Query 009119
Match_columns 543
No_of_seqs 246 out of 3119
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 19:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 3.1E-49 1.1E-53 408.2 44.0 473 11-534 14-560 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-50 1.1E-54 415.6 34.3 472 12-534 14-558 (606)
3 3rgz_A Protein brassinosteroid 100.0 1.2E-49 4.1E-54 419.9 37.5 509 4-538 121-722 (768)
4 3rgz_A Protein brassinosteroid 100.0 7.6E-50 2.6E-54 421.4 34.8 510 5-541 96-701 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 2E-47 6.7E-52 400.1 47.0 504 12-539 7-602 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-49 1E-53 408.3 32.3 452 9-512 32-559 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-47 1.9E-51 396.6 43.8 492 9-535 25-623 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 3.8E-47 1.3E-51 390.2 34.9 474 11-538 9-536 (570)
9 3t6q_A CD180 antigen; protein- 100.0 6E-46 2E-50 383.7 40.1 457 46-540 13-542 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 9.2E-45 3.2E-49 386.6 36.0 470 12-540 7-545 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-44 6.4E-49 368.2 31.7 466 10-534 6-510 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 6.8E-44 2.3E-48 379.9 30.6 469 8-534 23-560 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.9E-43 6.4E-48 362.8 31.2 455 9-512 28-532 (570)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-43 7.3E-48 357.6 28.6 447 12-535 3-482 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-42 1.6E-46 350.6 32.6 458 44-541 4-493 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-41 1.3E-45 350.6 37.9 475 12-534 34-580 (635)
17 4eco_A Uncharacterized protein 100.0 6.7E-43 2.3E-47 360.0 23.8 405 45-513 81-602 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 2.3E-42 7.9E-47 361.1 27.1 431 45-534 323-864 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-41 5.7E-46 343.7 24.8 424 9-512 21-482 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-40 3.7E-45 340.4 30.0 445 47-534 33-510 (562)
21 4eco_A Uncharacterized protein 100.0 8E-41 2.7E-45 344.6 28.4 413 9-490 81-602 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 5.6E-41 1.9E-45 350.7 26.9 435 9-512 323-865 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-38 4.2E-43 325.1 26.6 441 10-511 32-510 (562)
24 1jl5_A Outer protein YOPM; leu 100.0 2E-38 7E-43 312.3 25.0 402 44-534 10-429 (454)
25 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-37 9E-42 321.7 32.8 451 9-511 52-580 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 1.1E-37 3.8E-42 307.0 25.7 392 7-511 9-429 (454)
27 1o6v_A Internalin A; bacterial 100.0 2.9E-36 9.8E-41 300.1 33.8 350 88-515 43-392 (466)
28 1o6v_A Internalin A; bacterial 100.0 1.4E-35 4.9E-40 295.1 33.8 347 44-491 45-391 (466)
29 3v47_A TOLL-like receptor 5B a 100.0 4.1E-35 1.4E-39 291.9 31.1 368 71-511 13-408 (455)
30 3v47_A TOLL-like receptor 5B a 100.0 5.3E-35 1.8E-39 291.1 31.2 368 47-488 12-408 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-35 8.7E-40 290.5 27.3 363 43-529 40-407 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 7.1E-34 2.4E-38 280.2 29.3 259 5-310 38-298 (457)
33 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5.1E-37 263.1 32.1 306 64-463 40-345 (347)
34 4fmz_A Internalin; leucine ric 100.0 2.2E-32 7.6E-37 261.9 31.6 304 43-440 42-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 1.2E-31 4E-36 260.9 28.8 305 136-534 44-352 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 1.4E-31 4.9E-36 267.7 29.8 109 380-488 224-333 (477)
37 2id5_A Lingo-1, leucine rich r 100.0 1.6E-31 5.5E-36 267.3 26.8 106 359-464 226-333 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 8.9E-31 3.1E-35 254.7 26.0 172 44-222 44-220 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1.8E-30 6.1E-35 266.2 28.7 305 136-534 50-358 (597)
40 1xku_A Decorin; proteoglycan, 100.0 2.5E-29 8.4E-34 238.6 27.7 287 184-532 31-330 (330)
41 3oja_B Anopheles plasmodium-re 100.0 1.5E-29 5.2E-34 259.2 25.6 304 44-440 50-358 (597)
42 1xku_A Decorin; proteoglycan, 100.0 3.6E-29 1.2E-33 237.5 25.9 280 10-309 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-29 6.5E-34 239.5 23.5 286 184-532 33-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 5E-31 1.7E-35 263.0 11.4 289 9-309 3-352 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-32 4.7E-37 274.2 -0.5 368 91-534 3-440 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-29 1.8E-33 236.5 23.5 190 115-310 34-229 (332)
47 3ogk_B Coronatine-insensitive 100.0 1.1E-29 3.9E-34 261.5 6.8 257 49-306 54-350 (592)
48 3g06_A SSPH2 (leucine-rich rep 100.0 2.1E-26 7.2E-31 233.3 27.9 260 9-313 40-299 (622)
49 3ogk_B Coronatine-insensitive 100.0 1.9E-29 6.6E-34 259.8 4.0 426 71-531 53-548 (592)
50 3g06_A SSPH2 (leucine-rich rep 99.9 7.9E-26 2.7E-30 229.1 29.2 258 185-512 41-298 (622)
51 2z66_A Variable lymphocyte rec 99.9 5E-26 1.7E-30 213.5 20.7 240 12-266 10-261 (306)
52 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-26 4E-31 217.7 16.1 241 45-286 50-302 (313)
53 2z80_A TOLL-like receptor 2, v 99.9 2.5E-26 8.6E-31 220.0 18.6 264 11-311 33-314 (353)
54 1ogq_A PGIP-2, polygalacturona 99.9 3E-26 1E-30 215.0 16.0 241 68-310 50-303 (313)
55 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.6E-30 212.4 19.3 223 44-267 80-315 (328)
56 2p1m_B Transport inhibitor res 99.9 2.4E-28 8E-33 251.8 1.2 152 356-508 371-541 (594)
57 2z80_A TOLL-like receptor 2, v 99.9 6.6E-26 2.2E-30 217.1 17.6 272 184-535 31-315 (353)
58 4fcg_A Uncharacterized protein 99.9 6.7E-26 2.3E-30 213.7 16.3 224 9-245 81-316 (328)
59 2z66_A Variable lymphocyte rec 99.9 1.5E-25 5.1E-30 210.3 17.3 221 47-269 9-239 (306)
60 2p1m_B Transport inhibitor res 99.9 3.1E-28 1.1E-32 250.9 -3.4 429 47-532 45-542 (594)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-25 5.8E-30 207.5 15.2 217 12-266 14-238 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 2E-24 6.9E-29 213.1 23.4 239 11-266 45-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 3E-24 1E-28 212.6 23.1 239 11-266 56-303 (452)
64 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-24 5.9E-29 200.7 19.8 219 46-289 12-239 (285)
65 1wwl_A Monocyte differentiatio 99.9 1.5E-25 5E-30 210.4 12.0 238 10-266 44-309 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 8.5E-25 2.9E-29 205.7 16.3 236 11-266 12-250 (317)
67 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4.2E-28 207.5 24.2 241 209-511 45-292 (440)
68 3zyi_A Leucine-rich repeat-con 99.9 1.4E-23 4.8E-28 207.8 23.1 241 209-511 56-303 (452)
69 1wwl_A Monocyte differentiatio 99.9 1E-25 3.6E-30 211.4 6.7 244 228-536 41-311 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-24 4.2E-29 204.6 11.4 254 46-307 11-271 (317)
71 2z62_A TOLL-like receptor 4, v 99.9 4.2E-23 1.4E-27 190.4 20.5 216 12-242 10-236 (276)
72 3oja_A Leucine-rich immune mol 99.9 1.2E-23 4E-28 209.2 13.3 234 228-529 32-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 5.5E-23 1.9E-27 204.4 17.8 229 21-266 19-250 (487)
74 2o6q_A Variable lymphocyte rec 99.9 7.2E-22 2.5E-26 181.2 22.8 133 379-511 84-218 (270)
75 1p9a_G Platelet glycoprotein I 99.9 2.5E-22 8.6E-27 185.6 19.4 201 250-511 7-208 (290)
76 1p9a_G Platelet glycoprotein I 99.9 4.4E-22 1.5E-26 184.0 19.8 196 9-243 10-208 (290)
77 2z62_A TOLL-like receptor 4, v 99.9 2.1E-22 7.2E-27 185.6 16.9 156 379-534 75-237 (276)
78 2o6q_A Variable lymphocyte rec 99.9 2E-21 6.8E-26 178.2 20.1 181 355-535 35-219 (270)
79 1h6u_A Internalin H; cell adhe 99.9 8.8E-22 3E-26 183.9 18.0 193 44-268 40-232 (308)
80 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.2E-26 180.6 20.9 198 6-225 38-235 (308)
81 3rfs_A Internalin B, repeat mo 99.9 1.2E-21 4.1E-26 179.8 15.7 139 377-521 106-246 (272)
82 2xwt_C Thyrotropin receptor; s 99.9 8.7E-22 3E-26 177.2 14.4 195 46-263 32-236 (239)
83 3m19_A Variable lymphocyte rec 99.9 7.9E-21 2.7E-25 172.2 19.8 177 358-536 15-194 (251)
84 2xwt_C Thyrotropin receptor; s 99.9 1.2E-21 3.9E-26 176.4 13.9 201 57-285 23-236 (239)
85 3rfs_A Internalin B, repeat mo 99.9 1.4E-20 4.6E-25 172.8 20.8 179 357-537 41-221 (272)
86 4glp_A Monocyte differentiatio 99.8 2.8E-21 9.6E-26 181.1 11.8 226 253-536 64-309 (310)
87 2ca6_A RAN GTPase-activating p 99.8 1.2E-21 4.1E-26 189.9 7.7 84 44-127 31-135 (386)
88 2ca6_A RAN GTPase-activating p 99.8 2E-21 6.9E-26 188.3 9.3 240 2-269 25-319 (386)
89 3goz_A Leucine-rich repeat-con 99.8 3.9E-21 1.3E-25 184.3 9.1 244 13-268 2-299 (362)
90 3goz_A Leucine-rich repeat-con 99.8 3.3E-21 1.1E-25 184.8 8.0 131 381-511 139-297 (362)
91 2ast_B S-phase kinase-associat 99.8 1.6E-20 5.5E-25 178.6 11.6 240 47-289 49-307 (336)
92 1h6t_A Internalin B; cell adhe 99.8 8.2E-20 2.8E-24 168.9 15.2 174 357-540 46-219 (291)
93 4glp_A Monocyte differentiatio 99.8 6.6E-20 2.3E-24 171.8 14.5 196 68-266 91-307 (310)
94 3m19_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 160.2 18.0 160 380-541 14-175 (251)
95 4ay9_X Follicle-stimulating ho 99.8 3.1E-19 1.1E-23 170.1 16.0 233 12-263 12-256 (350)
96 3e6j_A Variable lymphocyte rec 99.8 8.9E-19 3E-23 155.9 17.3 153 381-535 20-173 (229)
97 3cvr_A Invasion plasmid antige 99.8 8.3E-19 2.8E-23 175.5 19.0 185 46-251 60-252 (571)
98 1h6t_A Internalin B; cell adhe 99.8 7.9E-19 2.7E-23 162.3 16.9 169 44-220 45-213 (291)
99 1xeu_A Internalin C; cellular 99.8 2.3E-19 7.9E-24 163.2 12.3 172 358-540 20-191 (263)
100 2ast_B S-phase kinase-associat 99.8 1.6E-19 5.5E-24 171.7 11.3 247 9-271 47-311 (336)
101 3cvr_A Invasion plasmid antige 99.8 1.1E-18 3.6E-23 174.7 17.5 180 68-268 59-245 (571)
102 2o6s_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 154.9 13.6 175 359-541 9-186 (208)
103 4ezg_A Putative uncharacterize 99.8 2.6E-19 8.8E-24 155.6 10.7 154 377-535 41-195 (197)
104 1m9s_A Internalin B; cell inva 99.8 2.1E-18 7.3E-23 174.6 17.6 174 357-540 43-216 (605)
105 2v9t_B SLIT homolog 2 protein 99.8 2.1E-18 7.2E-23 152.3 15.2 151 359-511 13-165 (220)
106 2xot_A Amphoterin-induced prot 99.8 9.3E-19 3.2E-23 167.5 12.6 175 358-534 19-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-18 8.1E-23 152.0 13.8 151 359-511 13-166 (220)
108 4ay9_X Follicle-stimulating ho 99.8 6.8E-18 2.3E-22 160.8 17.0 211 48-262 12-232 (350)
109 2o6s_A Variable lymphocyte rec 99.8 2.3E-17 7.8E-22 144.8 17.8 155 382-538 9-165 (208)
110 2v9t_B SLIT homolog 2 protein 99.8 6.9E-18 2.4E-22 149.0 14.6 151 382-534 13-165 (220)
111 1m9s_A Internalin B; cell inva 99.8 1.1E-17 3.8E-22 169.4 16.7 172 44-223 42-213 (605)
112 1xeu_A Internalin C; cellular 99.8 7.1E-18 2.4E-22 153.3 13.4 168 47-223 21-188 (263)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-17 4.1E-22 147.5 14.1 151 382-534 13-166 (220)
114 4fs7_A Uncharacterized protein 99.7 1.4E-16 4.9E-21 154.3 20.4 200 57-263 59-263 (394)
115 2xot_A Amphoterin-induced prot 99.7 1.5E-17 5E-22 159.1 13.1 156 382-539 20-181 (361)
116 4fs7_A Uncharacterized protein 99.7 2E-16 6.9E-21 153.2 21.2 64 81-146 60-126 (394)
117 3e6j_A Variable lymphocyte rec 99.7 6.6E-17 2.2E-21 143.8 15.7 153 357-512 19-173 (229)
118 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.7E-22 144.6 10.2 151 357-512 44-195 (197)
119 3sb4_A Hypothetical leucine ri 99.7 1.5E-16 5.1E-21 150.2 14.4 101 402-504 225-327 (329)
120 1dce_A Protein (RAB geranylger 99.7 8.9E-19 3E-23 176.4 -1.3 200 42-259 346-566 (567)
121 2ell_A Acidic leucine-rich nuc 99.7 4.8E-17 1.6E-21 137.4 8.4 134 403-539 24-165 (168)
122 3sb4_A Hypothetical leucine ri 99.7 1.4E-16 4.6E-21 150.5 10.5 124 402-528 201-328 (329)
123 1dce_A Protein (RAB geranylger 99.7 4.7E-18 1.6E-22 171.1 0.5 178 8-200 348-549 (567)
124 4fdw_A Leucine rich hypothetic 99.7 1.2E-14 4.2E-19 139.8 22.0 127 381-511 249-383 (401)
125 2ell_A Acidic leucine-rich nuc 99.6 3E-16 1E-20 132.5 8.7 135 380-516 24-165 (168)
126 4fdw_A Leucine rich hypothetic 99.6 9.1E-15 3.1E-19 140.7 19.5 259 228-533 111-382 (401)
127 4gt6_A Cell surface protein; l 99.6 3.8E-14 1.3E-18 137.2 22.8 131 397-533 259-390 (394)
128 2wfh_A SLIT homolog 2 protein 99.6 4.2E-15 1.4E-19 128.0 13.6 127 360-488 13-139 (193)
129 4gt6_A Cell surface protein; l 99.6 5.1E-14 1.7E-18 136.4 22.5 127 378-509 263-389 (394)
130 2je0_A Acidic leucine-rich nuc 99.6 5.6E-16 1.9E-20 127.9 7.4 126 403-530 17-149 (149)
131 1a9n_A U2A', U2A'; complex (nu 99.6 4.7E-16 1.6E-20 132.2 6.9 129 401-533 17-152 (176)
132 2wfh_A SLIT homolog 2 protein 99.6 7.5E-15 2.6E-19 126.4 14.3 127 382-511 12-139 (193)
133 2je0_A Acidic leucine-rich nuc 99.6 1.9E-15 6.4E-20 124.7 8.9 124 44-168 16-148 (149)
134 1w8a_A SLIT protein; signaling 99.6 5.5E-15 1.9E-19 127.4 12.3 128 359-488 10-139 (192)
135 1w8a_A SLIT protein; signaling 99.6 5.5E-15 1.9E-19 127.4 12.1 128 382-511 10-139 (192)
136 1a9n_A U2A', U2A'; complex (nu 99.6 1.3E-15 4.4E-20 129.5 7.5 135 39-174 13-154 (176)
137 2o6r_A Variable lymphocyte rec 99.6 2.2E-14 7.7E-19 122.0 14.6 127 383-511 10-137 (177)
138 4b8c_D Glucose-repressible alc 99.6 1.2E-15 4.1E-20 158.6 7.5 196 9-217 173-369 (727)
139 2o6r_A Variable lymphocyte rec 99.6 6.7E-14 2.3E-18 119.0 15.2 130 404-536 8-139 (177)
140 4b8c_D Glucose-repressible alc 99.5 1.4E-14 4.8E-19 150.6 7.4 180 357-539 173-360 (727)
141 1ds9_A Outer arm dynein; leuci 99.5 2.9E-15 9.8E-20 130.1 -1.0 127 46-174 24-154 (198)
142 4h09_A Hypothetical leucine ri 99.5 7.4E-12 2.5E-16 120.6 22.8 104 378-484 238-342 (379)
143 4h09_A Hypothetical leucine ri 99.4 9.7E-12 3.3E-16 119.8 21.5 313 154-523 40-358 (379)
144 1ds9_A Outer arm dynein; leuci 99.4 3.2E-15 1.1E-19 129.7 -2.9 146 6-166 15-180 (198)
145 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.3E-17 110.0 11.9 106 381-488 10-115 (170)
146 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.9E-17 109.4 12.3 107 383-491 15-121 (174)
147 2r9u_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 108.3 12.4 105 406-513 15-120 (174)
148 3g39_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 107.3 12.3 105 405-512 11-116 (170)
149 3un9_A NLR family member X1; l 99.4 5.2E-14 1.8E-18 134.0 -0.5 181 354-534 69-283 (372)
150 3un9_A NLR family member X1; l 99.3 8E-14 2.7E-18 132.8 -0.4 158 379-536 71-254 (372)
151 2ifg_A High affinity nerve gro 99.1 2.6E-10 9E-15 108.3 10.4 101 386-488 14-116 (347)
152 2ifg_A High affinity nerve gro 99.0 4.8E-10 1.7E-14 106.5 9.7 105 406-512 11-117 (347)
153 2ra8_A Uncharacterized protein 99.0 3.9E-10 1.3E-14 106.3 5.7 157 376-535 135-321 (362)
154 1io0_A Tropomodulin; LRR prote 98.8 3.2E-09 1.1E-13 90.2 5.6 107 44-150 35-164 (185)
155 1io0_A Tropomodulin; LRR prote 98.8 5.7E-09 2E-13 88.7 6.7 116 59-174 27-165 (185)
156 2ra8_A Uncharacterized protein 98.8 1.3E-08 4.4E-13 95.9 9.1 38 206-243 278-320 (362)
157 3e4g_A ATP synthase subunit S, 98.5 1.3E-08 4.3E-13 83.8 -1.1 36 403-438 61-96 (176)
158 3e4g_A ATP synthase subunit S, 98.3 1.6E-07 5.5E-12 77.3 1.9 84 379-462 60-150 (176)
159 1pgv_A TMD-1, tropomodulin TMD 98.1 1.7E-06 5.9E-11 72.6 4.8 106 44-149 40-169 (197)
160 3rw6_A Nuclear RNA export fact 98.1 1.3E-06 4.4E-11 77.9 4.1 78 88-166 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 6.1E-06 2.1E-10 69.3 6.1 114 59-172 32-169 (197)
162 3rw6_A Nuclear RNA export fact 98.0 6.3E-06 2.2E-10 73.4 6.0 94 50-144 148-258 (267)
163 3rfe_A Platelet glycoprotein I 97.4 0.00018 6.1E-09 56.4 5.1 55 12-81 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0013 4.6E-08 51.4 5.8 56 454-511 11-68 (130)
165 2lz0_A Uncharacterized protein 93.2 0.16 5.4E-06 37.2 5.4 46 414-460 7-52 (100)
166 2lz0_A Uncharacterized protein 92.0 0.25 8.5E-06 36.1 5.1 50 435-485 4-53 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-49 Score=408.24 Aligned_cols=473 Identities=20% Similarity=0.257 Sum_probs=385.0
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCccc-chhhh
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~ 88 (543)
-++++|++.+++++|..+. +.+++|++++|.++.+ +..|+++++|++|++++|.+..+ |.+|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP---------------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred CceEECCCCCcccCcCCCC---------------CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence 3579999999999998884 4589999999999988 56899999999999999998866 66899
Q ss_pred ccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcccc-cccccCCCCCCEEEccCCcCccCC-cccccCCCccEE
Q 009119 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL 165 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L 165 (543)
++++|++|++++|.+..+ |..+.++++|++|++++|.++.+ +..+.++++|++|++++|.+..++ ..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 999999999999998854 67899999999999999999977 577889999999999999998752 345559999999
Q ss_pred EecCCcccccchhhhccccccc--EEECCCCcCCcCchhccCCC------------------------------------
Q 009119 166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLS------------------------------------ 207 (543)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~------------------------------------ 207 (543)
++++|.+..+....+..+++|+ ++++++|.+..++.......
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 9999999988888899999999 88999998876554332222
Q ss_pred ----------------cccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccch
Q 009119 208 ----------------RLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270 (543)
Q Consensus 208 ----------------~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~ 270 (543)
+++.+++++|.+..++. .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+..
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence 56677777777776654 3777888888888888888888888888888888888888876644
Q ss_pred hhh--cceecEEEccCCCCCC-CCh-hhcCCCCCceeecCCCCcCccc--ccccCCCcHHHHHHHhccCCCCcccccccc
Q 009119 271 EAC--QLRLSVLDLSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (543)
Q Consensus 271 ~~~--~~~L~~L~l~~~~i~~-~~~-~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (543)
..+ ...|++|++++|.+.. ++. .+..+++|++|++++|.+.... ...+
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------- 372 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-------------------------- 372 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--------------------------
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--------------------------
Confidence 332 2348888888887764 443 3778888888888888776543 1111
Q ss_pred hhhHHHhhhhcccccceeeeCCCCCCCC-ChhhhccCCccEEEcCCCcCccC-C-hhhccCCCCceeecccCcCCCCCHH
Q 009119 345 KEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQEL-P-PELSSCASLQTLILSRNKIKDWPDA 421 (543)
Q Consensus 345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~-~~~~~~~~L~~L~l~~~~i~~~~~~ 421 (543)
...++++++++++|.+..+ +..+..+++|++|++++|.++.. + ..+..+++|+.|++++|.++...+.
T Consensus 373 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 373 ---------RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp ---------TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred ---------ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 1236789999999988754 55677789999999999998764 3 3478899999999999999988888
Q ss_pred HhhCCCCCCEEEcCCCCCccc---CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCcccc-Cchhhhcc
Q 009119 422 ILTSLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRL 497 (543)
Q Consensus 422 ~l~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~ 497 (543)
.+.++++|++|++++|++.+. ....+..+++|++|++++|.+....+.+|..+++|++|++++|+++. .|..+..+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 888999999999999998762 22458889999999999999988888889999999999999999884 45678889
Q ss_pred CCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCC
Q 009119 498 QQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 498 ~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~ 534 (543)
+.| .|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 999 999999999877 566888999999999999886
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-50 Score=415.61 Aligned_cols=472 Identities=21% Similarity=0.219 Sum_probs=376.3
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~ 89 (543)
++++|++++++++|.++. +++++|++++|.+..++ ..|+++++|++|++++|.+..+ |.+|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~ 78 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78 (606)
T ss_dssp TEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc
Confidence 579999999999998874 46999999999999886 4899999999999999999977 558999
Q ss_pred cCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCc--cCCcccccCCCccEE
Q 009119 90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSKL 165 (543)
Q Consensus 90 ~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~i~~~~~~~~~L~~L 165 (543)
+++|++|++++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+. .+|..+..+++|++|
T Consensus 79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 99999999999999876 778999999999999999998776 67899999999999999998 478889999999999
Q ss_pred EecCCcccccchhhhccccccc----EEECCCCcCCcCchhccCCCcccEEEccCCccc--cCCC---------------
Q 009119 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS--------------- 224 (543)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~--------------- 224 (543)
++++|.+..+....++.+.+|+ ++++++|.+..++.......+|+.|++++|.+. ..+.
T Consensus 159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp ECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred EccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 9999999988777677776655 899999999888776656668999999888653 1111
Q ss_pred -----------------------------------------CCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119 225 -----------------------------------------SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (543)
Q Consensus 225 -----------------------------------------~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 263 (543)
.+..+++|+.++++++.+..+| .+..+++|++|++++|
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC 317 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC
T ss_pred cccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccc
Confidence 1344566666666666666665 5666666777777666
Q ss_pred cccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccccc
Q 009119 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343 (543)
Q Consensus 264 ~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (543)
.+..++.. ....|+++++++|..... ..+..+++|++|++++|.+.....
T Consensus 318 ~l~~lp~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~---------------------------- 367 (606)
T 3vq2_A 318 QLKQFPTL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGC---------------------------- 367 (606)
T ss_dssp CCSSCCCC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEE----------------------------
T ss_pred cCcccccC-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcc----------------------------
Confidence 66655533 333466677666633321 134566667777777666543310
Q ss_pred chhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHH
Q 009119 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDA 421 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~ 421 (543)
........+.++++++++|.+..++..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+++..+.
T Consensus 368 -----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 368 -----CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp -----CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred -----hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 001112346788999999988888877888899999999999888754 3678889999999999998888777
Q ss_pred HhhCCCCCCEEEcCCCCCcc-cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCC
Q 009119 422 ILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQ 499 (543)
Q Consensus 422 ~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~ 499 (543)
.+.++++|++|++++|.+.+ .....+..+++|++|++++|.+....+..+..+++|++|++++|+++.+ |..+..+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 78889999999999998886 4556688899999999999998888778888999999999999988865 677888899
Q ss_pred CcEEeCCCCccccccccccCCC-CCCeEeCCCCcCC
Q 009119 500 LRILDLSQNSLQSIPEGFKNLT-SLTELDLSDNNIS 534 (543)
Q Consensus 500 L~~L~l~~~~l~~l~~~l~~~~-~L~~L~l~~~~~~ 534 (543)
|++|++++|+++.+|..+..++ +|+.|++++|++.
T Consensus 523 L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 9999999999998887788887 5999999999887
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-49 Score=419.93 Aligned_cols=509 Identities=29% Similarity=0.328 Sum_probs=329.8
Q ss_pred HHHHHhhcCeeecCCCccc-ccchhhhhcccccCCCCccccccCccEEEcCccccccch-HH---hcCCCCCCEEEcCCC
Q 009119 4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-ED---LRNLPLLTVLNVSHN 78 (543)
Q Consensus 4 ~~~~~~~~~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~---~~~~~~L~~L~l~~~ 78 (543)
.+...+++++|+++++.+. .+|...+.. +++|++|++++|.+.... .. +.++++|++|++++|
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLK------------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCC------------CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhcc------------CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 4566788999999999887 444443232 566777777777776443 33 667777777777777
Q ss_pred cCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCcCccCCcccc
Q 009119 79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLA 157 (543)
Q Consensus 79 ~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~ 157 (543)
.+.... .+..+++|++|++++|.+....+.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.......
T Consensus 189 ~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~- 266 (768)
T 3rgz_A 189 KISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 266 (768)
T ss_dssp EEESCC-BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-
T ss_pred cccccC-CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-
Confidence 665332 225666777777777766643333666677777777776666 44556666666666666666665322122
Q ss_pred cCCCccEEEecCCccc-ccchhhhcccccccEEECCCCcCC-cCchhccCCCcccEEEccCCccc-cCCCC-CcCCCCCc
Q 009119 158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSS-ISGCCSLA 233 (543)
Q Consensus 158 ~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~-~~~~~~L~ 233 (543)
.+++|++|++++|.+. .++......+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 5566666666666555 333322222355666666666554 44555555666666666666555 44433 45556666
Q ss_pred EEEcCCCCCC-CCCccccCCC-CCCEEeCCCCcccc-cchhhh---cceecEEEccCCCCCC-CChhhcCCCCCceeecC
Q 009119 234 EFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKE-YCVEAC---QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLT 306 (543)
Q Consensus 234 ~l~l~~~~l~-~l~~~l~~~~-~L~~L~l~~n~l~~-~~~~~~---~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~ 306 (543)
+|++++|.+. .+|..+..++ +|++|++++|.+.. ++.... ...|++|++++|.+++ +|..+.++++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 6666666555 4555555554 55555555555542 111111 1235555555555553 44555555555555555
Q ss_pred CCCcCcccccccCCCcHHHHHHHhc-cCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCChhhhccCCccE
Q 009119 307 GNPLRTLRSSLVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITK 384 (543)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~ 384 (543)
+|.+.......+.... .+.. .+....... . ........++++++++++|.+. .+|..+..+++|++
T Consensus 427 ~N~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~--~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEG--E-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp SSEEESCCCGGGGGCT-----TCCEEECCSSCCCS--C-----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCcccCcccHHHhcCC-----CCCEEECCCCcccC--c-----CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 5554422211111000 0000 000000000 0 0011123467889999999888 67888888899999
Q ss_pred EEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcc-cCC------------------
Q 009119 385 LDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPS------------------ 444 (543)
Q Consensus 385 L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~------------------ 444 (543)
|++++|.++. +|.++..+++|++|++++|++++..+..+.++++|+.|++++|++.+ ++.
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 9999999884 78888899999999999999987777778899999999999987752 221
Q ss_pred ---------------------------------------------------CccCCCCCccEEEccCCcCCCCCCCCCCC
Q 009119 445 ---------------------------------------------------DGFKDIPMLQILDLSYNIASLPENPPFSS 473 (543)
Q Consensus 445 ---------------------------------------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 473 (543)
..+..+++|+.||+++|.+++..+..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 12344678999999999999888999999
Q ss_pred CCcCceeecCCCccc-cCchhhhccCCCcEEeCCCCccc-cccccccCCCCCCeEeCCCCcCC-cCCC
Q 009119 474 LPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPP 538 (543)
Q Consensus 474 ~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~ 538 (543)
+++|+.|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999998 78999999999999999999998 66999999999999999999987 5664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.6e-50 Score=421.42 Aligned_cols=510 Identities=26% Similarity=0.326 Sum_probs=413.0
Q ss_pred HHHHhhcCeeecCCCccc-ccch--hhhhcccccCCCCccccccCccEEEcCccccc-cchHH-hcCCCCCCEEEcCCCc
Q 009119 5 LKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNK 79 (543)
Q Consensus 5 ~~~~~~~~~l~l~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~l~~~~ 79 (543)
+...+.+++||++++.+. .+|. .+ ..+++|++|++++|.+. .++.. +.++++|++|++++|.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSL-------------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGG-------------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHH-------------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 345678999999999988 4554 33 23789999999999887 34444 4899999999999999
Q ss_pred Cccc-chh---hhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCc-cCCc
Q 009119 80 LSEL-PAA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPE 154 (543)
Q Consensus 80 l~~~-~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~i~~ 154 (543)
+... +.. +.++++|++|++++|.+..... +..+++|++|++++|.+...+..+.++++|++|++++|.+. .++.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 9855 334 7899999999999999885433 37899999999999999865445999999999999999998 5678
Q ss_pred ccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCC-cCchhccCC-CcccEEEccCCccc-cCCCCCcCCCC
Q 009119 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCS 231 (543)
Q Consensus 155 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~~~~~~~~~~~ 231 (543)
.+..+++|++|++++|.+...... ..+++|++|++++|.+. .+|..+... ++|+.|++++|.+. .+|..+..+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 899999999999999988744332 27889999999999996 778777664 99999999999988 67788999999
Q ss_pred CcEEEcCCCCCC-CCCcc-ccCCCCCCEEeCCCCccc-ccchhhhc--ceecEEEccCCCCCC-CChhhcC--CCCCcee
Q 009119 232 LAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGK--MTTLRKL 303 (543)
Q Consensus 232 L~~l~l~~~~l~-~l~~~-l~~~~~L~~L~l~~n~l~-~~~~~~~~--~~L~~L~l~~~~i~~-~~~~l~~--~~~L~~L 303 (543)
|++|++++|.+. .+|.. +..+++|++|++++|.+. .++..... ..|++|++++|.+.+ ++..+.. +++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 999999999998 78865 899999999999999987 45544433 269999999999886 6666665 7899999
Q ss_pred ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCChhhhccCCc
Q 009119 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEI 382 (543)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L 382 (543)
++++|.+.......+.... .+...+..... ............++++.+++++|.+. .+|..+..+++|
T Consensus 400 ~L~~n~l~~~~p~~l~~l~---------~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCS---------ELVSLHLSFNY--LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp ECCSSEEEEECCGGGGGCT---------TCCEEECCSSE--EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred ECCCCccccccCHHHhcCC---------CCCEEECcCCc--ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 9999988743322221100 01110000000 00001111223468999999999988 788889999999
Q ss_pred cEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119 383 TKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (543)
Q Consensus 383 ~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 461 (543)
++|++++|.++. +|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.....+..+++|+.|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 999999999985 7888999999999999999999888888899999999999999999766677999999999999999
Q ss_pred cCCCCCC----------------------------------------------------------------------CCC
Q 009119 462 IASLPEN----------------------------------------------------------------------PPF 471 (543)
Q Consensus 462 ~~~~~~~----------------------------------------------------------------------~~~ 471 (543)
.+.+..+ ..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 7653222 134
Q ss_pred CCCCcCceeecCCCccc-cCchhhhccCCCcEEeCCCCccc-cccccccCCCCCCeEeCCCCcCC-cCCCCcC
Q 009119 472 SSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELV 541 (543)
Q Consensus 472 ~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~~~~ 541 (543)
..+++|++|++++|+++ .+|..+..++.|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|+.+.
