4 6.3E-15 1.4E-19 137.8 -1.7 209 2-247 43-251 (722)
24 KOG1909 Ran GTPase-activating 99.4 7.1E-14 1.5E-18 123.3 0.7 177 44-220 29-254 (382)
25 KOG1259 Nischarin, modulator o 99.4 1.9E-13 4.2E-18 117.9 2.6 131 403-538 284-416 (490)
26 KOG0532 Leucine-rich repeat (L 99.4 1.8E-14 3.9E-19 134.8 -5.2 187 142-330 80-266 (722)
27 KOG1909 Ran GTPase-activating 99.3 1.6E-13 3.6E-18 121.0 0.9 132 379-510 156-310 (382)
28 PF14580 LRR_9: Leucine-rich r 99.3 4.8E-13 1E-17 110.9 3.2 124 400-527 16-146 (175)
29 COG4886 Leucine-rich repeat (L 99.3 2.1E-12 4.5E-17 126.2 7.2 179 44-224 115-294 (394)
30 COG4886 Leucine-rich repeat (L 99.3 2.7E-12 5.9E-17 125.4 7.8 197 49-247 97-294 (394)
31 PF14580 LRR_9: Leucine-rich r 99.3 2.4E-12 5.2E-17 106.8 5.3 121 44-166 18-146 (175)
32 KOG3207 Beta-tubulin folding c 99.3 5.9E-13 1.3E-17 120.9 0.8 203 64-266 117-339 (505)
33 KOG1259 Nischarin, modulator o 99.3 1.9E-12 4.1E-17 111.9 3.1 225 87-315 178-416 (490)
34 KOG3207 Beta-tubulin folding c 99.2 2.7E-12 5.8E-17 116.7 1.9 181 354-534 143-339 (505)
35 KOG0531 Protein phosphatase 1, 99.0 4.3E-11 9.4E-16 116.9 -0.4 243 66-313 70-320 (414)
36 KOG4658 Apoptotic ATPase [Sign 99.0 5.1E-10 1.1E-14 116.8 6.5 104 45-148 545-653 (889)
37 KOG0531 Protein phosphatase 1, 99.0 8.8E-11 1.9E-15 114.7 -0.3 217 44-266 71-290 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 74.4 3.5 58 428-485 2-59 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 9.4E-10 2E-14 74.9 2.9 61 403-463 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.8 3.4E-09 7.4E-14 110.7 6.1 262 45-308 523-804 (889)
41 KOG1859 Leucine-rich repeat pr 98.8 6.8E-11 1.5E-15 114.4 -6.2 198 5-221 83-293 (1096)
42 KOG2120 SCF ubiquitin ligase, 98.8 2.7E-10 5.8E-15 98.7 -3.4 171 46-217 186-373 (419)
43 COG5238 RNA1 Ran GTPase-activa 98.6 1.4E-08 3E-13 87.1 2.2 182 356-537 29-258 (388)
44 KOG1859 Leucine-rich repeat pr 98.6 7.8E-10 1.7E-14 107.3 -7.5 127 380-511 164-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 4.1E-09 9E-14 91.5 -3.1 175 10-196 186-375 (419)
46 PLN03150 hypothetical protein; 98.5 2.9E-07 6.4E-12 94.3 9.3 84 405-488 420-503 (623)
47 PLN03150 hypothetical protein; 98.5 4.2E-07 9E-12 93.2 8.8 105 382-486 420-526 (623)
48 COG5238 RNA1 Ran GTPase-activa 98.5 1.9E-07 4.1E-12 80.3 5.2 176 45-220 30-255 (388)
49 PF12799 LRR_4: Leucine Rich r 98.5 1.2E-07 2.6E-12 58.7 2.7 39 499-537 2-40 (44)
50 KOG4341 F-box protein containi 98.4 1.3E-08 2.8E-13 92.8 -3.5 131 379-509 293-437 (483)
51 KOG4579 Leucine-rich repeat (L 98.4 6.3E-08 1.4E-12 74.2 0.5 107 47-153 29-139 (177)
52 KOG4579 Leucine-rich repeat (L 98.4 3.6E-08 7.9E-13 75.5 -1.3 111 68-178 27-141 (177)
53 KOG4341 F-box protein containi 98.3 4.1E-08 9E-13 89.5 -1.9 154 379-532 267-437 (483)
54 PF13306 LRR_5: Leucine rich r 98.3 1.7E-06 3.7E-11 69.7 6.8 121 398-524 7-129 (129)
55 KOG1644 U2-associated snRNP A' 98.3 1.2E-06 2.6E-11 72.1 5.6 82 405-488 44-126 (233)
56 KOG2982 Uncharacterized conser 98.3 3.6E-07 7.8E-12 79.7 2.5 215 47-261 47-287 (418)
57 PRK15386 type III secretion pr 98.2 8.4E-06 1.8E-10 76.7 10.6 136 356-509 51-188 (426)
58 PRK15386 type III secretion pr 98.2 7.8E-06 1.7E-10 76.9 10.2 134 376-531 48-187 (426)
59 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.6E-11 53.1 4.4 38 46-83 2-39 (44)
60 KOG1644 U2-associated snRNP A' 98.2 1.9E-06 4.1E-11 71.0 5.1 129 359-488 21-153 (233)
61 PF13306 LRR_5: Leucine rich r 98.2 4.3E-06 9.3E-11 67.3 6.6 118 418-541 3-122 (129)
62 KOG2982 Uncharacterized conser 98.1 9.6E-07 2.1E-11 77.1 1.7 178 357-534 71-262 (418)
63 KOG3665 ZYG-1-like serine/thre 98.1 5.7E-06 1.2E-10 84.7 5.8 82 44-126 147-232 (699)
64 KOG3665 ZYG-1-like serine/thre 97.9 7.9E-06 1.7E-10 83.7 4.0 148 380-529 122-283 (699)
65 KOG2123 Uncharacterized conser 97.5 3.4E-06 7.4E-11 73.0 -4.9 99 380-481 19-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.5 5.4E-05 1.2E-09 65.5 2.1 34 402-437 42-75 (260)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.5E-09 62.7 1.9 61 380-441 43-105 (260)
68 KOG2123 Uncharacterized conser 97.2 5.4E-05 1.2E-09 65.8 -1.5 81 9-104 19-101 (388)
69 KOG1947 Leucine rich repeat pr 96.5 0.0012 2.6E-08 66.8 1.7 132 5-147 184-331 (482)
70 PF00560 LRR_1: Leucine Rich R 96.4 0.001 2.2E-08 34.0 0.2 17 523-539 2-18 (22)
71 PF13504 LRR_7: Leucine rich r 96.2 0.0022 4.8E-08 30.3 0.9 17 521-537 1-17 (17)
72 smart00369 LRR_TYP Leucine-ric 96.2 0.0038 8.3E-08 33.5 1.9 23 520-542 1-23 (26)
73 smart00370 LRR Leucine-rich re 96.2 0.0038 8.3E-08 33.5 1.9 23 520-542 1-23 (26)
74 PF00560 LRR_1: Leucine Rich R 96.2 0.0024 5.2E-08 32.6 1.0 19 500-518 2-20 (22)
75 KOG1947 Leucine rich repeat pr 96.1 0.0014 3.1E-08 66.2 -0.1 34 379-412 187-223 (482)
76 KOG4308 LRR-containing protein 96.0 4.9E-05 1.1E-09 74.5 -10.4 177 359-535 89-304 (478)
77 PF13504 LRR_7: Leucine rich r 95.3 0.01 2.2E-07 28.0 1.3 15 499-513 2-16 (17)
78 KOG4308 LRR-containing protein 95.3 0.00026 5.7E-09 69.5 -8.6 180 11-198 89-304 (478)
79 KOG3864 Uncharacterized conser 94.7 0.003 6.4E-08 52.7 -2.6 80 428-507 102-185 (221)
80 KOG0473 Leucine-rich repeat pr 94.2 0.0013 2.9E-08 55.9 -5.9 87 63-149 37-123 (326)
81 KOG0473 Leucine-rich repeat pr 94.1 0.0018 3.8E-08 55.2 -5.3 84 88-171 39-122 (326)
82 KOG3864 Uncharacterized conser 91.2 0.033 7.2E-07 46.7 -1.5 83 404-486 102-187 (221)
83 smart00369 LRR_TYP Leucine-ric 91.0 0.19 4.2E-06 26.7 1.9 21 427-447 2-22 (26)
84 smart00370 LRR Leucine-rich re 91.0 0.19 4.2E-06 26.7 1.9 21 427-447 2-22 (26)
85 smart00364 LRR_BAC Leucine-ric 90.5 0.19 4.1E-06 26.6 1.4 18 521-538 2-19 (26)
86 PF13516 LRR_6: Leucine Rich r 86.9 0.24 5.2E-06 25.7 0.4 15 520-534 1-15 (24)
87 smart00365 LRR_SD22 Leucine-ri 85.1 0.8 1.7E-05 24.4 1.8 16 521-536 2-17 (26)
88 smart00368 LRR_RI Leucine rich 76.0 2.2 4.8E-05 23.1 1.7 15 521-535 2-16 (28)
89 smart00367 LRR_CC Leucine-rich 72.9 2.7 5.8E-05 22.2 1.5 16 520-535 1-17 (26)
90 KOG4242 Predicted myosin-I-bin 69.0 20 0.00043 35.0 7.0 16 402-417 439-454 (553)
91 KOG3763 mRNA export factor TAP 64.5 4.3 9.4E-05 40.1 2.0 64 448-511 215-283 (585)
92 KOG3763 mRNA export factor TAP 64.2 2.8 6.1E-05 41.3 0.7 61 380-440 218-283 (585)
93 KOG4242 Predicted myosin-I-bin 61.4 47 0.001 32.6 8.0 39 228-266 438-481 (553)
94 PF01462 LRRNT: Leucine rich r 53.7 8.5 0.00018 20.9 1.2 18 11-28 10-27 (28)
95 PRK09718 hypothetical protein; 49.7 42 0.0009 33.1 5.7 34 477-513 210-243 (512)
96 smart00013 LRRNT Leucine rich 29.2 34 0.00074 19.3 1.1 19 12-30 11-29 (33)
97 PRK09718 hypothetical protein; 27.9 1.1E+02 0.0025 30.3 4.9 16 475-490 228-243 (512)
98 PF03382 DUF285: Mycoplasma pr 23.7 8.2 0.00018 30.2 -2.9 56 59-116 27-88 (120)
99 TIGR00864 PCC polycystin catio 20.6 76 0.0016 38.9 2.7 31 386-416 1-32 (2740)
No 1
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-56 Score=395.05 Aligned_cols=533 Identities=45% Similarity=0.674 Sum_probs=474.9
Q ss_pred ChHHHHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcC
Q 009119 1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL 80 (543)
Q Consensus 1 ~~~~~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l 80 (543)
+.+..+++++..+++++++.+.++|..+++..-...+.+.||+...+.++.+++|.++.+...+.++.-+.++++.+|.+
T Consensus 1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l 80 (565)
T KOG0472|consen 1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL 80 (565)
T ss_pred CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence 46788999999999999999999999999987777889999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCC
Q 009119 81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160 (543)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~ 160 (543)
..+|++++.+..++.++.++|++..+|+.++.+.++.++++++|.+..+++.++.+..++.++..+|.+.++|.++..+.
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCC
Q 009119 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (543)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 240 (543)
++..+++.+|.+.......+. ++.|++++...|-++.+|+.++.+.+|.-|++..|++..+| .|.+|..|++++++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence 999999999999998888666 99999999999999999999999999999999999999998 7899999999999999
Q ss_pred CCCCCCcccc-CCCCCCEEeCCCCcccccchhhhcce-ecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCccccccc
Q 009119 241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (543)
Q Consensus 241 ~l~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 318 (543)
.+..+|++.. .++++.+||+..|+++.+|...+... ++++|+++|.++.+|..++++ +|+.|.+.||+++.+...+.
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 9999988655 88999999999999999999998877 999999999999999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHhccCCCCcccccccchhhH------HHhhhhcccccceeeeCCCCCCCCChhhhccCC---ccEEEcCC
Q 009119 319 NGPTPALLKYLRSRLPENEDSEASTTKEDL------ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR 389 (543)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~ 389 (543)
.++....+.+++.................. .........+.+.+++++-.++.+|...+.... ++.++++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 999999999998866544332221111100 001111224668899999999999998887655 88999999
Q ss_pred CcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCC
Q 009119 390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (543)
Q Consensus 390 ~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 469 (543)
|++..+|..+..+..+.+.-+..++..++.+..+..+++|..|++++|.+.+++.+ +...-+|+.++++.|.+... +.
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P~ 475 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-PE 475 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-hH
Confidence 99999998888777766555555556677777789999999999999999999987 55667799999999987653 55
Q ss_pred CCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCCCC
Q 009119 470 PFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539 (543)
Q Consensus 470 ~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 539 (543)
++.....++.+..++|++.+++.. +..+.+|+.||+.+|+++.+|..+++|++|+.|++.||+|+ .|++
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 667778888888999999988766 89999999999999999999999999999999999999999 5543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-46 Score=407.49 Aligned_cols=504 Identities=27% Similarity=0.329 Sum_probs=351.7
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccc-cchHH-hcCCCCCCEEEcCCCcCc-ccch
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNKLS-ELPA 85 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~l~~~~l~-~~~~ 85 (543)
+.+++||++++++.......+.. +++|+.|++++|.+. .+|.. +..+++|++|++++|.+. .+|.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~------------l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFR------------LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhC------------CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence 35677788877776433333333 567788888877776 56643 447778888888777765 3332
Q ss_pred hhhccCCCCEEEcCCCCCC-CCChhhcccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCcCc-cCCcccccCCCc
Q 009119 86 AIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM 162 (543)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L 162 (543)
..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|
T Consensus 137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 34677777777777766 56667777777777777777765 56667777777777777777766 456677777777
Q ss_pred cEEEecCCcccccchhhhcccccccEEECCCCcCC-cCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCC
Q 009119 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240 (543)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~ 240 (543)
+.|++++|.+.......+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 77777777766444444677777777777777764 46666777777777777777765 45666667777777777777
Q ss_pred CCC-CCCccccCCCCCCEEeCCCCcccccchh-hh-cceecEEEccCCCCCC-CChhhcCCCCCceeecCCCCcCccccc
Q 009119 241 ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-AC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSS 316 (543)
Q Consensus 241 ~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~-~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~ 316 (543)
.+. .+|..+..+++|+.|++++|.+...... .. ...|+.|++++|.+.+ +|..++.+++|+.|++++|.+......
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 766 5666677777777777777776643222 21 2347777777777765 666677777777777777766432111
Q ss_pred ccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCChhhhccCCccEEEcCCCcCcc-
Q 009119 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE- 394 (543)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~- 394 (543)
.+... . .+........ .............++++.+++++|.+. .+|..+..++.|+.+++++|.++.
T Consensus 375 ~~~~~--------~-~L~~L~l~~n--~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 375 GLCSS--------G-NLFKLILFSN--SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred hHhCc--------C-CCCEEECcCC--EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 11000 0 0000000000 000000111123467888888888776 567777778888888888888876
Q ss_pred CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCC
Q 009119 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474 (543)
Q Consensus 395 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 474 (543)
++..+..+++|+.|++++|.+.+..+.. ...++|+.|++++|++.+.....+..+++|++|++++|.+....+..+..+
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 5556677888888888888877655443 345788999999998887666668888999999999999888888888889
Q ss_pred CcCceeecCCCccc-cCchhhhccCCCcEEeCCCCccc-cccccccCCCCCCeEeCCCCcCC-cCCC
Q 009119 475 PHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPP 538 (543)
Q Consensus 475 ~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~ 538 (543)
++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|..+..+++|+.+++++|++. .+|+
T Consensus 523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999888 56778888999999999999987 56888889999999999999887 4664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-45 Score=399.75 Aligned_cols=484 Identities=28% Similarity=0.368 Sum_probs=395.6
Q ss_pred ccCccEEEcCccccc-cchHHhcCCCCCCEEEcCCCcCc-ccchhh-hccCCCCEEEcCCCCCC-CCChhhcccCCccEE
Q 009119 44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKF 119 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~-~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L 119 (543)
..+++.|+++++.+. .++..|..+++|+.|++++|.+. .+|..+ ..+.+|++|++++|.+. .+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999887 55788999999999999999987 687755 48999999999999987 4443 468999999
Q ss_pred ecCCCCcc-cccccccCCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCC
Q 009119 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (543)
Q Consensus 120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (543)
++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+.......+..+++|++|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999998 67888999999999999999987 67888999999999999999987655566899999999999999985
Q ss_pred -cCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCCCCC-CCCccccCCCCCCEEeCCCCcccccchh-hh
Q 009119 198 -GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-AC 273 (543)
Q Consensus 198 -~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~ 273 (543)
.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+. ..