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 55688999999999998 78999999999999999999998 67999999999999999999999 6776654
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-47 Score=400.05 Aligned_cols=504 Identities=23% Similarity=0.304 Sum_probs=275.8
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~ 89 (543)
+.+||++++++++|..+. +++++|++++|.+..++ ..|+++++|++|++++|.+..+ |.+|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 71 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71 (680)
T ss_dssp SEEECCSSCCSSCCSCSC---------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH
T ss_pred CeeECCCCCccccccccC---------------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc
Confidence 467888888888887663 34666666666666554 3566666666666666666644 446666
Q ss_pred cCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccC-CcccccCCCccEEE
Q 009119 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD 166 (543)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~ 166 (543)
+++|++|++++|.+..+|. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.+... +..+..+++|++|+
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 6666666666666666654 4666666666666666666554 4566666666666666666543 34455666666666
Q ss_pred ecCCcccccchhhhc--ccccccEEECCCCcCCcCch-hccCC---------------------------CcccEEEccC
Q 009119 167 VEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMPE-TIGSL---------------------------SRLIRLDLHQ 216 (543)
Q Consensus 167 l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~l~~~---------------------------~~L~~L~l~~ 216 (543)
+++|.+..+....+. .+++|++|++++|.+..++. .+..+ ++|+.|++++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 666666655544333 23556666666665544322 22221 3344455555
Q ss_pred CccccC-CCCCcCCCC--CcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhc------------------
Q 009119 217 NRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ------------------ 274 (543)
Q Consensus 217 ~~~~~~-~~~~~~~~~--L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~------------------ 274 (543)
|.+..+ +..+..++. |++|++++|.+..+ +.++..+++|++|++++|.+..+....+.
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence 544422 233443332 66666666555533 23455555566666655555543332211
Q ss_pred -----------------ceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcC--cccccccCCCcHHHHHHHhccCC
Q 009119 275 -----------------LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR--TLRSSLVNGPTPALLKYLRSRLP 334 (543)
Q Consensus 275 -----------------~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 334 (543)
..|+++++++|.+.++ +..+..+++|++|++++|.+. .++...+..... ..+.
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~-------~~L~ 384 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-------SPLH 384 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT-------SCCC
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc-------CcCc
Confidence 2245555555544443 223444555555555544321 111110000000 0000
Q ss_pred CCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCC-hhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecc
Q 009119 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIP-SEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILS 411 (543)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~ 411 (543)
...... ..............++++.+++++|.+. .++ ..+..+++|++|++++|.+..+ +..+..+++|+.|+++
T Consensus 385 ~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 385 ILNLTK--NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp EEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred eEECCC--CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 000000 0000000011122345555566555554 233 3444555666666666655543 3345556666666666
Q ss_pred cCcCC--CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCC--------CCCCCCCcCceee
Q 009119 412 RNKIK--DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN--------PPFSSLPHLQELY 481 (543)
Q Consensus 412 ~~~i~--~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L~ 481 (543)
+|.++ +..+..+.++++|+.|++++|+++.++..+|..+++|++|++++|.+..... ..+..+++|++|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 66554 2333445667777777777777777666667777777777777776654311 2256677777777
Q ss_pred cCCCccccCchh-hhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCCcCCcCCCC
Q 009119 482 LRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPE 539 (543)
Q Consensus 482 l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~ 539 (543)
+++|+++.+|.. +..+++|+.|++++|+++.+|. .+..+++|+.|++++|+++.+++.
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 777777766653 5667777777777777777643 356777777777777777766654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-49 Score=408.33 Aligned_cols=452 Identities=21% Similarity=0.231 Sum_probs=381.9
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCccc-chh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA 86 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~ 86 (543)
+.+++|+++++.++.++...+.. +++|++|++++|.+..+ +..|.++++|++|++++|.+..+ |.+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 67899999999999998866655 77899999999999987 46899999999999999999877 778
Q ss_pred hhccCCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCcc--cccccccCCCCCCEEEccCCcCccC-CcccccCCCc
Q 009119 87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKM 162 (543)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L 162 (543)
|+++++|++|++++|.+..++ ..++++++|++|++++|.+. .+|..+.++++|++|++++|.+..+ +..+..+.+|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 999999999999999998765 67889999999999999988 4788899999999999999998865 3445555544
Q ss_pred ----cEEEecCCcccccchhhhcccccccEEECCCCcCC-----------------------------------------
Q 009119 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN----------------------------------------- 197 (543)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~----------------------------------------- 197 (543)
..+++++|.+..+....+... +|+++++++|.+.
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 478888888887777766554 7888888777542
Q ss_pred -----------------cCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeC
Q 009119 198 -----------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 260 (543)
Q Consensus 198 -----------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l 260 (543)
.....+..+++|+.|+++++.+..+| .+..+++|+++++++|.+..+|. + .+++|++|++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l 335 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTL 335 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccccc-C-CCCccceeec
Confidence 01112456788999999999999888 88899999999999999998984 4 9999999999
Q ss_pred CCCcccccchhhhcceecEEEccCCCCCCC---ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCc
Q 009119 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337 (543)
Q Consensus 261 ~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (543)
++|.............|++|++++|.++.. +..+..+++|++|++++|.+..++. .+.
T Consensus 336 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~------------------ 396 (606)
T 3vq2_A 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFM------------------ 396 (606)
T ss_dssp ESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC-CCT------------------
T ss_pred cCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh-hcc------------------
Confidence 999544322333345699999999998875 7789999999999999999876652 111
Q ss_pred ccccccchhhHHHhhhhcccccceeeeCCCCCCCCC--hhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCc
Q 009119 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNK 414 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~ 414 (543)
..++++.+++++|.+...+ ..+..+++|++|++++|.++. .|..+..+++|++|++++|.
T Consensus 397 -----------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 397 -----------------GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp -----------------TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred -----------------CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 1367899999999988664 367789999999999999987 57778999999999999999
Q ss_pred CCC-CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh
Q 009119 415 IKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD 493 (543)
Q Consensus 415 i~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 493 (543)
+++ ..+..+..+++|++|++++|+++++....|..+++|++|++++|.+....+..+..+++|++|++++|+++.+|..
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 987 4566688999999999999999998888899999999999999999998888899999999999999999999988
Q ss_pred hhccC-CCcEEeCCCCcccc
Q 009119 494 ILRLQ-QLRILDLSQNSLQS 512 (543)
Q Consensus 494 ~~~~~-~L~~L~l~~~~l~~ 512 (543)
+..++ +|++|++++|.+..
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCC
T ss_pred HhhhcccCcEEEccCCCccc
Confidence 88886 69999999999874
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-47 Score=396.62 Aligned_cols=492 Identities=23% Similarity=0.252 Sum_probs=306.2
Q ss_pred hhcCeeecCCCcccccchhhhhcccccC------------CCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEc
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAG------------EGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNV 75 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l 75 (543)
+.+++|++++++++.+|...+..+..+. ..+.|..+++|++|++++|.+..++. .|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4677788888888877776655522211 01122234444444444444444442 3444444444544
Q ss_pred CCCcCcccc-hhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcccccc-cc--cCCCCCCEEEccCCcCc
Q 009119 76 SHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SL--GRCLNLSDFKASNNCIT 150 (543)
Q Consensus 76 ~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~--~~~~~L~~L~l~~~~~~ 150 (543)
++|.+..++ .+|+++++|++|++++|.+... +..+.++++|++|++++|.++.++. .+ ..+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 444444443 2444444444554444444422 2234444444444444444443321 11 12344444444444443
Q ss_pred cCC-cccccC---------------------------CCccEEEecCCcccccchhhhccccc--ccEEECCCCcCCcCc
Q 009119 151 SLP-EDLADC---------------------------SKMSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLNGMP 200 (543)
Q Consensus 151 ~i~-~~~~~~---------------------------~~L~~L~l~~~~i~~~~~~~~~~~~~--L~~L~l~~~~~~~~~ 200 (543)
.++ ..+..+ ++|+.|++++|.+..+....+..++. |++|++++|.+..++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 221 111111 23344444444444333334444433 777777777776543
Q ss_pred -hhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCC------CCCc----cccCCCCCCEEeCCCCccccc
Q 009119 201 -ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS------ALPA----ELGKLSKLGTLDLHSNQLKEY 268 (543)
Q Consensus 201 -~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~------~l~~----~l~~~~~L~~L~l~~n~l~~~ 268 (543)
..+..+++|+.|++++|.+..+ +..+..+++|+.++++++... .+|. .+..+++|++|++++|.+..+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 4567777777777777766643 334555555555555543222 1221 334444455555544444433
Q ss_pred chhhhc------------------------------ceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcCc-cccc
Q 009119 269 CVEACQ------------------------------LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT-LRSS 316 (543)
Q Consensus 269 ~~~~~~------------------------------~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~~-~~~~ 316 (543)
....+. ..++.+++++|.++.+ +..+..+++|+.|++++|.+.. ++..
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 332211 2355555555555552 3445556666666666665532 2111
Q ss_pred ccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCC-ChhhhccCCccEEEcCCCcCcc-
Q 009119 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE- 394 (543)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~- 394 (543)
.+ ...++++++++++|.+..+ +..+..+++|+.|++++|.++.
T Consensus 425 ~~-----------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 425 EW-----------------------------------RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp GG-----------------------------------TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred cc-----------------------------------cCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 11 2246789999999998754 4456678999999999998763
Q ss_pred --CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCC--------ccCCCCCccEEEccCCcCC
Q 009119 395 --LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD--------GFKDIPMLQILDLSYNIAS 464 (543)
Q Consensus 395 --l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~L~l~~n~~~ 464 (543)
+|..+..+++|+.|++++|+++++.+..+.++++|++|++++|+++.+... .|..+++|++|++++|.+.
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 688899999999999999999999998899999999999999999876432 3788999999999999999
Q ss_pred CCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccccc-cccc-CCCCCCeEeCCCCcCCc
Q 009119 465 LPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP-EGFK-NLTSLTELDLSDNNISA 535 (543)
Q Consensus 465 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~-~~l~-~~~~L~~L~l~~~~~~~ 535 (543)
.+....|..+++|++|++++|+++.+|.. +..+++|+.|++++|+++.++ ..+. .+++|+.|++++|++..
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 87777899999999999999999988776 567999999999999999885 4466 78999999999999873
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-47 Score=390.19 Aligned_cols=474 Identities=22% Similarity=0.282 Sum_probs=393.7
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~ 88 (543)
.+.++|++.+++++|..+. +++++|++++|.++.++ ..|.++++|++|++++|.+..++ .+|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence 3579999999999998773 46999999999999885 58999999999999999999874 5799
Q ss_pred ccCCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCcc--CCcccccCCCccE
Q 009119 89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK 164 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~ 164 (543)
++++|++|++++|.+..++ ..+.++++|++|++++|.++.++. .+.++++|++|++++|.+.. +|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999998665 679999999999999999998875 68999999999999999985 6889999999999
Q ss_pred EEecCCcccccchhhhcccccc----cEEECCCCcCCcCchhccCCCcccEEEccCCccc--cCCC--------------
Q 009119 165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS-------------- 224 (543)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~-------------- 224 (543)
|++++|.+..+....+..+.+| +++++++|.+..++.......+|+.|+++++... .++.
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999998877778888888 8999999999877654444458999999887322 1111
Q ss_pred ----------------CCcCCC--CCcEEEcCCC-CCC-CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccC
Q 009119 225 ----------------SISGCC--SLAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284 (543)
Q Consensus 225 ----------------~~~~~~--~L~~l~l~~~-~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 284 (543)
.+..++ .++.+.+.++ .+. ..+..+..+++|++|++++|.+..++.......+++|++++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 313 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEES
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeecc
Confidence 111122 2334444444 222 45667788899999999999888777665555899999999
Q ss_pred CCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeee
Q 009119 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (543)
Q Consensus 285 ~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (543)
|.+..+|. ..+++|+.|++++|........ ...++++++++
T Consensus 314 n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-------------------------------------~~~~~L~~L~l 354 (570)
T 2z63_A 314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDL 354 (570)
T ss_dssp CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-------------------------------------CBCTTCCEEEC
T ss_pred CcccccCc--ccccccCEEeCcCCcccccccc-------------------------------------ccCCCCCEEeC
Confidence 99888776 5788999999999876432211 12367899999
Q ss_pred CCCCCCCC---ChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH-HHhhCCCCCCEEEcCCCCCc
Q 009119 365 EGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLR 440 (543)
Q Consensus 365 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~L~~n~l~ 440 (543)
+++.+... +..+..+++|++|++++|.++.++..+..+++|+.|++++|.+++..+ ..+.++++|++|++++|.+.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 99988755 577888999999999999999987778999999999999999987654 56789999999999999999
Q ss_pred ccCCCccCCCCCccEEEccCCcCC-CCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCcccccc-ccc
Q 009119 441 QVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGF 517 (543)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l~-~~l 517 (543)
......+..+++|++|++++|.+. ...+..+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.++ ..+
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 888888999999999999999986 34567789999999999999999976 778889999999999999999884 668
Q ss_pred cCCCCCCeEeCCCCcCC-cCCC
Q 009119 518 KNLTSLTELDLSDNNIS-ALPP 538 (543)
Q Consensus 518 ~~~~~L~~L~l~~~~~~-~~~~ 538 (543)
..+++|+.|++++|+++ +.|.
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred hcccCCcEEEecCCcccCCCcc
Confidence 99999999999999988 4443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6e-46 Score=383.72 Aligned_cols=457 Identities=22% Similarity=0.237 Sum_probs=344.2
Q ss_pred CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCC
Q 009119 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (543)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 123 (543)
.-+.+++++..++++|..+.. ++++|++++|.++.+ |.+|.++++|++|++++|.+..+ |.+|.++++|++|++++
T Consensus 13 ~~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 13 VNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 356899999999999987764 799999999999987 56899999999999999998855 67899999999999999
Q ss_pred CCcccc-cccccCCCCCCEEEccCCcCccC-CcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcC-c
Q 009119 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P 200 (543)
Q Consensus 124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~ 200 (543)
|.+..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.+..+ +
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 999865 67899999999999999999987 56789999999999999999987655577799999999999999876 4
Q ss_pred hhccCCCccc--EEEccCCccccCCCCCcCCCCCcEEE------------------------------------------
Q 009119 201 ETIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFY------------------------------------------ 236 (543)
Q Consensus 201 ~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~L~~l~------------------------------------------ 236 (543)
..+..+++|+ .|++++|.+..++........|+.++
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 5688899999 89999999886655444444444444
Q ss_pred ----------cCCCCCCCCCc-cccCCCCCCEEeCCCCcccccchhhhc-ceecEEEccCCCCCCC-ChhhcCCCCCcee
Q 009119 237 ----------MGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGL-PPEIGKMTTLRKL 303 (543)
Q Consensus 237 ----------l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L 303 (543)
+++|.+..++. .+..+++|++|++++|.++.++..... ..|++|++++|.+..+ +..+..+++|++|
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 44444443332 244455555555555555544433222 2255555555555543 3344555555555
Q ss_pred ecCCCCcC-cccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCC---Chhhhcc
Q 009119 304 LLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEA 379 (543)
Q Consensus 304 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~ 379 (543)
++++|.+. .++... ....+++++++++++.+..+ +..+..+
T Consensus 331 ~l~~n~~~~~~~~~~-----------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 331 SIKGNTKRLELGTGC-----------------------------------LENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp ECCSCSSCCBCCSST-----------------------------------TTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred ECCCCCcccccchhh-----------------------------------hhccCcCCEEECCCCccccccCcchhcccC
Confidence 55555433 111111 11236788888888887754 5567778
Q ss_pred CCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCCCCH-HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119 380 GEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (543)
Q Consensus 380 ~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 457 (543)
++|++|++++|.+..+ |..+..+++|+.|++++|.+++..+ ..+.++++|++|++++|.+.......+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 8888888888888774 5667888888888888888876543 3477888888888888888887777788888888888
Q ss_pred ccCCcCCCC---CCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCc
Q 009119 458 LSYNIASLP---ENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNN 532 (543)
Q Consensus 458 l~~n~~~~~---~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~ 532 (543)
+++|.+... ....+..+++|++|++++|.++.+ |..+..+++|+.|++++|+++.+ |+.+..+++| .|++++|+
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 888887652 234577888888999998888865 56678888899999999888865 6778888888 88999998
Q ss_pred CCcCCCCc
Q 009119 533 ISALPPEL 540 (543)
Q Consensus 533 ~~~~~~~~ 540 (543)
++.+++..
T Consensus 535 l~~~~~~~ 542 (606)
T 3t6q_A 535 ISIILPSL 542 (606)
T ss_dssp CCCCCGGG
T ss_pred ccccCHhh
Confidence 88877654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-45 Score=386.61 Aligned_cols=470 Identities=23% Similarity=0.268 Sum_probs=335.3
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCc-Cccc-chhhh
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG 88 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~-l~~~-~~~~~ 88 (543)
+.+||++++++.+|. + .+++++|+|++|.++.+ +..|+++++|++|++++|. +..+ |.+|.
T Consensus 7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence 478999999999998 5 45799999999999977 5789999999999999994 4466 66899
Q ss_pred ccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccc-cccc--ccCCCCCCEEEccCCcCccC--CcccccCCCc
Q 009119 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSL--PEDLADCSKM 162 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~i--~~~~~~~~~L 162 (543)
++++|++|++++|.+..+ |..+.++++|++|++++|.+.. ++.. +.++++|++|++++|.+..+ +..+..+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 999999999999998865 7789999999999999999885 4443 88999999999999999865 3568999999
Q ss_pred cEEEecCCcccccchhhhccc--ccccEEECCCCcCCc-CchhccCCCc------ccEEEccCCcccc-CCCC-------
Q 009119 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS------- 225 (543)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~~-~~~~------- 225 (543)
++|++++|.+..+....+..+ ++|+.|++++|.+.. .+..+..+.+ |+.|++++|.+.. .+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 999999999887766667766 789999999988754 3444444443 8889998885541 1111
Q ss_pred -----------------------------CcC--CCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhh
Q 009119 226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC 273 (543)
Q Consensus 226 -----------------------------~~~--~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 273 (543)
+.. .++|+.|++++|.+..+ +..+..+++|++|++++|.+..+....+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 111 36788999998888844 5677888999999999998887765443
Q ss_pred c--ceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHH
Q 009119 274 Q--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (543)
Q Consensus 274 ~--~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (543)
. ..|++|++++|.+..+ +..+..+++|+.|++++|.+..++...+..
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------ 360 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------------------------------ 360 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS------------------------------
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC------------------------------
Confidence 3 3589999999988875 667888899999999999887766544432
Q ss_pred hhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH-HHhhCCCCC
Q 009119 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSL 429 (543)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L 429 (543)
.++++.+++++|.++.++. +++|+.+++++|.++.+|.. ..+++.|++++|+++++.. ..+.++++|
T Consensus 361 -----l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 361 -----LEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp -----CCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred -----CCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 2466777777777665543 56677777777766666532 3456666666666665433 223466666
Q ss_pred CEEEcCCCCCcccCCC-ccCCCCCccEEEccCCcCCCC-----CCCCCCCCCcCceeecCCCccccCchh-hhccCCCcE
Q 009119 430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASLP-----ENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRI 502 (543)
Q Consensus 430 ~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~ 502 (543)
+.|++++|+++..... .+..+++|+.|++++|.+... .+..|..+++|++|++++|.++.++.. +..+++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 6666666666654322 244456666666666665422 223455666666666666666655433 455666666
Q ss_pred EeCCCCccccccccccCCCCCCeEeCCCCcCCcCCCCc
Q 009119 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540 (543)
Q Consensus 503 L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 540 (543)
|++++|+++.+|...-. ++|+.|++++|+++.+++..
T Consensus 509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC
T ss_pred eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH
Confidence 66666666665432212 56666666666666555443
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-44 Score=368.19 Aligned_cols=466 Identities=20% Similarity=0.241 Sum_probs=368.3
Q ss_pred hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCcccc-hhh
Q 009119 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAI 87 (543)
Q Consensus 10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~ 87 (543)
.....|+++++++++|..++ ++|++|++++|.++.+ +..|+++++|++|++++|.+..++ .+|
T Consensus 6 ~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 70 (549)
T 2z81_A 6 ASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70 (549)
T ss_dssp TTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT
T ss_pred CCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc
Confidence 34457899999999998774 4699999999999977 468999999999999999999775 589
Q ss_pred hccCCCCEEEcCCCCCCCCChh-hcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCc-CccCC-cccccCCCc
Q 009119 88 GELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSKM 162 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~i~-~~~~~~~~L 162 (543)
..+++|++|++++|.+..++.. ++++++|++|++++|.++. +|..+.++++|++|++++|. +..++ ..+..+++|
T Consensus 71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 9999999999999999987665 9999999999999999984 46788999999999999998 55665 578999999
Q ss_pred cEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc-cCCCcccEEEccCCccccCC----CCCcCCCCCcEEEc
Q 009119 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYM 237 (543)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~l~l 237 (543)
++|++++|.+.......+..+++|++|+++.+....++..+ ..+++|+.|++++|.+..++ .....+++|+.+++
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 99999999998877777899999999999999988777654 56899999999999988652 22345788999999
Q ss_pred CCCCCC-----CCCccccCCCCCCEEeCCCCcccccchh--------hhcceecEEEccCCCCCCC------ChhhcCCC
Q 009119 238 GNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE--------ACQLRLSVLDLSNNSLSGL------PPEIGKMT 298 (543)
Q Consensus 238 ~~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~~~~~~--------~~~~~L~~L~l~~~~i~~~------~~~l~~~~ 298 (543)
+++.+. .++..+..+++|+.+++++|.+..+... .....++.+++.++.+... +......+
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 998776 2334456778899999998877653221 1123477788777765542 22234456
Q ss_pred CCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC-CC---h
Q 009119 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IP---S 374 (543)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~---~ 374 (543)
+++.+++++|.+..++...+ ...++++++++++|.+.. ++ .
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~-----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFS-----------------------------------QHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHH-----------------------------------HHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred cceEEEeccCccccCCHHHH-----------------------------------hcCccccEEEccCCccccccccchh
Confidence 78888888877655432111 123567888888887764 22 2
Q ss_pred hhhccCCccEEEcCCCcCccCC---hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119 375 EIWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (543)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 451 (543)
.+..+++|++|++++|.++.++ ..+..+++|++|++++|+++.++. .+..+++|++|++++|+++.++... .+
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~---~~ 431 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCI---PQ 431 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTS---CT
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhcccccccEEECCCCCcccccchh---cC
Confidence 2456788999999999888865 347888899999999998887654 3577889999999999888766442 36
Q ss_pred CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeCCC
Q 009119 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSD 530 (543)
Q Consensus 452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~ 530 (543)
+|++|++++|.++.. ...+++|++|++++|+++.+|. ...+++|++|++++|+++.++ ..+..+++|+.|++++
T Consensus 432 ~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 432 TLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp TCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CceEEECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 899999999988764 3578899999999999998886 456899999999999999874 5688999999999999
Q ss_pred CcCC
Q 009119 531 NNIS 534 (543)
Q Consensus 531 ~~~~ 534 (543)
|++.
T Consensus 507 N~~~ 510 (549)
T 2z81_A 507 NPWD 510 (549)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 9875
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-44 Score=379.94 Aligned_cols=469 Identities=25% Similarity=0.280 Sum_probs=383.6
Q ss_pred HhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccc-cccc-hHHhcCCCCCCEEEcCCCcCccc-c
Q 009119 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSEL-P 84 (543)
Q Consensus 8 ~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~ 84 (543)
.+++++||++++.++.++...+.. +++|++|++++|. +..+ +..|+++++|++|+|++|.+..+ |
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~------------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPF------------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSS------------CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCcCEEECCCCcCCccChhHCcc------------cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 367899999999999887665554 7889999999994 5567 67899999999999999999976 7
Q ss_pred hhhhccCCCCEEEcCCCCCCC-CChh--hcccCCccEEecCCCCccccc--ccccCCCCCCEEEccCCcCccC-Cccccc
Q 009119 85 AAIGELHMLKSLDVSFNSIMK-IPDE--IGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSL-PEDLAD 158 (543)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i-~~~~~~ 158 (543)
.+|.++++|++|++++|.+.. ++.. +.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 799999999999999999884 4544 889999999999999998653 5789999999999999998854 556666
Q ss_pred C--CCccEEEecCCcccccchhhhccccc------ccEEECCCCcCCc-Cchh---------------------------
Q 009119 159 C--SKMSKLDVEGNKLTVLSNNLIASWTM------LTELIASKNLLNG-MPET--------------------------- 202 (543)
Q Consensus 159 ~--~~L~~L~l~~~~i~~~~~~~~~~~~~------L~~L~l~~~~~~~-~~~~--------------------------- 202 (543)
+ ++|+.|++++|.+.......+..+.+ |++|++++|.+.. .+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 6 88999999998877544333444433 8899999886531 1111
Q ss_pred ---------ccC--CCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccc
Q 009119 203 ---------IGS--LSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 269 (543)
Q Consensus 203 ---------l~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~ 269 (543)
+.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+.
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 111 26799999999988855 56788999999999999999955 567899999999999999998775
Q ss_pred hhhhc--ceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchh
Q 009119 270 VEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346 (543)
Q Consensus 270 ~~~~~--~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (543)
...+. ..|++|++++|.+..++. .+..+++|++|++++|.++.++.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------------------------------- 379 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------------------------------- 379 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------------------------------
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-------------------------------
Confidence 54333 359999999999988654 58889999999999998865532
Q ss_pred hHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh--hhccCCCCceeecccCcCCCCCHH-Hh
Q 009119 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA-IL 423 (543)
Q Consensus 347 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~i~~~~~~-~l 423 (543)
.++++.+++++|.+..++.. ..+++.+++++|.++.++. .+..+++|+.|++++|++++.... .+
T Consensus 380 ---------~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 380 ---------IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp ---------CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred ---------CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 25789999999999988754 4678999999999998754 356899999999999999875432 35
Q ss_pred hCCCCCCEEEcCCCCCccc-----CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccC
Q 009119 424 TSLSSLSCLKLDNNPLRQV-----PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQ 498 (543)
Q Consensus 424 ~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~ 498 (543)
..+++|+.|++++|.+... ....|..+++|++|++++|.++...+..|..+++|++|++++|+++.++..... +
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~ 526 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-A 526 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-S
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-c
Confidence 6689999999999998743 334588899999999999999998888899999999999999999988766555 8
Q ss_pred CCcEEeCCCCccccccccccCCCCCCeEeCCCCcCC
Q 009119 499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 499 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~ 534 (543)
+|+.|++++|+++.++. ..+++|+.|++++|++.
T Consensus 527 ~L~~L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCEEEEEEECCCCCCS--CCCSSCCEEEEEEECCC
T ss_pred cccEEECCCCcCCCCCh--hHhCCcCEEEecCCCcc
Confidence 99999999999998743 23468999999999875
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=362.79 Aligned_cols=455 Identities=21% Similarity=0.241 Sum_probs=377.9
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA 86 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~ 86 (543)
+.+++|++++++++.++...+.. +++|++|++++|.+..++ ..|+++++|++|++++|.+..++ .+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 46889999999999988766554 788999999999999885 67999999999999999999775 58
Q ss_pred hhccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCcCccC-CcccccCCCc
Q 009119 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKM 162 (543)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L 162 (543)
|..+++|++|++++|.+..++. .++.+++|++|++++|.+.. +|..+.++++|++|++++|.+..+ +..+..+.+|
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999999999998765 68999999999999999985 688999999999999999999866 4567777788
Q ss_pred ----cEEEecCCcccccchhhhcccccccEEECCCCcCC--cCchhccCCCc----------------------------
Q 009119 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSR---------------------------- 208 (543)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~---------------------------- 208 (543)
+.+++++|.+..+....+... +|+++++++|... .++..+..++.
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 899999999998887777665 7999998887431 12222222222
Q ss_pred ----ccEEEccCC-ccc-cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEc
Q 009119 209 ----LIRLDLHQN-RIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (543)
Q Consensus 209 ----L~~L~l~~~-~~~-~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 282 (543)
++.+++.++ .+. ..+..+..+++|++++++++.+..+|..+..+ +|++|++++|.+..++.. ....|+++++
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~-~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL-KLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC-BCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc-cccccCEEeC
Confidence 344555544 322 45677888999999999999999999988888 999999999999877763 3456999999
Q ss_pred cCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccccccee
Q 009119 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (543)
Q Consensus 283 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (543)
++|.+...... ..+++|++|++++|.+...... .......++++++
T Consensus 333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---------------------------------~~~~~~~~~L~~L 378 (570)
T 2z63_A 333 TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC---------------------------------SQSDFGTTSLKYL 378 (570)
T ss_dssp ESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE---------------------------------EHHHHTCSCCCEE
T ss_pred cCCcccccccc-ccCCCCCEEeCcCCccCccccc---------------------------------cccccccCccCEE
Confidence 99988774333 7889999999999987544200 0011224689999
Q ss_pred eeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCc
Q 009119 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (543)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~ 440 (543)
++++|.+..++..+..+++|++|++++|.+...+ ..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 379 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence 9999999888777888999999999999998854 36889999999999999999988888999999999999999987
Q ss_pred c-cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccc
Q 009119 441 Q-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQS 512 (543)
Q Consensus 441 ~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~ 512 (543)
+ .....+..+++|++|++++|.+....+..+..+++|++|++++|+++.++. .+..+++|+.|++++|.+..
T Consensus 459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 3 334568999999999999999998888889999999999999999997764 57889999999999999874
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-43 Score=357.58 Aligned_cols=447 Identities=20% Similarity=0.251 Sum_probs=327.1
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~ 89 (543)
+++|+++++++++|..++ ++|++|++++|.+..++ ..|.++++|++|++++|.+..+ |.+|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence 578899999998887663 46889999999888775 6788888899999988888866 568888
Q ss_pred cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCcCccCCcccccCCCc--cEE
Q 009119 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (543)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L--~~L 165 (543)
+++|++|++++|.+..+|.. .+++|++|++++|.++. +|..++++++|++|++++|.+.. ..+..+++| +.|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence 88888888888888877665 67888888888888774 45677777777777777777664 245555566 677
Q ss_pred EecCCcc--cccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCcccc-C-CCCCcCCCCCcEEEcCCCC
Q 009119 166 DVEGNKL--TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNNA 241 (543)
Q Consensus 166 ~l~~~~i--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~l~l~~~~ 241 (543)
++++|.+ .......+..+.. ....+++++|.+.. + +..+..+++|+.+++++|.
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNT----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCE----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred Eeeccccccccccccccccccc----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 7666655 2222222222211 12233444443331 1 1233445555555555553
Q ss_pred -------CCCCCccccCCCCCCEEeCCCCcccccc-----hhhhcceecEEEccCCCCC-CCChhh-----cCCCCCcee
Q 009119 242 -------LSALPAELGKLSKLGTLDLHSNQLKEYC-----VEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKL 303 (543)
Q Consensus 242 -------l~~l~~~l~~~~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~l~~~~i~-~~~~~l-----~~~~~L~~L 303 (543)
+......+..+++|++|+++++.+.... .......++++++++|.+. .+|..+ .++++|+.+
T Consensus 202 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp STTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred cccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 2211225666777888887777665322 1222336888888888777 477766 788888888
Q ss_pred ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCcc
Q 009119 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (543)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~ 383 (543)
++++|.+ .++... .... ....+++.++++++.+..++. ...+++|+
T Consensus 282 ~l~~n~~-~~p~~~------------------------------~~~~--~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~ 327 (520)
T 2z7x_B 282 QVVSDVF-GFPQSY------------------------------IYEI--FSNMNIKNFTVSGTRMVHMLC-PSKISPFL 327 (520)
T ss_dssp EEEECCC-CSCTHH------------------------------HHHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCC
T ss_pred cccccce-ecchhh------------------------------hhcc--cccCceeEEEcCCCccccccc-hhhCCccc
Confidence 8888876 332100 0000 011357889999888776542 24678999
Q ss_pred EEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCC--HHHhhCCCCCCEEEcCCCCCcc-cCCCccCCCCCccEEEcc
Q 009119 384 KLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWP--DAILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLS 459 (543)
Q Consensus 384 ~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~--~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~ 459 (543)
+|++++|.+++ +|..+..+++|+.|++++|+++++. +..+..+++|++|++++|.+.+ ++...+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 99999999988 7888999999999999999999754 3668999999999999999998 777778999999999999
Q ss_pred CCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCCc
Q 009119 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 535 (543)
Q Consensus 460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~ 535 (543)
+|.+....+..+. ++|++|++++|+++.+|..+..+++|++|++++|+++.+|.. +..+++|+.|++++|+++.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 9998765443332 799999999999999999888999999999999999999876 8999999999999999873
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.6e-42 Score=350.56 Aligned_cols=458 Identities=19% Similarity=0.233 Sum_probs=374.8
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCCCCC-hhhcccCCccEEec
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC 121 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l 121 (543)
|+.....+++++.++.+|..+. ++|++|++++|.+..+ +.+|..+++|++|++++|.+..++ .++..+++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4445567889999999987664 8999999999999977 568999999999999999999664 67999999999999
Q ss_pred CCCCccccccc-ccCCCCCCEEEccCCcCcc--CCcccccCCCccEEEecCCc-ccccchhhhcccccccEEECCCCcCC
Q 009119 122 SSNQLKELPSS-LGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLN 197 (543)
Q Consensus 122 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (543)
++|.+..++.. +.++++|++|++++|.+.. .+..+..+++|++|++++|. +..+....+..+++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999987654 8999999999999999984 46789999999999999997 67777677999999999999999996
Q ss_pred c-CchhccCCCcccEEEccCCccccCCCCC-cCCCCCcEEEcCCCCCCCCC----ccccCCCCCCEEeCCCCcccccchh
Q 009119 198 G-MPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP----AELGKLSKLGTLDLHSNQLKEYCVE 271 (543)
Q Consensus 198 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~l~----~~l~~~~~L~~L~l~~n~l~~~~~~ 271 (543)
. .+..+..+++|+.|+++++.+..++..+ ..+++|+.+++++|.+..++ .....+++|+.|++++|.+.+....
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 5 6778899999999999999887665543 45899999999999998652 2334578999999999988743322
Q ss_pred h------hcceecEEEccCCCCCCCC-------hhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcc
Q 009119 272 A------CQLRLSVLDLSNNSLSGLP-------PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338 (543)
Q Consensus 272 ~------~~~~L~~L~l~~~~i~~~~-------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (543)
. ....++.+++++|.+.+++ ..+..+.+++.+.+.++.+...... ..
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~------------------ 301 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF--YD------------------ 301 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS--CC------------------
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhc--cc------------------
Confidence 1 1234899999999766532 2345678888999888765432110 00
Q ss_pred cccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhh-ccCCccEEEcCCCcCcc-CC---hhhccCCCCceeecccC
Q 009119 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-LP---PELSSCASLQTLILSRN 413 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-l~---~~~~~~~~L~~L~l~~~ 413 (543)
..........++.++++++.+..+|..++ .+++|++|++++|.+++ +| ..+..+++|++|++++|
T Consensus 302 ----------l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 302 ----------LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp ----------CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred ----------chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 00011224678999999999999998875 69999999999999987 33 23678999999999999
Q ss_pred cCCCCCH--HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc
Q 009119 414 KIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491 (543)
Q Consensus 414 ~i~~~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 491 (543)
+++++.. ..+..+++|++|++++|+++.++.. +..+++|++|++++|.+....... .++|++|++++|+++.++
T Consensus 372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC
T ss_pred cccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---cCCceEEECCCCChhhhc
Confidence 9998754 5688999999999999999987754 788999999999999987653322 368999999999999765
Q ss_pred hhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCCCCcC
Q 009119 492 TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELV 541 (543)
Q Consensus 492 ~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 541 (543)
..+++|++|++++|+++.+|. ...+++|+.|++++|+++.+|++.+
T Consensus 448 ---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 468999999999999999986 4689999999999999999888643
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-41 Score=350.59 Aligned_cols=475 Identities=21% Similarity=0.258 Sum_probs=356.7
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccch-hhhc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~ 89 (543)
.++||++.++++||..+. +++++|+|++|.++.++ .+|+++++|++|+|++|.+..+++ +|.+
T Consensus 34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence 468999999999999884 46999999999999997 589999999999999999998865 8999
Q ss_pred cCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCcc--CCcccccCCCccEE
Q 009119 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (543)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~L 165 (543)
+++|++|+|++|+++.+|. +|.++++|++|++++|+++.++. .++++++|++|++++|.+.. ++..+..+++|++|
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999999999998865 68999999999999999998874 58999999999999999984 56778999999999
Q ss_pred EecCCcccccchhhhcccccc----cEEECCCCcCCcCchhccCCCcccEEEccCCccc--cCC----------------
Q 009119 166 DVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIP---------------- 223 (543)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~---------------- 223 (543)
++++|.+..+....+..+.++ ..++++.+.+..++........+..+++.++... ..+
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 999999998877667666543 4678888888766655545555666666655322 000
Q ss_pred --------------CCCcCCCCCcEEEcCCCCCC----CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCC
Q 009119 224 --------------SSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (543)
Q Consensus 224 --------------~~~~~~~~L~~l~l~~~~l~----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~ 285 (543)
..+.....+....+..+... ..+..+....+++.+++.++.+..+........++.+++.+|
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence 11112222222222211111 112223334556666666655555444444444566666655
Q ss_pred CCCCCCh--------------------hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccch
Q 009119 286 SLSGLPP--------------------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (543)
Q Consensus 286 ~i~~~~~--------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (543)
.+..++. ....+++|+.++++.|.+.....
T Consensus 339 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~------------------------------ 388 (635)
T 4g8a_A 339 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC------------------------------ 388 (635)
T ss_dssp EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE------------------------------
T ss_pred cccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc------------------------------
Confidence 5444321 12234455555555554422110
Q ss_pred hhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHHHh
Q 009119 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAIL 423 (543)
Q Consensus 346 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~l 423 (543)
.........+++.+++..+....++..+..+++|+.+++.++...... ..+..+++++.++++.|.+.......+
T Consensus 389 ---~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 389 ---CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp ---CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ---cccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 001112235788888888887777777778899999999988766532 357788999999999999999888888
Q ss_pred hCCCCCCEEEcCCCCCc-ccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc-hhhhccCCCc
Q 009119 424 TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR 501 (543)
Q Consensus 424 ~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~ 501 (543)
..+++|+.|++++|.+. .+....|..+++|++|++++|.+....+..|..+++|++|++++|+++.++ ..+..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 99999999999999754 455667999999999999999999988889999999999999999999875 4578899999
Q ss_pred EEeCCCCccccc-cccccCC-CCCCeEeCCCCcCC
Q 009119 502 ILDLSQNSLQSI-PEGFKNL-TSLTELDLSDNNIS 534 (543)
Q Consensus 502 ~L~l~~~~l~~l-~~~l~~~-~~L~~L~l~~~~~~ 534 (543)
+|++++|+++.+ |+.+..+ ++|+.|+|++|++.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999987 6778887 68999999999986
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.7e-43 Score=360.04 Aligned_cols=405 Identities=19% Similarity=0.251 Sum_probs=285.7
Q ss_pred cCccEEEcCccccc-cchHHhcCCCCCCEEEcCCCcCc-------------ccch---------------------hhh-
Q 009119 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPA---------------------AIG- 88 (543)
Q Consensus 45 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~l~-------------~~~~---------------------~~~- 88 (543)
.+++.|+|+++.+. .+|..++++++|++|++++|.+. .+|. .+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999988 77899999999999999999651 1111 110
Q ss_pred ------------------ccCCCCEEEcC--CCCCCCCChhhcccCCccEEecCCCCccc------------------cc
Q 009119 89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (543)
Q Consensus 89 ------------------~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~ 130 (543)
....++.+.+. +|.++.+|..++++++|++|++++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00111111121 34455577777778888888888877776 77
Q ss_pred cccc--CCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCc-ccc--cchhhhccc------ccccEEECCCCcCCc
Q 009119 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW------TMLTELIASKNLLNG 198 (543)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~-i~~--~~~~~~~~~------~~L~~L~l~~~~~~~ 198 (543)
..+. ++++|++|++++|.+. .+|..+..+++|++|++++|. ++. ++.. +..+ ++|++|++++|.+..
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCc
Confidence 7777 7788888888877755 567777777888888888776 653 3332 4443 777778887777777
Q ss_pred Cch--hccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCC-CCEEeCCCCcccccchhhhc
Q 009119 199 MPE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ 274 (543)
Q Consensus 199 ~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~ 274 (543)
+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++.....
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 777 6777777778888777777 676 677777777777777777777777777777 77777777777655543322
Q ss_pred c---eecEEEccCCCCCC-CChhhc-------CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccccc
Q 009119 275 L---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343 (543)
Q Consensus 275 ~---~L~~L~l~~~~i~~-~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (543)
. .|++|++++|.+.+ .|..+. .+++
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~-------------------------------------------- 434 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN-------------------------------------------- 434 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC--------------------------------------------
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCC--------------------------------------------
Confidence 2 36666666666555 333333 3334
Q ss_pred chhhHHHhhhhcccccceeeeCCCCCCCCChhhhc-cCCccEEEcCCCcCccCChhhcc--------CCCCceeecccCc
Q 009119 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNK 414 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~ 414 (543)
++.+++++|.++.++..++. +++|++|++++|.++.+|..... +++|+.|++++|.
T Consensus 435 ---------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 435 ---------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp ---------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred ---------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 45555555555556655543 67888888888888887764322 2388899999988
Q ss_pred CCCCCHHHh-hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc------CCcCCCCCCCCCCCCCcCceeecCCCcc
Q 009119 415 IKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS------YNIASLPENPPFSSLPHLQELYLRRMQL 487 (543)
Q Consensus 415 i~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~------~n~~~~~~~~~~~~~~~L~~L~l~~~~l 487 (543)
++.++...+ ..+++|++|++++|++++++. .+..+++|++|+++ +|.+....+..+..+++|++|++++|++
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 887765543 388899999999998888654 46778889999884 5666777777888889999999999988
Q ss_pred ccCchhhhccCCCcEEeCCCCccccc
Q 009119 488 REAPTDILRLQQLRILDLSQNSLQSI 513 (543)
Q Consensus 488 ~~l~~~~~~~~~L~~L~l~~~~l~~l 513 (543)
+.+|..+. ++|+.|++++|++..+
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CccCHhHh--CcCCEEECcCCCCccc
Confidence 88887755 7899999999977644
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-42 Score=361.10 Aligned_cols=431 Identities=19% Similarity=0.234 Sum_probs=290.3
Q ss_pred cCccEEEcCccccc-cchHHhcCCCCCCEEEc-CCCcCccc-c-------------------------------------
Q 009119 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-P------------------------------------- 84 (543)
Q Consensus 45 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l-~~~~l~~~-~------------------------------------- 84 (543)
.+++.|+|+++.+. .+|..++++++|++|+| ++|.+... +
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999988 77889999999999999 77754311 0
Q ss_pred ---hhh-----------hccCCCCEEEcCC--CCCCCCChhhcccCCccEEecCCCCccc------------------cc
Q 009119 85 ---AAI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (543)
Q Consensus 85 ---~~~-----------~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~ 130 (543)
..+ .....++.+.+.. |.+..+|..++++++|+.|++++|.++. +|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 000 0111222222222 4444577777777777777777777776 77
Q ss_pred cccc--CCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCc-ccc--cchhhhccc-------ccccEEECCCCcCC
Q 009119 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW-------TMLTELIASKNLLN 197 (543)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~-i~~--~~~~~~~~~-------~~L~~L~l~~~~~~ 197 (543)
..+. ++++|++|++++|.+. .+|..+..+++|+.|++++|. +.. ++.. +..+ ++|++|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC
Confidence 7766 7777777777777654 567777777777777777776 553 3322 3333 37777777777777
Q ss_pred cCch--hccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCC-CCEEeCCCCcccccchhhhc
Q 009119 198 GMPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ 274 (543)
Q Consensus 198 ~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~ 274 (543)
.+|. .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+..++.....
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~ 640 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence 7776 6777777777777777777666 667777777777777777777766777776 77777777766655433222
Q ss_pred c---eecEEEccCCCCCCCChhhc-CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHH
Q 009119 275 L---RLSVLDLSNNSLSGLPPEIG-KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (543)
Q Consensus 275 ~---~L~~L~l~~~~i~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (543)
. .|+.|++++|.+.+.++.+. ...
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~---------------------------------------------------- 668 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMD---------------------------------------------------- 668 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTT----------------------------------------------------
T ss_pred cccCCCCEEECcCCcCCCccccchhhhc----------------------------------------------------
Confidence 1 15555555555443211110 000
Q ss_pred hhhhcccccceeeeCCCCCCCCChhhh-ccCCccEEEcCCCcCccCChhhcc--------CCCCceeecccCcCCCCCHH
Q 009119 351 MATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKIKDWPDA 421 (543)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~i~~~~~~ 421 (543)
....++++.+++++|.+..+|..++ .+++|+.|++++|.++.+|..+.. +++|+.|++++|+++.++..
T Consensus 669 --~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~ 746 (876)
T 4ecn_A 669 --DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746 (876)
T ss_dssp --TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred --cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence 0001346667777777777777665 578888999998888887765433 33899999999988876654
Q ss_pred Hh-hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC------CcCCCCCCCCCCCCCcCceeecCCCccccCchhh
Q 009119 422 IL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY------NIASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494 (543)
Q Consensus 422 ~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~ 494 (543)
.. ..+++|+.|+|++|++++++. .+..+++|+.|++++ |.+....+..+..+++|++|++++|.++.+|..+
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred hhhccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh
Confidence 32 388999999999999888654 477888999998876 6677777778888999999999999888888775
Q ss_pred hccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCC
Q 009119 495 LRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 495 ~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~ 534 (543)
. ++|+.|++++|++..+ +..+.....+..+.+.+++.+
T Consensus 826 ~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 826 T--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp C--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred c--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 5 6899999999988765 233333333444444444443
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=343.68 Aligned_cols=424 Identities=22% Similarity=0.204 Sum_probs=324.1
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCcccchhh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~ 87 (543)
+.+++|+++++.++.++...+.. +++|++|++++|.+..+ |..|+++++|++|++++|.+..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence 67899999999999998776665 77899999999999987 67999999999999999999998876
Q ss_pred hccCCCCEEEcCCCCCCC--CChhhcccCCccEEecCCCCcccccccccCCCCC--CEEEccCCcC--c-cCCcccccCC
Q 009119 88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS 160 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~i~~~~~~~~ 160 (543)
.+++|++|++++|.+.. +|..++.+++|++|++++|.+.. ..+..+++| ++|++++|.+ . ..|..+..+.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999985 57899999999999999999876 356677788 9999999988 3 4455555554
Q ss_pred -CccEEEecCCccc-ccchhhhcccccccEEECCCCc-------CCcCchhccCCCcccEEEccCCcccc-----CCCCC
Q 009119 161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI 226 (543)
Q Consensus 161 -~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~ 226 (543)
+.-.+++++|.+. .+....+..++.|+.+++++|. +......+..+++|+.|+++++.+.. ++..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~- 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL- 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH-
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH-
Confidence 2335566666544 3444556778889999998876 32223367778889999998876652 1111
Q ss_pred cCCCCCcEEEcCCCCCC-CCCccc-----cCCCCCCEEeCCCCcccccchhhh-----cceecEEEccCCCCCCCChhhc
Q 009119 227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEAC-----QLRLSVLDLSNNSLSGLPPEIG 295 (543)
Q Consensus 227 ~~~~~L~~l~l~~~~l~-~l~~~l-----~~~~~L~~L~l~~n~l~~~~~~~~-----~~~L~~L~l~~~~i~~~~~~l~ 295 (543)
...++|+++++++|.+. .+|..+ ..+++|+.+++++|.+ .++.... ...+++|++++|.+..++. ..
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 321 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS 321 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence 12458888888888887 777777 7788888888888877 4442111 1237777777776655431 24
Q ss_pred CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChh
Q 009119 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375 (543)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 375 (543)
.+++|++|++++|.+.. .++..
T Consensus 322 ~l~~L~~L~Ls~n~l~~----------------------------------------------------------~~~~~ 343 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTD----------------------------------------------------------TVFEN 343 (520)
T ss_dssp SCCCCCEEECCSSCCCT----------------------------------------------------------TTTTT
T ss_pred hCCcccEEEeECCccCh----------------------------------------------------------hhhhh
Confidence 55666666666665432 23445
Q ss_pred hhccCCccEEEcCCCcCcc---CChhhccCCCCceeecccCcCCC-CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119 376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (543)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 451 (543)
+..+++|++|++++|.++. +|..+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.....+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 5667889999999998886 44568889999999999999988 6655678889999999999988754433332 7
Q ss_pred CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccc
Q 009119 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQS 512 (543)
Q Consensus 452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~ 512 (543)
+|++|++++|.++.+ +..+..+++|++|++++|+++.+|.. +..+++|++|++++|++..
T Consensus 422 ~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 899999999988844 44455899999999999999988876 7788999999999998874
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=340.35 Aligned_cols=445 Identities=22% Similarity=0.266 Sum_probs=292.5
Q ss_pred ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc-hhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCC
Q 009119 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (543)
Q Consensus 47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 124 (543)
.++++++++.++.+|..+. +++++|++++|.+..++ .+|..+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3555555555555554333 45555555555555443 3555555555555555555543 344555555555555555
Q ss_pred CcccccccccCCCCCCEEEccCCcCccCC--cccccCCCccEEEecCCcccccchhhhcccccc--cEEECCCCcC--Cc
Q 009119 125 QLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--NG 198 (543)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~i~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L--~~L~l~~~~~--~~ 198 (543)
.++.+|.. .+++|++|++++|.+..++ ..+..+++|++|++++|.+.... +..+++| ++|++++|.+ ..
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccc
Confidence 55555544 4555555555555555432 45555556666666555554322 3333333 6666666555 22
Q ss_pred -CchhccCCC-cccEEEccCCccccC-C-CCCcCCCCCcEEEcCCCCCC-----CCCccccCCCCCCEEeCCCCcccc--
Q 009119 199 -MPETIGSLS-RLIRLDLHQNRILSI-P-SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE-- 267 (543)
Q Consensus 199 -~~~~l~~~~-~L~~L~l~~~~~~~~-~-~~~~~~~~L~~l~l~~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~~-- 267 (543)
.+..+..+. ....+++++|.+... + ..+..+++|+.+++++|... .....+..+++|+.+++.++.+..
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 223333222 111345555544421 1 12345667777777776422 222346677888888777766553
Q ss_pred ---cchhhhcceecEEEccCCCCCC-CChhh-----cCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcc
Q 009119 268 ---YCVEACQLRLSVLDLSNNSLSG-LPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338 (543)
Q Consensus 268 ---~~~~~~~~~L~~L~l~~~~i~~-~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (543)
++.......+++|++++|.+.+ +|..+ .+++.|+.+++..+.+ .++..
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~---------------------- 322 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE---------------------- 322 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH----------------------
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh----------------------
Confidence 2333333469999999998884 77665 5555555555555543 22100
Q ss_pred cccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCC
Q 009119 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKD 417 (543)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~ 417 (543)
..... .....+++++++++.+..+.. ...+++|++|++++|.++. +|..+..+++|+.|++++|++++
T Consensus 323 --------~~~~~--~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 323 --------ALYSV--FAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp --------HHHHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred --------hhhhh--hccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 00000 012468999999998875542 2467899999999999988 67788999999999999999998
Q ss_pred CCH--HHhhCCCCCCEEEcCCCCCcc-cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhh
Q 009119 418 WPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494 (543)
Q Consensus 418 ~~~--~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~ 494 (543)
+.. ..+.++++|++|++++|.+++ ++...+..+++|++|++++|.++...+..+. ++|++|++++|+++.+|..+
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~ 469 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV 469 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh
Confidence 764 557899999999999999998 8877799999999999999998764433322 79999999999999999988
Q ss_pred hccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCC
Q 009119 495 LRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 495 ~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~ 534 (543)
..+++|++|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus 470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 8999999999999999999876 899999999999999986
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8e-41 Score=344.58 Aligned_cols=413 Identities=19% Similarity=0.268 Sum_probs=302.6
Q ss_pred hhcCeeecCCCccc-ccchhhhhcccccCCCCccccccCccEEEcCccccc-------------cch-------------
Q 009119 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------------KLK------------- 61 (543)
Q Consensus 9 ~~~~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------~l~------------- 61 (543)
+.++.|+++++++. .+|..+.. ++.|++|+|++|.+. .+|
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-------------L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~ 147 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-------------LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-------------CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHH
T ss_pred CCEEEEEecCcccCCcCChHHhc-------------CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHH
Confidence 46889999999987 77866643 789999999999651 000
Q ss_pred --------HHh-------------------cCCCCCCEEEcC--CCcCcccchhhhccCCCCEEEcCCCCCCC-------
Q 009119 62 --------EDL-------------------RNLPLLTVLNVS--HNKLSELPAAIGELHMLKSLDVSFNSIMK------- 105 (543)
Q Consensus 62 --------~~~-------------------~~~~~L~~L~l~--~~~l~~~~~~~~~~~~L~~L~l~~~~~~~------- 105 (543)
..+ .....++.+.+. +|.++.+|..++++++|++|++++|.++.
T Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp HHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc
Confidence 000 011122222222 45666788899999999999999999887
Q ss_pred -----------CChhhc--ccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCc-Ccc--CCcccccC------CCc
Q 009119 106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC------SKM 162 (543)
Q Consensus 106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--i~~~~~~~------~~L 162 (543)
+|..++ ++++|++|++++|.+. .+|..+.++++|++|++++|. ++. +|..+..+ ++|
T Consensus 228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 898888 9999999999999866 788889999999999999998 774 77777665 899
Q ss_pred cEEEecCCcccccch-hhhcccccccEEECCCCcCC-cCchhccCCCcccEEEccCCccccCCCCCcCCCC-CcEEEcCC
Q 009119 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN 239 (543)
Q Consensus 163 ~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~ 239 (543)
++|++++|.+..++. ..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 999999999987765 35889999999999999997 888 888889999999999999999988999999 99999999
Q ss_pred CCCCCCCccccCCC--CCCEEeCCCCcccccchhhhc---------ceecEEEccCCCCCCCChhh-cCCCCCceeecCC
Q 009119 240 NALSALPAELGKLS--KLGTLDLHSNQLKEYCVEACQ---------LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTG 307 (543)
Q Consensus 240 ~~l~~l~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~---------~~L~~L~l~~~~i~~~~~~l-~~~~~L~~L~l~~ 307 (543)
|.++.+|..+...+ +|++|++++|.+....+..+. ..|++|++++|.++.+|..+ ..+++|++|++++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 99998888777654 899999999998764433222 35999999999999988764 4689999999999
Q ss_pred CCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEc
Q 009119 308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387 (543)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l 387 (543)
|.+..++...+.... ..+..+++|++|++
T Consensus 467 N~l~~i~~~~~~~~~---------------------------------------------------~~~~~l~~L~~L~L 495 (636)
T 4eco_A 467 NMLTEIPKNSLKDEN---------------------------------------------------ENFKNTYLLTSIDL 495 (636)
T ss_dssp SCCSBCCSSSSEETT---------------------------------------------------EECTTGGGCCEEEC
T ss_pred CCCCCcCHHHhcccc---------------------------------------------------ccccccCCccEEEC
Confidence 998766543332110 00111235566666
Q ss_pred CCCcCccCChhhc--cCCCCceeecccCcCCCCCHHHhhCCCCCCEEEc------CCCCCcccCCCccCCCCCccEEEcc
Q 009119 388 SRNSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL------DNNPLRQVPSDGFKDIPMLQILDLS 459 (543)
Q Consensus 388 ~~~~l~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L------~~n~l~~~~~~~~~~~~~L~~L~l~ 459 (543)
++|.++.+|..+. .+++|+.|++++|++++++ ..+.++++|+.|++ ++|++.+.....+..+++|++|+++
T Consensus 496 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC-CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred cCCcCCccChhhhhccCCCcCEEECCCCCCCCcC-hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 6666655555554 5566666666666665532 23455666666666 3455555444556677777777777
Q ss_pred CCcCCCCCCCCCCCCCcCceeecCCCccccC
Q 009119 460 YNIASLPENPPFSSLPHLQELYLRRMQLREA 490 (543)
Q Consensus 460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 490 (543)
+|.+..+ +..+. ++|++|++++|++..+
T Consensus 575 ~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 575 SNDIRKV-NEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCCBC-CSCCC--TTCCEEECCSCTTCEE
T ss_pred CCcCCcc-CHhHh--CcCCEEECcCCCCccc
Confidence 7777443 33332 6778888888776643
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-41 Score=350.68 Aligned_cols=435 Identities=17% Similarity=0.219 Sum_probs=317.5
Q ss_pred hhcCeeecCCCccc-ccchhhhhcccccCCCCccccccCccEEEc-Cccccccc--------------------------
Q 009119 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLIL-AHNNIEKL-------------------------- 60 (543)
Q Consensus 9 ~~~~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~l-------------------------- 60 (543)
+.++.|+++++++. .+|..+.. ++.|++|+| ++|.+..-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-------------L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~ 389 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-------------LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-------------CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred CCEEEEECccCCCCCcCchHHhc-------------cccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence 56889999999998 78866644 789999999 76654211
Q ss_pred ---------------hHHh-----------cCCCCCCEEEcCC--CcCcccchhhhccCCCCEEEcCCCCCCC-------
Q 009119 61 ---------------KEDL-----------RNLPLLTVLNVSH--NKLSELPAAIGELHMLKSLDVSFNSIMK------- 105 (543)
Q Consensus 61 ---------------~~~~-----------~~~~~L~~L~l~~--~~l~~~~~~~~~~~~L~~L~l~~~~~~~------- 105 (543)
+..+ .....++.+.+.. |.+..+|..++++++|++|++++|.+..
T Consensus 390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~ 469 (876)
T 4ecn_A 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW 469 (876)
T ss_dssp HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccc
Confidence 0001 1112233333332 5666689999999999999999999987
Q ss_pred -----------CChhhc--ccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCc-Ccc--CCcccccC-------CC
Q 009119 106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC-------SK 161 (543)
Q Consensus 106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--i~~~~~~~-------~~ 161 (543)
+|..++ ++++|++|++++|.+. .+|..+.++++|++|++++|. ++. +|..+..+ ++
T Consensus 470 ~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence 888877 9999999999999866 788889999999999999998 774 66655544 59
Q ss_pred ccEEEecCCcccccch-hhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCC-CcEEEcCC
Q 009119 162 MSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN 239 (543)
Q Consensus 162 L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~ 239 (543)
|+.|++++|.+..++. ..+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 9999999999997776 35899999999999999999888 889999999999999999999988999998 99999999
Q ss_pred CCCCCCCccccCCCC--CCEEeCCCCcccccchhh-------hcceecEEEccCCCCCCCChhhc-CCCCCceeecCCCC
Q 009119 240 NALSALPAELGKLSK--LGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLSGLPPEIG-KMTTLRKLLLTGNP 309 (543)
Q Consensus 240 ~~l~~l~~~l~~~~~--L~~L~l~~n~l~~~~~~~-------~~~~L~~L~l~~~~i~~~~~~l~-~~~~L~~L~l~~~~ 309 (543)
|.+..+|..+...+. |+.|++++|.+....... ....|+.|++++|.+..+|..+. .+++|+.|++++|.
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 999999888777654 999999999987532211 11359999999999999887754 78999999999998
Q ss_pred cCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCC
Q 009119 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389 (543)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (543)
+..++...+.... .....+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~---------------------------------------------------~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 709 MTSIPENSLKPKD---------------------------------------------------GNYKNTYLLTTIDLRF 737 (876)
T ss_dssp CSCCCTTSSSCTT---------------------------------------------------SCCTTGGGCCEEECCS
T ss_pred CCccChHHhcccc---------------------------------------------------ccccccCCccEEECCC
Confidence 8766544332210 0011233566666666
Q ss_pred CcCccCChhhc--cCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC------CCCcccCCCccCCCCCccEEEccCC
Q 009119 390 NSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN------NPLRQVPSDGFKDIPMLQILDLSYN 461 (543)
Q Consensus 390 ~~l~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~------n~l~~~~~~~~~~~~~L~~L~l~~n 461 (543)
|.++.+|..+. .+++|+.|++++|.+++++ ..+.++++|+.|+|++ |.+....+..+..+++|+.|++++|
T Consensus 738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp-~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC-CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCCccchHHhhhccCCCcCEEEeCCCCCCccc-hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 66666665554 5666666666666666543 2345666666666654 5555555556777888888888888
Q ss_pred cCCCCCCCCCCCCCcCceeecCCCccccCc-hhhhccCCCcEEeCCCCcccc
Q 009119 462 IASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQS 512 (543)
Q Consensus 462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~ 512 (543)
.+..+ +..+. ++|+.|++++|++..+. ..+.....+..+.+.++.+..
T Consensus 817 ~L~~I-p~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 817 DIRKV-DEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCCBC-CSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCcc-CHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 87433 33333 68888888888877543 233333344555555555443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-38 Score=325.13 Aligned_cols=441 Identities=20% Similarity=0.200 Sum_probs=327.6
Q ss_pred hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhh
Q 009119 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI 87 (543)
Q Consensus 10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~ 87 (543)
..+++||++++++++|..++ +++++|++++|.+..++ ..|+++++|++|++++|.+..+ |.+|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 96 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred CCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence 34689999999999998773 56999999999999886 6899999999999999999977 6689
Q ss_pred hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc--ccccCCCCCCEEEccCCcCccCCcccccCCCc--c
Q 009119 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--S 163 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L--~ 163 (543)
..+++|++|++++|.+..+|.. .+++|++|++++|.+..++ ..+.++++|++|++++|.+... .+..+++| +
T Consensus 97 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~ 172 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLS 172 (562)
T ss_dssp TTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEE
T ss_pred CCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceee
Confidence 9999999999999999988877 8999999999999999764 7899999999999999998853 45556666 9
Q ss_pred EEEecCCcc--cccchhhhcccc-cccEEECCCCcCCc-Cc-hhccCCCcccEEEccCCccc-----cCCCCCcCCCCCc
Q 009119 164 KLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-MP-ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLA 233 (543)
Q Consensus 164 ~L~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~ 233 (543)
.|++++|.+ .......+..+. ..-.++++.|.+.. ++ ..+..+++|+.+++++|... .....+..+++++
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999999988 544444344433 11145666666533 22 24566778888888887421 1222345566777
Q ss_pred EEEcCCCCCC-----CCCccccCCCCCCEEeCCCCccc-ccchhhhc---ce---ecEEEccCCCCCCCCh-hhc---CC
Q 009119 234 EFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LR---LSVLDLSNNSLSGLPP-EIG---KM 297 (543)
Q Consensus 234 ~l~l~~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~---~~---L~~L~l~~~~i~~~~~-~l~---~~ 297 (543)
.+++.++.+. .++..+ ..++|++|++++|.+. .++...+. .. |+.+++..+.+ .+|. .+. ..
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~ 330 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHT
T ss_pred EEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhcc
Confidence 7776665544 122222 2347777777777766 44443321 22 44444444444 3442 122 23
Q ss_pred CCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC-CChhh
Q 009119 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSEI 376 (543)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~ 376 (543)
.++++|++++|.+...... ...++++++++++|.+.. ++..+
T Consensus 331 ~~L~~L~l~~n~~~~~~~~-------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCP-------------------------------------PSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp CCCSEEEEESSCCCCCCCC-------------------------------------SSCCCCCEEECCSSCCCTTTTTTC
T ss_pred CcceEEEccCCCcccccCc-------------------------------------cCCCCceEEECCCCccccchhhhh
Confidence 5678888887766433210 113567888888887775 66677
Q ss_pred hccCCccEEEcCCCcCccCC---hhhccCCCCceeecccCcCCC-CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCC
Q 009119 377 WEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452 (543)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 452 (543)
..+++|++|++++|.++.++ ..+..+++|+.|++++|.+++ ++...+..+++|++|++++|++++.....+. ++
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 78899999999999998765 457889999999999999988 7766788899999999999998754322232 69
Q ss_pred ccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 453 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
|++|++++|.++.+.. .+..+++|++|++++|+++.+|.. +..+++|+.|++++|.+.
T Consensus 452 L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 452 VKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CSEEECCSSCCCCCCT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCEEECCCCcCcccCh-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 9999999999986543 345899999999999999999887 788999999999999887
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-38 Score=312.27 Aligned_cols=402 Identities=26% Similarity=0.305 Sum_probs=233.0
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCc-ccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (543)
.+.|++|+++++.+..+|..++++++|++|++++|.+. .+|..++++.+|+.+++..|. ..++++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQAHELELN 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHTCSEEECT
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccCCCEEEec
Confidence 45678888888888778877888888888888887766 567777766665333332221 1334566666
Q ss_pred CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (543)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (543)
+|.++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.+..++.. .++|++|++++|.+..+| .
T Consensus 80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~ 148 (454)
T 1jl5_A 80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E 148 (454)
T ss_dssp TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence 6665555442 24566666666666555432 25666666666665544321 146777777777776666 4
Q ss_pred ccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEc
Q 009119 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (543)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 282 (543)
+..+++|+.|++++|.+..+|... .+|++|++++|.++.+| .+..+++|++|++++|.+..++.. ...|++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEEC
Confidence 667777777777777777665443 47777777777777766 467777788888887777765443 236888888
Q ss_pred cCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccccccee
Q 009119 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (543)
Q Consensus 283 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (543)
++|.+..+|. +..+++|++|++++|.+..++. ...+++.+
T Consensus 223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~---------------------------------------~~~~L~~L 262 (454)
T 1jl5_A 223 GNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---------------------------------------LPPSLEAL 262 (454)
T ss_dssp CSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS---------------------------------------CCTTCCEE
T ss_pred cCCcCCcccc-cCCCCCCCEEECCCCcCCcccc---------------------------------------cccccCEE
Confidence 8888877774 7788888999998887765432 11467788
Q ss_pred eeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCC-CCCCEEEcCCCCCcc
Q 009119 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQ 441 (543)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~-~~L~~L~L~~n~l~~ 441 (543)
++++|.+..++.. .++|++|++++|.++.+|.. .++|+.|++++|.++++. .+ ++|++|++++|++++
T Consensus 263 ~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 263 NVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC
T ss_pred ECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc
Confidence 8888887776653 36888999999888876632 267889999988887643 23 588999999988887
Q ss_pred cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCcccc---Cchhhhcc-------------CCCcEEeC
Q 009119 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE---APTDILRL-------------QQLRILDL 505 (543)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~---l~~~~~~~-------------~~L~~L~l 505 (543)
++.. +++|++|++++|.++.+.. .+++|++|++++|+++. +|..+..+ ++|+.|++
T Consensus 332 lp~~----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 332 LPAL----PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp CCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred cccc----CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 6543 5788999999888875432 46888899999988875 45555555 67788888
Q ss_pred CCCccccccccccCCCCCCeEeCCCCcCC
Q 009119 506 SQNSLQSIPEGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 506 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~ 534 (543)
++|.++.+|.. -++++.|.+.+|.+.
T Consensus 404 s~N~l~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 404 ETNPLREFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp -----------------------------
T ss_pred CCCcCCccccc---hhhHhheeCcCcccC
Confidence 88777754221 124566667776654
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-37 Score=321.69 Aligned_cols=451 Identities=23% Similarity=0.270 Sum_probs=299.3
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccch-h
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A 86 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~ 86 (543)
+++++||+++|+|+.+|...+.. +++|++|+|++|.++.++ ++|+++++|++|+|++|.+..+|. +
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 46899999999999999877665 778999999999999986 579999999999999999998875 7
Q ss_pred hhccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCcCccCC-cccccCCC-
Q 009119 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK- 161 (543)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~- 161 (543)
|.++++|++|++++|.++.++. .++++++|++|++++|.+.. +|..+..+++|++|++++|.+..++ ..+..+.+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 8999999999999999998865 58999999999999999984 5678889999999999999988553 33433322
Q ss_pred ---ccEEEecCCcccccchhhhcccccccEEECCCCcCC-----------------------------------------
Q 009119 162 ---MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN----------------------------------------- 197 (543)
Q Consensus 162 ---L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~----------------------------------------- 197 (543)
...++++.+.+..+....+.. ..++.+++.++...