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 68888999999999999999887 67888999999999999999887 6788899999999999999998744333 22
Q ss_pred -cceecEEEccCCCCCC-CChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHh
Q 009119 274 -QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (543)
Q Consensus 274 -~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (543)
...|++|++++|.+.+ +|..+..+++|+.|++++|.+.......+.. .. .+...+....... .....
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--------~~-~L~~L~Ls~n~l~--~~~p~ 374 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK--------HN-NLTVLDLSTNNLT--GEIPE 374 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC--------CC-CCcEEECCCCeeE--eeCCh
Confidence 2359999999999887 7778999999999999999876322111110 00 0000000000000 00001
Q ss_pred hhhcccccceeeeCCCCCC-CCChhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCC
Q 009119 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (543)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L 429 (543)
.......++.+++.+|.+. .+|..+..+++|+.|++++|.++. +|..+..++.|+.|++++|.+++..+..+..+++|
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 1112356788888888876 677788888999999999998875 77788899999999999999988777777889999
Q ss_pred CEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc-cCchhhhccCCCcEEeCCCC
Q 009119 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQN 508 (543)
Q Consensus 430 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~ 508 (543)
+.|++++|++.+.....+ ..++|+.|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus 455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533 (968)
T ss_pred cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence 999999998876444433 4589999999999998888888899999999999999998 67888999999999999999
Q ss_pred cccc-ccccccCCCCCCeEeCCCCcCC-cCCCCcC
Q 009119 509 SLQS-IPEGFKNLTSLTELDLSDNNIS-ALPPELV 541 (543)
Q Consensus 509 ~l~~-l~~~l~~~~~L~~L~l~~~~~~-~~~~~~~ 541 (543)
.++. +|..+..+++|+.|++++|+++ .+|+.+.
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred cccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence 9984 5888999999999999999998 6776553
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.8e-43 Score=309.14 Aligned_cols=456 Identities=28% Similarity=0.398 Sum_probs=383.5
Q ss_pred HHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc
Q 009119 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (543)
Q Consensus 5 ~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~ 84 (543)
++....++.++.+++++.++|.++.+ ...++.++.+++++.++|+.+.++..++.+++++|.+..++
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~ 130 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP 130 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC
Confidence 34566788999999999999999977 57789999999999999999999999999999999999999
Q ss_pred hhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccE
Q 009119 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (543)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~ 164 (543)
+.++.+..|+.++..+|.+.++|..+.++.++..+++.+|.++.+|+..-.++.|+++++..|..+.+|..++.+.+|+.
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence 99999999999999999999999999999999999999999999987777799999999999999999999999999999
Q ss_pred EEecCCcccccchhhhcccccccEEECCCCcCCcCchhc-cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC
Q 009119 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (543)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 243 (543)
|++.+|++...+. |.++..|.++.++.|+++.+|... .+++++..||+++|++.++|..+..+++|+.+++++|.++
T Consensus 211 LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 211 LYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred HHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence 9999999999884 999999999999999999998765 4899999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCEEeCCCCcccccchhhhcce----ecEEEc-------cCC---CCCC------CChhhcCCCCCcee
Q 009119 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL-------SNN---SLSG------LPPEIGKMTTLRKL 303 (543)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----L~~L~l-------~~~---~i~~------~~~~l~~~~~L~~L 303 (543)
.+|..++++ .|+.|.+.+|.+..+........ ++++.= +.. .-++ .......+.+.+.|
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 999999999 99999999999886554433221 332211 110 0000 11112334456667
Q ss_pred ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCcc
Q 009119 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (543)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~ 383 (543)
++++-.++.++..+|..+. ..-....+++.|.+.++|..+..+..+.
T Consensus 368 ~~s~~qlt~VPdEVfea~~---------------------------------~~~Vt~VnfskNqL~elPk~L~~lkelv 414 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAK---------------------------------SEIVTSVNFSKNQLCELPKRLVELKELV 414 (565)
T ss_pred cccccccccCCHHHHHHhh---------------------------------hcceEEEecccchHhhhhhhhHHHHHHH
Confidence 7776666666554443221 1235788999999999998877665544
Q ss_pred -EEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCc
Q 009119 384 -KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (543)
Q Consensus 384 -~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (543)
.+.++++.+..+|..+..+++|+.|++++|.+.+++... +.+..|+.|+++.|++...+.. ......++.+-.++|+
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchHH-HhhHHHHHHHHhcccc
Confidence 467777778888888999999999999999888887664 7788899999999988877643 5666788888888899
Q ss_pred CCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 463 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~ 511 (543)
+....+..+..+.+|+.|++.+|.+..+|..++.|++|++|+++||.+.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9998888899999999999999999999999999999999999999988
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-38 Score=292.70 Aligned_cols=380 Identities=25% Similarity=0.332 Sum_probs=249.8
Q ss_pred ccEEEcCccccccch-HHhcCCC--CCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119 47 LQKLILAHNNIEKLK-EDLRNLP--LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (543)
Q Consensus 47 L~~L~l~~~~~~~l~-~~~~~~~--~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (543)
-+.|++++..+..+. +.+..+- .-+.|++++|.+.++ +..|.++++|+.+++..|.++.+|...+-..+++.|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 566888888887663 4455443 345588899888876 446788889999999888888888777777778888888
Q ss_pred CCCccccc-ccccCCCCCCEEEccCCcCccCCc-ccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc
Q 009119 123 SNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (543)
Q Consensus 123 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (543)
+|.++++. +.+..++.|++||++.|.++.++. .|..-.++++|++++|.|+.+....|..+.+|.+|.++.|.++.+|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 88888664 567778888888888888887764 3666688999999999999888888888888888888888888887
Q ss_pred h-hccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCCCCc-cccCCCCCCEEeCCCCcccccchhhhccee
Q 009119 201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (543)
Q Consensus 201 ~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L 277 (543)
. .+.++++|+.|++..|.++.+ ...|.++++|+.+.+..|.+..+-. .|..+.++++|+++.|++..+..
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~------- 286 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE------- 286 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-------
Confidence 6 455688888888888887755 3456666666666666666665432 45556666666666555543322
Q ss_pred cEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccc
Q 009119 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357 (543)
Q Consensus 278 ~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (543)
.++.+++.|+.|+++.|.+..+..
T Consensus 287 --------------g~lfgLt~L~~L~lS~NaI~rih~------------------------------------------ 310 (873)
T KOG4194|consen 287 --------------GWLFGLTSLEQLDLSYNAIQRIHI------------------------------------------ 310 (873)
T ss_pred --------------ccccccchhhhhccchhhhheeec------------------------------------------
Confidence 134555666666666665533311
Q ss_pred ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
....-+++|++|+++.|+++.+++ .|..+..|+.|++++|.+..+....|..+.+|+.|+|++
T Consensus 311 ----------------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 311 ----------------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred ----------------chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 011124556666666666666543 355556666666666666666666666666666666666
Q ss_pred CCCcc---cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCC
Q 009119 437 NPLRQ---VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLS 506 (543)
Q Consensus 437 n~l~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~ 506 (543)
|.+.- -.+.+|.++++|+.|++-||++..+...+|.++++|++|++.+|.|.++ +.+|..+ .|++|-+.
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 65542 2333455566666666666666555555556666666666666655544 2333343 55555443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-38 Score=289.29 Aligned_cols=380 Identities=25% Similarity=0.352 Sum_probs=308.7
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhcc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 90 (543)
..+||+++.+..+......++. .+..+.|++++|.+..+. ..|.++++|+++++.+|.++.||......
T Consensus 55 ~lldcs~~~lea~~~~~l~g~l----------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~s 124 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFL----------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHES 124 (873)
T ss_pred eeeecCccccccccccccCCcC----------ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccc
Confidence 4689999998887555544433 356788999999999874 67899999999999999999999877778
Q ss_pred CCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccCC-cccccCCCccEEEe
Q 009119 91 HMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167 (543)
Q Consensus 91 ~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l 167 (543)
.+|++|+|.+|.+.++. ..+..++.|+.||++.|.++.++ ..|.+-.++++|++++|.|+.+. ..|..+.+|-.|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 88999999999999774 46788999999999999999887 56777789999999999999774 45888899999999
Q ss_pred cCCcccccchhhhcccccccEEECCCCcCCcCc-hhccCCCcccEEEccCCccccCC-CCCcCCCCCcEEEcCCCCCCCC
Q 009119 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL 245 (543)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~l 245 (543)
++|.++.++...|..+++|+.|++..|.+..+. ..+..+++|+.|.+..|.+..+. ..|..+.++++|+++.|.+..+
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 999999999999999999999999999997763 46889999999999999999764 5688999999999999999977
Q ss_pred C-ccccCCCCCCEEeCCCCccccc--chhhhcceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCC
Q 009119 246 P-AELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321 (543)
Q Consensus 246 ~-~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (543)
. .++.+++.|+.|+++.|.|..+ ..+.+..+|+.|+++.|+++.++. .+..+..|++|+++.|.++.+....|
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af--- 361 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF--- 361 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH---
Confidence 4 4889999999999999999854 444555668888888888888654 46677777888887777655543322
Q ss_pred cHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCcc----CCh
Q 009119 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE----LPP 397 (543)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----l~~ 397 (543)
..+++|++||+.+|.+.+ -..
T Consensus 362 -------------------------------------------------------~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 362 -------------------------------------------------------VGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred -------------------------------------------------------HHhhhhhhhcCcCCeEEEEEecchh
Confidence 224567777777776654 222
Q ss_pred hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 398 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
.|..++.|+.|.+.+|++..+.-..|.++++|++|+|.+|.|-++..++|..+ .|++|.++.
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 46667777777887777777777777777778888877777777777777777 777776654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-38 Score=305.54 Aligned_cols=478 Identities=27% Similarity=0.334 Sum_probs=369.1
Q ss_pred eeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhccC
Q 009119 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (543)
Q Consensus 13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 91 (543)
.+|.+..+++-||.+++.+ ..+..|+++.|.+-..| +.+.+..+|+.|++++|.+..+|..+..+.
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~ 68 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS 68 (1081)
T ss_pred CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence 4688888899999988764 44889999999887765 556667779999999999999999999999
Q ss_pred CCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC-
Q 009119 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN- 170 (543)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~- 170 (543)
+|+.|+++.|.+..+|.+..+..+|+++++.+|....+|..+..+.+|++|+++.|.+..+|..+..+..++.+..++|
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence 9999999999999999889999999999999999999999999999999999999999999988888888999988888
Q ss_pred cccccchhhhcccccccEEECCCCcC-CcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccc
Q 009119 171 KLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (543)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l 249 (543)
.+..... . ..+.+++..+.+ ..++.....+.. .+++++|.+.. .....+.+|+.+....|.+..+.
T Consensus 149 ~~~~lg~-----~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~--- 215 (1081)
T KOG0618|consen 149 KIQRLGQ-----T-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELE--- 215 (1081)
T ss_pred hhhhhcc-----c-cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccceEE---
Confidence 2222222 1 266677777666 344444444444 58998888772 34567788888888888777442
Q ss_pred cCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHH
Q 009119 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (543)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (543)
..-++++.|+...|.++.......+.++++++++.+.+..+|.+++.+.+|+.+++..|.+..++..++.......+...
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 23478889999999888777666677799999999999999988899999999999999887666555443322222211
Q ss_pred hccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhcc--CCccEEEcCCCcCccCChh-hccCCCCc
Q 009119 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE-LSSCASLQ 406 (543)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~l~~~-~~~~~~L~ 406 (543)
...+.... .......++++|++..+.+..+|..+... ..++.++.+.+.+...|.. =...+.|+
T Consensus 296 ~nel~yip-------------~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 296 YNELEYIP-------------PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhhhCC-------------CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 11111110 01111246677777777777666644332 2356666666666665532 12345689
Q ss_pred eeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCc
Q 009119 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486 (543)
Q Consensus 407 ~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 486 (543)
.|.+.+|.+++.....+.++++|+.|+|++|++..+++..+.+++.|++|++|||.+..+. .....++.|++|...+|+
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCc
Confidence 9999999999988888999999999999999999999999999999999999999998764 567889999999999999
Q ss_pred cccCchhhhccCCCcEEeCCCCcccc--ccccccCCCCCCeEeCCCCc
Q 009119 487 LREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNN 532 (543)
Q Consensus 487 l~~l~~~~~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~ 532 (543)
+..+| .+..+++|+.+|++.|.++. +|+.... ++|+.||++||.
T Consensus 442 l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 442 LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 99999 77888999999999999984 3554444 899999999996
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=286.58 Aligned_cols=461 Identities=26% Similarity=0.348 Sum_probs=351.6
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhcc
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 90 (543)
+..|+++.|.+-+.|.+..++ +.+|+.|+++.+.+..+|..+..+.+|+.|+++.|.+...|....++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 677888888888888666665 55688888888888888888888888888888888888888888888
Q ss_pred CCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCC-cCccC-----------------
Q 009119 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITSL----------------- 152 (543)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~i----------------- 152 (543)
.+|++++|.+|.+..+|..+..+.+|+.|++++|.+..+|..+..+..++.+..++| .+..+
T Consensus 91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG 170 (1081)
T ss_pred hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence 888888888888888888888888888888888888888877777777777777766 11112
Q ss_pred --CcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCC
Q 009119 153 --PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (543)
Q Consensus 153 --~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (543)
+.....+.+ .+++.+|.+...+ +..+..|+.+....|++..+. ...++++.|+.+.|.+..+. ......
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~-~~p~p~ 241 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLD-VHPVPL 241 (1081)
T ss_pred chhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeec-cccccc
Confidence 122222222 3677777665222 556666777777776665443 23467888888888777432 223456
Q ss_pred CCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcce-ecEEEccCCCCCCCChhhcCCCCCceeecCCCC
Q 009119 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (543)
Q Consensus 231 ~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~ 309 (543)
+++.++++.+.+..+|.|+..+.+|+.++...|++..++...+... |+.+++..|.+..+|+..+..+.|++|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 8999999999999999999999999999999999988887776654 999999999999999999999999999999999
Q ss_pred cCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhh-hccCCccEEEcC
Q 009119 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLS 388 (543)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~ 388 (543)
+..++...+... ...+..+..+.+.+..++..- ...+.|+.|.+.
T Consensus 322 L~~lp~~~l~v~----------------------------------~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 322 LPSLPDNFLAVL----------------------------------NASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred ccccchHHHhhh----------------------------------hHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 988775332211 122334444444444444222 225678899999
Q ss_pred CCcCcc--CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCC
Q 009119 389 RNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466 (543)
Q Consensus 389 ~~~l~~--l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 466 (543)
+|.+++ +| .+.++++|+.|++++|++..++...+.++..|++|+|+||+++.++ .....+++|++|...+|++...
T Consensus 368 nN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred cCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeec
Confidence 999988 44 5788899999999999999999999999999999999999999888 4488899999999999988664
Q ss_pred CCCCCCCCCcCceeecCCCccc--cCchhhhccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCC
Q 009119 467 ENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDN 531 (543)
Q Consensus 467 ~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~ 531 (543)
- .+..++.|+.++++.|+++ .+++.... ++|++||++||....+ -+.|..+..+...++.-+
T Consensus 446 P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 446 P--ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred h--hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 2 5788999999999999988 44544443 8999999999975544 345666666666666655
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=4.3e-35 Score=273.20 Aligned_cols=366 Identities=25% Similarity=0.348 Sum_probs=285.6
Q ss_pred cCCccEEecCCCCcc--cccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEE
Q 009119 113 ATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190 (543)
Q Consensus 113 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 190 (543)
++-.+-+++++|.++ .+|.....+.+++.|.+....+..+|+.++.+.+|++|.++.|.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~----------------- 68 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI----------------- 68 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----------------
Confidence 344455566666655 4555555555555555555555555555555555555555555444
Q ss_pred CCCCcCCcCchhccCCCcccEEEccCCccc--cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccccc
Q 009119 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (543)
Q Consensus 191 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~ 268 (543)
.+-..++.++.|+.+.++.|++. ++|..+..+..|+.|++++|.++.+|..+...+++-+|++++|+|..+
T Consensus 69 -------~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 69 -------SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI 141 (1255)
T ss_pred -------hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC
Confidence 44445556666667777666555 667777777777777777777777777788888888888888888888
Q ss_pred chhhhcce--ecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchh
Q 009119 269 CVEACQLR--LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346 (543)
Q Consensus 269 ~~~~~~~~--L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (543)
|...+..- |-.||+++|++..+|+-...+.+|++|.+++|++..+....+..
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-------------------------- 195 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-------------------------- 195 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc--------------------------
Confidence 77766543 78888888888888888889999999999999875433222111
Q ss_pred hHHHhhhhcccccceeeeCCCCCC--CCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhh
Q 009119 347 DLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424 (543)
Q Consensus 347 ~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 424 (543)
..++.++.+++.+-+ .+|..+..+.+|..+|++.|++..+|+++..+++|+.|++++|+|+++.... +
T Consensus 196 ---------mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~ 265 (1255)
T KOG0444|consen 196 ---------MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-G 265 (1255)
T ss_pred ---------chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-H
Confidence 135667777766444 7899999999999999999999999999999999999999999999876654 6
Q ss_pred CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCC-CCCCCCCCCcCceeecCCCccccCchhhhccCCCcEE
Q 009119 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP-ENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503 (543)
Q Consensus 425 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 503 (543)
.-.+|+.|+++.|+++.+++. +.++++|+.|.+.+|.++.. ++..++.+.+|+.+..++|.+.-.|+++..|..|+.|
T Consensus 266 ~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred HHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence 678999999999999988865 88999999999999998754 5677899999999999999999999999999999999
Q ss_pred eCCCCccccccccccCCCCCCeEeCCCCcCCcCCCC
Q 009119 504 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539 (543)
Q Consensus 504 ~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 539 (543)
.|+.|++..+|++++-++-|+.||+..|+=-..||.
T Consensus 345 ~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 345 KLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 999999999999999999999999999975555543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.2e-34 Score=265.11 Aligned_cols=360 Identities=29% Similarity=0.428 Sum_probs=277.2
Q ss_pred HhhcCeeecCCCccc--ccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch
Q 009119 8 ARTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85 (543)
Q Consensus 8 ~~~~~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~ 85 (543)
.+.++-+|+++|.+. .+|.++-+ +++++-|.|...++.++|+-++.+.+|++|.+++|++.++-.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG 72 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG 72 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh
Confidence 345677888888877 78877765 678888888888888888888888888888888888887777
Q ss_pred hhhccCCCCEEEcCCCCCC--CCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcc-cccCCCc
Q 009119 86 AIGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKM 162 (543)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L 162 (543)
.++.++.|+.+.+..|++. .+|..+..+..|+.|+++.|+++..|..+..-+++-.|++++|.|..||.. +.++..|
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 7888888888888888877 678888888888888888888888888888888888888888888888765 5567788
Q ss_pred cEEEecCCcccccchhhhcccccccEEECCCCcCCcCc-hhccCCCcccEEEccCCccc--cCCCCCcCCCCCcEEEcCC
Q 009119 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGN 239 (543)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~ 239 (543)
-.|+++.|++..++.. ...+.+|++|++++|++..+. .++..+.+|+.|.+++.+-+ .+|..+..+.+|..++++.
T Consensus 153 LfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 8888888888877776 777788888888888875432 24456777888888887544 7788888888888889988
Q ss_pred CCCCCCCccccCCCCCCEEeCCCCcccccchhhhc-ceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCccccccc
Q 009119 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (543)
Q Consensus 240 ~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 318 (543)
|.+..+|+.+.++++|+.|++++|.++.+...... .++++|+++.|+++.+|.++.++++|+.|.+..|++.
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~------- 304 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT------- 304 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc-------
Confidence 88888888888888999999999888876655433 3488888888888888888888888888888777652
Q ss_pred CCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChh
Q 009119 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398 (543)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 398 (543)
+..+|+.++.+..|+++...+|.+.-+|+.
T Consensus 305 --------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 305 --------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred --------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchh
Confidence 235556666666666666666666666666
Q ss_pred hccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCC
Q 009119 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (543)
Q Consensus 399 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l 439 (543)
+..|+.|+.|.++.|.+..++..+ --++.|+.|++..|+-
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaI-HlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAI-HLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhh-hhcCCcceeeccCCcC
Confidence 666666666666666655554432 4456666666666653
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5.7e-22 Score=215.74 Aligned_cols=168 Identities=24% Similarity=0.287 Sum_probs=93.7
Q ss_pred ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccC--------ChhhccCCCCceeecccCcCCCCCHHHhhCCCCC
Q 009119 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL--------PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (543)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--------~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L 429 (543)
+++.+++.++.+..+|..+ .+++|++|.+.++....+ +.....+++|+.|++++|......+..+.++++|
T Consensus 726 nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 726 NISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred CcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 3444555555444444332 344555555554322111 1112234566777777664443334445667777
Q ss_pred CEEEcCCCC-CcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCC
Q 009119 430 SCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508 (543)
Q Consensus 430 ~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 508 (543)
+.|++++|. +..++.. . .+++|+.|++++|......+ ...++|++|++++|.++.+|..+..+++|+.|++++|
T Consensus 805 ~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 805 EHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP---DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc---ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence 777776654 3334432 2 56677777777654322111 1235677777777777777777777777777777775
Q ss_pred c-cccccccccCCCCCCeEeCCCC
Q 009119 509 S-LQSIPEGFKNLTSLTELDLSDN 531 (543)
Q Consensus 509 ~-l~~l~~~l~~~~~L~~L~l~~~ 531 (543)
. ++.+|..+..+++|+.+++++|
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCC
Confidence 3 6666666666777777777776
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-25 Score=197.34 Aligned_cols=410 Identities=21% Similarity=0.265 Sum_probs=250.3
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~ 89 (543)
..++|++.+++++|.++. +.-..++|..|+|+.|| .+|+.+++|+.|||++|.|..| |++|..
T Consensus 49 ~~VdCr~~GL~eVP~~LP---------------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP---------------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred ceEEccCCCcccCcccCC---------------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 368999999999999995 45889999999999998 6899999999999999999977 779999
Q ss_pred cCCCCEEEcCC-CCCCCCCh-hhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccCCc-ccccCCCccEE
Q 009119 90 LHMLKSLDVSF-NSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (543)
Q Consensus 90 ~~~L~~L~l~~-~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L 165 (543)
++.|..|.+.+ |+|+.+|. .|+++..++-|.+.-|++.-++ ..+..++++..|.+.+|.+..++. .|..+..++.+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 99998888776 88999986 5889999999999999888654 678889999999999999998876 67888888888
Q ss_pred EecCCccc------ccchh------hhcccccccEEECCCCcCCcCchh-c-cCCCcccEEEccCC-ccccCC-CCCcCC
Q 009119 166 DVEGNKLT------VLSNN------LIASWTMLTELIASKNLLNGMPET-I-GSLSRLIRLDLHQN-RILSIP-SSISGC 229 (543)
Q Consensus 166 ~l~~~~i~------~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~-l-~~~~~L~~L~l~~~-~~~~~~-~~~~~~ 229 (543)
.+..|.+. +.... .+++........+....+..++.. + ..+..+.+=-.+.+ ....-| ..|..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 87766522 11110 011111111111111111111110 0 00011110011111 111222 236677
Q ss_pred CCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhcce--ecEEEccCCCCCC-CChhhcCCCCCceeec
Q 009119 230 CSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG-LPPEIGKMTTLRKLLL 305 (543)
Q Consensus 230 ~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l 305 (543)
++|++|++++|.++.+ ..+|.+...+++|.+..|++..+....+..- |++|++.+|+|+. .|.+|.....|.+|.+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 7778888888777765 3467777778888888887777666665533 7778888887777 3555777777888888
Q ss_pred CCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCC----hhh-----
Q 009119 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP----SEI----- 376 (543)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~----~~~----- 376 (543)
-.|++-.- ......-.+++..- ..+... ...+..++.+.+++..+.... ++.
T Consensus 354 ~~Np~~Cn------C~l~wl~~Wlr~~~-~~~~~~------------Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s 414 (498)
T KOG4237|consen 354 LSNPFNCN------CRLAWLGEWLRKKS-VVGNPR------------CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTS 414 (498)
T ss_pred ccCcccCc------cchHHHHHHHhhCC-CCCCCC------------CCCCchhccccchhccccccccCCccccCCCCC
Confidence 77765210 01111122222211 000000 011223444444444333211 100
Q ss_pred ----hccCCccE-EEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119 377 ----WEAGEITK-LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (543)
Q Consensus 377 ----~~~~~L~~-L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 451 (543)
..++.+.. ...++..++.+|..+. ...+.+++.+|.++.++.+ .+.+| .+++++|++..+....|.++.
T Consensus 415 ~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~t 488 (498)
T KOG4237|consen 415 SPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMT 488 (498)
T ss_pred CCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchh
Confidence 01122221 2223333444443221 2456667777777766665 34555 677777777666666667777
Q ss_pred CccEEEccCC
Q 009119 452 MLQILDLSYN 461 (543)
Q Consensus 452 ~L~~L~l~~n 461 (543)
+|.+|.+++|
T Consensus 489 ql~tlilsyn 498 (498)
T KOG4237|consen 489 QLSTLILSYN 498 (498)
T ss_pred hhheeEEecC
Confidence 7777666654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.8e-21 Score=211.82 Aligned_cols=322 Identities=24% Similarity=0.285 Sum_probs=188.5
Q ss_pred ccCccEEEcCccccc-------cchHHhcCCC-CCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCC
Q 009119 44 AVDLQKLILAHNNIE-------KLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~-------~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 115 (543)
+++|+.|.+..+... .+|..|..++ +|+.|.+.++.+..+|..| ...+|+.|++.++.+..++..+..+++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence 555666666544211 3455555543 4777777777666666655 356677777777766666666666777
Q ss_pred ccEEecCCCC-cccccccccCCCCCCEEEccCCc-CccCCcccccCCCccEEEecCC-cccccchhhhcccccccEEECC
Q 009119 116 LVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIAS 192 (543)
Q Consensus 116 L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~i~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~ 192 (543)
|+.++++++. +..+| .+..+++|++|++++|. +..+|..+..+++|+.|++++| .+..++.. ..+++|+.|+++
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Ls 712 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLS 712 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCC
Confidence 7777776654 34554 35566677777776653 3466666667777777777665 34444432 145667777777
Q ss_pred CCcC-CcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc--------cccCCCCCCEEeCCCC
Q 009119 193 KNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA--------ELGKLSKLGTLDLHSN 263 (543)
Q Consensus 193 ~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~--------~l~~~~~L~~L~l~~n 263 (543)
+|.. ..+|. ...+|+.|+++++.+..+|..+ .+++|++|.+.++....++. .....++|+.|++++|
T Consensus 713 gc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 713 GCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCcccccc---ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 6643 33332 1345667777777766666544 45666666665543222211 1122356666666665
Q ss_pred cc-cccchhhhc-ceecEEEccCC-CCCCCChhhcCCCCCceeecCCCCc-CcccccccCCCcHHHHHHHhccCCCCccc
Q 009119 264 QL-KEYCVEACQ-LRLSVLDLSNN-SLSGLPPEIGKMTTLRKLLLTGNPL-RTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (543)
Q Consensus 264 ~l-~~~~~~~~~-~~L~~L~l~~~-~i~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (543)
.. ..++..... .+|+.|++++| .+..+|..+ .+++|+.|++++|.. ..++
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p------------------------- 842 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP------------------------- 842 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-------------------------
Confidence 32 233333222 23666666665 334455443 566777777776532 1110
Q ss_pred ccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCc-CccCChhhccCCCCceeecccC
Q 009119 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN 413 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~ 413 (543)
....+++.|+++++.+..+|..+..+++|+.|++++|. ++.+|.....+++|+.+++++|
T Consensus 843 --------------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 843 --------------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred --------------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 01245677777777777777777777778888887753 5666666667777777777776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=4.2e-22 Score=200.90 Aligned_cols=258 Identities=30% Similarity=0.374 Sum_probs=217.9
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhcc
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 90 (543)
-..||++.++++++|..+. ++|+.|++++|.++.+|. ..++|++|++++|.++.+|.. .
T Consensus 203 ~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p 261 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---P 261 (788)
T ss_pred CcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---c
Confidence 4579999999999998874 359999999999999875 358999999999999988753 4
Q ss_pred CCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC
Q 009119 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (543)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~ 170 (543)
++|+.|++++|.+..+|.. .++|+.|++++|+++.+|.. .++|+.|++++|.+..+|... .+|+.|++++|
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N 332 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN 332 (788)
T ss_pred cccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccC
Confidence 6899999999999888764 36788999999999988853 468999999999999887532 46888999999
Q ss_pred cccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCcccc
Q 009119 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (543)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~ 250 (543)
.+..++. ...+|++|++++|.+..+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.++.+|..
T Consensus 333 ~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l-- 400 (788)
T PRK15387 333 QLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL-- 400 (788)
T ss_pred ccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--
Confidence 9887663 125799999999999988853 35788999999999988764 35799999999999988764
Q ss_pred CCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcc
Q 009119 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (543)
Q Consensus 251 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~ 313 (543)
.++|+.|++++|.+..++.. ...|+.|++++|.++.+|..+.++++++.+++++|++...
T Consensus 401 -~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 401 -PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred -ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 36899999999999987753 3468999999999999999999999999999999998643
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=1.4e-21 Score=197.28 Aligned_cols=259 Identities=24% Similarity=0.260 Sum_probs=188.9
Q ss_pred ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (543)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 263 (543)
..-..|+++++.++.+|..+. ++|+.|++.+|.++.+|.. .++|++|++++|.++.+|.. .++|++|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 346678999998888887664 4789999999988888753 57899999999988888753 468888999999
Q ss_pred cccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccccc
Q 009119 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343 (543)
Q Consensus 264 ~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (543)
.+..++. ....|+.|++++|.++.+|.. .++|+.|++++|.+..++.
T Consensus 273 ~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~---------------------------- 319 (788)
T PRK15387 273 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---------------------------- 319 (788)
T ss_pred chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC----------------------------
Confidence 8887665 234588889999888887653 3678888888888765542
Q ss_pred chhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHh
Q 009119 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL 423 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l 423 (543)
.+..++.|++.+|.++.+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+..++.
T Consensus 320 -----------lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~--- 379 (788)
T PRK15387 320 -----------LPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA--- 379 (788)
T ss_pred -----------CcccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCcc---
Confidence 113456777777777776642 24678888888888877742 3567778888887776553
Q ss_pred hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEE
Q 009119 424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503 (543)
Q Consensus 424 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 503 (543)
...+|+.|++++|+++.++.. .++|+.|++++|.+..+ +. ...+|+.|++++|+++.+|..+..+++|+.|
T Consensus 380 -l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssI-P~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 380 -LPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTV 450 (788)
T ss_pred -cccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCC-Cc---chhhhhhhhhccCcccccChHHhhccCCCeE
Confidence 235678888888887766532 35778888888877653 21 2346777888888888888777777888888
Q ss_pred eCCCCcccc
Q 009119 504 DLSQNSLQS 512 (543)
Q Consensus 504 ~l~~~~l~~ 512 (543)
++++|+++.