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 235566666555444332221 11222222222110
Q ss_pred ------------------cCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEe
Q 009119 198 ------------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 259 (543)
Q Consensus 198 ------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~ 259 (543)
.....+....+++.+.+.++.+..++ .+.....++.+++.++.+..++. ..++.|+.++
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~ 355 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLT 355 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCc--ccchhhhhcc
Confidence 00011112233444444444333321 23344556666666665554432 2345566666
Q ss_pred CCCCcccccchhhhcceecEEEccCCCCCC---CChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCC
Q 009119 260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336 (543)
Q Consensus 260 l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (543)
+..+.............++.+++++|.+.. .+.....+.+++.+++..+..........
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~------------------ 417 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL------------------ 417 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT------------------
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc------------------
Confidence 666655544333334457777777776654 34456667777778777766544332111
Q ss_pred cccccccchhhHHHhhhhcccccceeeeCCCCCCCC--ChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccC
Q 009119 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN 413 (543)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~ 413 (543)
....++.+++..+..... ...+..+++++.++++.|.+..+ +..+..++.++.|++++|
T Consensus 418 ------------------~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 418 ------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp ------------------TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred ------------------ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence 124556666666554422 22344567777777777777663 444666777777777777
Q ss_pred cCC-CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc-
Q 009119 414 KIK-DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP- 491 (543)
Q Consensus 414 ~i~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~- 491 (543)
.+. .+.+..|..+++|+.|+|++|+++++....|.++++|++|++++|.+..+.+.+|..+++|++|++++|+++.++
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 533 344455677777777777777777777677777777777777777777777667777777777777777777553
Q ss_pred hhhhcc-CCCcEEeCCCCccc
Q 009119 492 TDILRL-QQLRILDLSQNSLQ 511 (543)
Q Consensus 492 ~~~~~~-~~L~~L~l~~~~l~ 511 (543)
..+..+ ++|+.|++++|.+.
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBC
T ss_pred HHHHhhhCcCCEEEeeCCCCc
Confidence 345555 57777777777665
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-37 Score=307.04 Aligned_cols=392 Identities=25% Similarity=0.265 Sum_probs=257.7
Q ss_pred HHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccc-cchHHhcCCCCC-------------CE
Q 009119 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TV 72 (543)
Q Consensus 7 ~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L-------------~~ 72 (543)
..+.++++++++++++++|.++.. +++|++|++++|.+. .+|..++.+++| ++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred ccccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence 357899999999999999987744 788999999999987 678888888764 89
Q ss_pred EEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccC
Q 009119 73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 152 (543)
Q Consensus 73 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i 152 (543)
|++++|.++.+|.. .++|++|++++|.+..+|.. .++|++|++++|.++.++... ++|++|++++|.+..+
T Consensus 76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKL 146 (454)
T ss_dssp EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSC
T ss_pred EEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCC
Confidence 99999988887762 36899999999988887753 478999999999888776432 6899999999988888
Q ss_pred CcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCC
Q 009119 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232 (543)
Q Consensus 153 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 232 (543)
| .+..+++|++|++++|.+..++.. ..+|++|++++|.+..+| .+..+++|+.|++++|.+..+|... ++|
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L 217 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSL 217 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTC
T ss_pred c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Ccc
Confidence 7 588889999999999888765532 358889999998888877 5788888999999888888776543 588
Q ss_pred cEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCc
Q 009119 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (543)
Q Consensus 233 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~ 312 (543)
+++++++|.+..+|. +..+++|++|++++|.+..++.. ...+++|++++|.+.++|.. .++|++|++++|.++.
T Consensus 218 ~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE
T ss_pred cEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc
Confidence 888888888887774 77888888888888888766542 24577777777777766543 2566777777766543
Q ss_pred ccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcC
Q 009119 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392 (543)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 392 (543)
++ .. .++|+.|++++|.+
T Consensus 292 l~-----------------------------------------------------------~~---~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 292 LS-----------------------------------------------------------EL---PPNLYYLNASSNEI 309 (454)
T ss_dssp ES-----------------------------------------------------------CC---CTTCCEEECCSSCC
T ss_pred cc-----------------------------------------------------------Cc---CCcCCEEECcCCcC
Confidence 21 10 24788888888888
Q ss_pred ccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCC--CCCCC
Q 009119 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL--PENPP 470 (543)
Q Consensus 393 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~ 470 (543)
+.++.. .++|+.|++++|++++++. .+++|+.|++++|.++.++. .+++|++|++++|.+.. ..+..
T Consensus 310 ~~i~~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 310 RSLCDL---PPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp SEECCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CcccCC---cCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHH
Confidence 776531 2588999999998887653 36899999999999887765 46899999999999887 45566
Q ss_pred CCCC-------------CcCceeecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119 471 FSSL-------------PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 471 ~~~~-------------~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~ 511 (543)
+..+ ++|++|++++|.++.++.. -++++.|.+++|.+.
T Consensus 379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp CCEEECCC----------------------------------------------
T ss_pred HHhhhhcccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence 6665 8999999999999865332 146788888888766
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-36 Score=300.13 Aligned_cols=350 Identities=22% Similarity=0.338 Sum_probs=259.1
Q ss_pred hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEe
Q 009119 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l 167 (543)
..+++++.|+++++.+..++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++. +..+++|++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 456789999999998888764 7789999999999999988876 8889999999999999888765 888899999999
Q ss_pred cCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc
Q 009119 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (543)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~ 247 (543)
++|.+..+.. +..+++|++|++++|.+..++ .+..+++|+.|++++ .+..++ .+..+++|++|++++|.+..++
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~- 193 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDIS- 193 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCCh-
Confidence 9988887764 778888888888888887765 377788888888864 333332 3667778888888887777664
Q ss_pred cccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHH
Q 009119 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (543)
Q Consensus 248 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 327 (543)
.+..+++|++|++++|.+..+........|++|++++|.+..++ .+..+++|++|++++|.+.
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~---------------- 256 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS---------------- 256 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC----------------
T ss_pred hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc----------------
Confidence 36677777777777777766554434444666666666655543 3455555555555555442
Q ss_pred HHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCce
Q 009119 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407 (543)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~ 407 (543)
.++. +..+++|++|++++|.++.++. +..+++|+.
T Consensus 257 -------------------------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 257 -------------------------------------------NLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp -------------------------------------------CCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred -------------------------------------------cchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 2222 4456778888888888877765 677888888
Q ss_pred eecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCcc
Q 009119 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 487 (543)
Q Consensus 408 L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l 487 (543)
|++++|+++++.+ +..+++|+.|++++|++.++.. +..+++|++|++++|.+... ..+..+++|++|++++|++
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 8888888877655 6778888888888888776654 66778888888888877765 3567778888888888887
Q ss_pred ccCchhhhccCCCcEEeCCCCccccccc
Q 009119 488 REAPTDILRLQQLRILDLSQNSLQSIPE 515 (543)
Q Consensus 488 ~~l~~~~~~~~~L~~L~l~~~~l~~l~~ 515 (543)
+.++. +..+++|+.|++++|.++.+|.
T Consensus 366 ~~~~~-~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 366 SDLTP-LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp CBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred Cccch-hhcCCCCCEEeccCCcccCCch
Confidence 76654 6777888888888887776543
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-35 Score=295.12 Aligned_cols=347 Identities=25% Similarity=0.362 Sum_probs=211.9
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
+++++.|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 4568888888887777753 7777888888888888777765 7778888888888887777665 77778888888888
Q ss_pred CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (543)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (543)
|.+..++. +.++++|++|++++|.+..++ .+..+++|+.|++++ .+..+.. +..+++|++|++++|.+..++ .+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l 195 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSDIS-VL 195 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence 77777654 677777777777777777664 466777777777753 2332222 555666666666666655543 24
Q ss_pred cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEcc
Q 009119 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (543)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 283 (543)
..+++|+.|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++| +++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L----------------------~l~ 251 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDL----------------------DLA 251 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEE----------------------ECC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEE----------------------ECC
Confidence 455555555555555554432 344455555555555544432 24444445555 455
Q ss_pred CCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceee
Q 009119 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (543)
Q Consensus 284 ~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (543)
+|.+..++. +..+++|++|++++|.+..++
T Consensus 252 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~------------------------------------------------- 281 (466)
T 1o6v_A 252 NNQISNLAP-LSGLTKLTELKLGANQISNIS------------------------------------------------- 281 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-------------------------------------------------
T ss_pred CCccccchh-hhcCCCCCEEECCCCccCccc-------------------------------------------------
Confidence 554444433 556666666666666553321
Q ss_pred eCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccC
Q 009119 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443 (543)
Q Consensus 364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 443 (543)
. +..+++|++|++++|.++.++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|+++++.
T Consensus 282 ----------~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 282 ----------P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp ----------G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred ----------c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch
Confidence 1 2234455555555555555443 4555666666666666655544 455666666666666665542
Q ss_pred CCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc
Q 009119 444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491 (543)
Q Consensus 444 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 491 (543)
.+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.+|
T Consensus 348 --~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 348 --SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp --GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred --hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 35566666666666666655433 556666666666666666544
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-35 Score=291.92 Aligned_cols=368 Identities=23% Similarity=0.276 Sum_probs=229.2
Q ss_pred CEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcc-cc-cccccCCCCCCEEEccCC
Q 009119 71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLK-EL-PSSLGRCLNLSDFKASNN 147 (543)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~L~~L~l~~~ 147 (543)
+.++.+++.++.+|. + .++|++|++++|.+..+ +..+.++++|++|++++|.+. .+ +..+.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 456677777777765 2 26788888888877754 566777888888888887775 44 355777778888888877
Q ss_pred cCccC-CcccccCCCccEEEecCCcccc--cchhhhcccccccEEECCCCcCCcC-chh-ccCCCcccEEEccCCccccC
Q 009119 148 CITSL-PEDLADCSKMSKLDVEGNKLTV--LSNNLIASWTMLTELIASKNLLNGM-PET-IGSLSRLIRLDLHQNRILSI 222 (543)
Q Consensus 148 ~~~~i-~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-l~~~~~L~~L~l~~~~~~~~ 222 (543)
.+..+ +..+..+++|++|++++|.+.. .....+..+++|++|++++|.+..+ |.. +..+++|+.|++++|.+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 77754 5667777777777777777764 2223366666777777777766554 332 56666677777766666543
Q ss_pred C-CCCcCC--CCCcEEEcCCCCCCCCCcc---------ccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCC
Q 009119 223 P-SSISGC--CSLAEFYMGNNALSALPAE---------LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290 (543)
Q Consensus 223 ~-~~~~~~--~~L~~l~l~~~~l~~l~~~---------l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~ 290 (543)
+ ..+..+ .+++.++++++.+..++.. +..+++|++|++++|.+... .
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---------------------~ 228 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES---------------------M 228 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH---------------------H
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc---------------------c
Confidence 2 233322 4555666666555544321 12234444444444444322 1
Q ss_pred Chhhc---CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCC
Q 009119 291 PPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM 367 (543)
Q Consensus 291 ~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 367 (543)
+..+. ..++++.+++++|....... ...
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------------------------------------~~~ 259 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSF-------------------------------------------------GHT 259 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCT-------------------------------------------------TCC
T ss_pred hhhhhccccccceeeEeecccccccccc-------------------------------------------------chh
Confidence 22222 12455555555543321100 000
Q ss_pred CCCC---CChhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccC
Q 009119 368 NLSA---IPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443 (543)
Q Consensus 368 ~~~~---~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 443 (543)
.+.. ........++|+.+++++|.++. .|..+..+++|++|++++|.++++.+..+.++++|++|++++|.++++.
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 0000 00001113567777787777766 4556777777888888888777777666777778888888877777776
Q ss_pred CCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 444 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
...|..+++|++|++++|.+....+..+..+++|++|++++|+++.++.. +..+++|++|++++|++.
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 66677777777777777777776666777777777777777777766553 456777777777777766
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.3e-35 Score=291.12 Aligned_cols=368 Identities=16% Similarity=0.201 Sum_probs=295.5
Q ss_pred ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCC-CC-ChhhcccCCccEEecCC
Q 009119 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS 123 (543)
Q Consensus 47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~ 123 (543)
-+.++.+++.++.+|. +. ++|++|++++|.+..+ |.+|.++++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4678999999999987 33 8999999999999977 668999999999999999886 44 56789999999999999
Q ss_pred CCcccc-cccccCCCCCCEEEccCCcCcc-CCcc--cccCCCccEEEecCCcccccchh-hhcccccccEEECCCCcCCc
Q 009119 124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG 198 (543)
Q Consensus 124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-i~~~--~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~ 198 (543)
|.+..+ |..+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..+... .+..+++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 999966 6789999999999999999985 3333 88899999999999999887544 48899999999999999976
Q ss_pred Cc-hhccCC--CcccEEEccCCccccCCCC---------CcCCCCCcEEEcCCCCCC-CCCccccC---CCCCCEEeCCC
Q 009119 199 MP-ETIGSL--SRLIRLDLHQNRILSIPSS---------ISGCCSLAEFYMGNNALS-ALPAELGK---LSKLGTLDLHS 262 (543)
Q Consensus 199 ~~-~~l~~~--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~l~l~~~~l~-~l~~~l~~---~~~L~~L~l~~ 262 (543)
++ ..+..+ .+++.++++++.+..++.. +..+++|++|++++|.+. ..+..+.. .++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 53 344444 7899999999998876532 345689999999999988 34444433 37788888887
Q ss_pred CcccccchhhhcceecEEEccCCCCCCC-Chhhc--CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccc
Q 009119 263 NQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIG--KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (543)
Q Consensus 263 n~l~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (543)
|........ .+.+... +..+. ..++
T Consensus 249 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~---------------------------------------- 276 (455)
T 3v47_A 249 SYNMGSSFG------------HTNFKDPDNFTFKGLEASG---------------------------------------- 276 (455)
T ss_dssp CTTTSCCTT------------CCSSCCCCTTTTGGGTTSC----------------------------------------
T ss_pred ccccccccc------------hhhhccCcccccccccccC----------------------------------------
Confidence 764422111 1111110 00111 1234
Q ss_pred ccccchhhHHHhhhhcccccceeeeCCCCCCC-CChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCC
Q 009119 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKD 417 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~ 417 (543)
++.++++++.+.. .+..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+++
T Consensus 277 -------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 277 -------------------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp -------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred -------------------ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 4455555555443 344566788999999999999985 5678999999999999999999
Q ss_pred CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 418 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
+.+..+.++++|++|++++|+++++...+|..+++|++|++++|.+.......+..+++|++|++++|.++
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 98888999999999999999999988888999999999999999999887778899999999999999988
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-35 Score=290.47 Aligned_cols=363 Identities=20% Similarity=0.247 Sum_probs=212.5
Q ss_pred cccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (543)
++++|++|+++++.+..+| .+..+++|++|++++|.+..++ ++.+++|++|++++|.+..++ ++.+++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 3566666666666666654 4666666666666666666553 566666666666666666553 5566666666666
Q ss_pred CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC-cccccchhhhcccccccEEECCCCcCCcCch
Q 009119 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (543)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (543)
+|.++.++ +..+++|++|++++|.++.++ +..+++|+.|++++| .+..+ .+..+++|++|++++|.++.++
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC-
T ss_pred CCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec-
Confidence 66666553 556666666666666666552 555566666666655 23333 1444455555555555554443
Q ss_pred hccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEE
Q 009119 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281 (543)
Q Consensus 202 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 281 (543)
+..+++|+.|++++|.+..++ +..+++|+.|++++|.++.+| +..+++|+. |+
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~----------------------L~ 239 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTY----------------------FD 239 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSE----------------------EE
T ss_pred -cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCE----------------------EE
Confidence 444455555555555544431 344444444444444444443 344444444 44
Q ss_pred ccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccce
Q 009119 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361 (543)
Q Consensus 282 l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 361 (543)
+++|.+++++ ...+++|+.++++.+.+ +.
T Consensus 240 l~~N~l~~~~--~~~l~~L~~L~l~~n~L-------------------------------------------------~~ 268 (457)
T 3bz5_A 240 CSVNPLTELD--VSTLSKLTTLHCIQTDL-------------------------------------------------LE 268 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTCCC-------------------------------------------------SC
T ss_pred eeCCcCCCcC--HHHCCCCCEEeccCCCC-------------------------------------------------CE
Confidence 4444444443 34455666666655533 33
Q ss_pred eeeCCCCCC-CCChhhhccCCccEEEcCCCcCc-cCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCC
Q 009119 362 LSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (543)
Q Consensus 362 l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l 439 (543)
+++++|... .++ .+.+++|+.|++++|... .+|. ..++|+.|+++ ++++|++|++++|++
T Consensus 269 L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 269 IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTEL 330 (457)
T ss_dssp CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCC
T ss_pred EECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCCcc
Confidence 444444322 222 234677788888877643 2442 33455555544 447889999999988
Q ss_pred cccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc-ccccc-c
Q 009119 440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG-F 517 (543)
Q Consensus 440 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~-~l~~~-l 517 (543)
++++ +..+++|+.|++++|.+++ ++.|..|.+++|.+... ..+..|+.+++++|+++ .+|.. +
T Consensus 331 ~~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 331 TELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp SCCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred cccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhHh
Confidence 8863 7788899999999888765 35677778888877754 24567888889998887 56643 3
Q ss_pred cCCCCCCeEeCC
Q 009119 518 KNLTSLTELDLS 529 (543)
Q Consensus 518 ~~~~~L~~L~l~ 529 (543)
....+.......
T Consensus 396 ~~~~~~~~~~~~ 407 (457)
T 3bz5_A 396 DQFGNPMNIEPG 407 (457)
T ss_dssp CTTSCCCEEEES
T ss_pred cccCceeeccCC
Confidence 334444444433
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.1e-34 Score=280.15 Aligned_cols=259 Identities=27% Similarity=0.355 Sum_probs=225.6
Q ss_pred HHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc
Q 009119 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (543)
Q Consensus 5 ~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~ 84 (543)
+...+.+++|+++++.++.+| .+ .. +++|++|++++|.++.++ +..+++|++|++++|.+..++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l-~~------------l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GI-EK------------LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TG-GG------------CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred hhHcCCCCEEEccCCCcccCh-hh-cc------------cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 456789999999999999987 33 22 788999999999999985 999999999999999999884
Q ss_pred hhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCc-CccCCcccccCCCcc
Q 009119 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMS 163 (543)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~i~~~~~~~~~L~ 163 (543)
++.+++|++|++++|.+..++ +..+++|++|++++|.++.++ +..+++|++|++++|. +..+ .+..+++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 889999999999999999875 889999999999999999874 7889999999999994 4455 578899999
Q ss_pred EEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC
Q 009119 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (543)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 243 (543)
.|++++|.+..++ +..+++|++|++++|.+..++ +..+++|+.|++++|.+..+| +..+++|+.|++++|.++
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 9999999999876 778899999999999998874 788999999999999999987 788999999999999999
Q ss_pred CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCC-CChhhcCCCCCceeecCCCCc
Q 009119 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310 (543)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~ 310 (543)
.++ +..+++|+.|+++.+.+ +.+++++|...+ +| ++.+++|+.|++++|..
T Consensus 247 ~~~--~~~l~~L~~L~l~~n~L------------~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQTDL------------LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCCC------------SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred CcC--HHHCCCCCEEeccCCCC------------CEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 876 56789999999887754 566777776554 43 46788999999998864
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=263.06 Aligned_cols=306 Identities=19% Similarity=0.335 Sum_probs=163.7
Q ss_pred hcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEE
Q 009119 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (543)
Q Consensus 64 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 143 (543)
+..+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+.++++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 345566677777766666654 36666666666666666666554 666666666666666666553 355556666666
Q ss_pred ccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCC
Q 009119 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (543)
Q Consensus 144 l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 223 (543)
+++|.+..++. +..+++|+.|++++|. .......+..+++|+.|++++|.+..++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANH------------------------NLSDLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCT------------------------TCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred CcCCcccCchh-hccCCceeEEECCCCC------------------------CcccccchhhCCCCcEEEecCCCcCCch
Confidence 66665555443 4455555555555542 2222222444455555555555444433
Q ss_pred CCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCcee
Q 009119 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL 303 (543)
Q Consensus 224 ~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L 303 (543)
. +..+++|+++++++|.+..++. +..+++|+.+++++|.+..+........|++|++++|.++.++. +..+++|++|
T Consensus 172 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 248 (347)
T 4fmz_A 172 P-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWL 248 (347)
T ss_dssp G-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred h-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence 2 4445555555555555554433 45555555555555555544332222234444444444444433 4455555555
Q ss_pred ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCcc
Q 009119 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (543)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~ 383 (543)
++++|.+..+ ..+..+++|+
T Consensus 249 ~l~~n~l~~~------------------------------------------------------------~~~~~l~~L~ 268 (347)
T 4fmz_A 249 EIGTNQISDI------------------------------------------------------------NAVKDLTKLK 268 (347)
T ss_dssp ECCSSCCCCC------------------------------------------------------------GGGTTCTTCC
T ss_pred ECCCCccCCC------------------------------------------------------------hhHhcCCCcC
Confidence 5555543221 1223345566
Q ss_pred EEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC
Q 009119 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (543)
Q Consensus 384 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 463 (543)
+|++++|.+++++ .+..+++|+.|++++|.+++..+..+.++++|++|++++|+++++.. +..+++|++|++++|.+
T Consensus 269 ~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 6666666655553 35556666666666666665555555666666666666666555443 44555555555555544
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-32 Score=261.88 Aligned_cols=304 Identities=23% Similarity=0.341 Sum_probs=234.4
Q ss_pred cccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (543)
++++|++|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 47889999999999998864 8889999999999999998876 889999999999999988875 68899999999999
Q ss_pred CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (543)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (543)
+|.+..++. +..+++|++|++++|........+..+++|++|++++|.+..+.. +..+++|++|++++|.+..++.
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 194 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP- 194 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-
Confidence 999998876 889999999999999666555568889999999999998877665 7778888888888888877765
Q ss_pred ccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEc
Q 009119 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (543)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 282 (543)
+..+++|+.+++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~------------- 259 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN------------- 259 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-------------
T ss_pred ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-------------
Confidence 6677788888888877776544 6667777777777777776655 666777777777766665432
Q ss_pred cCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccccccee
Q 009119 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (543)
Q Consensus 283 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (543)
.+..+++|++|++++|.+..+
T Consensus 260 ----------~~~~l~~L~~L~l~~n~l~~~------------------------------------------------- 280 (347)
T 4fmz_A 260 ----------AVKDLTKLKMLNVGSNQISDI------------------------------------------------- 280 (347)
T ss_dssp ----------GGTTCTTCCEEECCSSCCCCC-------------------------------------------------
T ss_pred ----------hHhcCCCcCEEEccCCccCCC-------------------------------------------------
Confidence 355666777777777655322
Q ss_pred eeCCCCCCCCChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCc
Q 009119 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (543)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~ 440 (543)
..+..+++|++|++++|.++.. +..+..+++|+.|++++|++++..+ +..+++|++|++++|+++
T Consensus 281 -----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 -----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 1233456777777777777653 4456777888888888888777665 677888888888888764
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-31 Score=260.86 Aligned_cols=305 Identities=23% Similarity=0.257 Sum_probs=176.0
Q ss_pred CCCCCEEEccCCcCccCCcc-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch-hccCCCcccEEE
Q 009119 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD 213 (543)
Q Consensus 136 ~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~ 213 (543)
+.+++.++++++.+..+|.. +..+++|++|++++|.+..+....+..+++|++|++++|.+..++. .+..+++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666666544 4556666666666666666665556666666666666666655533 355666666666
Q ss_pred ccCCccccCCCC-CcCCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCC
Q 009119 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (543)
Q Consensus 214 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~ 291 (543)
+++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.++.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------- 181 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 181 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------------------
Confidence 666666655544 355666666666666665442 34555666666666665554332
Q ss_pred hhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC
Q 009119 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (543)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (543)
+..+++|+.+++++|.+..++
T Consensus 182 --~~~l~~L~~L~l~~n~l~~~~--------------------------------------------------------- 202 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYNLLSTLA--------------------------------------------------------- 202 (390)
T ss_dssp --GGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred --cccccccceeecccccccccC---------------------------------------------------------
Confidence 334455555665555443221
Q ss_pred CChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (543)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 451 (543)
..++|++|++++|.++.+|.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.++....|..++
T Consensus 203 ------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 203 ------IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp ------CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ------CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 112455555555555554322 234566666666655554 2345566666666666666655555556666
Q ss_pred CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCC
Q 009119 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (543)
Q Consensus 452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~ 531 (543)
+|++|++++|.+... +..+..+++|++|++++|+++.+|..+..+++|++|++++|.++.++ +..+++|+.|++++|
T Consensus 273 ~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 273 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp SCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred cCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 666666666655543 22234556666666666666666655666666666666666666553 455666666666666
Q ss_pred cCC
Q 009119 532 NIS 534 (543)
Q Consensus 532 ~~~ 534 (543)
++.
T Consensus 350 ~~~ 352 (390)
T 3o6n_A 350 DWD 352 (390)
T ss_dssp CEE
T ss_pred Ccc
Confidence 653
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=267.70 Aligned_cols=109 Identities=25% Similarity=0.315 Sum_probs=69.3
Q ss_pred CCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEc
Q 009119 380 GEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (543)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 458 (543)
.+|++|++++|.++.+|. .+..+++|+.|++++|.++++....+.++++|+.|++++|++.++...+|..+++|++|++
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 456666666666666653 4556666666666666666666555666666666666666666665555666666666666
Q ss_pred cCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119 459 SYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 459 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
++|.++......|..+++|++|++++|.+.
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 666666655555666666666666666655
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=267.34 Aligned_cols=106 Identities=24% Similarity=0.257 Sum_probs=65.7
Q ss_pred cceeeeCCCCCCCCCh-hhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 359 SKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 359 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
++.+++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|+++++.+..|.++++|+.|++++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 4444444444444442 34455666777777666666432 356666677777777766666666666667777777777
Q ss_pred CCCcccCCCccCCCCCccEEEccCCcCC
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 464 (543)
|.++.++...|..+++|++|++++|.+.
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 7666666666666667777777666654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=8.9e-31 Score=254.66 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=104.0
Q ss_pred ccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCCC-hhhcccCCccEEe
Q 009119 44 AVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFD 120 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~ 120 (543)
.++++.|+++++.+..+|. .|..+++|++|++++|.+..++. +|..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 4567777777777776664 45667777777777777666543 6667777777777777766553 3466677777777
Q ss_pred cCCCCccccccc-ccCCCCCCEEEccCCcCccCC-cccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCc
Q 009119 121 CSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198 (543)
Q Consensus 121 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (543)
+++|.+..+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+. +..++.|+.+++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 777776666644 356666666666666666543 34556666666666666655543 3344555555555554433
Q ss_pred CchhccCCCcccEEEccCCccccC
Q 009119 199 MPETIGSLSRLIRLDLHQNRILSI 222 (543)
Q Consensus 199 ~~~~l~~~~~L~~L~l~~~~~~~~ 222 (543)
++ ..+.|+.|++++|.+..+
T Consensus 201 ~~----~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 201 LA----IPIAVEELDASHNSINVV 220 (390)
T ss_dssp EE----CCSSCSEEECCSSCCCEE
T ss_pred cC----CCCcceEEECCCCeeeec
Confidence 32 223444445544444433
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.8e-30 Score=266.16 Aligned_cols=305 Identities=23% Similarity=0.261 Sum_probs=170.6
Q ss_pred CCCCCEEEccCCcCccCCcc-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch-hccCCCcccEEE
Q 009119 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD 213 (543)
Q Consensus 136 ~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~ 213 (543)
+.+++.++++++.+..+|.. +..+++|+.|++++|.+..+....+..+++|++|++++|.+..++. .+..+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34666666666666655543 4556666666666666666555556666666666666666655443 345566666666
Q ss_pred ccCCccccCCCC-CcCCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCC
Q 009119 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (543)
Q Consensus 214 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~ 291 (543)
+++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence 666666555543 355566666666666555433 24555555666655555554332
Q ss_pred hhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC
Q 009119 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (543)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (543)
+..+++|+.+++++|.+..++
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l~--------------------------------------------------------- 208 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTLA--------------------------------------------------------- 208 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred --hhhhhhhhhhhcccCcccccc---------------------------------------------------------
Confidence 233445555555555443221
Q ss_pred CChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (543)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 451 (543)
..++|+.|++++|.++.++..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.++....|..++
T Consensus 209 ------~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 209 ------IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ------CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ------CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 1224555555555555443221 24556666666655553 2345566666666666666555555555666
Q ss_pred CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCC
Q 009119 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (543)
Q Consensus 452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~ 531 (543)
+|+.|++++|.+..+ +..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+..++ +..+++|+.|++++|
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 666666666655543 22334556666666666666666666666666666666666666553 455666666666666
Q ss_pred cCC
Q 009119 532 NIS 534 (543)
Q Consensus 532 ~~~ 534 (543)
++.
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 653
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.5e-29 Score=238.63 Aligned_cols=287 Identities=23% Similarity=0.286 Sum_probs=219.7
Q ss_pred ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCC
Q 009119 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (543)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~ 261 (543)
..++.++++++.+..+|..+. +.++.|++++|.+..++. .+..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 356677777777666665443 567777887777776654 567777888888888877755 6677778888888888
Q ss_pred CCcccccchhhhcceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccc
Q 009119 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (543)
Q Consensus 262 ~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (543)
+|.++.++...+ ..|++|++++|.+..++. .+.++++|++|++++|.+...+
T Consensus 109 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------- 161 (330)
T 1xku_A 109 KNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------------- 161 (330)
T ss_dssp SSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG--------------------------
T ss_pred CCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC--------------------------
Confidence 887776665544 468888888887777544 4788889999998888764321
Q ss_pred cccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH
Q 009119 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420 (543)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 420 (543)
..+..+..+++|++|++++|.++.+|..+. ++|++|++++|.++++.+
T Consensus 162 ------------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 162 ------------------------------IENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp ------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred ------------------------------cChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCH
Confidence 122345567889999999999888886543 789999999999998888
Q ss_pred HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhh-----
Q 009119 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL----- 495 (543)
Q Consensus 421 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~----- 495 (543)
..+.++++|++|++++|.++++....+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++....
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 8889999999999999999988877788899999999999988744 4567889999999999999997765432
Q ss_pred --ccCCCcEEeCCCCcccc--c-cccccCCCCCCeEeCCCCc
Q 009119 496 --RLQQLRILDLSQNSLQS--I-PEGFKNLTSLTELDLSDNN 532 (543)
Q Consensus 496 --~~~~L~~L~l~~~~l~~--l-~~~l~~~~~L~~L~l~~~~ 532 (543)
..+.++.|++++|.+.. + |..+..+++++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 24789999999999873 4 6778999999999999985
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-29 Score=259.24 Aligned_cols=304 Identities=22% Similarity=0.289 Sum_probs=166.8
Q ss_pred ccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCCCh-hhcccCCccEEe
Q 009119 44 AVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFD 120 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~ 120 (543)
+++++.++++++.+..+|. .|.++++|+.|++++|.+..++. +|..+++|++|++++|.+..++. .++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4556666776666666653 45666677777777666665543 66666667777776666665543 356666666666
Q ss_pred cCCCCccccccc-ccCCCCCCEEEccCCcCccCC-cccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCc
Q 009119 121 CSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198 (543)
Q Consensus 121 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (543)
+++|.++.+|.. +.++++|++|++++|.+..++ ..+..+++|+.|++++|.+..++ +..++.|+.+++++|.+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 666666666543 356666666666666666443 34556666666666666655443 3344555555555554433
Q ss_pred CchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceec
Q 009119 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278 (543)
Q Consensus 199 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~ 278 (543)
++ ..+.|+.|++++|.+..++..+ .++|+.|++++|.++.. ..+..+++|+.|++++|.+..+
T Consensus 207 l~----~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~---------- 269 (597)
T 3oja_B 207 LA----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI---------- 269 (597)
T ss_dssp EE----CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE----------
T ss_pred cc----CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC----------
Confidence 22 2234555555555444333222 13444444444444332 2333334444444433333222
Q ss_pred EEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccc
Q 009119 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 358 (543)
Q Consensus 279 ~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (543)
.|..+..+++|+.|++++|.+..++
T Consensus 270 -----------~~~~~~~l~~L~~L~Ls~N~l~~l~-------------------------------------------- 294 (597)
T 3oja_B 270 -----------MYHPFVKMQRLERLYISNNRLVALN-------------------------------------------- 294 (597)
T ss_dssp -----------ESGGGTTCSSCCEEECTTSCCCEEE--------------------------------------------
T ss_pred -----------CHHHhcCccCCCEEECCCCCCCCCC--------------------------------------------
Confidence 2334555566666666665543322
Q ss_pred cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCC
Q 009119 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (543)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~ 438 (543)
..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+. +..+++|+.|++++|+
T Consensus 295 ---------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 ---------------LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---------------CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred ---------------cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence 1222345566666666666666665666666666666666666554 3555666666666666
Q ss_pred Cc
Q 009119 439 LR 440 (543)
Q Consensus 439 l~ 440 (543)
+.
T Consensus 357 ~~ 358 (597)
T 3oja_B 357 WD 358 (597)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.6e-29 Score=237.50 Aligned_cols=280 Identities=22% Similarity=0.298 Sum_probs=241.2
Q ss_pred hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCccc-chhh
Q 009119 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI 87 (543)
Q Consensus 10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~ 87 (543)
.++.++|++++++++|..+. +.+++|++++|.++.++. .|+++++|++|++++|.+..+ |.+|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 67899999999999998763 569999999999998864 799999999999999999977 7799
Q ss_pred hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCc---cCCcccccCCCcc
Q 009119 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS 163 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~---~i~~~~~~~~~L~ 163 (543)
..+++|++|++++|.++.+|..+. ++|++|++++|.+..++ ..+.++++|++|++++|.+. ..+..+..+++|+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 999999999999999998887664 79999999999999776 45889999999999999986 3456788999999
Q ss_pred EEEecCCcccccchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCC
Q 009119 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA 241 (543)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~ 241 (543)
.|++++|.+..++.... ++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++|.