T Consensus 451 dLs~N~Ls~ 459 (788)
T PRK15387 451 NLEGNPLSE 459 (788)
T ss_pred ECCCCCCCc
Confidence 888887763
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-24 Score=190.96 Aligned_cols=388 Identities=23% Similarity=0.302 Sum_probs=261.5
Q ss_pred hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCC-CcCcccch-h
Q 009119 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSH-NKLSELPA-A 86 (543)
Q Consensus 10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~-~~l~~~~~-~ 86 (543)
..+++++..|+|+.||...|+. +++||.|+||.|.|+.| |.+|++++.+..|.+.+ |+|+++|. +
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~------------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKT------------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccCCcccCChhhccc------------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 4468999999999999999887 56699999999999988 68999999998888777 89999987 8
Q ss_pred hhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCc---cC---------
Q 009119 87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SL--------- 152 (543)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~i--------- 152 (543)
|..+..|+.|.+.-|.+.-+ .+++..++++..|.+.+|.+..++. .+..+..++++.+..+.+- .+
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 99999999999998888844 5678899999999999999998885 7888889999988887643 11
Q ss_pred -CcccccCCCccEEEecCCcccccchhhhccc-ccccE-EECCCCcCCcCch-hccCCCcccEEEccCCccccCC-CCCc
Q 009119 153 -PEDLADCSKMSKLDVEGNKLTVLSNNLIASW-TMLTE-LIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSIS 227 (543)
Q Consensus 153 -~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-~~L~~-L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~-~~~~ 227 (543)
+..++......-..+.+.++..++...|... ..+.+ +.-..+.....|. .+..+++|+.|++++|+++.+. .+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 1222222233333344444555544433322 11111 1112222233333 4778888888888888888664 5678
Q ss_pred CCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcce--ecEEEccCCCCCC------CChhhcCCC
Q 009119 228 GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG------LPPEIGKMT 298 (543)
Q Consensus 228 ~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~l~~~~i~~------~~~~l~~~~ 298 (543)
+...+++|++..|++..+. ..|.++..|++|++.+|+|+.+....|..- |.+|++-.|.+.. +..++.+-.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 8888888888888888553 367788888888888888888877777654 8888887764433 223332211
Q ss_pred -----------CCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcc-cccccchhhHHHhhhhcccccceeeeCC
Q 009119 299 -----------TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-SEASTTKEDLITMATRLSVTSKELSLEG 366 (543)
Q Consensus 299 -----------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 366 (543)
.++.+.++...+..+.- ..+. ...... ......+ .+--++...++
T Consensus 376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c-----~~~e--------e~~~~~s~~cP~~c----------~c~~tVvRcSn 432 (498)
T KOG4237|consen 376 VVGNPRCQSPGFVRQIPISDVAFGDFRC-----GGPE--------ELGCLTSSPCPPPC----------TCLDTVVRCSN 432 (498)
T ss_pred CCCCCCCCCCchhccccchhcccccccc-----CCcc--------ccCCCCCCCCCCCc----------chhhhhHhhcc
Confidence 12233333322221110 0000 000000 0000000 01113344455
Q ss_pred CCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (543)
Q Consensus 367 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n 437 (543)
...+.+|..+ .....++.+++|.++.+|.. .+.++ .+++++|++.......|.++..|..|.|++|
T Consensus 433 k~lk~lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 5555554433 23457789999999999976 56778 9999999999998889999999999999876
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.4e-20 Score=191.30 Aligned_cols=245 Identities=27% Similarity=0.433 Sum_probs=137.1
Q ss_pred hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhc
Q 009119 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (543)
Q Consensus 10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 89 (543)
+.+.|++++.+++++|..+. +.++.|++++|.+..+|..+. ++|+.|++++|.+..+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~- 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP- 240 (754)
T ss_pred CceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-
Confidence 34567777777777776653 347777777777777765543 467777777777777765443
Q ss_pred cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecC
Q 009119 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (543)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~ 169 (543)
.+|+.|++++|.+..+|..+. .+|+.|++++|.+..+|..+. .+|++|++++|.++.+|..+. ++|+.|++++
T Consensus 241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence 357777777777776666543 467777777777776665443 466777777766666554332 3455555555
Q ss_pred CcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccc
Q 009119 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (543)
Q Consensus 170 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l 249 (543)
|.+..++... .++|++|++++|.+..+|..+. ++|+.|++++|.+..+|..+
T Consensus 314 N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l~-------------------------~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 314 NSLTALPETL---PPGLKTLEAGENALTSLPASLP-------------------------PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred CccccCCccc---cccceeccccCCccccCChhhc-------------------------CcccEEECCCCCCCcCChhh
Confidence 5555443211 1344555555555444443322 34444555554444444333
Q ss_pred cCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhc----CCCCCceeecCCCCc
Q 009119 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG----KMTTLRKLLLTGNPL 310 (543)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~----~~~~L~~L~l~~~~~ 310 (543)
.++|++|++++|.+..++... ...|+.|++++|++..+|..+. .++.+..+++.+|++
T Consensus 366 --p~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 366 --PPTITTLDVSRNALTNLPENL-PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --cCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 134555555555555444332 1235555555555555443322 234555566665554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.4e-19 Score=184.19 Aligned_cols=245 Identities=24% Similarity=0.333 Sum_probs=124.9
Q ss_pred ccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCC
Q 009119 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288 (543)
Q Consensus 209 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~ 288 (543)
...|+++++.+..+|..+ .+.++.|++++|.++.+|..+. ++|++|++++|.++.++... ...|+.|++++|.+.
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRIT 254 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-hccccEEECcCCccC
Confidence 445555555555555433 2345555555555555554332 35666666666555554322 224566666666665
Q ss_pred CCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCC
Q 009119 289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368 (543)
Q Consensus 289 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 368 (543)
.+|..+. .+|+.|++++|.+..++... +.+++.|++++|.
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--------------------------------------~~sL~~L~Ls~N~ 294 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENL--------------------------------------PEELRYLSVYDNS 294 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCcccccc--------------------------------------CCCCcEEECCCCc
Confidence 5555443 35666666666554332110 1234444555544
Q ss_pred CCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccC
Q 009119 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448 (543)
Q Consensus 369 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 448 (543)
++.+|..+. ++|+.|++++|.++.+|..+ .++|+.|++++|.++.++... .++|+.|++++|+++.++.. +
T Consensus 295 Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~-l- 365 (754)
T PRK15370 295 IRTLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPET-L- 365 (754)
T ss_pred cccCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccccCChhh---cCcccEEECCCCCCCcCChh-h-
Confidence 444443221 34566666666666655432 245666666666666554321 25666666666666554432 2
Q ss_pred CCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhc----cCCCcEEeCCCCccc
Q 009119 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR----LQQLRILDLSQNSLQ 511 (543)
Q Consensus 449 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~----~~~L~~L~l~~~~l~ 511 (543)
.++|++|++++|.+..+.. .+ .++|+.|++++|+++.+|..+.. ++.+..|++.+|.+.
T Consensus 366 -p~~L~~LdLs~N~Lt~LP~-~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 -PPTITTLDVSRNALTNLPE-NL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -cCCcCEEECCCCcCCCCCH-hH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2456666666665543311 11 12455566666666555443322 355556666665554
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=4.5e-20 Score=144.93 Aligned_cols=166 Identities=35% Similarity=0.608 Sum_probs=149.2
Q ss_pred hhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCcc
Q 009119 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (543)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 454 (543)
.++.+..++.|.+++|.++.+|..+..+.+|+.|++++|++++.+.. ++.+++|+.|++.-|++...+. +|+.+|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr-gfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR-GFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc-ccCCCchhh
Confidence 34556788899999999999998899999999999999999998876 4889999999999998876664 499999999
Q ss_pred EEEccCCcCCC-CCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcC
Q 009119 455 ILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 533 (543)
Q Consensus 455 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~ 533 (543)
.||+.+|.+.. ..+..|..++.|+-|++++|.+..+|..+..+++|+.|.+.+|.+-.+|..++.++.|++|+|.||++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 99999998864 34666888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCcCC
Q 009119 534 SALPPELVS 542 (543)
Q Consensus 534 ~~~~~~~~~ 542 (543)
+.+|||+..
T Consensus 186 ~vlppel~~ 194 (264)
T KOG0617|consen 186 TVLPPELAN 194 (264)
T ss_pred eecChhhhh
Confidence 999999753
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2e-19 Score=141.38 Aligned_cols=156 Identities=30% Similarity=0.455 Sum_probs=83.5
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
++.+..|.+|+|.++.+|..++.+.+|+.|++.+|++..+|..++.+++|++|+++-|++..+|..|+.++.|+.|++.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCcc--cccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc
Q 009119 124 NQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (543)
Q Consensus 124 ~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (543)
|.+. .+|..|..+..|+.|++++|.++.+|...+++++|+.|.+.+|.+-..+.. ++.+..|++|.+.+|.++.+|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeecC
Confidence 5555 445555555555555555555555555555555555555555444333322 333344444444444443333
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=3.8e-17 Score=155.28 Aligned_cols=177 Identities=23% Similarity=0.270 Sum_probs=126.1
Q ss_pred cccceeeeCCCCCCC-----CChhhhcc-CCccEEEcCCCcCcc-----CChhhccCCCCceeecccCcCCCCCH----H
Q 009119 357 VTSKELSLEGMNLSA-----IPSEIWEA-GEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPD----A 421 (543)
Q Consensus 357 ~~l~~l~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~i~~~~~----~ 421 (543)
+.++.+++++|.+.. +...+..+ ++|+++++++|.++. ++..+..+++|++|++++|.+++... .
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 346777777766552 22334455 788999999998873 44556777889999999998885322 2
Q ss_pred HhhCCCCCCEEEcCCCCCcccCC----CccCCCCCccEEEccCCcCCCCCCCCC-----CCCCcCceeecCCCccc----
Q 009119 422 ILTSLSSLSCLKLDNNPLRQVPS----DGFKDIPMLQILDLSYNIASLPENPPF-----SSLPHLQELYLRRMQLR---- 488 (543)
Q Consensus 422 ~l~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~l~---- 488 (543)
.+..+++|++|++++|.+.+... ..+..+++|++|++++|.+.+.....+ ...+.|++|++++|.++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 34566799999999998875332 235678899999999998775322111 13578999999999886
Q ss_pred -cCchhhhccCCCcEEeCCCCcccc-----ccccccCC-CCCCeEeCCCCcC
Q 009119 489 -EAPTDILRLQQLRILDLSQNSLQS-----IPEGFKNL-TSLTELDLSDNNI 533 (543)
Q Consensus 489 -~l~~~~~~~~~L~~L~l~~~~l~~-----l~~~l~~~-~~L~~L~l~~~~~ 533 (543)
.+...+..+++|+.+++++|.+.. +.+.+... +.|+++++.++++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 344556667899999999999873 23445555 7999999998875
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=3e-16 Score=149.09 Aligned_cols=245 Identities=27% Similarity=0.327 Sum_probs=135.3
Q ss_pred EEEcCccccc--cchHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCCC-------CChhhcccC
Q 009119 49 KLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-------IPDEIGSAT 114 (543)
Q Consensus 49 ~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~-------l~~~~~~~~ 114 (543)
.|+|.++.+. .....+..+.+|+.|+++++.+. .++..+...+.|++++++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665 34456777788999999998874 355566777888999988876652 223456677
Q ss_pred CccEEecCCCCcc-cccccccCC---CCCCEEEccCCcCcc-----CCcccccC-CCccEEEecCCcccccc----hhhh
Q 009119 115 ALVKFDCSSNQLK-ELPSSLGRC---LNLSDFKASNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLS----NNLI 180 (543)
Q Consensus 115 ~L~~L~l~~~~~~-~~~~~~~~~---~~L~~L~l~~~~~~~-----i~~~~~~~-~~L~~L~l~~~~i~~~~----~~~~ 180 (543)
+|+.|++++|.+. ..+..+..+ ++|++|++++|.+.. +...+..+ ++|+.|++++|.+.... ...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888887776 222222222 347777777776652 22334444 66666666666655211 1123
Q ss_pred cccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC-----CCCccccCCCCC
Q 009119 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKL 255 (543)
Q Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-----~l~~~l~~~~~L 255 (543)
..+..|++|++++|.+..... ..++..+..+++|++|++++|.+. .++..+..+++|
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGI------------------RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred HhCCCcCEEECcCCCCchHHH------------------HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 333445555555544431000 011112223344555555554443 122334455666
Q ss_pred CEEeCCCCcccccchhh----h---cceecEEEccCCCCCC-----CChhhcCCCCCceeecCCCCcC
Q 009119 256 GTLDLHSNQLKEYCVEA----C---QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLR 311 (543)
Q Consensus 256 ~~L~l~~n~l~~~~~~~----~---~~~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~~~ 311 (543)
++|++++|.+++..... . ...|+++++++|.+++ +...+..+++|+.+++++|.+.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 66666666655321111 1 1346666666666652 3334556677777777777764
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.44 E-value=6.3e-15 Score=137.78 Aligned_cols=209 Identities=32% Similarity=0.436 Sum_probs=140.2
Q ss_pred hHHHHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCc
Q 009119 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS 81 (543)
Q Consensus 2 ~~~~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~ 81 (543)
++++..+.+-.++.|++..+.++|...+. + ....-...+++.|.+.++|..+..|..|+.+.+.+|.+.
T Consensus 43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~--~---------~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r 111 (722)
T KOG0532|consen 43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS--Y---------DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR 111 (722)
T ss_pred hHHHHHHhhhcccccccchhhcCCCcccc--c---------cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence 56778888888899999999988887765 2 245566778888888888777777777777778888777
Q ss_pred ccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCC
Q 009119 82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161 (543)
Q Consensus 82 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~ 161 (543)
.+|.++.++..|++++|+.|.+..+|..+..++ |+.|-+++|+++.+|..++....|.+|+.+.|.+..+|..+..+.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 777788888888888888777777776665443 6777777777777776666666666666666666666555555555
Q ss_pred ccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCC
Q 009119 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241 (543)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 241 (543)
|+.|.+.+| .+..+|+.+.. -.|..||++.|++..+|-.|..++.|++|.+.+|.
T Consensus 191 lr~l~vrRn------------------------~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 191 LRDLNVRRN------------------------HLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHhhh------------------------hhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 555555544 44444444442 22555555555555555555555555555555555
Q ss_pred CCCCCc
Q 009119 242 LSALPA 247 (543)
Q Consensus 242 l~~l~~ 247 (543)
+..-|.
T Consensus 246 LqSPPA 251 (722)
T KOG0532|consen 246 LQSPPA 251 (722)
T ss_pred CCCChH
Confidence 554444
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=7.1e-14 Score=123.27 Aligned_cols=177 Identities=20% Similarity=0.181 Sum_probs=112.5
Q ss_pred ccCccEEEcCccccc-----cchHHhcCCCCCCEEEcCCCcCc----ccc-------hhhhccCCCCEEEcCCCCCC-CC
Q 009119 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI 106 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~----~~~-------~~~~~~~~L~~L~l~~~~~~-~l 106 (543)
...+++++|+||.+. .+...+++.+.|+..++++--.. .+| +++-.+++|++|+||.|.+. ..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 456888888888776 45567888888888888764211 233 34556778888888888776 22
Q ss_pred C----hhhcccCCccEEecCCCCccccc--------------ccccCCCCCCEEEccCCcCcc-----CCcccccCCCcc
Q 009119 107 P----DEIGSATALVKFDCSSNQLKELP--------------SSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMS 163 (543)
Q Consensus 107 ~----~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~-----i~~~~~~~~~L~ 163 (543)
+ .-+.+++.|++|++.+|.+.... .-.+.-+.|+++.++.|++.+ +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 2 23556888888888888776211 123344577777777777663 334466667777
Q ss_pred EEEecCCcccc----cchhhhcccccccEEECCCCcCC-----cCchhccCCCcccEEEccCCccc
Q 009119 164 KLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRIL 220 (543)
Q Consensus 164 ~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~ 220 (543)
.+.+..|.|.. +....+..+++|+.|++.+|.++ .+...+..+++|+.+++++|.+.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 77777776652 22344556666666666666653 23445556666666666666554
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.37 E-value=1.9e-13 Score=117.90 Aligned_cols=131 Identities=27% Similarity=0.354 Sum_probs=104.2
Q ss_pred CCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeec
Q 009119 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (543)
Q Consensus 403 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 482 (543)
..|+.+|+++|.|+.+...+ .-.|.++.|++++|++..++. ++.+++|+.||+++|.++..... =..+.+++.|.+
T Consensus 284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh-HhhhcCEeeeeh
Confidence 45788888888888877654 667888888888888887764 77788889999998877665332 246788899999
Q ss_pred CCCccccCchhhhccCCCcEEeCCCCcccccc--ccccCCCCCCeEeCCCCcCCcCCC
Q 009119 483 RRMQLREAPTDILRLQQLRILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP 538 (543)
Q Consensus 483 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~~~ 538 (543)
++|.+..+ .++..+.+|..||+++|+++.+. ..++++|-|+.+.+.+|++.-+++
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99988876 46777889999999999988764 458899999999999999887654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=1.8e-14 Score=134.82 Aligned_cols=187 Identities=30% Similarity=0.431 Sum_probs=136.8
Q ss_pred EEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCcccc
Q 009119 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 221 (543)
Q Consensus 142 L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 221 (543)
.+++.|++..+|..+..|..|+.+.++.|.+..+... +..+..|++++++.|++..+|..+..++ |+.|-+++|++..
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc
Confidence 3444444444444444444455555544444444433 4455555566666666666666666655 7777788888888
Q ss_pred CCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCc
Q 009119 222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301 (543)
Q Consensus 222 ~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~ 301 (543)
+|..+.....|..++.+.|.+..+|..+.++.+|+.|.+..|++..++......+|..||++.|++..+|..|.+|++|+
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQ 237 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhhe
Confidence 88777777888888888888888888888889999999999999988888888889999999999999999999999999
Q ss_pred eeecCCCCcCcccccccCCCcHHHHHHHh
Q 009119 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLR 330 (543)
Q Consensus 302 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (543)
+|.+..|++++-+..+...+..+-+.++.
T Consensus 238 ~l~LenNPLqSPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 238 VLQLENNPLQSPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred eeeeccCCCCCChHHHHhccceeeeeeec
Confidence 99999999998877766665555544443
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=1.6e-13 Score=121.02 Aligned_cols=132 Identities=21% Similarity=0.246 Sum_probs=79.2
Q ss_pred cCCccEEEcCCCcCccC-----ChhhccCCCCceeecccCcCCCC----CHHHhhCCCCCCEEEcCCCCCccc----CCC
Q 009119 379 AGEITKLDLSRNSIQEL-----PPELSSCASLQTLILSRNKIKDW----PDAILTSLSSLSCLKLDNNPLRQV----PSD 445 (543)
Q Consensus 379 ~~~L~~L~l~~~~l~~l-----~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~L~~n~l~~~----~~~ 445 (543)
.+.|+++...+|.+.+- ...+...+.|+.+.+..|.|... ....|..|++|+.|+|+.|-++.. .+.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 45667777777766552 23456666777777777766542 234456677777777777766532 223
Q ss_pred ccCCCCCccEEEccCCcCCCCCCCCC-----CCCCcCceeecCCCccc-----cCchhhhccCCCcEEeCCCCcc
Q 009119 446 GFKDIPMLQILDLSYNIASLPENPPF-----SSLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNSL 510 (543)
Q Consensus 446 ~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~l 510 (543)
.++.++.|+++++++|.+...+..++ ...|+|+.|.+.+|.++ .+...+...+.|+.|+|++|++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 35566677777777766655433322 23567777777777666 2233344466777777777766
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=4.8e-13 Score=110.89 Aligned_cols=124 Identities=32% Similarity=0.422 Sum_probs=41.3
Q ss_pred ccCCCCceeecccCcCCCCCHHHhh-CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCc
Q 009119 400 SSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478 (543)
Q Consensus 400 ~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 478 (543)
.++.++++|++.+|.|+.+.. ++ .+.+|+.|++++|.++.+. .+..+++|++|++++|.++.+.......+|+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 444566777777777766543 23 4567777777777777654 366677777777777777665322113467777
Q ss_pred eeecCCCccccCc--hhhhccCCCcEEeCCCCcccccc----ccccCCCCCCeEe
Q 009119 479 ELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIP----EGFKNLTSLTELD 527 (543)
Q Consensus 479 ~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~l~----~~l~~~~~L~~L~ 527 (543)
+|++++|+|..+. ..+..+++|+.|++.||.+..-+ ..+..+|+|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 7777777776442 34556777777777777766432 3356777777776
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=2.1e-12 Score=126.17 Aligned_cols=179 Identities=31% Similarity=0.451 Sum_probs=149.1
Q ss_pred ccCccEEEcCccccccchHHhcCCC-CCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (543)
.+.++.|++.++.+.+++....... +|+.|++++|.+..++..+..+++|+.|++++|++..++...+..+.|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3568999999999998887777774 899999999999888888889999999999999999888877788999999999
Q ss_pred CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (543)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (543)
+|++..+|........|+++.+++|.+...+..+..+.++..+.+..+.+..+.. .+..++.++++++++|.+..++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-hhccccccceecccccccccccc-
Confidence 9999988877667778999999998766666778888888888888887765422 27777889999999999988876
Q ss_pred ccCCCcccEEEccCCccccCCC
Q 009119 203 IGSLSRLIRLDLHQNRILSIPS 224 (543)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~~~~ 224 (543)
+....+++.++++++.+...+.
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccCccCEEeccCccccccch
Confidence 7788899999999987775543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.7e-12 Score=125.36 Aligned_cols=197 Identities=34% Similarity=0.473 Sum_probs=170.0
Q ss_pred EEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccC-CCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcc
Q 009119 49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELH-MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127 (543)
Q Consensus 49 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 127 (543)
.+++..+.+..-...+..++.++.+++.++.+..++....... +|+.|++++|.+..++..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5888888775444566677999999999999999988887775 999999999999999888999999999999999999
Q ss_pred cccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCC
Q 009119 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207 (543)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 207 (543)
++|......++|+.|+++++.+..+|........|+++.+++|.+..+... +....++..+.+..+++..++..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh-hhhcccccccccCCceeeeccchhcccc
Confidence 998777788999999999999999988777777899999999954333332 7778888888899999888788888999
Q ss_pred cccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc
Q 009119 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (543)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~ 247 (543)
.++.|++++|.+..++. +....+++.++++++.+...+.
T Consensus 256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 99999999999998877 8889999999999998875543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=2.4e-12 Score=106.77 Aligned_cols=121 Identities=26% Similarity=0.366 Sum_probs=41.4
Q ss_pred ccCccEEEcCccccccchHHhc-CCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhh-cccCCccEEec
Q 009119 44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC 121 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~l 121 (543)
+.++++|+|+++.|..+. .+. .+.+|+.|++++|.+..+. .+..+++|+.|++++|.++.+...+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 556788888888888774 344 5778888888888888773 5677788888888888888776554 35788888888
Q ss_pred CCCCccccc--ccccCCCCCCEEEccCCcCccCCc----ccccCCCccEEE
Q 009119 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLD 166 (543)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~----~~~~~~~L~~L~ 166 (543)
++|++.++. ..+..+++|++|++.+|++...+. .+..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 888777543 344556666666666666653321 134445555554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.9e-13 Score=120.92 Aligned_cols=203 Identities=21% Similarity=0.207 Sum_probs=114.9
Q ss_pred hcCCCCCCEEEcCCCcCcccc--hhhhccCCCCEEEcCCCCCCC---CChhhcccCCccEEecCCCCccccccc--ccCC
Q 009119 64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSS--LGRC 136 (543)
Q Consensus 64 ~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~ 136 (543)
=+++.+|+++.|.++.....+ .....|++++.|+|++|-+.. +.....++++|+.|+++.|.+...... -.-+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345555666666665554333 244556666666666654442 222344566666666666665522211 1234
Q ss_pred CCCCEEEccCCcCc--cCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc--hhccCCCcccEE
Q 009119 137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL 212 (543)
Q Consensus 137 ~~L~~L~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L 212 (543)
++|+.|.++.|.++ ++...+..+|+|+.|.+..|...-+......-+..|++|++++|.+...+ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 56666666666665 34344556677777777766433333333445566777777777776655 345667777777
Q ss_pred EccCCccccCC--CC-----CcCCCCCcEEEcCCCCCCCCC--ccccCCCCCCEEeCCCCccc
Q 009119 213 DLHQNRILSIP--SS-----ISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 213 ~l~~~~~~~~~--~~-----~~~~~~L~~l~l~~~~l~~l~--~~l~~~~~L~~L~l~~n~l~ 266 (543)
+++.+.+..+. .. ....++|+.|.+..|++..++ ..+..+++|+.+.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777776432 21 234566677777766665443 24555566666666666554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=1.9e-12 Score=111.89 Aligned_cols=225 Identities=25% Similarity=0.259 Sum_probs=147.0
Q ss_pred hhccCCCCEEEcCCCC--CC-------CCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccc
Q 009119 87 IGELHMLKSLDVSFNS--IM-------KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLA 157 (543)
Q Consensus 87 ~~~~~~L~~L~l~~~~--~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~ 157 (543)
+..+.+|++|..++.. +. .+|-.+.-..+|+.+.++.+.-..|......-+.|+++......+...+.-+.
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP 257 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence 3445667777666542 11 12333444556666666666555443333334566666665544433221110
Q ss_pred cCCCccEEEecCCccccc---chhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcE
Q 009119 158 DCSKMSKLDVEGNKLTVL---SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAE 234 (543)
Q Consensus 158 ~~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 234 (543)
...+. |.....-+.. .......+..|++++++.|.+..+.+.+.-.|.++.|+++.|.+..+. .+..+++|++
T Consensus 258 -e~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~ 333 (490)
T KOG1259|consen 258 -ETILA--DPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQL 333 (490)
T ss_pred -hhhhc--CccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceE
Confidence 01111 1111000000 000122345688888888888888888888889999999999888774 3778889999
Q ss_pred EEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCC--hhhcCCCCCceeecCCCCcCc
Q 009119 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRT 312 (543)
Q Consensus 235 l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~~~ 312 (543)
|++++|.+..+..|-.++-++++|.+.+|.+.++.-..-..+|..||+++|+|..+. ..+++++.|+++.+.+|++..
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999999888777777788899999999998887766666677899999999888853 458999999999999999876
Q ss_pred ccc
Q 009119 313 LRS 315 (543)
Q Consensus 313 ~~~ 315 (543)
+..
T Consensus 414 ~vd 416 (490)
T KOG1259|consen 414 SVD 416 (490)
T ss_pred cch
Confidence 654
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.7e-12 Score=116.74 Aligned_cols=181 Identities=21% Similarity=0.259 Sum_probs=86.8
Q ss_pred hcccccceeeeCCCCCC---CCChhhhccCCccEEEcCCCcCccCChh--hccCCCCceeecccCcCCCC-CHHHhhCCC
Q 009119 354 RLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDW-PDAILTSLS 427 (543)
Q Consensus 354 ~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~ 427 (543)
..++.++.++++.+-+. .+...+..+|+|+.|+++.|.+...-.. -..+++|++|.++.|.++.- ....+..+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 33455555555555333 2333344455555555555544331111 12344555555555555521 122334555
Q ss_pred CCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCC-CCCCCCCCcCceeecCCCccccC--chh-----hhccCC
Q 009119 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREA--PTD-----ILRLQQ 499 (543)
Q Consensus 428 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l--~~~-----~~~~~~ 499 (543)
+|+.|++.+|..-.+......-+..|++||+++|.+.+.. ....+.+|.|+.|+++.|.+.++ |.. ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 6666666555322222222334455666666665554432 22345556666666666665532 221 223456
Q ss_pred CcEEeCCCCcccccc--ccccCCCCCCeEeCCCCcCC
Q 009119 500 LRILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 500 L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~ 534 (543)
|++|+++.|++...+ ..+..+++|+.|.+..|.+.
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666666666654432 22455555666665555554
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.01 E-value=4.3e-11 Score=116.87 Aligned_cols=243 Identities=27% Similarity=0.355 Sum_probs=137.2
Q ss_pred CCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEcc
Q 009119 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (543)
Q Consensus 66 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 145 (543)
.+..++.+++..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.++.+ ..+..+..|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheec
Confidence 3444444445555544432334555556666666665555544355566666666666666555 244444556666666
Q ss_pred CCcCccCCcccccCCCccEEEecCCcccccch-hhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCC
Q 009119 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224 (543)
Q Consensus 146 ~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 224 (543)
+|.+..+. .+..++.|+.+++++|.+..+.. . ...+..++.+.+.+|.+..+. .+.....+..+++.++.+..+..
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC
Confidence 66665552 34446666666666666665554 2 345556666666666665443 22233344444666666654421
Q ss_pred CCcCCC--CCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCC----CCh-hhcCC
Q 009119 225 SISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPP-EIGKM 297 (543)
Q Consensus 225 ~~~~~~--~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~----~~~-~l~~~ 297 (543)
+.... +|+.++++++.+...+..+..+.++..+++..+.+...........+..+....+.+.. ... .....
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAA 304 (414)
T ss_pred -cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccc
Confidence 11222 37777888887777666667778888888888877765555444445555555554442 111 14556
Q ss_pred CCCceeecCCCCcCcc
Q 009119 298 TTLRKLLLTGNPLRTL 313 (543)
Q Consensus 298 ~~L~~L~l~~~~~~~~ 313 (543)
..++.+.+..++....
T Consensus 305 ~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 305 PTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccCccccc
Confidence 6777777777776543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=5.1e-10 Score=116.79 Aligned_cols=104 Identities=32% Similarity=0.495 Sum_probs=53.3
Q ss_pred cCccEEEcCccc--cccch-HHhcCCCCCCEEEcCCC-cCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEe
Q 009119 45 VDLQKLILAHNN--IEKLK-EDLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (543)
Q Consensus 45 ~~L~~L~l~~~~--~~~l~-~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 120 (543)
++|+.|-+.++. +..++ ..|..++.|++||+++| .+..+|..++.+.+|++|+++++.+..+|..+.++..|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 345555555553 33333 23555555555555544 344555555555555555555555555555555555555555
Q ss_pred cCCCCcc-cccccccCCCCCCEEEccCCc
Q 009119 121 CSSNQLK-ELPSSLGRCLNLSDFKASNNC 148 (543)
Q Consensus 121 l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 148 (543)
+..+... .+|.....+.+|++|.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccc
Confidence 5544432 223333335555555554443
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=8.8e-11 Score=114.69 Aligned_cols=217 Identities=28% Similarity=0.389 Sum_probs=136.5
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
+..++.+.++.+.+..+...+..+++|+.+++.+|.+..+...+..+++|++|++++|.++.+ ..+..++.|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 455666777777777655567777777777777777776644466777777777777777765 2345566677777777
Q ss_pred CCcccccccccCCCCCCEEEccCCcCccCCcc-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (543)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (543)
|.+..+ ..+..++.|+.+++++|.+..+... ...+.+++.+.+.+|.+..+.. +.....+..+++..|.+..+..
T Consensus 150 N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~- 225 (414)
T KOG0531|consen 150 NLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG- 225 (414)
T ss_pred Ccchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC-
Confidence 777766 3455577777777777777766432 4667777777777777765554 3333344444666666554432
Q ss_pred ccCCC--cccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc
Q 009119 203 IGSLS--RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 203 l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~ 266 (543)
+.... +|+.++++++.+..++..+..+..+..+++.++.+..... +...+.+..+....+.+.
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhc
Confidence 11122 3677777777776665555666777777777766664421 233344444555555443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.2e-09 Score=74.40 Aligned_cols=58 Identities=40% Similarity=0.590 Sum_probs=25.5
Q ss_pred CCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCC
Q 009119 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (543)
Q Consensus 428 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 485 (543)
+|++|++++|++..++...|.++++|++|++++|.+..+.+.+|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444444444444444444444444443344444444444444444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=9.4e-10 Score=74.93 Aligned_cols=61 Identities=39% Similarity=0.633 Sum_probs=45.8
Q ss_pred CCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC
Q 009119 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (543)
Q Consensus 403 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 463 (543)
|+|++|++++|+++.++...|.++++|++|++++|.+..++..+|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777777777777777777777777777777777777777777777777753
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=3.4e-09 Score=110.72 Aligned_cols=262 Identities=22% Similarity=0.262 Sum_probs=174.0
Q ss_pred cCccEEEcCccccccchHHhcCCCCCCEEEcCCCc--Ccccch-hhhccCCCCEEEcCCCC-CCCCChhhcccCCccEEe
Q 009119 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFNS-IMKIPDEIGSATALVKFD 120 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~--l~~~~~-~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~ 120 (543)
...+...+.++.+..++... .++.|++|-+..+. +..++. .|..++.|..||+++|. +..+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 46788898888888775443 45589999999986 666655 57889999999999775 679999999999999999
Q ss_pred cCCCCcccccccccCCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCc--ccccchhhhcccccccEEECCCCcCC
Q 009119 121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK--LTVLSNNLIASWTMLTELIASKNLLN 197 (543)
Q Consensus 121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (543)
++++.++.+|..+.++..|.+|++..+... .++.....+.+|++|.+.... ........+..+.+|+.+.......