T Consensus 175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 99999999988765432 7899999999999776 5678899999999999999987654 68889999999999999
Q ss_pred CCCCCccccCCCCCCEEeCCCCcccccchhhhc--------ceecEEEccCCCCCC---CChhhcCCCCCceeecCCCC
Q 009119 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP 309 (543)
Q Consensus 242 l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--------~~L~~L~l~~~~i~~---~~~~l~~~~~L~~L~l~~~~ 309 (543)
++.+|..+..+++|++|++++|.++.++...+. ..++.+++++|.+.. .|..+..+.+++.+++++|+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999999999999999999988776553 348899999998875 34568888999999998873
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-29 Score=239.48 Aligned_cols=286 Identities=22% Similarity=0.297 Sum_probs=212.2
Q ss_pred ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCC-CCCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCC
Q 009119 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (543)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~ 261 (543)
..++.++++++.+..+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 357778888887777776553 67888888888888664 4678888888888888888855 6678888888888888
Q ss_pred CCcccccchhhhcceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccc
Q 009119 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (543)
Q Consensus 262 ~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (543)
+|.++.++...+ ..|++|++++|.+..++. .+..+++|++|++++|.+...+.
T Consensus 111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------- 164 (332)
T 2ft3_A 111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF------------------------- 164 (332)
T ss_dssp SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-------------------------
T ss_pred CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-------------------------
Confidence 888887776555 568888888888888665 47889999999999987743210
Q ss_pred cccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH
Q 009119 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420 (543)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 420 (543)
.+..+... +|++|++++|.++.+|..+. ++|++|++++|.++++.+
T Consensus 165 -------------------------------~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 165 -------------------------------EPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp -------------------------------CTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT
T ss_pred -------------------------------CcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH
Confidence 11112222 67777777777777775443 678888888888887777
Q ss_pred HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhc---
Q 009119 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILR--- 496 (543)
Q Consensus 421 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~--- 496 (543)
..+..+++|++|++++|++.++....+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++.. +..
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 7777888888888888888877776778888888888888877743 44577788888888888888866543 222
Q ss_pred ---cCCCcEEeCCCCccc--cc-cccccCCCCCCeEeCCCCc
Q 009119 497 ---LQQLRILDLSQNSLQ--SI-PEGFKNLTSLTELDLSDNN 532 (543)
Q Consensus 497 ---~~~L~~L~l~~~~l~--~l-~~~l~~~~~L~~L~l~~~~ 532 (543)
.+.|+.|++++|.+. .+ |..+..+++|+.+++++|+
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 467899999999877 44 6778899999999999885
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5e-31 Score=262.96 Aligned_cols=289 Identities=18% Similarity=0.210 Sum_probs=203.5
Q ss_pred hhcCeeecCCCcccccchh-hhhcccccCCCCccccccCccEEEcCccccc-----cchHHhcCCCCCCEEEcCCCcCcc
Q 009119 9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE 82 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~~ 82 (543)
+.+++||++++++++.+.. ++.. +++|++|++++|.+. .++..+..+++|++|++++|.+.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 4678899999998865533 2443 678999999999988 456788899999999999998874
Q ss_pred c-chh-hhccC----CCCEEEcCCCCCC-----CCChhhcccCCccEEecCCCCcccc-----ccc-ccCCCCCCEEEcc
Q 009119 83 L-PAA-IGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-----PSS-LGRCLNLSDFKAS 145 (543)
Q Consensus 83 ~-~~~-~~~~~----~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~-----~~~-~~~~~~L~~L~l~ 145 (543)
. +.. +..++ +|++|++++|.+. .++..+..+++|++|++++|.+... ... ....++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 2 223 33344 6999999999887 3467788899999999999988732 112 2235689999999
Q ss_pred CCcCcc-----CCcccccCCCccEEEecCCcccccchhhhc-----ccccccEEECCCCcCCc-----CchhccCCCccc
Q 009119 146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI 210 (543)
Q Consensus 146 ~~~~~~-----i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~ 210 (543)
+|.++. ++..+..+++|++|++++|.+.......+. ..++|++|++++|.+.. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 998874 355677789999999999988755444333 25589999999998865 466677788999
Q ss_pred EEEccCCccccC------CCCCcCCCCCcEEEcCCCCCCC-----CCccccCCCCCCEEeCCCCcccccchhhhc-----
Q 009119 211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQ----- 274 (543)
Q Consensus 211 ~L~l~~~~~~~~------~~~~~~~~~L~~l~l~~~~l~~-----l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~----- 274 (543)
.|++++|.+... +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+++.......
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 999999877632 1222357888888888888885 566777788888888888887643332211
Q ss_pred --ceecEEEccCCCCCC-----CChhhcCCCCCceeecCCCC
Q 009119 275 --LRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNP 309 (543)
Q Consensus 275 --~~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~ 309 (543)
..|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 235555555554443 12233344444444444443
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-32 Score=274.24 Aligned_cols=368 Identities=20% Similarity=0.203 Sum_probs=200.4
Q ss_pred CCCCEEEcCCCCCCCC--ChhhcccCCccEEecCCCCcc-----cccccccCCCCCCEEEccCCcCccCCcccccCCCcc
Q 009119 91 HMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163 (543)
Q Consensus 91 ~~L~~L~l~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~ 163 (543)
++|++|+++++.++.. ...+..+++|++|++++|.+. .++..+..+++|++|++++|.+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~------------- 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG------------- 69 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-------------
Confidence 3456666666655522 122455566666666666555 23344444555555555555443
Q ss_pred EEEecCCcccccchhhh-cccc----cccEEECCCCcCC-----cCchhccCCCcccEEEccCCccccC-----CCC-Cc
Q 009119 164 KLDVEGNKLTVLSNNLI-ASWT----MLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRILSI-----PSS-IS 227 (543)
Q Consensus 164 ~L~l~~~~i~~~~~~~~-~~~~----~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~-~~ 227 (543)
......+ ..++ +|++|++++|.+. .++..+..+++|+.|++++|.+... ... ..
T Consensus 70 ----------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 70 ----------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp ----------HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred ----------hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 2221111 1122 3555555555443 2344555566666666666655421 011 12
Q ss_pred CCCCCcEEEcCCCCCCC-----CCccccCCCCCCEEeCCCCcccccchhhh-------cceecEEEccCCCCCC-----C
Q 009119 228 GCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----L 290 (543)
Q Consensus 228 ~~~~L~~l~l~~~~l~~-----l~~~l~~~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~l~~~~i~~-----~ 290 (543)
..++|++|++++|.++. ++..+..+++|++|++++|.+.+...... ...|++|++++|.++. +
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 24567777777776663 34456667888888888888765433322 2258888888887776 3
Q ss_pred ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC
Q 009119 291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (543)
Q Consensus 291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (543)
+..+..+++|++|++++|.+...... ......
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~------------------------------~l~~~~------------------ 251 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMA------------------------------ELCPGL------------------ 251 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHH------------------------------HHHHHH------------------
T ss_pred HHHHHhCCCccEEeccCCcCChHHHH------------------------------HHHHHH------------------
Confidence 55677788888888888876332100 000000
Q ss_pred CCChhhhccCCccEEEcCCCcCcc-----CChhhccCCCCceeecccCcCCCCCHHHhhC-----CCCCCEEEcCCCCCc
Q 009119 371 AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLR 440 (543)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-----~~~L~~L~L~~n~l~ 440 (543)
...+++|++|++++|.++. ++..+..+++|++|++++|.+++.....+.. .++|++|++++|.++
T Consensus 252 -----~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 252 -----LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp -----TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred -----hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 1124456666666665554 4444555666666666666655433322222 246666666666655
Q ss_pred ccCC----CccCCCCCccEEEccCCcCCCCCCCCCC-----CCCcCceeecCCCccc-----cCchhhhccCCCcEEeCC
Q 009119 441 QVPS----DGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLS 506 (543)
Q Consensus 441 ~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~ 506 (543)
.... ..+..+++|++|++++|.++......+. ..++|++|++++|.++ .++..+..+++|++|+++
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 4321 2234456666666666655443222111 2567777777777777 556666677777777777
Q ss_pred CCccccc-----cccc-cCCCCCCeEeCCCCcCC
Q 009119 507 QNSLQSI-----PEGF-KNLTSLTELDLSDNNIS 534 (543)
Q Consensus 507 ~~~l~~l-----~~~l-~~~~~L~~L~l~~~~~~ 534 (543)
+|+++.. .+.+ .....|+.|++.++.+.
T Consensus 407 ~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 7776632 1222 22346777777766554
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.3e-29 Score=236.45 Aligned_cols=190 Identities=26% Similarity=0.377 Sum_probs=95.1
Q ss_pred CccEEecCCCCcccccccccCCCCCCEEEccCCcCccCC-cccccCCCccEEEecCCcccccchhhhcccccccEEECCC
Q 009119 115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (543)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 193 (543)
+++.++++++.++.+|..+. +++++|++++|.+..++ ..+..+++|++|++++|.+..+....+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 34455555555544444332 34555555555554432 2455555555555555555555444455555555555555
Q ss_pred CcCCcCchhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCC---CCCccccCCCCCCEEeCCCCcccccc
Q 009119 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYC 269 (543)
Q Consensus 194 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~---~l~~~l~~~~~L~~L~l~~n~l~~~~ 269 (543)
|.+..+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.++ ..+..+..+ +|++|++++|.++.++
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 55555544333 556666666665555543 2455566666666666554 223344444 6666666666655544
Q ss_pred hhhhcceecEEEccCCCCCCCC-hhhcCCCCCceeecCCCCc
Q 009119 270 VEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPL 310 (543)
Q Consensus 270 ~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~ 310 (543)
.... ..|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 189 ~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 189 KDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp SSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred cccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 3322 23444444444444432 2344445555555554443
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.1e-29 Score=261.51 Aligned_cols=257 Identities=12% Similarity=0.067 Sum_probs=150.2
Q ss_pred EEEcCccccccchHHhcCCCCCCEEEcCCCcCc----c------------cchhhhccCCCCEEEcCCCCCCC-CChhhc
Q 009119 49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS----E------------LPAAIGELHMLKSLDVSFNSIMK-IPDEIG 111 (543)
Q Consensus 49 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~----~------------~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~ 111 (543)
.+.+..+.-...+..+..+++|++|+++++... . ++.....+++|++|+++++.+.. .+..+.
T Consensus 54 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 133 (592)
T 3ogk_B 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133 (592)
T ss_dssp EEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred EEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHH
Confidence 344444322233345667777888887664321 1 11122367788888888776552 233343
Q ss_pred c-cCC-ccEEecCCCC-cc--cccccccCCCCCCEEEccCCcCccC-----CcccccCCCccEEEecCCcccccc----h
Q 009119 112 S-ATA-LVKFDCSSNQ-LK--ELPSSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTVLS----N 177 (543)
Q Consensus 112 ~-~~~-L~~L~l~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~~i-----~~~~~~~~~L~~L~l~~~~i~~~~----~ 177 (543)
. +++ |++|++++|. +. .++....++++|++|++++|.+... +.....+++|+.|+++++.+..+. .
T Consensus 134 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 213 (592)
T 3ogk_B 134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213 (592)
T ss_dssp HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence 3 333 8888887765 22 2233344677888888887766532 223456778888888877765222 2
Q ss_pred hhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccc----cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCC
Q 009119 178 NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLS 253 (543)
Q Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~ 253 (543)
..+..+++|++|+++++.+..++..+..+++|+.|+++..... ..+..+..+++|+.+.++++....++..+..++
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence 2245667788888888777777777777788888888753221 223455667777777777765556666677777
Q ss_pred CCCEEeCCCCcccccchh---hhcceecEEEccCCCCCC--CChhhcCCCCCceeecC
Q 009119 254 KLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLT 306 (543)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~---~~~~~L~~L~l~~~~i~~--~~~~l~~~~~L~~L~l~ 306 (543)
+|++|++++|.++..... ....+|++|++++ .+.+ ++.....+++|++|+++
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEee
Confidence 777777777775432221 1123355555552 2222 22223445566666665
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.1e-26 Score=233.27 Aligned_cols=260 Identities=30% Similarity=0.365 Sum_probs=231.4
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 88 (543)
..++.|+|++++++++|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence 458899999999999998774 469999999999999977 68999999999999999887
Q ss_pred ccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEec
Q 009119 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~ 168 (543)
.+++|++|++++|.++.+|. .+++|+.|++++|.++.+|.. +++|++|++++|.++.++. ..++|+.|+++
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY 169 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence 78999999999999998877 678999999999999998864 4899999999999998875 35789999999
Q ss_pred CCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCcc
Q 009119 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (543)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~ 248 (543)
+|.+..++ ..+++|+.|++++|.+..+|.. .++|+.|++++|.+..+|.. .++|+.|++++|.++.+|
T Consensus 170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence 99999877 4568999999999999988753 47899999999999988754 488999999999999988
Q ss_pred ccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcc
Q 009119 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (543)
Q Consensus 249 l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~ 313 (543)
..+++|+.|++++|.++.++. ...+|++|++++|.++.+|..+.++++|+.|++++|++...
T Consensus 238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 456899999999999998877 45669999999999999999999999999999999998643
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.9e-29 Score=259.76 Aligned_cols=426 Identities=16% Similarity=0.093 Sum_probs=278.7
Q ss_pred CEEEcCCCcCcccchhhhccCCCCEEEcCCCCCC----CCCh------------hhcccCCccEEecCCCCccc-ccccc
Q 009119 71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM----KIPD------------EIGSATALVKFDCSSNQLKE-LPSSL 133 (543)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~----~l~~------------~~~~~~~L~~L~l~~~~~~~-~~~~~ 133 (543)
+.+.+.++.-...+..+..+++|++|+++++... .+|. ....+++|++|++++|.++. .+..+
T Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l 132 (592)
T 3ogk_B 53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132 (592)
T ss_dssp CEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred cEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence 3455554422233446778999999999886421 1121 12378999999999998773 23334
Q ss_pred cC-CC-CCCEEEccCCcC-c--cCCcccccCCCccEEEecCCcccccc----hhhhcccccccEEECCCCcCCc-----C
Q 009119 134 GR-CL-NLSDFKASNNCI-T--SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG-----M 199 (543)
Q Consensus 134 ~~-~~-~L~~L~l~~~~~-~--~i~~~~~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~ 199 (543)
.. ++ +|++|++++|.. . .++.....+++|++|++++|.+.... ......+++|++|+++++.+.. +
T Consensus 133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 33 34 499999998862 2 23333457899999999999876442 2235677899999999998862 3
Q ss_pred chhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC----CCCccccCCCCCCEEeCCCCcccccchhhh-c
Q 009119 200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEAC-Q 274 (543)
Q Consensus 200 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~ 274 (543)
+..+..+++|+.|++++|.+..++..+..+++|+++.+++.... ..+..+..+++|+.+++.++....++.... .
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 44566789999999999988888877888999999999754222 344567778899999998875555554432 3
Q ss_pred ceecEEEccCCCCCC--CChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhh
Q 009119 275 LRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (543)
Q Consensus 275 ~~L~~L~l~~~~i~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (543)
.+|++|++++|.+++ +...+..+++|++|++.. .+. .......
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~----------------------------------~~~l~~~ 337 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIG----------------------------------DRGLEVL 337 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGH----------------------------------HHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccC----------------------------------HHHHHHH
Confidence 459999999988665 233467888999998872 221 1112222
Q ss_pred hhcccccceeeeCC----------C-CCC--CCChhhhccCCccEEEcCCCcCcc-CChhhc-cCCCCceeecc----cC
Q 009119 353 TRLSVTSKELSLEG----------M-NLS--AIPSEIWEAGEITKLDLSRNSIQE-LPPELS-SCASLQTLILS----RN 413 (543)
Q Consensus 353 ~~~~~~l~~l~l~~----------~-~~~--~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~-~~~~L~~L~l~----~~ 413 (543)
....++++++++.+ + .++ .+......+++|++|+++.+.+++ .+..+. .+++|+.|+++ .+
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 23346788888883 2 333 223334457888888887766665 223333 37788888886 45
Q ss_pred cCCCCC-----HHHhhCCCCCCEEEcCCCC--CcccCCCcc-CCCCCccEEEccCCcCCCCC-CCCCCCCCcCceeecCC
Q 009119 414 KIKDWP-----DAILTSLSSLSCLKLDNNP--LRQVPSDGF-KDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRR 484 (543)
Q Consensus 414 ~i~~~~-----~~~l~~~~~L~~L~L~~n~--l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~ 484 (543)
.+++.+ ...+.++++|++|++++|. +++.....+ ..+++|++|++++|.+++.. ...+..+++|++|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 676642 2335668888888887654 443222222 34778888888888765422 22235678888888888
Q ss_pred Cccc--cCchhhhccCCCcEEeCCCCccccc--cccccCCCCCCeEeCCCC
Q 009119 485 MQLR--EAPTDILRLQQLRILDLSQNSLQSI--PEGFKNLTSLTELDLSDN 531 (543)
Q Consensus 485 ~~l~--~l~~~~~~~~~L~~L~l~~~~l~~l--~~~l~~~~~L~~L~l~~~ 531 (543)
|.++ .++.....+++|++|++++|+++.. ......+|.+....+..+
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8876 2444456678888888888887632 233346676666555543
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=7.9e-26 Score=229.07 Aligned_cols=258 Identities=24% Similarity=0.254 Sum_probs=174.7
Q ss_pred cccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCc
Q 009119 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264 (543)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~ 264 (543)
.++.++++++.++.+|..+. ++|+.|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 46777777777777766544 677777777777776665 45677777777777776665 55777777777777
Q ss_pred ccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccc
Q 009119 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (543)
Q Consensus 265 l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (543)
++.++. ....|++|++++|.++.+|.. +++|++|++++|.+..++.
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----------------------------- 158 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----------------------------- 158 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC-----------------------------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC-----------------------------
Confidence 776655 334577777777777776653 3677777777777654431
Q ss_pred hhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhh
Q 009119 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424 (543)
Q Consensus 345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 424 (543)
...+++.+++++|.++.++ ..+++|+.|++++|.++.+|.. .++|+.|++++|.++.++.
T Consensus 159 ----------~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---- 218 (622)
T 3g06_A 159 ----------LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---- 218 (622)
T ss_dssp ----------CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----
T ss_pred ----------ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----
Confidence 1134566666666666665 3356777777777777776642 3667777777777776552
Q ss_pred CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEe
Q 009119 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504 (543)
Q Consensus 425 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ 504 (543)
.+++|+.|++++|.++.++ ..+++|++|++++|.+..+.. .+++|+.|++++|+++.+|..+..+++|+.|+
T Consensus 219 ~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence 3467777777777777655 345677777777777765432 55677777777777777777777777777777
Q ss_pred CCCCcccc
Q 009119 505 LSQNSLQS 512 (543)
Q Consensus 505 l~~~~l~~ 512 (543)
+++|.+..
T Consensus 291 L~~N~l~~ 298 (622)
T 3g06_A 291 LEGNPLSE 298 (622)
T ss_dssp CCSCCCCH
T ss_pred ecCCCCCC
Confidence 77777663
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5e-26 Score=213.46 Aligned_cols=240 Identities=23% Similarity=0.271 Sum_probs=182.4
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCccc---chhh
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI 87 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~---~~~~ 87 (543)
+.++|++++++++|..++ +++++|++++|.++.++. .|+++++|++|++++|.+..+ +.++
T Consensus 10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 578999999999998773 469999999999998875 578999999999999988755 5677
Q ss_pred hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccc--cccCCCCCCEEEccCCcCccC-CcccccCCCccE
Q 009119 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSK 164 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~ 164 (543)
..+++|++|++++|.+..++..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+ +..+..+++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 78899999999999988888888889999999999998887763 677888888888888887743 455777888888
Q ss_pred EEecCCcccc-cchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCC
Q 009119 165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA 241 (543)
Q Consensus 165 L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~ 241 (543)
|++++|.+.. .....+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 8888887764 3334466677777777777777655 4456667777777777777766543 45566777777777776
Q ss_pred CCC-CCccccCCC-CCCEEeCCCCccc
Q 009119 242 LSA-LPAELGKLS-KLGTLDLHSNQLK 266 (543)
Q Consensus 242 l~~-l~~~l~~~~-~L~~L~l~~n~l~ 266 (543)
+.. .+..+..++ +|++|++++|.+.
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CcccCHHHHHhhhccCCEEEccCCCee
Confidence 663 344555553 6777777766654
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.2e-26 Score=217.68 Aligned_cols=241 Identities=26% Similarity=0.339 Sum_probs=210.1
Q ss_pred cCccEEEcCccccc---cchHHhcCCCCCCEEEcCC-CcCc-ccchhhhccCCCCEEEcCCCCCC-CCChhhcccCCccE
Q 009119 45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (543)
Q Consensus 45 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~ 118 (543)
.+++.|+++++.+. .+|..|.++++|++|++++ |.+. .+|..|.++++|++|++++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999988 5788999999999999995 7776 67889999999999999999988 78888999999999
Q ss_pred EecCCCCcc-cccccccCCCCCCEEEccCCcCc-cCCcccccCC-CccEEEecCCcccccchhhhcccccccEEECCCCc
Q 009119 119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (543)
Q Consensus 119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 195 (543)
|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|+.|++++|.+.......+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 78888999999999999999998 7888899988 999999999998865555577776 9999999999
Q ss_pred CC-cCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC-CCCccccCCCCCCEEeCCCCccc-ccchhh
Q 009119 196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA 272 (543)
Q Consensus 196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~ 272 (543)
+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|.++..+++|++|++++|.++ .++...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 86 4566788999999999999999866666788899999999999998 78889999999999999999998 455543
Q ss_pred hcceecEEEccCCC
Q 009119 273 CQLRLSVLDLSNNS 286 (543)
Q Consensus 273 ~~~~L~~L~l~~~~ 286 (543)
....++.+++++|.
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 34458888888885
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=219.97 Aligned_cols=264 Identities=21% Similarity=0.293 Sum_probs=189.4
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AAIG 88 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~ 88 (543)
....++++++++++|..++ ++|++|++++|.++.++. .|.++++|++|++++|.+..++ .+|.
T Consensus 33 ~~~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CeEeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence 3457888888888887763 458888888888887764 7888888888888888888664 4788
Q ss_pred ccCCCCEEEcCCCCCCCCChh-hcccCCccEEecCCCCcccccc--cccCCCCCCEEEccCC-cCccC-CcccccCCCcc
Q 009119 89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSKMS 163 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~i-~~~~~~~~~L~ 163 (543)
++++|++|++++|.++.++.. +.++++|++|++++|.++.+|. .+.++++|++|++++| .+..+ +..+..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 888888888888888877765 7788888888888888887775 6778888888888887 45554 45677788888
Q ss_pred EEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc-cCCCcccEEEccCCccccCCCC----CcCCCCCcEEEcC
Q 009119 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSS----ISGCCSLAEFYMG 238 (543)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~l~l~ 238 (543)
+|++++|.+..+....+..+++|++|++++|.+..++..+ ..+++|+.|++++|.+..++.. ......++.+++.
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 8888888887776666777888888888888877666543 3467788888888777654321 1123344444444
Q ss_pred CCCCC-----CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChh-hcCCCCCceeecCCCCcC
Q 009119 239 NNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLR 311 (543)
Q Consensus 239 ~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~-l~~~~~L~~L~l~~~~~~ 311 (543)
++.+. .+|.++..+++ |++|++++|.++.+|.. +..+++|++|++++|++.
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~----------------------L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISG----------------------LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTT----------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccCcchhhhHHHHhcccC----------------------CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 44433 12333444444 55555555555555555 477888888888888764
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3e-26 Score=214.95 Aligned_cols=241 Identities=22% Similarity=0.324 Sum_probs=202.4
Q ss_pred CCCCEEEcCCCcCc---ccchhhhccCCCCEEEcCC-CCCC-CCChhhcccCCccEEecCCCCcc-cccccccCCCCCCE
Q 009119 68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD 141 (543)
Q Consensus 68 ~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~ 141 (543)
.++++|+++++.+. .+|.++.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999988 4788999999999999994 7766 77888999999999999999998 78888999999999
Q ss_pred EEccCCcCc-cCCcccccCCCccEEEecCCcccccchhhhcccc-cccEEECCCCcCC-cCchhccCCCcccEEEccCCc
Q 009119 142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR 218 (543)
Q Consensus 142 L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 218 (543)
|++++|.+. .+|..+..+++|++|++++|.+.......+..++ .|++|++++|.+. .+|..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 6788899999999999999998844444477776 8999999999986 6777777776 9999999998
Q ss_pred cc-cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc-ccchhhhc-ceecEEEccCCCCCC-CChhh
Q 009119 219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ-LRLSVLDLSNNSLSG-LPPEI 294 (543)
Q Consensus 219 ~~-~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~-~~L~~L~l~~~~i~~-~~~~l 294 (543)
+. ..|..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .++..... ..|++|++++|.+++ +|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 88 4456778899999999999998866666888899999999999998 44443333 349999999999886 5554
Q ss_pred cCCCCCceeecCCCCc
Q 009119 295 GKMTTLRKLLLTGNPL 310 (543)
Q Consensus 295 ~~~~~L~~L~l~~~~~ 310 (543)
.++++|+.+++++|+.
T Consensus 288 ~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TTGGGSCGGGTCSSSE
T ss_pred ccccccChHHhcCCCC
Confidence 7888999999999873
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.1e-25 Score=212.38 Aligned_cols=223 Identities=21% Similarity=0.270 Sum_probs=186.9
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
.++++.|+++++.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 36788999999998888888888999999999999888888888889999999999998888888888899999999988
Q ss_pred CCcc-ccccccc---------CCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCC
Q 009119 124 NQLK-ELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (543)
Q Consensus 124 ~~~~-~~~~~~~---------~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 193 (543)
|.+. .+|..+. ++++|++|++++|.++.+|..+..+++|++|++++|.+..+... +..+++|++|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcC
Confidence 6544 6666554 48899999999998888888888899999999999988877664 78888899999998
Q ss_pred CcC-CcCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCCCCC-CCCccccCCCCCCEEeCCCCcccc
Q 009119 194 NLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE 267 (543)
Q Consensus 194 ~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~~ 267 (543)
|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++++.+++..+.+..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 776 567777888899999999987544 67778888999999999987655 788889999999999888776553
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.4e-28 Score=251.84 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=88.2
Q ss_pred ccccceeeeCCCCCCC-CChhh-hccCCccEEEcC--C----CcCccCC------hhhccCCCCceeecccCcCCCCCHH
Q 009119 356 SVTSKELSLEGMNLSA-IPSEI-WEAGEITKLDLS--R----NSIQELP------PELSSCASLQTLILSRNKIKDWPDA 421 (543)
Q Consensus 356 ~~~l~~l~l~~~~~~~-~~~~~-~~~~~L~~L~l~--~----~~l~~l~------~~~~~~~~L~~L~l~~~~i~~~~~~ 421 (543)
.++++.+.+..+.++. ....+ ..+++|+.|+++ + +.++..| ..+..+++|+.|++++ .+++....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 3556666555555542 11222 246777777777 3 3455332 2255677788888866 55554444
Q ss_pred HhhC-CCCCCEEEcCCCCCcccCCCcc-CCCCCccEEEccCCcCCCCCCC-CCCCCCcCceeecCCCcccc-Cchhh-hc
Q 009119 422 ILTS-LSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLRRMQLRE-APTDI-LR 496 (543)
Q Consensus 422 ~l~~-~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-l~~~~-~~ 496 (543)
.+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.++..... ....+++|++|++++|.++. ....+ ..
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 4444 7778888888877765433333 4577788888887776432221 23456788888888887751 11122 44
Q ss_pred cCCCcEEeCCCC
Q 009119 497 LQQLRILDLSQN 508 (543)
Q Consensus 497 ~~~L~~L~l~~~ 508 (543)
++.|+...+.++
T Consensus 530 lp~l~i~~~~~~ 541 (594)
T 2p1m_B 530 MPKLNVEVIDER 541 (594)
T ss_dssp CTTEEEEEECSS
T ss_pred CCCCEEEEecCC
Confidence 667766666554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=6.6e-26 Score=217.06 Aligned_cols=272 Identities=21% Similarity=0.280 Sum_probs=149.1
Q ss_pred ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCC
Q 009119 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (543)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~ 261 (543)
+.....+.+++.++.+|..+. ++|+.|++++|.+..++. .+..+++|+.|++++|.++.+ +..+..+++|++|+++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 333445555555555555433 356666666665555543 455555555555555555543 2345555555555555
Q ss_pred CCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccc
Q 009119 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 341 (543)
Q Consensus 262 ~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (543)
+|.++.++... +.++++|++|++++|.+..++..
T Consensus 109 ~n~l~~~~~~~---------------------~~~l~~L~~L~L~~n~l~~l~~~------------------------- 142 (353)
T 2z80_A 109 YNYLSNLSSSW---------------------FKPLSSLTFLNLLGNPYKTLGET------------------------- 142 (353)
T ss_dssp SSCCSSCCHHH---------------------HTTCTTCSEEECTTCCCSSSCSS-------------------------
T ss_pred CCcCCcCCHhH---------------------hCCCccCCEEECCCCCCcccCch-------------------------
Confidence 55554433321 44555555555555544332210
Q ss_pred ccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCc-CccC-ChhhccCCCCceeecccCcCCCCC
Q 009119 342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQEL-PPELSSCASLQTLILSRNKIKDWP 419 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l-~~~~~~~~~L~~L~l~~~~i~~~~ 419 (543)
..+..+++|++|++++|. ++.+ +..+..+++|++|++++|.+++..
T Consensus 143 --------------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 143 --------------------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp --------------------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred --------------------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 012223445555555442 3333 233445555555555555555544
Q ss_pred HHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCC---CCCCCcCceeecCCCccc-----cCc
Q 009119 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPP---FSSLPHLQELYLRRMQLR-----EAP 491 (543)
Q Consensus 420 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~L~~L~l~~~~l~-----~l~ 491 (543)
+..+..+++|++|++++|.+..++...+..+++|++|++++|.+....... ....+.++.++++++.+. .+|
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 444555555555555555554444333344555555555555554432221 123455666666666555 466
Q ss_pred hhhhccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCCc
Q 009119 492 TDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 535 (543)
Q Consensus 492 ~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~ 535 (543)
..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++..
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 7777888888888888888888765 4788888888888888764
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6.7e-26 Score=213.75 Aligned_cols=224 Identities=21% Similarity=0.322 Sum_probs=201.5
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 88 (543)
+.+++|++++++++.+|..+.. +++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 6889999999999999988755 678999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEcCCCC-CCCCChhhc---------ccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCccccc
Q 009119 89 ELHMLKSLDVSFNS-IMKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (543)
Q Consensus 89 ~~~~L~~L~l~~~~-~~~l~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~ 158 (543)
.+++|++|++++|. ...+|..+. .+++|++|++++|.++.+|..+.++++|++|++++|.+..++..+..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 99999999999976 446776665 49999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEecCCcccccchhhhcccccccEEECCCCcC-CcCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEE
Q 009119 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY 236 (543)
Q Consensus 159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~ 236 (543)
+++|++|++++|.+.......+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++++.+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 99999999999887766666688999999999999776 678888999999999999997655 7899999999999999
Q ss_pred cCCCCCCCC
Q 009119 237 MGNNALSAL 245 (543)
Q Consensus 237 l~~~~l~~l 245 (543)
+..+.+..+
T Consensus 308 l~~~~~~~l 316 (328)
T 4fcg_A 308 VPPHLQAQL 316 (328)
T ss_dssp CCGGGSCC-
T ss_pred CCHHHHHHH
Confidence 987655543
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-25 Score=210.25 Aligned_cols=221 Identities=20% Similarity=0.241 Sum_probs=182.9
Q ss_pred ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCC---ChhhcccCCccEEecC
Q 009119 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCS 122 (543)
Q Consensus 47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~ 122 (543)
-+.++++++.++.+|..+. +++++|++++|.+..+|. .|.++++|++|++++|.+..+ +..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3689999999999987554 789999999999998876 578999999999999998854 5677789999999999
Q ss_pred CCCcccccccccCCCCCCEEEccCCcCccCCc--ccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCc--
Q 009119 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-- 198 (543)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-- 198 (543)
+|.+..+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+....+..+++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99999988888999999999999999987754 68888999999999998887777778888888888888888764
Q ss_pred CchhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCCCCc-cccCCCCCCEEeCCCCcccccc
Q 009119 199 MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC 269 (543)
Q Consensus 199 ~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~ 269 (543)
++..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|++|++++|.+....
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 666777888888888888888765 5567778888888888888876644 5677788888888877776543
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.1e-28 Score=250.91 Aligned_cols=429 Identities=14% Similarity=0.154 Sum_probs=262.8
Q ss_pred ccEEEcCccccccchHHhcCCCCCCEEEcCCCc-Cccc---------------chhhhccCCCCEEEcCCCCCCC-CChh
Q 009119 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-LSEL---------------PAAIGELHMLKSLDVSFNSIMK-IPDE 109 (543)
Q Consensus 47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-l~~~---------------~~~~~~~~~L~~L~l~~~~~~~-l~~~ 109 (543)
.+.++++.+....-...+..+++|++|+++++. +.++ +.....+++|++|+++++.+.. .+..
T Consensus 45 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 45 RRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred ceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 456777666544434567889999999999875 2211 1234578899999999888762 2334
Q ss_pred hc-ccCCccEEecCCC-Cccc--ccccccCCCCCCEEEccCCcCcc-----CCcccccCCCccEEEecCCcccccchhh-
Q 009119 110 IG-SATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL- 179 (543)
Q Consensus 110 ~~-~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~-----i~~~~~~~~~L~~L~l~~~~i~~~~~~~- 179 (543)
+. .+++|++|++++| .+.. ++....++++|++|++++|.+.. ++.....+++|+.|+++++. ..+....
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence 43 6889999999888 4543 44555678899999999888663 22233467789999988876 2222222
Q ss_pred ---hcccccccEEECCCC-cCCcCchhccCCCcccEEEccCCc-------cccCCCCCcCCCCCcEE-EcCCCCCCCCCc
Q 009119 180 ---IASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQNR-------ILSIPSSISGCCSLAEF-YMGNNALSALPA 247 (543)
Q Consensus 180 ---~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~l-~l~~~~l~~l~~ 247 (543)
...+++|++|++++| .+..++..+..+++|+.|+++.+. +..++..+..+++|+.+ .+.+.....++.
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 234578888888877 334566666777888888866543 22333345566666666 333333233444
Q ss_pred cccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHH
Q 009119 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (543)
Q Consensus 248 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 327 (543)
.+..+++|++|++++|.++... +...+..+++|++|++++| +..