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 999999999999999999999999988654 445556669999999987654 2223333344555555555544333
Q ss_pred cCchhccCCCccc----EEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc-cc-----cC-CCCCCEEeCCCCc-c
Q 009119 198 GMPETIGSLSRLI----RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-EL-----GK-LSKLGTLDLHSNQ-L 265 (543)
Q Consensus 198 ~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~-~l-----~~-~~~L~~L~l~~n~-l 265 (543)
.+.+.+..+..|. .+.+.++.....+.....+.+|+.|.+.++.+..... +. .. ++++..+.+.++. .
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence 1222222333332 3333344445556667788888888888887763211 11 11 3344444444443 2
Q ss_pred cccchhhhcceecEEEccCCCCCC-CChhhcCCCCCceeecCCC
Q 009119 266 KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGN 308 (543)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~ 308 (543)
.......++++|+.+.+..|.... +.+....+..+..+.+.-+
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence 344445677778888888875544 3334445555554444333
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.83 E-value=6.8e-11 Score=114.43 Aligned_cols=198 Identities=26% Similarity=0.328 Sum_probs=126.3
Q ss_pred HHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc
Q 009119 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (543)
Q Consensus 5 ~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~ 84 (543)
+.+...+..+-.-+..-++ |..++. +..|++|.+++|.+........--..|++|-. ++.++.+-
T Consensus 83 lqkt~~lkl~~~pa~~pt~-pi~ifp-------------F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~ 147 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTE-PISIFP-------------FRSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALR 147 (1096)
T ss_pred HhhheeeeecccCCCCCCC-Cceecc-------------ccceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHH
Confidence 3333344344444444444 666654 57899999999988753222222234555532 22332111
Q ss_pred h-------hhhc---cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCc
Q 009119 85 A-------AIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154 (543)
Q Consensus 85 ~-------~~~~---~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~ 154 (543)
. .+++ --.|...+++.|.+..+..++.-++.++.|+++.|+++... .+..+++|++||++.|++..+|.
T Consensus 148 ~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 148 HVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred HHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccc
Confidence 1 1111 12577777788877777777777888888888888887663 67778888888888888776654
Q ss_pred c-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch--hccCCCcccEEEccCCcccc
Q 009119 155 D-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILS 221 (543)
Q Consensus 155 ~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~ 221 (543)
. ...|. |..|.+++|.++.... +.++.+|+.||++.|-+....+ .+..+..|+.|++.+|.+..
T Consensus 227 l~~~gc~-L~~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 227 LSMVGCK-LQLLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cchhhhh-heeeeecccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3 23333 8888888887776655 7777888888888887755432 35556778888888887663
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.7e-10 Score=98.70 Aligned_cols=171 Identities=20% Similarity=0.216 Sum_probs=110.4
Q ss_pred CccEEEcCccccc--cchHHhcCCCCCCEEEcCCCcCc-ccchhhhccCCCCEEEcCCCC-CCC--CChhhcccCCccEE
Q 009119 46 DLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNS-IMK--IPDEIGSATALVKF 119 (543)
Q Consensus 46 ~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~~~L~~L 119 (543)
+|++++|+...++ .+..-++.|.+|+.|.+.++++. .+...+.+..+|+.|+++.+. +++ +.-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5788888887776 44456777888888888888777 455677778888888888775 442 23346778888888
Q ss_pred ecCCCCccc--ccccccC-CCCCCEEEccCCcCc----cCCcccccCCCccEEEecCCc-ccccchhhhcccccccEEEC
Q 009119 120 DCSSNQLKE--LPSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIA 191 (543)
Q Consensus 120 ~l~~~~~~~--~~~~~~~-~~~L~~L~l~~~~~~----~i~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l 191 (543)
+++.|.... +.....+ -++|+.|+++++.-. .+..-..+|++|.+||++++. ++.-....+.+++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888776551 1111222 247777788776432 333345677888888887763 44444445666777777777
Q ss_pred CCCcCCcCch---hccCCCcccEEEccCC
Q 009119 192 SKNLLNGMPE---TIGSLSRLIRLDLHQN 217 (543)
Q Consensus 192 ~~~~~~~~~~---~l~~~~~L~~L~l~~~ 217 (543)
+.|..- +|. .+...|.|.+|++-++
T Consensus 346 sRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 776532 111 3456677777777664
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=1.4e-08 Score=87.14 Aligned_cols=182 Identities=22% Similarity=0.264 Sum_probs=133.9
Q ss_pred ccccceeeeCCCCCC-----CCChhhhccCCccEEEcCCCcCcc----C-------ChhhccCCCCceeecccCcCCCCC
Q 009119 356 SVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE----L-------PPELSSCASLQTLILSRNKIKDWP 419 (543)
Q Consensus 356 ~~~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~----l-------~~~~~~~~~L~~L~l~~~~i~~~~ 419 (543)
...+..+++++|.+. ++...+..-.+|+..+++.--... + ...+..||+|+.+++++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 467889999999886 344555566888888888753222 2 235788999999999999887533
Q ss_pred H----HHhhCCCCCCEEEcCCCCCcccCCCcc-------------CCCCCccEEEccCCcCCCCCC----CCCCCCCcCc
Q 009119 420 D----AILTSLSSLSCLKLDNNPLRQVPSDGF-------------KDIPMLQILDLSYNIASLPEN----PPFSSLPHLQ 478 (543)
Q Consensus 420 ~----~~l~~~~~L~~L~L~~n~l~~~~~~~~-------------~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~ 478 (543)
+ .-+..-..|.+|.+++|.+..+....+ ..-|.|+++.+..|.+..... ..+..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3 334567899999999998875433322 356899999999998765422 1234457899
Q ss_pred eeecCCCcccc-----C-chhhhccCCCcEEeCCCCccc-----cccccccCCCCCCeEeCCCCcCCcCC
Q 009119 479 ELYLRRMQLRE-----A-PTDILRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISALP 537 (543)
Q Consensus 479 ~L~l~~~~l~~-----l-~~~~~~~~~L~~L~l~~~~l~-----~l~~~l~~~~~L~~L~l~~~~~~~~~ 537 (543)
++.+.+|.|.- + -..++.+++|+.||+.+|-++ .+...+..++.|++|.+.+|-++.-+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 99999998871 1 234567999999999999877 23455778899999999999887543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=7.8e-10 Score=107.28 Aligned_cols=127 Identities=28% Similarity=0.304 Sum_probs=97.4
Q ss_pred CCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc
Q 009119 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (543)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 459 (543)
..|...+++.|.+..+..++.-++.++.|+|++|++++.. .+..|+.|++|||++|.+..++..+-.+|. |..|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3566777888888888888888888889999988888776 367888899999998888877766556666 8888888
Q ss_pred CCcCCCCCCCCCCCCCcCceeecCCCccccCc--hhhhccCCCcEEeCCCCccc
Q 009119 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~ 511 (543)
+|.++.... +.++.+|..|++++|-+.... ..+..+..|+.|.|.||.+-
T Consensus 241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888776533 567888888888888777332 23556778888888888764
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.1e-09 Score=91.49 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=125.8
Q ss_pred hcCeeecCCCcccccch-hhhhcccccCCCCccccccCccEEEcCccccc-cchHHhcCCCCCCEEEcCCC-cCccc--c
Q 009119 10 TSGSLNLSNRSLRDVPN-EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHN-KLSEL--P 84 (543)
Q Consensus 10 ~~~~l~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~l~~~--~ 84 (543)
.++.+|+|...|+.-.. .+. .+|.+|+.|++.|..+. .+...++...+|+.|+++.| +++.. .
T Consensus 186 Rlq~lDLS~s~it~stl~~iL------------s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGIL------------SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhHHhhcchhheeHHHHHHHH------------HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence 46788999888873221 222 23788999999999887 45567889999999999988 45533 3
Q ss_pred hhhhccCCCCEEEcCCCCCC--CCChhhcc-cCCccEEecCCCCcc----cccccccCCCCCCEEEccCCcCc--cCCcc
Q 009119 85 AAIGELHMLKSLDVSFNSIM--KIPDEIGS-ATALVKFDCSSNQLK----ELPSSLGRCLNLSDFKASNNCIT--SLPED 155 (543)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~--~l~~~~~~-~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~--~i~~~ 155 (543)
-.+.+|..|..|+++-|.+. .+...+.. -++|..|+++|+.-. .+.....+|++|.+||++++..- .....
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 36789999999999988755 22223333 478889999988533 34444578999999999998533 44556
Q ss_pred cccCCCccEEEecCCccc-ccchhhhcccccccEEECCCCcC
Q 009119 156 LADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLL 196 (543)
Q Consensus 156 ~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~~ 196 (543)
+.+++.|++|.+++|..- --..-.+...+.|.+|++.++--
T Consensus 334 ~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 888999999999998532 11112266778899999988643
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=2.9e-07 Score=94.33 Aligned_cols=84 Identities=24% Similarity=0.321 Sum_probs=35.4
Q ss_pred CceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCC
Q 009119 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (543)
Q Consensus 405 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 484 (543)
++.|+|++|.+....+..+..+++|+.|+|++|.+.+.....+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 33444444444433333344444444444444444332222244444444444444444444344444444444444444
Q ss_pred Cccc
Q 009119 485 MQLR 488 (543)
Q Consensus 485 ~~l~ 488 (543)
|.++
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 4444
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=4.2e-07 Score=93.24 Aligned_cols=105 Identities=25% Similarity=0.317 Sum_probs=73.2
Q ss_pred ccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 382 ITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 382 L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
++.|+++++.+.. +|..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++.......+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 6677777777764 666777777777777777777766666667777777777777777765555577777777777777
Q ss_pred CcCCCCCCCCCCC-CCcCceeecCCCc
Q 009119 461 NIASLPENPPFSS-LPHLQELYLRRMQ 486 (543)
Q Consensus 461 n~~~~~~~~~~~~-~~~L~~L~l~~~~ 486 (543)
|.+....+..+.. ..++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 7777666555543 2455666666664
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.48 E-value=1.9e-07 Score=80.31 Aligned_cols=176 Identities=20% Similarity=0.177 Sum_probs=99.6
Q ss_pred cCccEEEcCccccc-----cchHHhcCCCCCCEEEcCCCcCc----c-------cchhhhccCCCCEEEcCCCCCC-CCC
Q 009119 45 VDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----E-------LPAAIGELHMLKSLDVSFNSIM-KIP 107 (543)
Q Consensus 45 ~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~----~-------~~~~~~~~~~L~~L~l~~~~~~-~l~ 107 (543)
..+..++||||.+. .+...+++-.+|+..++++--.. . +..++-+||+|+.++|+.|.+. ..|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 34566666666655 23345556666666666543211 1 1234456666666666666655 222
Q ss_pred h----hhcccCCccEEecCCCCccccc-----c---------cccCCCCCCEEEccCCcCccCCc-----ccccCCCccE
Q 009119 108 D----EIGSATALVKFDCSSNQLKELP-----S---------SLGRCLNLSDFKASNNCITSLPE-----DLADCSKMSK 164 (543)
Q Consensus 108 ~----~~~~~~~L~~L~l~~~~~~~~~-----~---------~~~~~~~L~~L~l~~~~~~~i~~-----~~~~~~~L~~ 164 (543)
. .+.+.+.|.+|.+++|.+.-+. . -.+.-+.|+++.+..|++...+. .+.....|+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 2 3455666666666666555221 1 12233567777777776664432 2333357777
Q ss_pred EEecCCccccc-----chhhhcccccccEEECCCCcCCc-----CchhccCCCcccEEEccCCccc
Q 009119 165 LDVEGNKLTVL-----SNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL 220 (543)
Q Consensus 165 L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~ 220 (543)
+.+..|.|..- ....+..+.+|+.|++..|.++. +...+..++.|+.|.+.+|-++
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 77777766522 11224445677777777777642 3345667778888888888665
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.46 E-value=1.2e-07 Score=58.67 Aligned_cols=39 Identities=41% Similarity=0.647 Sum_probs=22.3
Q ss_pred CCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCC
Q 009119 499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537 (543)
Q Consensus 499 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~ 537 (543)
+|++|++++|+++.+|..+.++++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666555566666666666666666554
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.3e-08 Score=92.76 Aligned_cols=131 Identities=21% Similarity=0.149 Sum_probs=60.0
Q ss_pred cCCccEEEcCCCcC-ccC--ChhhccCCCCceeecccCc-CCCCCHHHhh-CCCCCCEEEcCCCCCcccC--CCccCCCC
Q 009119 379 AGEITKLDLSRNSI-QEL--PPELSSCASLQTLILSRNK-IKDWPDAILT-SLSSLSCLKLDNNPLRQVP--SDGFKDIP 451 (543)
Q Consensus 379 ~~~L~~L~l~~~~l-~~l--~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~--~~~~~~~~ 451 (543)
+..|+.++.++|.- ++. ..--..+++|+.+-+..|+ +++.....++ +++.|+.+++.++...... ...-.+|+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 45556666655532 221 1112345666666666653 4544443333 3556666666655433211 01123455
Q ss_pred CccEEEccCCcCCCCC-----CCCCCCCCcCceeecCCCccc--cCchhhhccCCCcEEeCCCCc
Q 009119 452 MLQILDLSYNIASLPE-----NPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNS 509 (543)
Q Consensus 452 ~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~ 509 (543)
.|+++.++.+....-. ...-.....|+.+-++++... +.-+.+..|+.|+.+++-+|+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6666666554322111 011123445555555555333 233444555555555555554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=6.3e-08 Score=74.17 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=55.0
Q ss_pred ccEEEcCccccccchHH---hcCCCCCCEEEcCCCcCcccchhhhc-cCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119 47 LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (543)
Q Consensus 47 L~~L~l~~~~~~~l~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (543)
+-.++|+.|++..++++ +.....|+.++|++|.+.++|..|.. .+.++.+++++|.+..+|..+..++.|+.++++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 44455555555544432 33344445555555555555554432 335555555555555555555555555555555
Q ss_pred CCCcccccccccCCCCCCEEEccCCcCccCC
Q 009119 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP 153 (543)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~ 153 (543)
.|.+...|..+..+.++-.|+..++....++
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 5555555544444555555555555444443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=3.6e-08 Score=75.45 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=88.4
Q ss_pred CCCCEEEcCCCcCcccchh---hhccCCCCEEEcCCCCCCCCChhhcc-cCCccEEecCCCCcccccccccCCCCCCEEE
Q 009119 68 PLLTVLNVSHNKLSELPAA---IGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (543)
Q Consensus 68 ~~L~~L~l~~~~l~~~~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 143 (543)
.-+..++|+.|.+..++++ +....+|+.+++++|.+..+|..|.. .+.++++++++|.++++|..+..++.|+.++
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4456678888888766554 45566788889999988888887765 4588899999999998988888888899999
Q ss_pred ccCCcCccCCcccccCCCccEEEecCCcccccchh
Q 009119 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178 (543)
Q Consensus 144 l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~ 178 (543)
++.|.+...|..+..+.++..|+..++.+..++.+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 98888888887777788888888888877777665
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.35 E-value=4.1e-08 Score=89.51 Aligned_cols=154 Identities=22% Similarity=0.211 Sum_probs=96.6
Q ss_pred cCCccEEEcCCCc-CccCC--hhhccCCCCceeecccC-cCCCCCHHHh-hCCCCCCEEEcCCCCC-cccCCCcc-CCCC
Q 009119 379 AGEITKLDLSRNS-IQELP--PELSSCASLQTLILSRN-KIKDWPDAIL-TSLSSLSCLKLDNNPL-RQVPSDGF-KDIP 451 (543)
Q Consensus 379 ~~~L~~L~l~~~~-l~~l~--~~~~~~~~L~~L~l~~~-~i~~~~~~~l-~~~~~L~~L~L~~n~l-~~~~~~~~-~~~~ 451 (543)
+.-+.++++..|. +++.. ..-..+..|+.|+.+++ .+++.....+ .++++|+.+.+.+|+- ++.....+ .+++
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 3445556655553 44422 12356778888888886 4555444333 3578888888888873 22222222 4577
Q ss_pred CccEEEccCCcCCCC--CCCCCCCCCcCceeecCCC-cccc-----CchhhhccCCCcEEeCCCCccc--cccccccCCC
Q 009119 452 MLQILDLSYNIASLP--ENPPFSSLPHLQELYLRRM-QLRE-----APTDILRLQQLRILDLSQNSLQ--SIPEGFKNLT 521 (543)
Q Consensus 452 ~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~-~l~~-----l~~~~~~~~~L~~L~l~~~~l~--~l~~~l~~~~ 521 (543)
.|+.+++.++..... ....-.+++.|+.|.++.| .++. +...-.++..|+.+.+++|... ..-+.+..|+
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 888888887654322 1222357788888888877 3442 2333345678888888888754 3346678888
Q ss_pred CCCeEeCCCCc
Q 009119 522 SLTELDLSDNN 532 (543)
Q Consensus 522 ~L~~L~l~~~~ 532 (543)
+|+.+++-+|+
T Consensus 427 ~Leri~l~~~q 437 (483)
T KOG4341|consen 427 NLERIELIDCQ 437 (483)
T ss_pred ccceeeeechh
Confidence 88888888774
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.31 E-value=1.7e-06 Score=69.66 Aligned_cols=121 Identities=18% Similarity=0.362 Sum_probs=59.1
Q ss_pred hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcC
Q 009119 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (543)
Q Consensus 398 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 477 (543)
.|..+.+|+.+.+.. .+..+....|.++++|+.+.+.++ +..++..+|.++++++.+.+.+ .+......+|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 356667777777764 466666666777777777777664 6667777777777777777765 4444445566777777
Q ss_pred ceeecCCCccccCchh-hhccCCCcEEeCCCCccccc-cccccCCCCCC
Q 009119 478 QELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI-PEGFKNLTSLT 524 (543)
Q Consensus 478 ~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~ 524 (543)
+.+.+..+ ++.++.. +..+ .|+.+.+.+ .+..+ ...|.+|++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77777654 5544443 3344 777777765 44444 24466666664
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.30 E-value=1.2e-06 Score=72.13 Aligned_cols=82 Identities=26% Similarity=0.318 Sum_probs=39.0
Q ss_pred CceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCC-CCCCCCCCcCceeecC
Q 009119 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLR 483 (543)
Q Consensus 405 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~ 483 (543)
...+|+++|.+..... |..++.|.+|.+.+|+|+.+...--..++.|..|.+.+|.+.... ...+..||+|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445555555444333 445555555555555555544443333445555555555443221 1223445555555555
Q ss_pred CCccc
Q 009119 484 RMQLR 488 (543)
Q Consensus 484 ~~~l~ 488 (543)
+|.++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55444
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=3.6e-07 Score=79.69 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=116.5
Q ss_pred ccEEEcCccccccch--HHh-cCCCCCCEEEcCCCcCccc---chhhhccCCCCEEEcCCCCCCCCChhh-cccCCccEE
Q 009119 47 LQKLILAHNNIEKLK--EDL-RNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKF 119 (543)
Q Consensus 47 L~~L~l~~~~~~~l~--~~~-~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L 119 (543)
++.+.+.++.|...- ..| ..++.++++||.+|.+.+. ...+.++|+|+.|+++.|++...-..+ ....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 446667777766432 233 3577888888888888744 334567888888888888776332222 356678888
Q ss_pred ecCCCCcc--cccccccCCCCCCEEEccCCcCccC---CcccccC-CCccEEEecCCcccc-c-chhhhcccccccEEEC
Q 009119 120 DCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL---PEDLADC-SKMSKLDVEGNKLTV-L-SNNLIASWTMLTELIA 191 (543)
Q Consensus 120 ~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i---~~~~~~~-~~L~~L~l~~~~i~~-~-~~~~~~~~~~L~~L~l 191 (543)
-+.|+.+. .....+..++.++.|.++.|....+ ....... +.++++...+|.... . ......-++++..+-+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 88777655 4445566777777777777743311 1111111 234444444443220 0 0011222345555555
Q ss_pred CCCcCCcCch--hccCCCcccEEEccCCccccCC--CCCcCCCCCcEEEcCCCCCCCC-----C--ccccCCCCCCEEeC
Q 009119 192 SKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSAL-----P--AELGKLSKLGTLDL 260 (543)
Q Consensus 192 ~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~l~~l-----~--~~l~~~~~L~~L~l 260 (543)
-.+++..... .....+.+-.|+++.+++.... .++.+.+.|+.+.+.++++.+- + -.++.+++++.|+=
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 5555533321 2233444555666665555322 2345566666666666655411 1 12456677777764
Q ss_pred C
Q 009119 261 H 261 (543)
Q Consensus 261 ~ 261 (543)
+
T Consensus 287 s 287 (418)
T KOG2982|consen 287 S 287 (418)
T ss_pred c
Confidence 4
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=8.4e-06 Score=76.67 Aligned_cols=136 Identities=16% Similarity=0.232 Sum_probs=86.3
Q ss_pred ccccceeeeCCCCCCCCChhhhccCCccEEEcCCCc-CccCChhhccCCCCceeecccC-cCCCCCHHHhhCCCCCCEEE
Q 009119 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLK 433 (543)
Q Consensus 356 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~ 433 (543)
...+..|++++|.++.+|. -.++|++|.+++|. ++.+|..+ .++|++|++++| .+..++ ++|+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEE
Confidence 3678889999888888872 24578889988764 56677544 257888898887 554332 4678888
Q ss_pred cCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCc
Q 009119 434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 509 (543)
Q Consensus 434 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 509 (543)
+.++....+.. -.++|+.|.+.++.........-.-.++|++|++++|....+|..+. .+|+.|.++.+.
T Consensus 119 L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IKGSATDSIKN----VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eCCCCCccccc----CcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 87665443321 12467777775432111110000122678889888887666665544 588888887763
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=7.8e-06 Score=76.89 Aligned_cols=134 Identities=18% Similarity=0.217 Sum_probs=93.4
Q ss_pred hhccCCccEEEcCCCcCccCChhhccCCCCceeecccC-cCCCCCHHHhhCCCCCCEEEcCCC-CCcccCCCccCCCCCc
Q 009119 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPML 453 (543)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L 453 (543)
+..+..++.|++++|.++.+|. -..+|+.|.+++| .++.++. .+ .++|++|++++| .+..++ ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc-------ccc
Confidence 4457899999999999999882 2346999999986 4544442 22 368999999998 444332 578
Q ss_pred cEEEccCCcCCCCCCCCCCCC-CcCceeecCCCccc---cCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCC
Q 009119 454 QILDLSYNIASLPENPPFSSL-PHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 529 (543)
Q Consensus 454 ~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~ 529 (543)
+.|+++++.... +..+ ++|++|.+.+++.. .++.. -.++|++|++++|....+|..+. .+|+.|+++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 889988765443 2233 57889988654311 22211 12789999999998766665444 589999988
Q ss_pred CC
Q 009119 530 DN 531 (543)
Q Consensus 530 ~~ 531 (543)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 76
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=2.1e-06 Score=53.12 Aligned_cols=38 Identities=42% Similarity=0.675 Sum_probs=23.7
Q ss_pred CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc
Q 009119 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (543)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~ 83 (543)
+|++|++++|.+++++..++++++|+.|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 46666666666666665566666666666666666655
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=1.9e-06 Score=71.05 Aligned_cols=129 Identities=26% Similarity=0.370 Sum_probs=97.8
Q ss_pred cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCC
Q 009119 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (543)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~ 438 (543)
-+++++++.++..+...-.-......+|+++|.+..++ .|..++.|..|.+.+|.|+.+.+..-.-+++|+.|.+.+|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 35667777666544331112346678999999988866 36788999999999999999998877778999999999999
Q ss_pred CcccCC-CccCCCCCccEEEccCCcCCCC---CCCCCCCCCcCceeecCCCccc
Q 009119 439 LRQVPS-DGFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 439 l~~~~~-~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
+..++. ..+..||+|++|.+-+|.+... -...+..+|+|+.|+.+.-.-.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 887543 3478899999999999987643 1223567899999998876443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.18 E-value=4.3e-06 Score=67.32 Aligned_cols=118 Identities=17% Similarity=0.359 Sum_probs=75.2
Q ss_pred CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhc
Q 009119 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILR 496 (543)
Q Consensus 418 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~ 496 (543)
++..+|.++.+|+.+.+.. .+..++..+|..+++|+.+.+.++ +..+...+|..+++++.+.+.+ .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3455688999999999985 688899999999999999999885 7777778899999999999987 66555544 455
Q ss_pred cCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCCcCCCCcC
Q 009119 497 LQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELV 541 (543)
Q Consensus 497 ~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 541 (543)
+++|+.+++..+ +..+ ...+..+ .|+.+.+.+ .+..++...|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F 122 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAF 122 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccc
Confidence 999999999875 7766 4567887 999999886 6666776654
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=9.6e-07 Score=77.13 Aligned_cols=178 Identities=22% Similarity=0.299 Sum_probs=87.5
Q ss_pred cccceeeeCCCCCC---CCChhhhccCCccEEEcCCCcCccCChhh-ccCCCCceeecccCcCCC-CCHHHhhCCCCCCE
Q 009119 357 VTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSC 431 (543)
Q Consensus 357 ~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~ 431 (543)
..++.+++.+|.+. ++...+.++|.|+.|+++.|.+...-..+ ....+|+.|.+.+..+.- .....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 44566666666555 34444556788888888888765522222 355677888887776552 22233466777788
Q ss_pred EEcCCCCCcc--cCCCccCCC-CCccEEEccCCcCCCC--CCCCCCCCCcCceeecCCCccccC--chhhhccCCCcEEe
Q 009119 432 LKLDNNPLRQ--VPSDGFKDI-PMLQILDLSYNIASLP--ENPPFSSLPHLQELYLRRMQLREA--PTDILRLQQLRILD 504 (543)
Q Consensus 432 L~L~~n~l~~--~~~~~~~~~-~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~~~~L~~L~ 504 (543)
|.++.|.+.. +.++..... +.+.++.+.+|..... ...--.-+|++..+.+..|.++.. .+.....+.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 8777775443 222212111 2334443333321100 000012235555555555544422 12233344455555
Q ss_pred CCCCcccccc--ccccCCCCCCeEeCCCCcCC
Q 009119 505 LSQNSLQSIP--EGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 505 l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~ 534 (543)
|+.+++.... ..+..++.|.-|.+.++++.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 5555544321 23444555555555555544
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=5.7e-06 Score=84.72 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=41.8
Q ss_pred ccCccEEEcCccccc--cchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCC--hhhcccCCccEE
Q 009119 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKF 119 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L 119 (543)
+|.|+.|.+.+-.+. ++...++++|+|..||+|+++++.+ ..++++++|+.|.+.+-.+..-. ..+.++++|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 455555555554443 2334455555555555555555544 44555555555555544444211 234455555555
Q ss_pred ecCCCCc
Q 009119 120 DCSSNQL 126 (543)
Q Consensus 120 ~l~~~~~ 126 (543)
|+|....
T Consensus 226 DIS~~~~ 232 (699)
T KOG3665|consen 226 DISRDKN 232 (699)
T ss_pred ecccccc
Confidence 5555443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=7.9e-06 Score=83.69 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=75.0
Q ss_pred CCccEEEcCCCcCc--cCChh-hccCCCCceeecccCcCCCC-CHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccE
Q 009119 380 GEITKLDLSRNSIQ--ELPPE-LSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (543)
Q Consensus 380 ~~L~~L~l~~~~l~--~l~~~-~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 455 (543)
.+|+.|++++...- ..|.. -.-+|+|+.|.+++-.+... ....+.++|+|..||+++.+++.+ .+.+.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46677777664321 12221 13456677777766554432 223345566677777766666655 33556666666
Q ss_pred EEccCCcCCC-CCCCCCCCCCcCceeecCCCccccCch-------hhhccCCCcEEeCCCCcccc--ccccccCCCCCCe
Q 009119 456 LDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPT-------DILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTE 525 (543)
Q Consensus 456 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~-------~~~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~ 525 (543)
|.+.+=.+.. .....+..+++|+.|++|.......+. .-..+|.|+.||.||..+.. +...+..-|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6665533322 122234456666666666654332111 11225666666666665541 2223344455555
Q ss_pred EeCC
Q 009119 526 LDLS 529 (543)
Q Consensus 526 L~l~ 529 (543)
+.+-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5433
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=3.4e-06 Score=73.04 Aligned_cols=99 Identities=24% Similarity=0.286 Sum_probs=61.8
Q ss_pred CCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCC-CccCCCCCccEEEc
Q 009119 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDL 458 (543)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l 458 (543)
.+.+.|++-+|.+.+|. ....++.|+.|.|+-|+|+.+.+ +..|++|+.|+|..|.|.++.. +.+.++|+|+.|++
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45566677777776653 23567777777777777777655 5677777777777777766433 23567777777777
Q ss_pred cCCcCCCCCC-----CCCCCCCcCceee
Q 009119 459 SYNIASLPEN-----PPFSSLPHLQELY 481 (543)
Q Consensus 459 ~~n~~~~~~~-----~~~~~~~~L~~L~ 481 (543)
..|.-....+ ..+..+|+|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 7664322211 1234567777664
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=5.4e-05 Score=65.51 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=15.4
Q ss_pred CCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (543)
Q Consensus 402 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n 437 (543)
...|+.+++.+..++.... |..+++|+.|.++.|
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDN 75 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCC
Confidence 3444444444444443322 344455555555555
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00016 Score=62.66 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=27.5
Q ss_pred CCccEEEcCCCcCccCChhhccCCCCceeecccC--cCCCCCHHHhhCCCCCCEEEcCCCCCcc
Q 009119 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRN--KIKDWPDAILTSLSSLSCLKLDNNPLRQ 441 (543)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~L~~L~L~~n~l~~ 441 (543)
..++.+++.++.++.+. .+..+++|++|.++.| .+..-..-....+|+|+++++++|++..
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 34444444444444432 1334555566666555 3332111112334555555555555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=5.4e-05 Score=65.84 Aligned_cols=81 Identities=23% Similarity=0.241 Sum_probs=50.7
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch--h
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--A 86 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~--~ 86 (543)
.++..|||.|+++++|. +-+. ++.|+.|.|+-|.|+.+ ..|..|++|++|.|..|.|.++.+ .
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~k------------Mp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEK------------MPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHh------------cccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34455677777777643 2222 55677777777777666 446667777777777776665533 4
Q ss_pred hhccCCCCEEEcCCCCCC
Q 009119 87 IGELHMLKSLDVSFNSIM 104 (543)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~ 104 (543)
+.++++|+.|=|..|+..
T Consensus 84 LknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcCchhhhHhhccCCcc
Confidence 556666666666666544
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.48 E-value=0.0012 Score=66.79 Aligned_cols=132 Identities=21% Similarity=0.172 Sum_probs=81.6
Q ss_pred HHHHhhcCeeecCCCc-ccccchhhhhcccccCCCCccccccCccEEEcCcc-cc-cc----chHHhcCCCCCCEEEcCC
Q 009119 5 LKAARTSGSLNLSNRS-LRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-NI-EK----LKEDLRNLPLLTVLNVSH 77 (543)
Q Consensus 5 ~~~~~~~~~l~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~-~~----l~~~~~~~~~L~~L~l~~ 77 (543)
.+..+.++.+.+.+.. +++.. +.... +.+++|+.|+++++ .. .. .......+++|+++++++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~--~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS--LDALA---------LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred HhhCchhhHhhhcccccCChhh--HHHHH---------hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 3445777777777653 44322 11111 22788999999873 21 11 123466789999999999
Q ss_pred Cc-Cccc-chhh-hccCCCCEEEcCCCC-CC--CCChhhcccCCccEEecCCCCcc---cccccccCCCCCCEEEccCC
Q 009119 78 NK-LSEL-PAAI-GELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN 147 (543)
Q Consensus 78 ~~-l~~~-~~~~-~~~~~L~~L~l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~ 147 (543)
+. +++. -.++ ..|++|++|.+.++. ++ .+......++.|++|+++++... .+.....++++++.+.+...