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~--------------------l~~~~~~~~~L~~L~l~~~-~~~--------------- 327 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYD--------------------LVKLLCQCPKLQRLWVLDY-IED--------------- 327 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHH--------------------HHHHHTTCTTCCEEEEEGG-GHH---------------
T ss_pred HHHhhCCCCEEEccCCCCCHHH--------------------HHHHHhcCCCcCEEeCcCc-cCH---------------
Confidence 4445566666666666544211 1112334555555555544 100
Q ss_pred HHhccCCCCcccccccchhhHHHhhhhcccccceeeeCC---------CCCC--CCChhhhccCCccEEEcCCCcCccC-
Q 009119 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG---------MNLS--AIPSEIWEAGEITKLDLSRNSIQEL- 395 (543)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~--~~~~~~~~~~~L~~L~l~~~~l~~l- 395 (543)
..........++++++++.+ +.++ .+......+++|+.|.+..+.+++.
T Consensus 328 -------------------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 328 -------------------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp -------------------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred -------------------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 00111111234455555522 1222 1112223478999998887777762
Q ss_pred Chhh-ccCCCCceeecc--c----CcCCCCCH-----HHhhCCCCCCEEEcCCCCCcccCCCccCC-CCCccEEEccCCc
Q 009119 396 PPEL-SSCASLQTLILS--R----NKIKDWPD-----AILTSLSSLSCLKLDNNPLRQVPSDGFKD-IPMLQILDLSYNI 462 (543)
Q Consensus 396 ~~~~-~~~~~L~~L~l~--~----~~i~~~~~-----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~ 462 (543)
...+ ..+++|+.|+++ + +.+++.+. ..+..+++|++|++++ .+++.....+.. +++|++|++++|.
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 2223 358899999998 3 46664332 2356789999999977 555543333433 7889999999988
Q ss_pred CCCCCCCCC-CCCCcCceeecCCCcccc--CchhhhccCCCcEEeCCCCccccc-cccc-cCCCCCCeEeCCCCc
Q 009119 463 ASLPENPPF-SSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQSI-PEGF-KNLTSLTELDLSDNN 532 (543)
Q Consensus 463 ~~~~~~~~~-~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~l-~~~l-~~~~~L~~L~l~~~~ 532 (543)
+++.....+ ..+++|++|++++|.++. +......+++|+.|++++|+++.- ...+ ..+|.|+...+..+.
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 755433333 568999999999998862 223445688999999999987521 1223 567888776666553
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.7e-25 Score=207.46 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=152.7
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~ 89 (543)
+.++|++++++++|..+ .+++++|+++++.+..++ ..|..+++|++|++++|.+..+ +.+|..
T Consensus 14 ~~~~c~~~~l~~ip~~~---------------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---------------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCTTC---------------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eEEEcCcCCcccCCcCC---------------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 56889888899888766 346889999998888776 5688888899999988888866 567888
Q ss_pred cCCCCEEEcCCCC-CCCC-ChhhcccCCccEEecCCCCcccc-cccccCCCCCCEEEccCCcCccCCcc-cccCCCccEE
Q 009119 90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL 165 (543)
Q Consensus 90 ~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L 165 (543)
+++|++|++++|. +..+ +..+..+++|++|++++|.+..+ +..+.++++|++|++++|.+..++.. +..+++|+.|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 8888888888886 7766 55677888888888888887765 35566777777777777777765433 5566666666
Q ss_pred EecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCC
Q 009119 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSA 244 (543)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~ 244 (543)
++++|.+..+....+.. +++|+.|++++|.+..+ |..+..+++|+.|++++|.++.
T Consensus 159 ~l~~n~l~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRG-----------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp ECCSSCCCEECTTTTTT-----------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcccccCHHHhcC-----------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 66666665555444444 44555555555555433 4455556666666666666665
Q ss_pred CCc-cccCCCCCCEEeCCCCccc
Q 009119 245 LPA-ELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 245 l~~-~l~~~~~L~~L~l~~n~l~ 266 (543)
++. .+..+++|+.|++++|.+.
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCHHHcccCcccCEEeccCCCcc
Confidence 543 4666777777777777665
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=213.07 Aligned_cols=239 Identities=24% Similarity=0.356 Sum_probs=182.5
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~ 88 (543)
.+.++|++.+++++|..+. ++++.|+|++|.+..++ ..|.++++|++|++++|.+..++ .+|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS---------------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC---------------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred CCEEEeCCCCcCcCCCCCC---------------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 4578888888888888774 45888888888888775 67888888888888888888764 4788
Q ss_pred ccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCC-cCccCCc-ccccCCCccE
Q 009119 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK 164 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~i~~-~~~~~~~L~~ 164 (543)
.+++|++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 88888888888888887765 57788888888888888887663 6778888888888874 4444443 5777888888
Q ss_pred EEecCCcccccchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCC
Q 009119 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL 242 (543)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l 242 (543)
|++++|.+..++. +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 190 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 8888888777664 67777788888888877665 45677778888888888877755 34567777888888888877
Q ss_pred CCCCc-cccCCCCCCEEeCCCCccc
Q 009119 243 SALPA-ELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 243 ~~l~~-~l~~~~~L~~L~l~~n~l~ 266 (543)
+.++. .+..+++|+.|++++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 76654 4566777888887777654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3e-24 Score=212.64 Aligned_cols=239 Identities=24% Similarity=0.338 Sum_probs=194.0
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~ 88 (543)
.+.++|++.+++++|..+. +++++|++++|.+..+ +..|.++++|++|++++|.+..++ .+|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence 3578899999999997773 4689999999999877 467899999999999999888764 5888
Q ss_pred ccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCC-cCccCCc-ccccCCCccE
Q 009119 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK 164 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~i~~-~~~~~~~L~~ 164 (543)
.+++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+.++++|++|+++++ .+..++. .+..+++|+.
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 89999999999999887765 47788999999999999887764 6788889999999884 4555543 4778888999
Q ss_pred EEecCCcccccchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCC
Q 009119 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL 242 (543)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l 242 (543)
|++++|.+..++. +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 201 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 201 LNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp EECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 9999888887754 77788888899988888765 55688888888888888888855 45677888888888888888
Q ss_pred CCCCc-cccCCCCCCEEeCCCCccc
Q 009119 243 SALPA-ELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 243 ~~l~~-~l~~~~~L~~L~l~~n~l~ 266 (543)
+.++. .+..+++|+.|++++|.+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccChHHhccccCCCEEEccCCCcC
Confidence 87654 4677888888888888765
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.7e-24 Score=200.65 Aligned_cols=219 Identities=23% Similarity=0.308 Sum_probs=154.1
Q ss_pred CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCC
Q 009119 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (543)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 123 (543)
.-++++++++.++.+|..+ .+++++|++++|.+..++. +|..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus 12 ~~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 12 PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SSCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 3467777777777776543 3577777777777776653 567777777777777776654 45566667777777766
Q ss_pred CC-cccc-cccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch
Q 009119 124 NQ-LKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (543)
Q Consensus 124 ~~-~~~~-~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (543)
|. +..+ +..+..+++|++|++++|.+. .+....+..+++|++|++++|.+..++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-----------------------ELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCC-----------------------EECHhHhhCCcCCCEEECCCCcccccCH
Confidence 65 5544 344555555555555555554 4333334455555555555555555443
Q ss_pred -hccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhc--ce
Q 009119 202 -TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LR 276 (543)
Q Consensus 202 -~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~ 276 (543)
.+..+++|+.|++++|.+..++. .+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++.++...+. ..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 36677888888888888887765 478899999999999999965 77899999999999999999988765443 45
Q ss_pred ecEEEccCCCCCC
Q 009119 277 LSVLDLSNNSLSG 289 (543)
Q Consensus 277 L~~L~l~~~~i~~ 289 (543)
|+++++++|.+..
T Consensus 227 L~~L~l~~N~~~c 239 (285)
T 1ozn_A 227 LQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEeccCCCccC
Confidence 9999999998875
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.5e-25 Score=210.37 Aligned_cols=238 Identities=16% Similarity=0.168 Sum_probs=118.2
Q ss_pred hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccc--cchHHhc-------CCCCCCEEEcCCCcC
Q 009119 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLR-------NLPLLTVLNVSHNKL 80 (543)
Q Consensus 10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~l 80 (543)
.+++++++++.+ .+|..++.. ++.|+++++.+. .++..+. ++++|++|++++|.+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~---------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI---------------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH---------------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred CceeEeeccccc-ccHHHHHHH---------------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence 344555555555 555555432 555555555553 2333332 455555555555555
Q ss_pred c-ccchhh--hccCCCCEEEcCCCCCCCCChhhccc-----CCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCcc
Q 009119 81 S-ELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSA-----TALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS 151 (543)
Q Consensus 81 ~-~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 151 (543)
. .+|..+ ..+++|++|++++|.+...|..+..+ ++|++|++++|.+..++ ..+.++++|++|++++|.+..
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 5 344433 55555555555555555445444444 55555555555555444 445555555555555555431
Q ss_pred ---CCccc--ccCCCccEEEecCCcccc---cchhhhcccccccEEECCCCcCCcCc--hhccCCCcccEEEccCCcccc
Q 009119 152 ---LPEDL--ADCSKMSKLDVEGNKLTV---LSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILS 221 (543)
Q Consensus 152 ---i~~~~--~~~~~L~~L~l~~~~i~~---~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~ 221 (543)
++..+ ..+++|++|++++|.+.. +....+..+++|++|++++|.+...+ ..+..+++|+.|++++|.++.
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 11222 445555555555555542 22222334455555555555554432 223334555555555555555
Q ss_pred CCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc
Q 009119 222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 222 ~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~ 266 (543)
+|..+. ++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 544443 455555555555554443 444555555555555443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=8.5e-25 Score=205.66 Aligned_cols=236 Identities=22% Similarity=0.278 Sum_probs=172.7
Q ss_pred cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhc
Q 009119 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (543)
Q Consensus 11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 89 (543)
++..+++.+.+.+++..+++. +++|++|++++|.+..++ ..|..+++|++|++++|.+..+++ +..
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 78 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES 78 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred eeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence 344566666666666666554 567888888888888764 678888888888888888876554 778
Q ss_pred cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCC-cccccCCCccEEEec
Q 009119 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVE 168 (543)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~ 168 (543)
+++|++|++++|.+..++ ..++|++|++++|.++.++.. .+++|++|++++|.+..++ ..+..+++|+.|+++
T Consensus 79 l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 888888888888777654 347888888888888766532 3567888888888887663 356777888888888
Q ss_pred CCcccccchhhh-cccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc
Q 009119 169 GNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (543)
Q Consensus 169 ~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~ 247 (543)
+|.+..+....+ ..+++|++|++++|.+..++.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.++.+|.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 888776655444 3567788888888877766543 24677788888877777777667777777777777777777777
Q ss_pred cccCCCCCCEEeCCCCccc
Q 009119 248 ELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 248 ~l~~~~~L~~L~l~~n~l~ 266 (543)
.+..+++|+.|++++|.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCCCCTTCCEEECTTCCCB
T ss_pred HhhcCCCCCEEEccCCCcc
Confidence 7777777777777777765
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=207.49 Aligned_cols=241 Identities=22% Similarity=0.353 Sum_probs=169.6
Q ss_pred ccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhc--ceecEEEccCC
Q 009119 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN 285 (543)
Q Consensus 209 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~~ 285 (543)
...++..+..+..+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|.+..+....+. ..|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5677777777878877653 67888888888888554 5677888888888888888776654433 33666666666
Q ss_pred CCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeee
Q 009119 286 SLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (543)
Q Consensus 286 ~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (543)
.++.++. .+..+++|++|++++|.+..++.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------------------------------------------------- 153 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPS------------------------------------------------- 153 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECT-------------------------------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCH-------------------------------------------------
Confidence 6666544 35566666666666665543321
Q ss_pred CCCCCCCCChhhhccCCccEEEcCCCc-CccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCccc
Q 009119 365 EGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442 (543)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~ 442 (543)
..+..+++|++|++++|. +..++. .+..+++|+.|++++|.+++++. +..+++|++|++++|.++++
T Consensus 154 ---------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 154 ---------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp ---------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEE
T ss_pred ---------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCcc
Confidence 123346677888887743 455543 46777888888888888777653 57778888888888888777
Q ss_pred CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
....|..+++|++|++++|.+....+..|..+++|++|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777777888888888888887777777777788888888888887766544 456778888888887765
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.4e-23 Score=207.79 Aligned_cols=241 Identities=24% Similarity=0.360 Sum_probs=153.7
Q ss_pred ccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhc--ceecEEEccCC
Q 009119 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN 285 (543)
Q Consensus 209 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~~ 285 (543)
...++.++..+..+|..+. ++++.|++++|.++.+ +..+..+++|++|++++|.+..+....+. ..|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777777777776543 5777888888777754 45677777788887777777765543322 23555555555
Q ss_pred CCCCCChh-hcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeee
Q 009119 286 SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (543)
Q Consensus 286 ~i~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (543)
.++.++.. +..+++|++|++++|.+..++.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------------------------------- 164 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPS------------------------------------------------- 164 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECT-------------------------------------------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCH-------------------------------------------------
Confidence 55554332 4445555555555554433221
Q ss_pred CCCCCCCCChhhhccCCccEEEcCCC-cCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCccc
Q 009119 365 EGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442 (543)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~ 442 (543)
..+..+++|++|++++| .+..++. .+..+++|+.|++++|++++++. +..+++|+.|++++|.++++
T Consensus 165 ---------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 165 ---------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp ---------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEE
T ss_pred ---------hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcCccc
Confidence 12334567777777764 3444543 46667777777777777776643 56677777777777777776
Q ss_pred CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
....|..+++|++|++++|.+....+..|..+++|++|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 666677777777777777777766666677777777777777777766543 455677777777777655
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1e-25 Score=211.38 Aligned_cols=244 Identities=22% Similarity=0.199 Sum_probs=176.0
Q ss_pred CCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccc--cchhhh--------cceecEEEccCCCCCC-CChhh--
Q 009119 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE--YCVEAC--------QLRLSVLDLSNNSLSG-LPPEI-- 294 (543)
Q Consensus 228 ~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~--~~~~~~--------~~~L~~L~l~~~~i~~-~~~~l-- 294 (543)
..++|+.+++++|.+ .+|..+... ++.|++++|.+.. ++.... ...|++|++++|.+++ +|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 445666667777766 666544433 6677777776643 222221 2336666666665553 44433
Q ss_pred cCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCCh
Q 009119 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374 (543)
Q Consensus 295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 374 (543)
..+++|++|++++|.+ +.++.
T Consensus 118 ~~l~~L~~L~Ls~N~l-----------------------------------------------------------~~~~~ 138 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSW-----------------------------------------------------------ATRDA 138 (312)
T ss_dssp CCSCCCSEEEEESCBC-----------------------------------------------------------SSSSS
T ss_pred hcCCCccEEEccCCCC-----------------------------------------------------------cchhH
Confidence 4555555555555544 44444
Q ss_pred hhhcc-----CCccEEEcCCCcCccCC-hhhccCCCCceeecccCcCCCCC--HHH--hhCCCCCCEEEcCCCCCccc--
Q 009119 375 EIWEA-----GEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWP--DAI--LTSLSSLSCLKLDNNPLRQV-- 442 (543)
Q Consensus 375 ~~~~~-----~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~i~~~~--~~~--l~~~~~L~~L~L~~n~l~~~-- 442 (543)
.+..+ ++|++|++++|.++.++ ..+..+++|++|++++|++.+.. ... +..+++|++|++++|+++++
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 44444 78999999999988866 67888999999999999876431 122 37889999999999998843
Q ss_pred -CCCccCCCCCccEEEccCCcCCCCCC-CCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCC
Q 009119 443 -PSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNL 520 (543)
Q Consensus 443 -~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~ 520 (543)
....+..+++|++|++++|.+....+ ..+..+++|++|++++|.++.+|..+. ++|++|++++|+++.+|. +..+
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l 295 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDEL 295 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTS
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhC
Confidence 33335678899999999999887653 456778999999999999999888776 899999999999999977 8999
Q ss_pred CCCCeEeCCCCcCCcC
Q 009119 521 TSLTELDLSDNNISAL 536 (543)
Q Consensus 521 ~~L~~L~l~~~~~~~~ 536 (543)
++|+.|++++|+++..
T Consensus 296 ~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEEEEECTTCTTTCC
T ss_pred CCCCEEeccCCCCCCC
Confidence 9999999999999864
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=204.60 Aligned_cols=254 Identities=18% Similarity=0.186 Sum_probs=205.0
Q ss_pred CccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 46 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
+++..+++.+.+.+.+ ..+..+++|++|++++|.+..++ .+|..+++|++|++++|.+...+. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 4667777777777554 56778889999999999999775 589999999999999999986654 88999999999999
Q ss_pred CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc-hh
Q 009119 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ET 202 (543)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 202 (543)
|.++.++. .++|++|++++|.+..++. ..+++|+.|++++|.+..+....+..+++|++|++++|.+..++ ..
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CccccccC----CCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 99987763 3899999999999987743 34788999999999999888777888999999999999997754 33
Q ss_pred c-cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhc-ceecEE
Q 009119 203 I-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVL 280 (543)
Q Consensus 203 l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L 280 (543)
+ ..+++|+.|++++|.+..++.. ..+++|++|++++|.++.++..+..+++|++|++++|.++.++..... ..|+.+
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence 4 4688999999999998877543 348899999999999998888888889999999999988876654332 247777
Q ss_pred EccCCCCC--CCChhhcCCCCCceeecCC
Q 009119 281 DLSNNSLS--GLPPEIGKMTTLRKLLLTG 307 (543)
Q Consensus 281 ~l~~~~i~--~~~~~l~~~~~L~~L~l~~ 307 (543)
++++|.+. .++..+..+++|+.+++.+
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECCC
Confidence 77777776 2556666677777666653
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=4.2e-23 Score=190.38 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=165.8
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccch-hhhc
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~ 89 (543)
..++|.+.+++++|..+. +++++|++++|.+..++. .|.++++|++|++++|.+..++. +|..
T Consensus 10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 368999999999998773 469999999999998864 89999999999999999997765 7899
Q ss_pred cCCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCcc--CCcccccCCCccEE
Q 009119 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (543)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~L 165 (543)
+++|++|++++|.+..++ ..+..+++|++|++++|.+..++. .+.++++|++|++++|.+.. +|..+..+++|+.|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 999999999999998664 578899999999999999997764 68889999999999999886 67888899999999
Q ss_pred EecCCcccccchhhhccccccc----EEECCCCcCCcCchhccCCCcccEEEccCCccccCCCC-CcCCCCCcEEEcCCC
Q 009119 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN 240 (543)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~ 240 (543)
++++|.+..+....+..+..++ ++++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.+++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9999988887766666666655 56666666655544443344555555555555544432 233444444444444
Q ss_pred CC
Q 009119 241 AL 242 (543)
Q Consensus 241 ~l 242 (543)
++
T Consensus 235 ~~ 236 (276)
T 2z62_A 235 PW 236 (276)
T ss_dssp CB
T ss_pred cc
Confidence 33
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.2e-23 Score=209.23 Aligned_cols=234 Identities=25% Similarity=0.253 Sum_probs=147.3
Q ss_pred CCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecC
Q 009119 228 GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306 (543)
Q Consensus 228 ~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~ 306 (543)
.+++|+.|++++|.+..++ ..+..+++|++|++++|.++.... +..+++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------l~~l~~L~~L~Ls 88 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----------------------LESLSTLRTLDLN 88 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----------------------CTTCTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----------------------cccCCCCCEEEec
Confidence 4457888888888887654 567778888888888877764433 3344445555555
Q ss_pred CCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEE
Q 009119 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (543)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 386 (543)
+|.+..++. .++++.+++++|.+..++.. .+++|+.|+
T Consensus 89 ~N~l~~l~~----------------------------------------~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~ 126 (487)
T 3oja_A 89 NNYVQELLV----------------------------------------GPSIETLHAANNNISRVSCS--RGQGKKNIY 126 (487)
T ss_dssp SSEEEEEEE----------------------------------------CTTCCEEECCSSCCCCEEEC--CCSSCEEEE
T ss_pred CCcCCCCCC----------------------------------------CCCcCEEECcCCcCCCCCcc--ccCCCCEEE
Confidence 544432210 02233333333333332221 235677777
Q ss_pred cCCCcCccC-ChhhccCCCCceeecccCcCCCCCHHHhh-CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCC
Q 009119 387 LSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (543)
Q Consensus 387 l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 464 (543)
+++|.++.+ |..+..+++|+.|++++|.+++..+..+. .+++|++|+|++|.+++++. +..+++|++|++++|.++
T Consensus 127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCC
Confidence 777777764 44566777777777777777765555554 57777777777777776643 334677777777777776
Q ss_pred CCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc--cccccccCCCCCCeEeCC
Q 009119 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLS 529 (543)
Q Consensus 465 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~--~l~~~l~~~~~L~~L~l~ 529 (543)
...+. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+.++++
T Consensus 205 ~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 205 FMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 64333 66677777777777777777766666777777777777766 445666666666666664
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.5e-23 Score=204.39 Aligned_cols=229 Identities=21% Similarity=0.258 Sum_probs=179.5
Q ss_pred ccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcC
Q 009119 21 LRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVS 99 (543)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 99 (543)
...+|..+...... +++|++|++++|.+..++ ..|..+++|++|++++|.+...++ +..+++|++|+++
T Consensus 19 ~~~l~~~l~~l~~~---------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 88 (487)
T 3oja_A 19 DSSLKQALASLRQS---------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (487)
T ss_dssp TTTHHHHHHTTSTT---------GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECC
T ss_pred hhhhHHHHHHhccc---------CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEec
Confidence 33556666544222 568999999999888774 688899999999999998886554 8888899999999
Q ss_pred CCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccC-CcccccCCCccEEEecCCcccccchh
Q 009119 100 FNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNN 178 (543)
Q Consensus 100 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~i~~~~~~ 178 (543)
+|.+..++. .++|++|++++|.+..++.. .+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+...
T Consensus 89 ~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 988876653 38889999999888876543 457888999998888865 45677888888899888888876555
Q ss_pred hhc-ccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCE
Q 009119 179 LIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257 (543)
Q Consensus 179 ~~~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~ 257 (543)
.+. .+++|++|++++|.+..++. ...+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..+..+++|+.
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred HHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence 554 67888888888888877754 3357888888888888888877788888888888888888888887888888888
Q ss_pred EeCCCCccc
Q 009119 258 LDLHSNQLK 266 (543)
Q Consensus 258 L~l~~n~l~ 266 (543)
|++++|.+.
T Consensus 242 L~l~~N~l~ 250 (487)
T 3oja_A 242 FDLRGNGFH 250 (487)
T ss_dssp EECTTCCBC
T ss_pred EEcCCCCCc
Confidence 888888776
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=7.2e-22 Score=181.17 Aligned_cols=133 Identities=29% Similarity=0.436 Sum_probs=67.8
Q ss_pred cCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119 379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (543)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 457 (543)
+++|++|++++|.++.++. .+..+++|++|++++|.++.+.+..|..+++|++|++++|.+.+++...|..+++|++|+
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 3455555555555555432 234455555555555555555544455555555555555555555444455555555555
Q ss_pred ccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
+++|.+....+..|..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 555555544444445555555555555555544432 334455555555555443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.5e-22 Score=185.59 Aligned_cols=201 Identities=24% Similarity=0.254 Sum_probs=132.7
Q ss_pred cCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHH
Q 009119 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (543)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (543)
..++++++++++++.++.++... ...++.|++++|.++.+ +..+..+++|++|++++|.+..++..
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------------ 73 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------------
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------------
Confidence 34445555555555555444332 13355555555555553 34577788888888888877544311
Q ss_pred HhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCcee
Q 009119 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408 (543)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 408 (543)
..+++|++|++++|.++.+|..+..+++|+.|
T Consensus 74 ------------------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 74 ------------------------------------------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp ------------------------------------------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred ------------------------------------------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 12456777777777777776666677777777
Q ss_pred ecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 409 ~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
++++|+++.+.+..|.++++|++|++++|+++.++...|..+++|+.|++++|.+.......|..+++|++|++++|+++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 77777777776666677777777777777777776666677777777777777777666666667777777777777777
Q ss_pred cCchhhhccCCCcEEeCCCCccc
Q 009119 489 EAPTDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 489 ~l~~~~~~~~~L~~L~l~~~~l~ 511 (543)
.+|..+..+++|+.|++++|.+.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCeEEeCCCCcc
Confidence 77777777777777777777654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.4e-22 Score=183.99 Aligned_cols=196 Identities=26% Similarity=0.344 Sum_probs=106.0
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAI 87 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~ 87 (543)
+.+++++|++++++++|..++ +++++|++++|.+..++ ..|..+++|++|++++|.+..++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred CCccEEECCCCCCCcCCCCCC---------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 345566666666666665542 24566666666665542 4556666666666666665555432
Q ss_pred hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccCCcccccCCCccEEE
Q 009119 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~ 166 (543)
..+++|++|++++|.+..+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---------------- 137 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK---------------- 137 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC----------------
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC----------------
Confidence 4555556666655555555555555555555555555555444 33445555555555555554
Q ss_pred ecCCcccccchhhhcccccccEEECCCCcCCcCchh-ccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC
Q 009119 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (543)
Q Consensus 167 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 243 (543)
.+....+..+++|+.|++++|.+..++.. +..+++|+.|++++|.+..+|..+...+.|+.+++.+|++.
T Consensus 138 -------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 138 -------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred -------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 44444444444555555555555444432 34455555555555555555555555555666666655544
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.1e-22 Score=185.63 Aligned_cols=156 Identities=25% Similarity=0.309 Sum_probs=84.1
Q ss_pred cCCccEEEcCCCcCccCC-hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccC-CCccCCCCCccEE
Q 009119 379 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQIL 456 (543)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L 456 (543)
+++|++|++++|.++.++ ..+..+++|++|++++|.++.+....+.++++|++|++++|.+.++. ...+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 445555555555555433 33455555555555555555544444555555555555555555432 3345555555555
Q ss_pred EccCCcCCCCCCCCCCCCCcCc----eeecCCCccccCchhhhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCC
Q 009119 457 DLSYNIASLPENPPFSSLPHLQ----ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDN 531 (543)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~----~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~ 531 (543)
++++|.+.......+..+++|+ +|++++|.++.++.......+|+.|++++|+++.+|. .+..+++|+.|++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 5555555544434444444444 5566666666555444444566666666666665542 3455666666666666
Q ss_pred cCC
Q 009119 532 NIS 534 (543)
Q Consensus 532 ~~~ 534 (543)
++.
T Consensus 235 ~~~ 237 (276)
T 2z62_A 235 PWD 237 (276)
T ss_dssp CBC
T ss_pred ccc
Confidence 655
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2e-21 Score=178.23 Aligned_cols=181 Identities=31% Similarity=0.505 Sum_probs=147.8
Q ss_pred cccccceeeeCCCCCCCCCh-hhhccCCccEEEcCCCcCccCChh-hccCCCCceeecccCcCCCCCHHHhhCCCCCCEE
Q 009119 355 LSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432 (543)
Q Consensus 355 ~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L 432 (543)
.+..+++++++++.+..++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.++.+....+.++++|++|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 34578888888888887765 566788888888888888887654 5778888888888888888887778888888888
Q ss_pred EcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 433 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
++++|.++.++...|..+++|++|++++|.+.......|..+++|++|++++|.++.++.. +..+++|++|++++|+++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 8888888888877788888888888888888877776788888888888888888877654 667888888888888888
Q ss_pred cccc-cccCCCCCCeEeCCCCcCCc
Q 009119 512 SIPE-GFKNLTSLTELDLSDNNISA 535 (543)
Q Consensus 512 ~l~~-~l~~~~~L~~L~l~~~~~~~ 535 (543)
.+|. .+..+++|+.|++++|++..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCHHHhccccCCCEEEecCCCeeC
Confidence 8754 47788888888888888763
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=8.8e-22 Score=183.91 Aligned_cols=193 Identities=20% Similarity=0.321 Sum_probs=107.7
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 445666666666666554 45566666666666666665544 556666666666666655543 455556666666666
Q ss_pred CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (543)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (543)
|.++.++. +..+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~------------------------l~~~~~-l 169 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ------------------------VSDLTP-L 169 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC------------------------CCCCGG-G
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc------------------------CCCChh-h
Confidence 65555542 4555555555555555554432 4444455555554444 444433 4
Q ss_pred cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccccc
Q 009119 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (543)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~ 268 (543)
..+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.++..
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence 445555555555555554433 4455566666666666655542 55666666666666666543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.7e-21 Score=180.64 Aligned_cols=198 Identities=25% Similarity=0.331 Sum_probs=174.3
Q ss_pred HHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch
Q 009119 6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85 (543)
Q Consensus 6 ~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~ 85 (543)
...+.+++|++++++++++| .+ .. +++|++|++++|.+..++. +..+++|++|++++|.+..++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~-~~------------l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GV-QY------------LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TG-GG------------CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred HHcCCcCEEEeeCCCccCch-hh-hc------------cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 45688999999999999987 33 22 7889999999999999877 999999999999999999875
Q ss_pred hhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEE
Q 009119 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165 (543)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L 165 (543)
.+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|+.|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence 68999999999999999998865 8899999999999999998865 8899999999999999998866 8899999999
Q ss_pred EecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCC
Q 009119 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (543)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 225 (543)
++++|.+..+.. +..+++|++|++++|.+..++. +..+++|+.|++++|.+...|..
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence 999999987765 7888899999999999887774 77888899999988888766543
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.2e-21 Score=179.84 Aligned_cols=139 Identities=22% Similarity=0.303 Sum_probs=82.6
Q ss_pred hccCCccEEEcCCCcCccCChh-hccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccE
Q 009119 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (543)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 455 (543)
..+++|++|++++|.++.++.. +..+++|++|++++|.++++....+..+++|++|++++|++++++...|..+++|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 3455666666666666665432 455666666666666666666555566666666666666666655555566666666
Q ss_pred EEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc-cccccccCCC
Q 009119 456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLT 521 (543)
Q Consensus 456 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~ 521 (543)
|++++|.+....+..+..+++|++|++++|.+.. .++.|+.++++.|.+. .+|..+..++
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 6666666665555555666666666666665542 2445666666666555 3455444443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.7e-22 Score=177.24 Aligned_cols=195 Identities=18% Similarity=0.244 Sum_probs=108.5
Q ss_pred CccEEEcCccccccchH-HhcCCCCCCEEEcCCCc-Ccccch-hhhccCCCCEEEcCC-CCCCCCC-hhhcccCCccEEe
Q 009119 46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKFD 120 (543)
Q Consensus 46 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~L~ 120 (543)
++++|++++|.++.++. .|+++++|++|++++|. +..++. +|..+++|++|++++ |.++.++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 46666666666666653 56666666666666664 555543 556666666666665 5555443 2455555566666
Q ss_pred cCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC-cccccchhhhccccccc-EEECCCCcCCc
Q 009119 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNG 198 (543)
Q Consensus 121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~-~L~l~~~~~~~ 198 (543)
+++|.++.+|. +..+++|+ .|+.|++++| .+..+....+..+++|+ ++++++|.+..
T Consensus 112 l~~n~l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred CCCCCCccccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 55555555543 44444444 0115555555 45444444455555555 55555555555
Q ss_pred CchhccCCCcccEEEccCCc-cccCC-CCCcCC-CCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119 199 MPETIGSLSRLIRLDLHQNR-ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (543)
Q Consensus 199 ~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 263 (543)
++......++|+.|++++|+ +..++ ..+..+ ++|+.+++++|.++.+|.. .+++|+.|++.++
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 54433333556666666663 55553 334555 6666666666666665553 4566666666654
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7.9e-21 Score=172.20 Aligned_cols=177 Identities=30% Similarity=0.422 Sum_probs=161.8
Q ss_pred ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
..+++++++++++.+|..+. +.++.|++++|.++.++. .+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 56789999999999987764 689999999999998654 688999999999999999999988899999999999999
Q ss_pred CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccccc-
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP- 514 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l~- 514 (543)
|.++.++...|..+++|++|++++|.+....+..|..+++|++|++++|.++.++. .+..+++|++|++++|+++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99999998889999999999999999998887788999999999999999998876 5788999999999999999885
Q ss_pred ccccCCCCCCeEeCCCCcCCcC
Q 009119 515 EGFKNLTSLTELDLSDNNISAL 536 (543)
Q Consensus 515 ~~l~~~~~L~~L~l~~~~~~~~ 536 (543)
..+..+++|+.|++++|++..-
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 4789999999999999999754
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.2e-21 Score=176.45 Aligned_cols=201 Identities=16% Similarity=0.256 Sum_probs=140.8
Q ss_pred cccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCC-CCCCCh-hhcccCCccEEecCC-CCccccccc
Q 009119 57 IEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELPSS 132 (543)
Q Consensus 57 ~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~~~~~~~~ 132 (543)
++.+|. +. +++++|++++|.+..++. +|..+++|++|++++|. ++.++. .+.++++|++|++++ |.++.++.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~- 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP- 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-
Confidence 555655 33 366777777776666654 56666666666666665 555443 455566666666665 55554442
Q ss_pred ccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhccccccc---EEECCCC-cCCcCch-hccCCC
Q 009119 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT---ELIASKN-LLNGMPE-TIGSLS 207 (543)
Q Consensus 133 ~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~l~~~~ 207 (543)
..+..+++|++|++++|.+..++. +..+++|+ +|++++| .+..++. .+..++
T Consensus 99 ---------------------~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 99 ---------------------DALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp ---------------------TSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred ---------------------HHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchh
Confidence 234444455555555554444433 45556666 9999999 8888775 478899
Q ss_pred ccc-EEEccCCccccCCCCCcCCCCCcEEEcCCCC-CCCCC-ccccCC-CCCCEEeCCCCcccccchhhhcceecEEEcc
Q 009119 208 RLI-RLDLHQNRILSIPSSISGCCSLAEFYMGNNA-LSALP-AELGKL-SKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (543)
Q Consensus 208 ~L~-~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~l~-~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 283 (543)
+|+ .|++++|.+..+|......++|++|++++|. ++.++ ..+..+ ++|+.|++++|.++.++.. ....++.|+++
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 999 9999999999888765455899999999995 98775 467888 9999999999999988776 44569999988
Q ss_pred CC
Q 009119 284 NN 285 (543)
Q Consensus 284 ~~ 285 (543)
++
T Consensus 235 ~~ 236 (239)
T 2xwt_C 235 NT 236 (239)
T ss_dssp TC
T ss_pred Cc
Confidence 76
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.4e-20 Score=172.79 Aligned_cols=179 Identities=28% Similarity=0.385 Sum_probs=161.9
Q ss_pred cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
..++.+++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++++....+.++++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 67899999999988775 4778999999999999999876 688999999999999999999988889999999999999
Q ss_pred CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccccc-
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP- 514 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~- 514 (543)
|++++++...|..+++|++|++++|.+....+..+..+++|++|++++|+++.++.. +..+++|+.|++++|.++.++
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 999999888899999999999999999988777789999999999999999987655 578999999999999999885
Q ss_pred ccccCCCCCCeEeCCCCcCCcCC
Q 009119 515 EGFKNLTSLTELDLSDNNISALP 537 (543)
Q Consensus 515 ~~l~~~~~L~~L~l~~~~~~~~~ 537 (543)
..+..+++|+.|++++|++..-.
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCT
T ss_pred HHHhCCcCCCEEEccCCCccccC
Confidence 55899999999999999987433
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=181.10 Aligned_cols=226 Identities=22% Similarity=0.230 Sum_probs=161.2
Q ss_pred CCCCEEeCCCCcccc-----cchhhhcceecEEEccCCCCCC-CChhh--cCCCCCceeecCCCCcCcccccccCCCcHH
Q 009119 253 SKLGTLDLHSNQLKE-----YCVEACQLRLSVLDLSNNSLSG-LPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324 (543)
Q Consensus 253 ~~L~~L~l~~n~l~~-----~~~~~~~~~L~~L~l~~~~i~~-~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 324 (543)
..++.+.+.++.+.. +........|++|++++|.+.+ .|..+ ..+++|++|++++|.+.....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 456667777666542 1122222348888888887776 45555 778888888888887643110
Q ss_pred HHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCC-hhhhccCCccEEEcCCCcCccCC-hhhccC
Q 009119 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELP-PELSSC 402 (543)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~ 402 (543)
.++ ..+..+++|++|++++|.++.++ ..+..+
T Consensus 135 ----------------------------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 135 ----------------------------------------------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp ----------------------------------------------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ----------------------------------------------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 000 12234677888888888887754 467788
Q ss_pred CCCceeecccCcCCCC---C-HHHhhCCCCCCEEEcCCCCCcccCCC---ccCCCCCccEEEccCCcCCCCCCCCCCCC-
Q 009119 403 ASLQTLILSRNKIKDW---P-DAILTSLSSLSCLKLDNNPLRQVPSD---GFKDIPMLQILDLSYNIASLPENPPFSSL- 474 (543)
Q Consensus 403 ~~L~~L~l~~~~i~~~---~-~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~- 474 (543)
++|++|++++|++.+. . ...+..+++|++|++++|+++.++.. .+..+++|++|++++|.+....+..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 8888888888876531 1 12235678888888888888754432 24567888888888888887766555555
Q ss_pred --CcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcC
Q 009119 475 --PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 536 (543)
Q Consensus 475 --~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~ 536 (543)
++|++|++++|+++.+|..+. ++|+.|++++|+++.+|. +..+++|+.|++++|++++-
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCCC
Confidence 799999999999998887764 899999999999998865 78899999999999999753
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.2e-21 Score=189.91 Aligned_cols=84 Identities=21% Similarity=0.246 Sum_probs=46.1
Q ss_pred ccCccEEEcCcccccc-----chHHhcCCCCCCEEEcCCCcCc----ccchh-------hhccCCCCEEEcCCCCCCC--
Q 009119 44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLS----ELPAA-------IGELHMLKSLDVSFNSIMK-- 105 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~----~~~~~-------~~~~~~L~~L~l~~~~~~~-- 105 (543)
+++|++|++++|.+.. ++..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4556666666666552 2233556666666666665433 12222 2455666666666665553
Q ss_pred ---CChhhcccCCccEEecCCCCcc
Q 009119 106 ---IPDEIGSATALVKFDCSSNQLK 127 (543)
Q Consensus 106 ---l~~~~~~~~~L~~L~l~~~~~~ 127 (543)
++..+..+++|++|++++|.+.
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCC
Confidence 3445555666666666666554
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2e-21 Score=188.30 Aligned_cols=240 Identities=20% Similarity=0.248 Sum_probs=162.3
Q ss_pred hHHHHHHhhcCeeecCCCcccccch-hhhhcccccCCCCccccccCccEEEcCccccc----cchH-------HhcCCCC
Q 009119 2 DRILKAARTSGSLNLSNRSLRDVPN-EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----KLKE-------DLRNLPL 69 (543)
Q Consensus 2 ~~~~~~~~~~~~l~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~-------~~~~~~~ 69 (543)
.++++..+++++|+++++.++.... .+...+. .+++|++|++++|.+. .+|. .+..+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---------~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA---------SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTT---------TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHH---------hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 4678888999999999999985433 3333222 3889999999998554 2233 3589999
Q ss_pred CCEEEcCCCcCcc-----cchhhhccCCCCEEEcCCCCCCC-----CChhhccc---------CCccEEecCCCCcc--c
Q 009119 70 LTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSA---------TALVKFDCSSNQLK--E 128 (543)
Q Consensus 70 L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~---------~~L~~L~l~~~~~~--~ 128 (543)
|++|++++|.+.. ++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999999885 67789999999999999999872 23334444 88999999888886 3
Q ss_pred cc---ccccCCCCCCEEEccCCcCcc------CCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcC
Q 009119 129 LP---SSLGRCLNLSDFKASNNCITS------LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (543)
Q Consensus 129 ~~---~~~~~~~~L~~L~l~~~~~~~------i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (543)
++ ..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.++.... ..+
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~-------------------~~l 236 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-------------------SAL 236 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-------------------HHH
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH-------------------HHH
Confidence 33 345566777777777776661 22255666666666666666532110 123
Q ss_pred chhccCCCcccEEEccCCcccc-----CCCCC--cCCCCCcEEEcCCCCCCC-----CCccc-cCCCCCCEEeCCCCccc
Q 009119 200 PETIGSLSRLIRLDLHQNRILS-----IPSSI--SGCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 200 ~~~l~~~~~L~~L~l~~~~~~~-----~~~~~--~~~~~L~~l~l~~~~l~~-----l~~~l-~~~~~L~~L~l~~n~l~ 266 (543)
+..+..+++|+.|++++|.+.. ++..+ ..+++|+.|++++|.++. +|..+ .++++|++|++++|.++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 3344445555555555555542 22333 226667777777776664 56655 55788888888888887
Q ss_pred ccc
Q 009119 267 EYC 269 (543)
Q Consensus 267 ~~~ 269 (543)
...
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 544
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=3.9e-21 Score=184.30 Aligned_cols=244 Identities=20% Similarity=0.220 Sum_probs=167.2
Q ss_pred eeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-----HHhcCCC-CCCEEEcCCCcCccc-ch
Q 009119 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA 85 (543)
Q Consensus 13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-----~~~~~~~-~L~~L~l~~~~l~~~-~~ 85 (543)
.++++++++.....+.... .++|++|++++|.+...+ +.|..++ +|++|++++|.+... +.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 3577888888655555543 455999999999888654 6788888 899999999988854 44
Q ss_pred hhhcc-----CCCCEEEcCCCCCCCCC-hh----hccc-CCccEEecCCCCcccccc-----cccC-CCCCCEEEccCCc
Q 009119 86 AIGEL-----HMLKSLDVSFNSIMKIP-DE----IGSA-TALVKFDCSSNQLKELPS-----SLGR-CLNLSDFKASNNC 148 (543)
Q Consensus 86 ~~~~~-----~~L~~L~l~~~~~~~l~-~~----~~~~-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~ 148 (543)
.+..+ ++|++|++++|.++... .. +..+ ++|++|++++|.++..+. .+.. ..+|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 55554 88999999999887443 32 4444 789999999998885542 2334 3688888888888
Q ss_pred Ccc-----CCcccccCC-CccEEEecCCcccccchhhhc----cc-ccccEEECCCCcCCc-----CchhccC-CCcccE
Q 009119 149 ITS-----LPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR 211 (543)
Q Consensus 149 ~~~-----i~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~ 211 (543)
+.. ++..+...+ +|++|++++|.+.......+. .. ++|++|++++|.+.. ++..+.. .++|+.
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 873 334445555 888888888888766654333 33 578888888888765 4555544 357888
Q ss_pred EEccCCccccCC-----CCCcCCCCCcEEEcCCCCCCCC--------CccccCCCCCCEEeCCCCccccc
Q 009119 212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALSAL--------PAELGKLSKLGTLDLHSNQLKEY 268 (543)
Q Consensus 212 L~l~~~~~~~~~-----~~~~~~~~L~~l~l~~~~l~~l--------~~~l~~~~~L~~L~l~~n~l~~~ 268 (543)
|++++|.+...+ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+...
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 888888776442 2345667777777777763322 23455666777777777776543
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=3.3e-21 Score=184.80 Aligned_cols=131 Identities=24% Similarity=0.263 Sum_probs=62.8
Q ss_pred CccEEEcCCCcCcc-----CChhhccCC-CCceeecccCcCCCCCHHH----hhCC-CCCCEEEcCCCCCcccCCC----
Q 009119 381 EITKLDLSRNSIQE-----LPPELSSCA-SLQTLILSRNKIKDWPDAI----LTSL-SSLSCLKLDNNPLRQVPSD---- 445 (543)
Q Consensus 381 ~L~~L~l~~~~l~~-----l~~~~~~~~-~L~~L~l~~~~i~~~~~~~----l~~~-~~L~~L~L~~n~l~~~~~~---- 445 (543)
+|++|++++|.+++ ++..+...+ +|++|++++|++++..... +..+ ++|++|++++|.+++.+..
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 45555555555442 222333333 5555555555555544322 2233 3555555555555542221
Q ss_pred ccCC-CCCccEEEccCCcCCCCCC----CCCCCCCcCceeecCCCccc--------cCchhhhccCCCcEEeCCCCccc
Q 009119 446 GFKD-IPMLQILDLSYNIASLPEN----PPFSSLPHLQELYLRRMQLR--------EAPTDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 446 ~~~~-~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~l~--------~l~~~~~~~~~L~~L~l~~~~l~ 511 (543)
++.. .++|++|++++|.++.... ..+..+++|++|++++|.+. .++..+..+++|+.|++++|++.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 1222 3455555555555544322 22345555666666666522 22233445566666666666554
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.6e-20 Score=178.63 Aligned_cols=240 Identities=16% Similarity=0.187 Sum_probs=142.6
Q ss_pred ccEEEcCccccccchHHhcCC--CCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCC--CChhhcccCCccEEecC
Q 009119 47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS 122 (543)
Q Consensus 47 L~~L~l~~~~~~~l~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~ 122 (543)
++.++++++.+. +..+..+ ++++.+++++|.+...+..+..+++|++|++++|.+.. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 566666666554 3344444 66666666666666544445556667777776666552 55556666677777776
Q ss_pred CCCcc-cccccccCCCCCCEEEccCC-cCc--cCCcccccCCCccEEEecCC-ccccc-chhhhcccc-cccEEECCCCc
Q 009119 123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKNL 195 (543)
Q Consensus 123 ~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~i~~~~~~~~~L~~L~l~~~-~i~~~-~~~~~~~~~-~L~~L~l~~~~ 195 (543)
+|.+. ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++.. ....+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 66665 34455666667777777666 454 24444566667777777766 66542 123355566 67777777763
Q ss_pred --C--CcCchhccCCCcccEEEccCCc-cc-cCCCCCcCCCCCcEEEcCCCC-CC-CCCccccCCCCCCEEeCCCCcccc
Q 009119 196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLKE 267 (543)
Q Consensus 196 --~--~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~l~l~~~~-l~-~l~~~l~~~~~L~~L~l~~n~l~~ 267 (543)
+ ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++| +..
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 2 3345555566777777777776 33 334456666777777777774 22 11124566777777777777 433
Q ss_pred cchhhhcceecEEEccCCCCCC
Q 009119 268 YCVEACQLRLSVLDLSNNSLSG 289 (543)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~i~~ 289 (543)
.........+..|++++|.+++
T Consensus 286 ~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp TCHHHHHHHSTTSEESCCCSCC
T ss_pred HHHHHHHhhCcceEEecccCcc
Confidence 2222222335666666666666
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=8.2e-20 Score=168.95 Aligned_cols=174 Identities=25% Similarity=0.363 Sum_probs=156.7
Q ss_pred cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
..++.++++++.+..++. +..+++|++|++++|.+++++. +..+++|+.|++++|.++++.. +..+++|++|++++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence 678999999999998864 7789999999999999999886 8999999999999999998654 79999999999999
Q ss_pred CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccccc
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~ 516 (543)
|++.+++ .+..+++|++|++++|.+... ..+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++.
T Consensus 122 n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 122 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp SCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence 9999873 588899999999999999886 568899999999999999998876 8889999999999999999965
Q ss_pred ccCCCCCCeEeCCCCcCCcCCCCc
Q 009119 517 FKNLTSLTELDLSDNNISALPPEL 540 (543)
Q Consensus 517 l~~~~~L~~L~l~~~~~~~~~~~~ 540 (543)
+..+++|+.|++++|++...|...
T Consensus 196 l~~l~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp GTTCTTCSEEEEEEEEEECCCEEC
T ss_pred hccCCCCCEEECcCCcccCCcccc
Confidence 899999999999999988766543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=171.76 Aligned_cols=196 Identities=17% Similarity=0.140 Sum_probs=96.1
Q ss_pred CCCCEEEcCCCcCc-ccchhh--hccCCCCEEEcCCCCCCCC-C----hhhcccCCccEEecCCCCccccc-ccccCCCC
Q 009119 68 PLLTVLNVSHNKLS-ELPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGSATALVKFDCSSNQLKELP-SSLGRCLN 138 (543)
Q Consensus 68 ~~L~~L~l~~~~l~-~~~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 138 (543)
++|++|++++|.+. ..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+..++ ..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 44566666655555 233333 5555566666655555531 1 12234555555555555555433 34555555
Q ss_pred CCEEEccCCcCcc---C--CcccccCCCccEEEecCCcccccchh---hhcccccccEEECCCCcCCcC-chhccCC---
Q 009119 139 LSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLLNGM-PETIGSL--- 206 (543)
Q Consensus 139 L~~L~l~~~~~~~---i--~~~~~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~~~~~-~~~l~~~--- 206 (543)
|++|++++|.+.. + +..+..+++|++|++++|.++.+... .+..+++|++|++++|.+... |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 5555555555431 1 11224455555555555555433221 233445555555555555443 3333333
Q ss_pred CcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc
Q 009119 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (543)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~ 266 (543)
++|+.|++++|.+..+|..+. ++|++|++++|.++.+|. +..+++|+.|++++|.++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 355555555555555544432 455555555555554433 344455555555555443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=5.2e-19 Score=160.17 Aligned_cols=160 Identities=31% Similarity=0.463 Sum_probs=146.7
Q ss_pred CCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc
Q 009119 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (543)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 459 (543)
...++++++++.++.+|..+. ++++.|++++|.++.+....+.++++|++|++++|.+.++....|..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 467899999999999997654 689999999999999998889999999999999999999988889999999999999
Q ss_pred CCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCCcCCcCC
Q 009119 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALP 537 (543)
Q Consensus 460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~ 537 (543)
+|.+....+..|..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++. .+..+++|+.|++++|+++.+|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 9999988888899999999999999999988765 5779999999999999999865 6899999999999999999998
Q ss_pred CCcC
Q 009119 538 PELV 541 (543)
Q Consensus 538 ~~~~ 541 (543)
+..+
T Consensus 172 ~~~~ 175 (251)
T 3m19_A 172 HGAF 175 (251)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 8654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.1e-19 Score=170.07 Aligned_cols=233 Identities=20% Similarity=0.254 Sum_probs=177.1
Q ss_pred CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCc-ccch-hhh
Q 009119 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG 88 (543)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~-~~~~-~~~ 88 (543)
++++|+++++++||..++ +++++|+|++|.++.++. +|+++++|++|+|++|.+. .++. +|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 679999999999998874 469999999999999974 7999999999999999875 4554 788
Q ss_pred ccCCCCE-EEcCCCCCCCC-ChhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccC-CcCccCCc-ccccC-CCc
Q 009119 89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM 162 (543)
Q Consensus 89 ~~~~L~~-L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~i~~-~~~~~-~~L 162 (543)
++++++. +.+.+|++..+ +..+..+++|++|++++|++..++. .+....++..+++.+ +.+..++. .+..+ ..+
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 8888775 55566888876 4568889999999999999987764 345566778888865 45665543 34444 468
Q ss_pred cEEEecCCcccccchhhhcccccccEEECCC-CcCCcCch-hccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCC
Q 009119 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (543)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 240 (543)
+.|++++|.+..+...++.. .+++++++.+ |.++.+|. .+..+++|+.|++++|.++.+|.. .+.+|+.|...++
T Consensus 157 ~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST 233 (350)
T ss_dssp EEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred hhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence 88888888888887775543 5688888864 67777775 467888888888888888888753 2566777766554
Q ss_pred -CCCCCCccccCCCCCCEEeCCCC
Q 009119 241 -ALSALPAELGKLSKLGTLDLHSN 263 (543)
Q Consensus 241 -~l~~l~~~l~~~~~L~~L~l~~n 263 (543)
.++.+|. +..+++|+.+++.++
T Consensus 234 ~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCC-TTTCCSCCEEECSCH
T ss_pred CCcCcCCC-chhCcChhhCcCCCC
Confidence 4556663 677888888887653
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=8.9e-19 Score=155.92 Aligned_cols=153 Identities=33% Similarity=0.444 Sum_probs=124.2
Q ss_pred CccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
..+.++.+++.++.+|..+. ++|+.|++++|.++.+.+..|.++++|++|+|++|++..++...|..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 35667777777777775443 7788888888888888777778888888888888888888777788888888888888
Q ss_pred CcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeCCCCcCCc
Q 009119 461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA 535 (543)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~~ 535 (543)
|.+.......|..+++|++|++++|+++.+|..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888877777778888888888888888888888888888888888888888875 457888888888888888763
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=8.3e-19 Score=175.48 Aligned_cols=185 Identities=31% Similarity=0.438 Sum_probs=122.9
Q ss_pred CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCC
Q 009119 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (543)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 125 (543)
+++.|++++|.+..+|..+ .++|+.|++++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 5677777777666665544 256777777777666666 345667777777776666665 433 67777777777
Q ss_pred cccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccC
Q 009119 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (543)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (543)
++.+|. .+++|++|++++|.++.+|. .+++|+.|++++|.+..++. +. ++|++|++++|.++.+|. +..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence 666665 45677777777777766654 45667777777777666555 33 667777777777776666 433
Q ss_pred CCcc-------cEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC-CCCccccC
Q 009119 206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGK 251 (543)
Q Consensus 206 ~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~ 251 (543)
+| +.|++++|.+..+|..+..+++|+.|++++|.+. ..|..+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55 8888888888888777777888888888888877 44444433
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=7.9e-19 Score=162.34 Aligned_cols=169 Identities=22% Similarity=0.346 Sum_probs=90.6
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 445666666666655553 25556666666666666555544 5556666666666665555432 55555666666665
Q ss_pred CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (543)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (543)
|.+..+ ..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+..+.. +..+++|++|++++|.+..++. +
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l 196 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L 196 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence 555554 2444555555555555555554 345555555555555555554433 4444555555555555544432 4
Q ss_pred cCCCcccEEEccCCccc
Q 009119 204 GSLSRLIRLDLHQNRIL 220 (543)
Q Consensus 204 ~~~~~L~~L~l~~~~~~ 220 (543)
..+++|+.|++++|.+.
T Consensus 197 ~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCSEEEEEEEEEE
T ss_pred ccCCCCCEEECcCCccc
Confidence 44455555555554444
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.3e-19 Score=163.15 Aligned_cols=172 Identities=22% Similarity=0.286 Sum_probs=149.0
Q ss_pred ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (543)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n 437 (543)
.+..++++++.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++++.+ +.++++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 4566777888888776 5777899999999999999988 68899999999999999999877 889999999999999
Q ss_pred CCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccc
Q 009119 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 517 (543)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l 517 (543)
++++++.. .. ++|++|++++|.++.. ..+..+++|++|++++|+++.++ .+..+++|+.|++++|.++.+ ..+
T Consensus 96 ~l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 96 RLKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CCSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred ccCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 99987653 33 8999999999998875 35889999999999999999886 688899999999999999988 678
Q ss_pred cCCCCCCeEeCCCCcCCcCCCCc
Q 009119 518 KNLTSLTELDLSDNNISALPPEL 540 (543)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~~~ 540 (543)
..+++|+.|++++|++...|...
T Consensus 169 ~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp TTCCCCCEEEEEEEEEECCCEEC
T ss_pred ccCCCCCEEeCCCCcccCCcccc
Confidence 89999999999999988776543
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1.6e-19 Score=171.69 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=186.5
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcc--cchh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA 86 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~ 86 (543)
+..+.+|++++.+. |..+ ..+. .+.++.|+++++.+...+..+..+++|++|++++|.+.. ++..
T Consensus 47 ~~~~~l~l~~~~~~--~~~~-~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVT-GRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp TTSSEEECTTCBCC--HHHH-HHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred hhheeeccccccCC--HHHH-Hhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 34788999998876 3222 2210 167999999999988776667789999999999998773 6778
Q ss_pred hhccCCCCEEEcCCCCCC-CCChhhcccCCccEEecCCC-Ccc--cccccccCCCCCCEEEccCC-cCcc--CCcccccC
Q 009119 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC 159 (543)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~--i~~~~~~~ 159 (543)
+..+++|++|++++|.+. ..+..+..+++|++|++++| .++ .++..+.++++|++|++++| .++. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 889999999999999877 55677888999999999999 677 36667888999999999999 8874 56678888
Q ss_pred C-CccEEEecCCc--cc-ccchhhhcccccccEEECCCCc-CC-cCchhccCCCcccEEEccCCc-cc-cCCCCCcCCCC
Q 009119 160 S-KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCS 231 (543)
Q Consensus 160 ~-~L~~L~l~~~~--i~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~ 231 (543)
+ +|++|++++|. ++ ......+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9 99999999984 43 2222346778999999999998 43 456678888999999999985 22 11124678999
Q ss_pred CcEEEcCCCCCCCCCccccCC-CCCCEEeCCCCcccccchh
Q 009119 232 LAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKEYCVE 271 (543)
Q Consensus 232 L~~l~l~~~~l~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~ 271 (543)
|+.|++++| +..- .+..+ .+++.|+++.|.++.....
T Consensus 274 L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 274 LKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCC
Confidence 999999998 3321 22222 3366667888888865444
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.1e-18 Score=174.70 Aligned_cols=180 Identities=26% Similarity=0.377 Sum_probs=158.6
Q ss_pred CCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCC
Q 009119 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN 147 (543)
Q Consensus 68 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 147 (543)
.+++.|++++|.+..+|..+. ++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 389999999999999887553 78999999999999988 568999999999999999987 554 9999999999
Q ss_pred cCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCc
Q 009119 148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227 (543)
Q Consensus 148 ~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 227 (543)
.++.+|. .+++|+.|++++|.+..++. .+++|++|++++|.+..+|. +. ++|+.|++++|.++.+|. +.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~ 199 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP 199 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence 9999887 68999999999999988765 56899999999999998888 55 899999999999998888 54
Q ss_pred CCCCC-------cEEEcCCCCCCCCCccccCCCCCCEEeCCCCccccc
Q 009119 228 GCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (543)
Q Consensus 228 ~~~~L-------~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~ 268 (543)
. +| +.|++++|.++.+|..+..+++|+.|++++|.+...
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 4 77 999999999999999888899999999999998753
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=6.1e-19 Score=154.88 Aligned_cols=175 Identities=26% Similarity=0.377 Sum_probs=137.5
Q ss_pred cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (543)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n 437 (543)
-+.+++++++++.+|..+ .+++++|++++|.++.++. .+..+++|++|++++|+++++....|.++++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356777777777777654 4578888888888888665 3678888888888888888888777788888888888888
Q ss_pred CCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccccccc
Q 009119 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG 516 (543)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~ 516 (543)
.++.++...|..+++|++|++++|.+....+..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 88888777788888888888888888877777778888888888888888877655 5678888888888886552
Q ss_pred ccCCCCCCeEeCCCCcCC-cCCCCcC
Q 009119 517 FKNLTSLTELDLSDNNIS-ALPPELV 541 (543)
Q Consensus 517 l~~~~~L~~L~l~~~~~~-~~~~~~~ 541 (543)
.+++|+.|++++|+++ .+|+.+.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred --CCCCHHHHHHHHHhCCceeeccCc
Confidence 3567777777777766 5665543
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.6e-19 Score=155.62 Aligned_cols=154 Identities=14% Similarity=0.267 Sum_probs=134.9
Q ss_pred hccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEE
Q 009119 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (543)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 456 (543)
..+++|++|++++|.++++| .+..+++|++|++++|.++... .+..+++|++|++++|.+++.....+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 55788999999999999988 6889999999999999887764 47889999999999999998666679999999999
Q ss_pred EccCCcCCCCCCCCCCCCCcCceeecCCCc-cccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCc
Q 009119 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535 (543)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~ 535 (543)
++++|.+....+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+|..
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 999999987666778899999999999997 88886 6888999999999999999987 78899999999999999864
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.1e-18 Score=174.61 Aligned_cols=174 Identities=26% Similarity=0.359 Sum_probs=156.6
Q ss_pred cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
..++.|+++++.+..++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.++++. .+..+++|+.|+|++
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence 57899999999999886 57889999999999999999876 889999999999999999876 478999999999999
Q ss_pred CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccccc
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~ 516 (543)
|.+.+++ .+..+++|+.|++++|.+... ..+..+++|++|+|++|.++.++. +..+++|+.|+|++|.++.++ .
T Consensus 119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 9999864 488999999999999999886 568899999999999999998766 888999999999999999985 5
Q ss_pred ccCCCCCCeEeCCCCcCCcCCCCc
Q 009119 517 FKNLTSLTELDLSDNNISALPPEL 540 (543)
Q Consensus 517 l~~~~~L~~L~l~~~~~~~~~~~~ 540 (543)
+..+++|+.|+|++|++...|...
T Consensus 193 l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp GTTCTTCSEEECCSEEEECCCCCC
T ss_pred HccCCCCCEEEccCCcCcCCcccc
Confidence 899999999999999988766543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.1e-18 Score=152.34 Aligned_cols=151 Identities=26% Similarity=0.395 Sum_probs=120.1
Q ss_pred cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (543)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n 437 (543)
-+.+++++++++.+|..+. ++++.|++++|.++.++. .+..+++|+.|++++|.++.+.+..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3677888888888776553 678888888888887654 5777888888888888888877777888888888888888
Q ss_pred CCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
+++.++...|..+++|++|++++|.+....+..|..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888777778888888888888888887777788888888888888888877654 666788888888888765
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=9.3e-19 Score=167.46 Aligned_cols=175 Identities=28% Similarity=0.440 Sum_probs=155.2
Q ss_pred ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChh-hc-cCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcC
Q 009119 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (543)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~ 435 (543)
.-+.+++++++++.+|..+ .+.++.|++++|.++.++.. +. .+++|+.|++++|+++.+....|.++++|++|+|+
T Consensus 19 ~~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp ETTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3468999999999998765 35689999999999997654 55 89999999999999999998889999999999999
Q ss_pred CCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhh----hccCCCcEEeCCCCccc
Q 009119 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 436 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~----~~~~~L~~L~l~~~~l~ 511 (543)
+|+++.++...|..+++|++|++++|.+....+..|..+++|++|++++|.++.+|... ..+++|+.|+|++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99999998888999999999999999999888888999999999999999999988765 46899999999999999
Q ss_pred ccc-ccccCCCC--CCeEeCCCCcCC
Q 009119 512 SIP-EGFKNLTS--LTELDLSDNNIS 534 (543)
Q Consensus 512 ~l~-~~l~~~~~--L~~L~l~~~~~~ 534 (543)
.+| ..+..++. |+.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 986 56777877 489999999875
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=152.01 Aligned_cols=151 Identities=25% Similarity=0.310 Sum_probs=117.5
Q ss_pred cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
-+.++++++.++.+|..+ .+.+++|++++|.++.++ ..+..+++|+.|++++|.++++....|.++++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 457888888888777655 345678888888887763 2367788888888888888887777778888888888888
Q ss_pred CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccc
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~ 511 (543)
|.++.++...|..+++|++|++++|.+....+..|..+++|++|++++|+++.+ |..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888877777788888888888888888877777778888888888888888866 566777888888888888766
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=6.8e-18 Score=160.81 Aligned_cols=211 Identities=18% Similarity=0.233 Sum_probs=156.7
Q ss_pred cEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCC-CCC-hhhcccCCccE-EecCC
Q 009119 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIP-DEIGSATALVK-FDCSS 123 (543)
Q Consensus 48 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~-~l~-~~~~~~~~L~~-L~l~~ 123 (543)
+.++.+++.++++|..+. +++++|+|++|.++.+|. +|.++++|++|+|++|.+. .++ .+|.++++++. +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 678999999999997663 689999999999999976 7899999999999999975 454 35788888776 55667
Q ss_pred CCccccc-ccccCCCCCCEEEccCCcCccCCc-ccccCCCccEEEecC-Ccccccchhhhcccc-cccEEECCCCcCCcC
Q 009119 124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM 199 (543)
Q Consensus 124 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~ 199 (543)
|+++.++ ..+..+++|++|++++|.+..++. .+....++..+++.+ +.+..+....|..+. .++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 8888774 668889999999999999887754 355667788888865 567777766666654 477778888877777
Q ss_pred chhccCCCcccEEEccC-CccccCCC-CCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCC
Q 009119 200 PETIGSLSRLIRLDLHQ-NRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 262 (543)
Q Consensus 200 ~~~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~ 262 (543)
+.......+|+.+++.+ +.+..+|. .|..+++|++|++++|.++.+|.. .+.+|+.|.+.+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~ 232 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARS 232 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhcc
Confidence 76665666777777764 56666664 456677777777777777766552 244555555433
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.3e-17 Score=144.82 Aligned_cols=155 Identities=33% Similarity=0.426 Sum_probs=138.6
Q ss_pred ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (543)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 461 (543)
-+.++.+++.++.+|..+ .++|++|++++|.++++....+.++++|++|++++|+++.++...|..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467889999999988654 468999999999999998888899999999999999999998888899999999999999
Q ss_pred cCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCCcCCcCCC
Q 009119 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPP 538 (543)
Q Consensus 462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~ 538 (543)
.+.......+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|+.|++++|++..-.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99988777789999999999999999988765 6789999999999999998864 47899999999999999875433
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=6.9e-18 Score=149.03 Aligned_cols=151 Identities=25% Similarity=0.355 Sum_probs=134.1
Q ss_pred ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (543)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 461 (543)
-+.++++++.++.+|..+. ++++.|++++|.++.+....|..+++|+.|+|++|++..+...+|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3678999999999987554 68999999999999988888899999999999999999988888999999999999999
Q ss_pred cCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeCCCCcCC
Q 009119 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~ 534 (543)
.+..+....|..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99988777789999999999999999977 456788999999999999999885 45888999999999999875
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.1e-17 Score=169.39 Aligned_cols=172 Identities=23% Similarity=0.348 Sum_probs=130.0
Q ss_pred ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
+++|+.|++++|.+..++ .++.+++|+.|+|++|.+..++. +..+++|+.|+|++|.+..++ .+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 566888888888877775 47778888888888888777755 777888888888888777765 577788888888888
Q ss_pred CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (543)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (543)
|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.. +..+++|+.|++++|.+..++ .+
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 8877763 567777888888888877776 567777888888888887776655 677777888888887777764 46
Q ss_pred cCCCcccEEEccCCccccCC
Q 009119 204 GSLSRLIRLDLHQNRILSIP 223 (543)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~ 223 (543)
..+++|+.|++++|.+...|
T Consensus 194 ~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCTTCSEEECCSEEEECCC
T ss_pred ccCCCCCEEEccCCcCcCCc
Confidence 67777888888777776544
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=7.1e-18 Score=153.34 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=88.8
Q ss_pred ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCc
Q 009119 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126 (543)
Q Consensus 47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 126 (543)
++.++++++.+.+++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence 444445555444443 3444555555555555555444 44455555555555555554444 44555555555555555
Q ss_pred ccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCC
Q 009119 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 206 (543)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 206 (543)
+.++.... ++|++|++++|.+..++ .+..+++|+.|++++|.+..+. .+..+++|++|++++|.+..+ ..+..+
T Consensus 98 ~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l 171 (263)
T 1xeu_A 98 KNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRL 171 (263)
T ss_dssp SCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred CCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhccC
Confidence 54432222 55555555555555543 3555555555555555555543 255556666666666666555 445566
Q ss_pred CcccEEEccCCccccCC
Q 009119 207 SRLIRLDLHQNRILSIP 223 (543)
Q Consensus 207 ~~L~~L~l~~~~~~~~~ 223 (543)
++|+.|++++|.+...|
T Consensus 172 ~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCCEEEEEEEEEECCC
T ss_pred CCCCEEeCCCCcccCCc
Confidence 66666666666665443
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=147.47 Aligned_cols=151 Identities=23% Similarity=0.367 Sum_probs=133.9
Q ss_pred ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCC-HHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
-+.++++++.++.+|..+. +.++.|++++|.++.+. ...|.++++|++|++++|.++.+...+|..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4689999999999987553 46789999999999874 35578999999999999999999888899999999999999
Q ss_pred CcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCC
Q 009119 461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 534 (543)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~ 534 (543)
|.+....+..|..+++|++|++++|+++.+ +..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999988888889999999999999999977 56688899999999999999988 788999999999999999876
No 114
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=1.4e-16 Score=154.31 Aligned_cols=200 Identities=11% Similarity=0.161 Sum_probs=103.5
Q ss_pred cccch-HHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccccc-cc
Q 009119 57 IEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SS 132 (543)
Q Consensus 57 ~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~ 132 (543)
++.|. .+|.+|.+|+.+.+..+ +..|.+ +|.+|.+|+.+++..+ +..+ ..+|.++++|+.+.+..+ +..+. ..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 33443 35666666666666532 444433 5666666666666533 3332 234555666665555432 22222 23
Q ss_pred ccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc-hhccCCCcccE
Q 009119 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIR 211 (543)
Q Consensus 133 ~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~ 211 (543)
|..+. +....+.......-..+|..|.+|+.+.+.++ +..+...+|.++.+|+.+.+..+ +..+. .++.++..|+.