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 87 5533 1233 348899999988777 45 33344567888999999988754 12233455777776655443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.001 Score=34.03 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=9.2
Q ss_pred CCeEeCCCCcCCcCCCC
Q 009119 523 LTELDLSDNNISALPPE 539 (543)
Q Consensus 523 L~~L~l~~~~~~~~~~~ 539 (543)
|+.|+|++|+|+.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555555555
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.22 E-value=0.0022 Score=30.29 Aligned_cols=17 Identities=47% Similarity=0.841 Sum_probs=7.9
Q ss_pred CCCCeEeCCCCcCCcCC
Q 009119 521 TSLTELDLSDNNISALP 537 (543)
Q Consensus 521 ~~L~~L~l~~~~~~~~~ 537 (543)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666666666666554
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.18 E-value=0.0038 Score=33.48 Aligned_cols=23 Identities=52% Similarity=0.834 Sum_probs=18.2
Q ss_pred CCCCCeEeCCCCcCCcCCCCcCC
Q 009119 520 LTSLTELDLSDNNISALPPELVS 542 (543)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~ 542 (543)
+++|+.|++++|+|+.+|++.|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888887764
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.18 E-value=0.0038 Score=33.48 Aligned_cols=23 Identities=52% Similarity=0.834 Sum_probs=18.2
Q ss_pred CCCCCeEeCCCCcCCcCCCCcCC
Q 009119 520 LTSLTELDLSDNNISALPPELVS 542 (543)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~ 542 (543)
+++|+.|++++|+|+.+|++.|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888887764
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.16 E-value=0.0024 Score=32.61 Aligned_cols=19 Identities=58% Similarity=0.838 Sum_probs=10.9
Q ss_pred CcEEeCCCCcccccccccc
Q 009119 500 LRILDLSQNSLQSIPEGFK 518 (543)
Q Consensus 500 L~~L~l~~~~l~~l~~~l~ 518 (543)
|++|++++|+++.+|..|.
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666665555443
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.11 E-value=0.0014 Score=66.23 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=16.0
Q ss_pred cCCccEEEcCCCc-Ccc--CChhhccCCCCceeeccc
Q 009119 379 AGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSR 412 (543)
Q Consensus 379 ~~~L~~L~l~~~~-l~~--l~~~~~~~~~L~~L~l~~ 412 (543)
++.++.+.+.++. +++ +......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555542 222 223344555555555554
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.05 E-value=4.9e-05 Score=74.51 Aligned_cols=177 Identities=28% Similarity=0.303 Sum_probs=100.6
Q ss_pred cceeeeCCCCCCC-----CChhhhccCCccEEEcCCCcCcc-----CChhhccC-CCCceeecccCcCCCCCH----HHh
Q 009119 359 SKELSLEGMNLSA-----IPSEIWEAGEITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDWPD----AIL 423 (543)
Q Consensus 359 l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~~~i~~~~~----~~l 423 (543)
+..+.+.+|.+.. +...+...+.|..|++++|.+.+ +...+... ..+++|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666665552 23334446677777777777664 11222222 456667777776665332 334
Q ss_pred hCCCCCCEEEcCCCCCcccC----CCcc----CCCCCccEEEccCCcCCCCC----CCCCCCCCc-CceeecCCCcccc-
Q 009119 424 TSLSSLSCLKLDNNPLRQVP----SDGF----KDIPMLQILDLSYNIASLPE----NPPFSSLPH-LQELYLRRMQLRE- 489 (543)
Q Consensus 424 ~~~~~L~~L~L~~n~l~~~~----~~~~----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~-L~~L~l~~~~l~~- 489 (543)
.....++.++++.|.+...+ ..++ ....++++|.+.+|.++... ...+...++ +.+|++..|++..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 45677777777777664211 1112 23556777777777655321 112344455 6667777776662
Q ss_pred ----Cchhhhcc-CCCcEEeCCCCccc-----cccccccCCCCCCeEeCCCCcCCc
Q 009119 490 ----APTDILRL-QQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISA 535 (543)
Q Consensus 490 ----l~~~~~~~-~~L~~L~l~~~~l~-----~l~~~l~~~~~L~~L~l~~~~~~~ 535 (543)
+...+..+ ..++.++++.|+++ .+.+.+..++.++++.+++|++.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22333344 56677777777766 235566777777777777777653
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.34 E-value=0.01 Score=27.97 Aligned_cols=15 Identities=60% Similarity=0.822 Sum_probs=5.9
Q ss_pred CCcEEeCCCCccccc
Q 009119 499 QLRILDLSQNSLQSI 513 (543)
Q Consensus 499 ~L~~L~l~~~~l~~l 513 (543)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555554443
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.31 E-value=0.00026 Score=69.50 Aligned_cols=180 Identities=24% Similarity=0.263 Sum_probs=105.0
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCcccccc-----chHHhcCC-CCCCEEEcCCCcCc---
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS--- 81 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~-~~L~~L~l~~~~l~--- 81 (543)
+..+++.++.+.+-+...... .+...+.|+.|++++|.+.. +...+... ..++.|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 456677777776444433332 12236677777777777661 22333333 55666777777665
Q ss_pred --ccchhhhccCCCCEEEcCCCCCC-----CCChhhc----ccCCccEEecCCCCccc-----ccccccCCCC-CCEEEc
Q 009119 82 --ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFKA 144 (543)
Q Consensus 82 --~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~----~~~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~l 144 (543)
.+.+.+..+.+++.++++.|.+. .++..+. ...++++|.+.+|.++. +...+...+. +..+++
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 33456666777777777777664 1223333 46677777777777661 1123344444 566777
Q ss_pred cCCcCccC-----CcccccC-CCccEEEecCCcccccch----hhhcccccccEEECCCCcCCc
Q 009119 145 SNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLLNG 198 (543)
Q Consensus 145 ~~~~~~~i-----~~~~~~~-~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~ 198 (543)
..|.+.+. ...+... ..+++++++.|.+..... ..+..++.++++.+..|.+..
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 77766532 2334444 667788888887764332 224445677788888887754
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.003 Score=52.74 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC-CCCCCCCC-CCCCcCceeecCCC-ccccC-chhhhccCCCcEE
Q 009119 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA-SLPENPPF-SSLPHLQELYLRRM-QLREA-PTDILRLQQLRIL 503 (543)
Q Consensus 428 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~~-~l~~l-~~~~~~~~~L~~L 503 (543)
.++.++-+++.|..++.+.+..+++++.|.+.+|.- .+.....+ .-.++|+.|++++| +|+.. -..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345556666666666655566666666666665431 11100001 13466666666666 56632 1234455666666
Q ss_pred eCCC
Q 009119 504 DLSQ 507 (543)
Q Consensus 504 ~l~~ 507 (543)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.15 E-value=0.0013 Score=55.87 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=52.1
Q ss_pred HhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEE
Q 009119 63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF 142 (543)
Q Consensus 63 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 142 (543)
.+..+...+.||++.|++..+...|+-++.|..|+++.+.+.-+|..+++...+..++...|.....|.+++..+.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 35555556666666665555544555555666666666666666666666666666666666666666666666666666
Q ss_pred EccCCcC
Q 009119 143 KASNNCI 149 (543)
Q Consensus 143 ~l~~~~~ 149 (543)
+..++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6665543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.06 E-value=0.0018 Score=55.17 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=39.8
Q ss_pred hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEe
Q 009119 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l 167 (543)
......+.||++.|.+..+-..+..++.+..++++.+++..+|..++....+.+++...|+.+..|.++...+++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 33444444444444444443444444444444554444444444444444444444444444444444444455555444
Q ss_pred cCCc
Q 009119 168 EGNK 171 (543)
Q Consensus 168 ~~~~ 171 (543)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 4444
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=0.033 Score=46.72 Aligned_cols=83 Identities=23% Similarity=0.098 Sum_probs=53.4
Q ss_pred CCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcc-cCCCcc-CCCCCccEEEccCC-cCCCCCCCCCCCCCcCcee
Q 009119 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480 (543)
Q Consensus 404 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~-~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L 480 (543)
.++.++-+++.|..+...-+.++++++.|.+.+|.-.+ ...+.+ +-.++|+.|++++| .+++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46677777777777777777777777777777775332 110111 13467888888865 4555555556777888887
Q ss_pred ecCCCc
Q 009119 481 YLRRMQ 486 (543)
Q Consensus 481 ~l~~~~ 486 (543)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 777653
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.99 E-value=0.19 Score=26.70 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=10.6
Q ss_pred CCCCEEEcCCCCCcccCCCcc
Q 009119 427 SSLSCLKLDNNPLRQVPSDGF 447 (543)
Q Consensus 427 ~~L~~L~L~~n~l~~~~~~~~ 447 (543)
++|++|+|++|++..++...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555544433
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.99 E-value=0.19 Score=26.70 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=10.6
Q ss_pred CCCCEEEcCCCCCcccCCCcc
Q 009119 427 SSLSCLKLDNNPLRQVPSDGF 447 (543)
Q Consensus 427 ~~L~~L~L~~n~l~~~~~~~~ 447 (543)
++|++|+|++|++..++...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555544433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.53 E-value=0.19 Score=26.56 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=13.8
Q ss_pred CCCCeEeCCCCcCCcCCC
Q 009119 521 TSLTELDLSDNNISALPP 538 (543)
Q Consensus 521 ~~L~~L~l~~~~~~~~~~ 538 (543)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888888776
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.88 E-value=0.24 Score=25.71 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=7.9
Q ss_pred CCCCCeEeCCCCcCC
Q 009119 520 LTSLTELDLSDNNIS 534 (543)
Q Consensus 520 ~~~L~~L~l~~~~~~ 534 (543)
+++|+.|+|++|+|+
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 356667777777665
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.09 E-value=0.8 Score=24.37 Aligned_cols=16 Identities=56% Similarity=0.787 Sum_probs=11.0
Q ss_pred CCCCeEeCCCCcCCcC
Q 009119 521 TSLTELDLSDNNISAL 536 (543)
Q Consensus 521 ~~L~~L~l~~~~~~~~ 536 (543)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777776654
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.01 E-value=2.2 Score=23.11 Aligned_cols=15 Identities=53% Similarity=0.762 Sum_probs=10.5
Q ss_pred CCCCeEeCCCCcCCc
Q 009119 521 TSLTELDLSDNNISA 535 (543)
Q Consensus 521 ~~L~~L~l~~~~~~~ 535 (543)
++|++|+|++|.|.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777777754
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.91 E-value=2.7 Score=22.24 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=12.5
Q ss_pred CCCCCeEeCCCCc-CCc
Q 009119 520 LTSLTELDLSDNN-ISA 535 (543)
Q Consensus 520 ~~~L~~L~l~~~~-~~~ 535 (543)
|++|+.|+|++|+ +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 5788999999885 654
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.95 E-value=20 Score=35.02 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=8.3
Q ss_pred CCCCceeecccCcCCC
Q 009119 402 CASLQTLILSRNKIKD 417 (543)
Q Consensus 402 ~~~L~~L~l~~~~i~~ 417 (543)
-+.+..|++++|...+
T Consensus 439 tqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGD 454 (553)
T ss_pred CcccccccccCCCccc
Confidence 3445555555555544
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.53 E-value=4.3 Score=40.10 Aligned_cols=64 Identities=23% Similarity=0.187 Sum_probs=39.1
Q ss_pred CCCCCccEEEccCCcCCCCCCCC--CCCCCcCceeecCCC--ccccCchh-hhccCCCcEEeCCCCccc
Q 009119 448 KDIPMLQILDLSYNIASLPENPP--FSSLPHLQELYLRRM--QLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 448 ~~~~~L~~L~l~~n~~~~~~~~~--~~~~~~L~~L~l~~~--~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
.+.+.+..+.+++|.+-.+.... -...|+|+.|+|++| .+...++. -.....|++|-+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 45677788888888765543211 134578888888888 44432221 112467788888888764
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.25 E-value=2.8 Score=41.35 Aligned_cols=61 Identities=34% Similarity=0.296 Sum_probs=28.8
Q ss_pred CCccEEEcCCCcCccCC---hhhccCCCCceeecccC--cCCCCCHHHhhCCCCCCEEEcCCCCCc
Q 009119 380 GEITKLDLSRNSIQELP---PELSSCASLQTLILSRN--KIKDWPDAILTSLSSLSCLKLDNNPLR 440 (543)
Q Consensus 380 ~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~L~~L~L~~n~l~ 440 (543)
+.+..+++++|.+.++. ......|+|..|+|++| .+.......=-+...|++|.+.||++.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 44555556665554432 11234456666666666 333221111122345666666666654
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.44 E-value=47 Score=32.58 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCCCCcEEEcCCCCCC-----CCCccccCCCCCCEEeCCCCccc
Q 009119 228 GCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 228 ~~~~L~~l~l~~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~ 266 (543)
.-+.+.++++++|... .+|..+.....++.+..+.|..+
T Consensus 438 stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 438 STQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3445556666665544 23444555556666666666544
No 94
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=53.70 E-value=8.5 Score=20.87 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.4
Q ss_pred cCeeecCCCcccccchhh
Q 009119 11 SGSLNLSNRSLRDVPNEV 28 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~ 28 (543)
-.++++++.+++++|..+
T Consensus 10 ~~~V~C~~~~L~~vP~~l 27 (28)
T PF01462_consen 10 GLTVDCSGRGLTAVPSDL 27 (28)
T ss_dssp TTEEEETTSS-SSS-STS
T ss_pred CCEeECCCCCCCccCCCC
Confidence 357899999999999865
No 95
>PRK09718 hypothetical protein; Validated
Probab=49.68 E-value=42 Score=33.09 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=19.0
Q ss_pred CceeecCCCccccCchhhhccCCCcEEeCCCCccccc
Q 009119 477 LQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI 513 (543)
Q Consensus 477 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l 513 (543)
++...+.+|.++.. .+. -+.|+.+|++.|.+..+
T Consensus 210 aKka~F~~cDLt~A--dF~-qT~LkgVDFSdC~Le~~ 243 (512)
T PRK09718 210 AKEISFIKSNLTAV--MFD-HVRISTGNFKDCITEQL 243 (512)
T ss_pred CCCCEEeCCCCCCC--CcC-CCcCCCcccccccccce
Confidence 34555555555432 222 26777777777776644
No 96
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=29.17 E-value=34 Score=19.30 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.2
Q ss_pred CeeecCCCcccccchhhhh
Q 009119 12 GSLNLSNRSLRDVPNEVYK 30 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~ 30 (543)
..+++++.+++++|..+..
T Consensus 11 ~~V~C~~~~L~~vP~~iP~ 29 (33)
T smart00013 11 TAVDCSGRGLTEVPLDLPP 29 (33)
T ss_pred CEeEeCCCCcCccCCCCCc
Confidence 5789999999999988754
No 97
>PRK09718 hypothetical protein; Validated
Probab=27.92 E-value=1.1e+02 Score=30.26 Aligned_cols=16 Identities=0% Similarity=-0.058 Sum_probs=10.6
Q ss_pred CcCceeecCCCccccC
Q 009119 475 PHLQELYLRRMQLREA 490 (543)
Q Consensus 475 ~~L~~L~l~~~~l~~l 490 (543)
..|+..+++.|.+..+
T Consensus 228 T~LkgVDFSdC~Le~~ 243 (512)
T PRK09718 228 VRISTGNFKDCITEQL 243 (512)
T ss_pred CcCCCcccccccccce
Confidence 5577777777766644
No 98
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=23.72 E-value=8.2 Score=30.16 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=25.2
Q ss_pred cchHHhcCCCCCCEEEcCCC---cCcccchhhhccCCCCEEEcCCCCCC---CCChhhcccCCc
Q 009119 59 KLKEDLRNLPLLTVLNVSHN---KLSELPAAIGELHMLKSLDVSFNSIM---KIPDEIGSATAL 116 (543)
Q Consensus 59 ~l~~~~~~~~~L~~L~l~~~---~l~~~~~~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L 116 (543)
.+...|.+++.| ..+++.= ..+.+...|.+++.|+. +++..... .+...|.+++.+
T Consensus 27 ~m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l 88 (120)
T PF03382_consen 27 DMSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL 88 (120)
T ss_pred eHHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-CcccccccccccHHHHHhhhHHc
Confidence 444455555555 2223221 12233445556666665 55543332 233344455555
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.57 E-value=76 Score=38.87 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=18.0
Q ss_pred EcCCCcCccCCh-hhccCCCCceeecccCcCC
Q 009119 386 DLSRNSIQELPP-ELSSCASLQTLILSRNKIK 416 (543)
Q Consensus 386 ~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~ 416 (543)
||++|+|+.++. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 355666666554 3455666666666666554
Done!