T Consensus 136 F~~~~-~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCD-FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTCC-CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred eeccc-ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 33332 22222222111111235666677777777543 45566666777777777776655 33332 34566677777
Q ss_pred EEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (543)
Q Consensus 212 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 263 (543)
+.+..+... +......+..|+.+.+......--...+..+.+++.+.+..+
T Consensus 213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CCCCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT
T ss_pred eecCCCceE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCC
Confidence 766654322 223344566777777754322212235666777777776554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=159.13 Aligned_cols=156 Identities=29% Similarity=0.373 Sum_probs=139.7
Q ss_pred ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhh-CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
-+.++++++.++.+|..+. +.++.|++++|.++++....+. ++++|+.|+|++|++..+...+|..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3689999999999997543 5699999999999998888787 999999999999999999988899999999999999
Q ss_pred CcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccccccccc----cCCCCCCeEeCCCCcCCc
Q 009119 461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF----KNLTSLTELDLSDNNISA 535 (543)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l~~~l----~~~~~L~~L~l~~~~~~~ 535 (543)
|.+.......|..+++|++|++++|.++.+ +..+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999988888899999999999999999976 566888999999999999999997553 679999999999999999
Q ss_pred CCCC
Q 009119 536 LPPE 539 (543)
Q Consensus 536 ~~~~ 539 (543)
+|..
T Consensus 178 l~~~ 181 (361)
T 2xot_A 178 LPLT 181 (361)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 8853
No 116
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=2e-16 Score=153.23 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=37.9
Q ss_pred cccch-hhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccC
Q 009119 81 SELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASN 146 (543)
Q Consensus 81 ~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 146 (543)
++|.. +|.+|.+|+.+.+..+ ++.+ ..+|.+|++|+.+++..+ ++.++ ..|.++.+|+.+.+..
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 34533 7777777777777643 5544 345777777777777543 44443 3455566666655543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6.6e-17 Score=143.80 Aligned_cols=153 Identities=26% Similarity=0.340 Sum_probs=137.9
Q ss_pred cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcC
Q 009119 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (543)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~ 435 (543)
++...+++++++++.+|..+ .++|++|++++|.++.+ |..+..+++|+.|++++|.++.+....|.++++|+.|+|+
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EeCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 56678999999999998766 38999999999999996 6678899999999999999999998889999999999999
Q ss_pred CCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccc
Q 009119 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQS 512 (543)
Q Consensus 436 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~ 512 (543)
+|+++.++...|..+++|++|++++|.+..+ +..+..+++|++|++++|+++.++. .+..+++|+.|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999888899999999999999999854 5667899999999999999998875 47789999999999998873
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=144.65 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=132.3
Q ss_pred cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
+.++.++++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 67899999999999888 6888999999999999887776 688899999999999999986666688999999999999
Q ss_pred CCCcccCCCccCCCCCccEEEccCCc-CCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccc
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS 512 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~ 512 (543)
|.+++.....+..+++|++|++++|. +.... .+..+++|++|++++|.++.++ .+..+++|+.|++++|++..
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99998666678999999999999998 66653 5889999999999999999887 78889999999999998764
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.5e-16 Score=150.23 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCcc-EEEccCCcCCCCCCCCCCCCCcCcee
Q 009119 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQEL 480 (543)
Q Consensus 402 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L 480 (543)
|++|+.+++++|+++.++..+|.+|++|+.+++.+| +..++..+|.+|++|+ .+++.+ .+..+...+|.+|++|+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 555666666655566555555666666666666555 5555555666666665 666655 4555555556666666666
Q ss_pred ecCCCccccCch-hhhccCCCcEEe
Q 009119 481 YLRRMQLREAPT-DILRLQQLRILD 504 (543)
Q Consensus 481 ~l~~~~l~~l~~-~~~~~~~L~~L~ 504 (543)
+++++.++.++. .|.+|++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 666666665543 344556666554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=8.9e-19 Score=176.38 Aligned_cols=200 Identities=19% Similarity=0.181 Sum_probs=103.4
Q ss_pred ccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCc-------------Cc-ccchhhhccCCCCEEE-cCCCCCCCC
Q 009119 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI 106 (543)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-------------l~-~~~~~~~~~~~L~~L~-l~~~~~~~l 106 (543)
+.+++|+.|+|++|.++.+|..++++++|+.|++++|. .. .+|..++.+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 44666666666666666666666666666666665542 11 2233444444555444 333322211
Q ss_pred ChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccc
Q 009119 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186 (543)
Q Consensus 107 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L 186 (543)
+. +.+++|.+..++. ..|++|++++|.++.+|. +..+++|+.|++++|.+..++. .+..+++|
T Consensus 426 ~~----------l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L 488 (567)
T 1dce_A 426 RS----------KFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCL 488 (567)
T ss_dssp HH----------HHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTC
T ss_pred hh----------hhhhcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCC
Confidence 10 0111111111111 135555555555555543 5555555555555555554443 25555555
Q ss_pred cEEECCCCcCCcCchhccCCCcccEEEccCCccccC--CCCCcCCCCCcEEEcCCCCCCCCCcc----ccCCCCCCEEe
Q 009119 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLD 259 (543)
Q Consensus 187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~l~~l~~~----l~~~~~L~~L~ 259 (543)
+.|++++|.++.+| .+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++..|.. +..+++|+.|+
T Consensus 489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 489 EVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55555555555555 555566666666666666655 55556666666666666666544332 23356676665
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=4.8e-17 Score=137.42 Aligned_cols=134 Identities=27% Similarity=0.313 Sum_probs=84.9
Q ss_pred CCCceeecccCcCC--CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCcee
Q 009119 403 ASLQTLILSRNKIK--DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480 (543)
Q Consensus 403 ~~L~~L~l~~~~i~--~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 480 (543)
++|+.|++++|.++ .++ ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34444444444444 222 2234445555555555555544 335556666666666666655444444557777777
Q ss_pred ecCCCccccCc--hhhhccCCCcEEeCCCCccccccc----cccCCCCCCeEeCCCCcCCcCCCC
Q 009119 481 YLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----GFKNLTSLTELDLSDNNISALPPE 539 (543)
Q Consensus 481 ~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~l~~----~l~~~~~L~~L~l~~~~~~~~~~~ 539 (543)
++++|.++.++ ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++.++|+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 77777777665 566777888888888888887765 677888888888888888877765
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.4e-16 Score=150.49 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=103.7
Q ss_pred CCCCceeecccCcCCCCCHHHh-hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCc-e
Q 009119 402 CASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ-E 479 (543)
Q Consensus 402 ~~~L~~L~l~~~~i~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~ 479 (543)
..+++.+.+.++ +.......+ ..+++|+.+++++|+++.++..+|.+|++|+++++.+| +..+...+|..+++|+ +
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 456677777654 222222222 34899999999999999999999999999999999998 8888888999999999 9
Q ss_pred eecCCCccccCc-hhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeC
Q 009119 480 LYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDL 528 (543)
Q Consensus 480 L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l 528 (543)
+.+.+ .++.++ ..|..|++|+.+++++|.++.++ ..|..|++|+.++.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999 888775 56788999999999999999995 57999999999863
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=4.7e-18 Score=171.09 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=121.2
Q ss_pred HhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccc--------------cccchHHhcCCCCCCEE
Q 009119 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTVL 73 (543)
Q Consensus 8 ~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------~~~l~~~~~~~~~L~~L 73 (543)
...++.|+++++.++.+|..+.. +++|+.|+++++. ...+|..++.+++|+.|
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence 45678899999999999988865 6789999987763 22445678888889888
Q ss_pred E-cCCCcCcccch------hhhc--cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEc
Q 009119 74 N-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 144 (543)
Q Consensus 74 ~-l~~~~l~~~~~------~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 144 (543)
+ ++.+.+..++. .+.. ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|++|++
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 8 66655443322 1111 1257777777777777765 77777777777777777777777777777777777
Q ss_pred cCCcCccCCcccccCCCccEEEecCCcccccc-hhhhcccccccEEECCCCcCCcCc
Q 009119 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMP 200 (543)
Q Consensus 145 ~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 200 (543)
++|.++.+| .+..+++|+.|++++|.+..+. ...+..+++|+.|++++|.+...|
T Consensus 494 s~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 494 SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 777777665 6666666666666666666553 334555566666666666555443
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=1.2e-14 Score=139.80 Aligned_cols=127 Identities=11% Similarity=0.183 Sum_probs=74.8
Q ss_pred CccEEEcCCCcCccC-ChhhccCCCCceeecccCcCC-----CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCcc
Q 009119 381 EITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIK-----DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (543)
Q Consensus 381 ~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 454 (543)
+|+.+.+. +.++.+ ..+|..|++|+.+++.++.+. .+...+|.+|++|+.+.+. +.+..++..+|.+|++|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 45555552 234443 234566666666666655443 4555666677777777776 346666666677777777
Q ss_pred EEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhcc-CCCcEEeCCCCccc
Q 009119 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRL-QQLRILDLSQNSLQ 511 (543)
Q Consensus 455 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~-~~L~~L~l~~~~l~ 511 (543)
.+.+..+ +..+...+|..+ +|+++.+.+|.+..++.. +.++ ..++.|.+..+.+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7777543 555555666666 677777777666654433 3344 35666666665443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3e-16 Score=132.51 Aligned_cols=135 Identities=21% Similarity=0.169 Sum_probs=104.6
Q ss_pred CCccEEEcCCCcCc--cCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119 380 GEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (543)
Q Consensus 380 ~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 457 (543)
++|++|++++|.++ .+|..+..+++|+.|++++|.++++ ..+..+++|++|++++|++.+.....+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56788888888877 6777777788888888888887776 4567788888888888888774444456678888888
Q ss_pred ccCCcCCCCCC-CCCCCCCcCceeecCCCccccCch----hhhccCCCcEEeCCCCcccccccc
Q 009119 458 LSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPT----DILRLQQLRILDLSQNSLQSIPEG 516 (543)
Q Consensus 458 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l~~~~l~~l~~~ 516 (543)
+++|.+..... ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88888776532 567788888888888888887775 677788999999999888877653
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=9.1e-15 Score=140.66 Aligned_cols=259 Identities=11% Similarity=0.143 Sum_probs=165.4
Q ss_pred CCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcc-eecEEEccCCCCCCC-ChhhcCCCCCceee
Q 009119 228 GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGL-PPEIGKMTTLRKLL 304 (543)
Q Consensus 228 ~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~ 304 (543)
.+..++.+.+.+. ++.++ .+|.++ +|+.+.+..+ ++.+....|.. .|+.+.+.+ .+..+ ..+|.+|++|+.++
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3577788887653 44443 356664 7999998776 66666655543 488888876 55554 34588888899999
Q ss_pred cCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChh-hhccCCcc
Q 009119 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEIT 383 (543)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~ 383 (543)
+.++.+..++...|.. .+++.+.+.++ +..+... +..|++|+
T Consensus 187 l~~n~l~~I~~~aF~~------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 187 LSKTKITKLPASTFVY------------------------------------AGIEEVLLPVT-LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CTTSCCSEECTTTTTT------------------------------------CCCSEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cCCCcceEechhhEee------------------------------------cccCEEEeCCc-hheehhhHhhCCCCCC
Confidence 8888887776655542 34566666533 4444433 34566777
Q ss_pred EEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCc-----ccCCCccCCCCCccEEE
Q 009119 384 KLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPMLQILD 457 (543)
Q Consensus 384 ~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~ 457 (543)
.+++.++ ++.++. +|.. .+|+.+.+ .+.++.+...+|.+|++|+.+++.++.+. .++..+|.+|++|+.++
T Consensus 230 ~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 230 TIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp CEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred EEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence 7777653 444433 3444 56777777 44566666667777777777777666554 46666777777777777
Q ss_pred ccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccccc-ccccCCC-CCCeEeCCCCcC
Q 009119 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLT-SLTELDLSDNNI 533 (543)
Q Consensus 458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~-~L~~L~l~~~~~ 533 (543)
+.+ .+..+...+|.+|++|+.+.+..+ ++.++. .|..| +|+.+++++|.+..++ ..|..++ .++.|++-.+.+
T Consensus 307 l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 307 IPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred eCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 773 366666667777777777777543 554433 35556 7777777777666553 4455553 566676655543
No 127
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.63 E-value=3.8e-14 Score=137.19 Aligned_cols=131 Identities=14% Similarity=0.248 Sum_probs=90.5
Q ss_pred hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCc
Q 009119 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476 (543)
Q Consensus 397 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 476 (543)
.+|..|..|+.+.+.++ +..+....|.++++|+.+.+. +.++.++..+|.+|.+|+.+++..+ +..+...+|.+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35778888888888643 445666778888888888886 5677788888888888888888754 66666778888888
Q ss_pred CceeecCCCccccCch-hhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcC
Q 009119 477 LQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 533 (543)
Q Consensus 477 L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~ 533 (543)
|+++.+..+ ++.++. +|.+|++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 988888654 666643 46778889999888865321 3567788888888766543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.2e-15 Score=127.99 Aligned_cols=127 Identities=27% Similarity=0.378 Sum_probs=89.1
Q ss_pred ceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCC
Q 009119 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (543)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l 439 (543)
+.+++++++++.+|..+ .+++++|++++|.++.+|..+..+++|+.|++++|.++.+....|.++++|++|+|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56677777777776544 2567777777777777776677777777777777777777666677777777777777777
Q ss_pred cccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119 440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 440 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
+.++..+|..+++|++|++++|.+.......|..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7766666777777777777777776665556666777777777776654
No 129
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.62 E-value=5.1e-14 Score=136.36 Aligned_cols=127 Identities=15% Similarity=0.270 Sum_probs=79.3
Q ss_pred ccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (543)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 457 (543)
.|..|+.+.+.+....--..+|..|+.|+.+.+. +.++.+...+|.+|.+|+.+.+..+ ++.++..+|.+|.+|+.+.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 3555666666543322223356677777777774 4566677777788888888888643 6777777788888888888
Q ss_pred ccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCc
Q 009119 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 509 (543)
Q Consensus 458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 509 (543)
+..+ +..+...+|.+|++|+++++.++.... ..+..+..|+.+.+..+.
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 8643 666666778888888888887764331 345567777777776554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=5.6e-16 Score=127.93 Aligned_cols=126 Identities=23% Similarity=0.290 Sum_probs=80.0
Q ss_pred CCCceeecccCcCC-CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceee
Q 009119 403 ASLQTLILSRNKIK-DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481 (543)
Q Consensus 403 ~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 481 (543)
++++.|++++|.++ +..+..+..+++|+.|++++|.++++ ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 12222345556666666666665555 3456666666666666666654444455577777777
Q ss_pred cCCCccccCc--hhhhccCCCcEEeCCCCccccccc----cccCCCCCCeEeCCC
Q 009119 482 LRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----GFKNLTSLTELDLSD 530 (543)
Q Consensus 482 l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~l~~----~l~~~~~L~~L~l~~ 530 (543)
+++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777654 567777888888888888777654 577788888887753
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=4.7e-16 Score=132.24 Aligned_cols=129 Identities=21% Similarity=0.251 Sum_probs=64.3
Q ss_pred cCCCCceeecccCcCCCCCHHHhhCC-CCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCce
Q 009119 401 SCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479 (543)
Q Consensus 401 ~~~~L~~L~l~~~~i~~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 479 (543)
.+++|+.|++++|.++++.. +..+ ++|++|++++|.++++ ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34444555555554444321 2222 2555555555555444 23455555555555555554433222345555555
Q ss_pred eecCCCccccCch--hhhccCCCcEEeCCCCcccccccc----ccCCCCCCeEeCCCCcC
Q 009119 480 LYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDNNI 533 (543)
Q Consensus 480 L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~l~~~----l~~~~~L~~L~l~~~~~ 533 (543)
|++++|.++.++. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555555555544 445555555555555555555442 55555555555555543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=7.5e-15 Score=126.41 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=115.4
Q ss_pred ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (543)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 461 (543)
-+.++++++.++.+|..+. ++|+.|++++|.++.++ ..|.++++|+.|++++|.++.+....|..+++|++|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3678999999999997543 68999999999999887 67899999999999999999999888999999999999999
Q ss_pred cCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
.+....+.+|..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99998888899999999999999999988775 677999999999999876
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.9e-15 Score=124.75 Aligned_cols=124 Identities=23% Similarity=0.286 Sum_probs=85.8
Q ss_pred ccCccEEEcCccccc--cchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCC-CChhhcccCCccEEe
Q 009119 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFD 120 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~ 120 (543)
.+++++|++++|.+. .+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356777777777776 6666677777777777777777766 566777777777777777775 565666677777777
Q ss_pred cCCCCccccc--ccccCCCCCCEEEccCCcCccCCc----ccccCCCccEEEec
Q 009119 121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVE 168 (543)
Q Consensus 121 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~----~~~~~~~L~~L~l~ 168 (543)
+++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777654 556666677777777766665543 45556666666554
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=5.5e-15 Score=127.38 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=108.7
Q ss_pred cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh--hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (543)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~ 436 (543)
-+.+++++++++.+|..+. .++++|++++|.++.++. .+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4678888888888887654 388999999998888765 378888999999999999888877888899999999999
Q ss_pred CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
|+++.+....|..+++|++|++++|.++...+..+..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9998888877888899999999999888877778888889999999988877
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=5.5e-15 Score=127.36 Aligned_cols=128 Identities=24% Similarity=0.352 Sum_probs=113.1
Q ss_pred ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHH-HhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
.+.++++++.++.+|..+. ++++.|++++|.++.+... .+..+++|++|++++|.++++...+|..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3789999999999987554 3899999999999987764 578999999999999999998888899999999999999
Q ss_pred CcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccc
Q 009119 461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~ 511 (543)
|.+....+..|..+++|++|++++|+++.+ |..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999988888889999999999999999965 667888999999999999876
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.3e-15 Score=129.50 Aligned_cols=135 Identities=22% Similarity=0.212 Sum_probs=103.7
Q ss_pred CccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChh-hcccCCcc
Q 009119 39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALV 117 (543)
Q Consensus 39 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~ 117 (543)
..|.++++|++|++++|.+..++......++|+.|++++|.+..+ ..+..+++|++|++++|.+..++.. +..+++|+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345667888889999888887755444445888888888888877 5778888888888888888877654 47888888
Q ss_pred EEecCCCCcccccc--cccCCCCCCEEEccCCcCccCCcc----cccCCCccEEEecCCcccc
Q 009119 118 KFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTV 174 (543)
Q Consensus 118 ~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i~~~----~~~~~~L~~L~l~~~~i~~ 174 (543)
+|++++|.+..+|. .+..+++|++|++++|.+..++.. +..+++|+.|+++++...+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888888887775 677788888888888888777664 6777777777777766543
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=2.2e-14 Score=122.01 Aligned_cols=127 Identities=28% Similarity=0.411 Sum_probs=65.6
Q ss_pred cEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCc
Q 009119 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (543)
Q Consensus 383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (543)
+.++++++.++.+|..+ .++|+.|++++|+++++....+.++++|++|++++|.++.++...|..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 44455555555544322 2455555555555555554444555555555555555555554445555555555555555
Q ss_pred CCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 463 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5544444445555555555555555554443 234555555555555544
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=1.2e-15 Score=158.63 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=110.4
Q ss_pred hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhh
Q 009119 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (543)
Q Consensus 9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 88 (543)
+.++.+++.++++..+|..+...++- .--.+..++++.+.+...+..|..++.|+.|+|++|.+..+|..+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 34677888888888877666543110 0012233334444444455778889999999999999888888777
Q ss_pred ccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEec
Q 009119 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (543)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~ 168 (543)
.+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 89999999999999888888888999999999999999988888889999999999999998888888899999999999
Q ss_pred CCcccccchhhhccccc-ccEEECCCCcCCcCchhccCCCcccEEEccCC
Q 009119 169 GNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217 (543)
Q Consensus 169 ~~~i~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 217 (543)
+|.+.......+..... ...+++.+|.+.... ...|+.|+++.+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----PHERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcC-----ccccceeEeecc
Confidence 99888655444443321 223556666653211 234556666554
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=6.7e-14 Score=119.04 Aligned_cols=130 Identities=31% Similarity=0.421 Sum_probs=115.4
Q ss_pred CCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecC
Q 009119 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483 (543)
Q Consensus 404 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 483 (543)
..+.++++++.++.++.. ..++|++|++++|++++++...|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 357899999999988743 34799999999999999888888999999999999999998877778999999999999
Q ss_pred CCccccCchh-hhccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCCcC
Q 009119 484 RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 536 (543)
Q Consensus 484 ~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~ 536 (543)
+|.++.++.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|++...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9999988765 57899999999999999998654 68899999999999998753
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=1.4e-14 Score=150.64 Aligned_cols=180 Identities=20% Similarity=0.197 Sum_probs=81.5
Q ss_pred cccceeeeCCCCCCCCChhhhccCCccEE-----EcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCE
Q 009119 357 VTSKELSLEGMNLSAIPSEIWEAGEITKL-----DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431 (543)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L-----~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 431 (543)
+.++.+.+.++.+...+..+.....|..+ ++..+.+...+..+..++.|+.|+|++|.+..+.... ..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCE
Confidence 44566666666655544433222222222 2222233333445666666777777777666555443 36666777
Q ss_pred EEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 432 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~ 511 (543)
|+|++|.++.++ ..|..+++|++|+|++|.++. .+..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|.++
T Consensus 252 L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 777777666554 335666666677776666663 355566666666666666666666666666666666666666666
Q ss_pred cc-cccccCCC-CCCeEeCCCCcCC-cCCCC
Q 009119 512 SI-PEGFKNLT-SLTELDLSDNNIS-ALPPE 539 (543)
Q Consensus 512 ~l-~~~l~~~~-~L~~L~l~~~~~~-~~~~~ 539 (543)
.. |..+..+. .+..+++++|.++ .+|++
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 43 43332221 1123556666555 34443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=2.9e-15 Score=130.07 Aligned_cols=127 Identities=29% Similarity=0.328 Sum_probs=89.6
Q ss_pred CccEEEcCcc--ccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119 46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (543)
Q Consensus 46 ~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (543)
+++...+++. .++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 3455555544 44556667777788888888877777776 77777788888888777777777676677777787777
Q ss_pred CCcccccccccCCCCCCEEEccCCcCccCCc--ccccCCCccEEEecCCcccc
Q 009119 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV 174 (543)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~i~~ 174 (543)
|.++.+| .+..+++|++|++++|.+..++. .+..+++|++|++++|.+..
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 7777765 56667777777777777776543 56677777777777776643
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.47 E-value=7.4e-12 Score=120.63 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=57.2
Q ss_pred ccCCccEEEcCCCcCccCC-hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEE
Q 009119 378 EAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (543)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 456 (543)
.+..|+.+.+..+ ++.+. .++..+.+|+.+.+.. .++.+....|.+|.+|+.+.+.++.++.++..+|.+|.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3455555555543 33332 2355556666666543 3455555556666666666666555666666666666666666
Q ss_pred EccCCcCCCCCCCCCCCCCcCceeecCC
Q 009119 457 DLSYNIASLPENPPFSSLPHLQELYLRR 484 (543)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 484 (543)
.+..+ +..+...+|.+|++|+++.+..
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 66532 4444555566666666665544
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.44 E-value=9.7e-12 Score=119.80 Aligned_cols=313 Identities=12% Similarity=0.142 Sum_probs=165.6
Q ss_pred cccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch-hccCCCcccEEEccCCccccCC-CCCcCCCC
Q 009119 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCS 231 (543)
Q Consensus 154 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 231 (543)
.++....+|+.+.+.. .++.|+..+|.++.+|+++.+..+ ++.+.. ++.++ +|+.+.+..+ +..+. .+|.. .+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 3566678888888865 478888888888888888888654 444443 44454 5666666543 33332 23333 35
Q ss_pred CcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCc
Q 009119 232 LAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310 (543)
Q Consensus 232 L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~ 310 (543)
|+.+.+.++- +.+. ..+.. .+++.+.+..+ ++.+ -...+..+.+++.+.+.....
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~-v~~i---------------------~~~~f~~~~~l~~~~~~~~~~ 170 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKS-VTTI---------------------KDGIGYKAENLEKIEVSSNNK 170 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTT-CCCCEEEECTT-CCEE---------------------CSCTTTTCTTCCEEEECTTCS
T ss_pred cccccCCCcc-cccccccccc-ceeeeeeccce-eecc---------------------ccchhcccccccccccccccc
Confidence 6666665431 1111 11222 23333333221 1111 122355566666665554332
Q ss_pred CcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCC
Q 009119 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN 390 (543)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (543)
........... ..............+..+.+...........+..+..++.+.+...
T Consensus 171 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~ 227 (379)
T 4h09_A 171 NYVAENYVLYN-----------------------KNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG 227 (379)
T ss_dssp SEEEETTEEEE-----------------------TTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT
T ss_pred eeecccceecc-----------------------cccceeccccccccccccccccceeEEeecccccccccceeeeccc
Confidence 11110000000 0000000000011122222222211122233444566777776553
Q ss_pred cCccC-ChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCC
Q 009119 391 SIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (543)
Q Consensus 391 ~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 469 (543)
+..+ ..++..+..|+.+.+..+ ++.+....|.++.+|+.+.+.. .+..++..+|.+|++|+.+.+.++.+..+...
T Consensus 228 -~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 228 -VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR 304 (379)
T ss_dssp -CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred -eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhh
Confidence 3332 334667777777777654 6666666677777777777753 36666767777777777777777666666667
Q ss_pred CCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCccccc-cccccCCCCC
Q 009119 470 PFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI-PEGFKNLTSL 523 (543)
Q Consensus 470 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L 523 (543)
+|..|++|+++.+..+ ++.++. ++.+|++|+.+.+..+ ++.+ ..+|..|..+
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 7777777777777643 555543 4566777777777543 5555 3456665443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=3.2e-15 Score=129.75 Aligned_cols=146 Identities=20% Similarity=0.250 Sum_probs=119.4
Q ss_pred HHHhhcCeeecCCCccc-ccc------hhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCC
Q 009119 6 KAARTSGSLNLSNRSLR-DVP------NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHN 78 (543)
Q Consensus 6 ~~~~~~~~l~l~~~~l~-~~~------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 78 (543)
.....++.++++.+.+. .+| ..+. .+++|++|++++|.+..+| .+..+++|+.|++++|
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-------------~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLS-------------TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-------------HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHh-------------cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC
Confidence 34456666677766665 333 2332 2788999999999999998 8999999999999999
Q ss_pred cCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccc--cccCCCCCCEEEccCCcCccCCc--
Q 009119 79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE-- 154 (543)
Q Consensus 79 ~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i~~-- 154 (543)
.+..+|..+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++. .+..+++|++|++++|.+...+.
T Consensus 81 ~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 81 LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 99999988888999999999999999876 68899999999999999997764 78899999999999998874422
Q ss_pred ---------ccccCCCccEEE
Q 009119 155 ---------DLADCSKMSKLD 166 (543)
Q Consensus 155 ---------~~~~~~~L~~L~ 166 (543)
.+..+++|+.|+
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC
T ss_pred cchHHHHHHHHHhCCCcEEEC
Confidence 256677777765
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.2e-12 Score=109.97 Aligned_cols=106 Identities=26% Similarity=0.362 Sum_probs=84.3
Q ss_pred CccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
..+.++++++.++.+|..+ .++|+.|++++|.++.+.+..|.++++|++|+|++|+++.++...|..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3467778888787777654 36788888888888888777778888888888888888888777778888888888888
Q ss_pred CcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119 461 NIASLPENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
|.+....+..|..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888777667788888888888888776
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.7e-12 Score=109.43 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=86.1
Q ss_pred cEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCc
Q 009119 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (543)
Q Consensus 383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (543)
+.++++++.++.+|..+. ++|+.|++++|.++++.+..|.++++|+.|+|++|+++.++...|..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 677888888887776543 778888888888888877778888888888888888888877777888888888888888
Q ss_pred CCCCCCCCCCCCCcCceeecCCCccccCc
Q 009119 463 ASLPENPPFSSLPHLQELYLRRMQLREAP 491 (543)
Q Consensus 463 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 491 (543)
+..+....|..+++|++|++++|.+...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 88776666888888888888888877444
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2.6e-12 Score=108.31 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred ceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCC
Q 009119 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (543)
Q Consensus 406 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 485 (543)
+.++++++.++.++... .++|++|++++|.+.++....|..+++|++|++++|.+..+....|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777777665432 267777777777777766666777777777777777776665555666777777777777
Q ss_pred ccccCchh-hhccCCCcEEeCCCCccccc
Q 009119 486 QLREAPTD-ILRLQQLRILDLSQNSLQSI 513 (543)
Q Consensus 486 ~l~~l~~~-~~~~~~L~~L~l~~~~l~~l 513 (543)
+++.++.. +..+++|+.|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 77766554 55667777777777766644
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.3e-12 Score=107.35 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=72.9
Q ss_pred CceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCC
Q 009119 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (543)
Q Consensus 405 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 484 (543)
.+.++++++.++.++... .++|++|++++|.++++....|..+++|++|++++|.+..+.+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777777766432 36777777777777777666677777777777777777766666667777777777777
Q ss_pred CccccCchh-hhccCCCcEEeCCCCcccc
Q 009119 485 MQLREAPTD-ILRLQQLRILDLSQNSLQS 512 (543)
Q Consensus 485 ~~l~~l~~~-~~~~~~L~~L~l~~~~l~~ 512 (543)
|+++.++.. +..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 777766553 5567777777777776653
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=5.2e-14 Score=134.05 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=122.0
Q ss_pred hcccccceeeeCCCCCCCC-----Chhhhc-cCCccEEEcCCCcCcc--CChhhccCCCCceeecccCcCCCCCHHHh--
Q 009119 354 RLSVTSKELSLEGMNLSAI-----PSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAIL-- 423 (543)
Q Consensus 354 ~~~~~l~~l~l~~~~~~~~-----~~~~~~-~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~i~~~~~~~l-- 423 (543)
.....++.+++++|.++.. ...+.. +++|++|++++|.+++ +......+++|+.|++++|.+++.....+
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3356789999999988732 222222 2689999999998876 22223446689999999999987655444
Q ss_pred ---hCCCCCCEEEcCCCCCcccCCCc----cCCCCCccEEEccCCcCCCCC----CCCCCCCCcCceeecCCCccc----
Q 009119 424 ---TSLSSLSCLKLDNNPLRQVPSDG----FKDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLR---- 488 (543)
Q Consensus 424 ---~~~~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~---- 488 (543)
...++|++|+|++|.+++.+... +..+++|++|++++|.++... ..++..+++|++|++++|.++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 34688999999999987643332 467889999999999876532 234566788999999999888
Q ss_pred -cCchhhhccCCCcEEeCCCCccccc-cccc---cCCC--CCCeEe--CCCCcCC
Q 009119 489 -EAPTDILRLQQLRILDLSQNSLQSI-PEGF---KNLT--SLTELD--LSDNNIS 534 (543)
Q Consensus 489 -~l~~~~~~~~~L~~L~l~~~~l~~l-~~~l---~~~~--~L~~L~--l~~~~~~ 534 (543)
.++..+..+++|++|+|++|.++.. ...+ .... .|+.+. +.++.++
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445556778999999999988733 1122 2222 166666 5555553
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=8e-14 Score=132.78 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=120.5
Q ss_pred cCCccEEEcCCCcCccC-----Chhhc-cCCCCceeecccCcCCCCCHHHh-hCCCCCCEEEcCCCCCcccCCCcc----
Q 009119 379 AGEITKLDLSRNSIQEL-----PPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGF---- 447 (543)
Q Consensus 379 ~~~L~~L~l~~~~l~~l-----~~~~~-~~~~L~~L~l~~~~i~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~---- 447 (543)
.+.|++|++++|.++.. ...+. .+++|+.|++++|.+++.....+ ..+++|++|+|++|.+++.+...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 47899999999998762 22233 33789999999999886444333 346789999999999986544433
Q ss_pred -CCCCCccEEEccCCcCCCCCC----CCCCCCCcCceeecCCCcccc-----CchhhhccCCCcEEeCCCCcccc-----
Q 009119 448 -KDIPMLQILDLSYNIASLPEN----PPFSSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS----- 512 (543)
Q Consensus 448 -~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~----- 512 (543)
...++|++|++++|.++.... .++..+++|++|++++|.++. ++..+..+++|++|+|++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 357899999999998765322 223678899999999999883 45566778899999999999883
Q ss_pred ccccccCCCCCCeEeCCCCcCCcC
Q 009119 513 IPEGFKNLTSLTELDLSDNNISAL 536 (543)
Q Consensus 513 l~~~l~~~~~L~~L~l~~~~~~~~ 536 (543)
+...+..+++|+.|+|++|+|++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 345567789999999999998753
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.6e-10 Score=108.32 Aligned_cols=101 Identities=27% Similarity=0.336 Sum_probs=51.5
Q ss_pred EcCCC-cCccCChhhccCCCCceeeccc-CcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC
Q 009119 386 DLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (543)
Q Consensus 386 ~l~~~-~l~~l~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 463 (543)
+.+++ .++.+|. +..+++|+.|+|++ |.++.+....|.++++|+.|+|++|+++.+....|..+++|+.|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4555554 45555555555553 555555554455555555555555555555544455555555555555555
Q ss_pred CCCCCCCCCCCCcCceeecCCCccc
Q 009119 464 SLPENPPFSSLPHLQELYLRRMQLR 488 (543)
Q Consensus 464 ~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (543)
..+.+..|..++ |+.|++.+|.+.
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 544433343333 555555555544
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=4.8e-10 Score=106.50 Aligned_cols=105 Identities=20% Similarity=0.224 Sum_probs=93.4
Q ss_pred ceeecccC-cCCCCCHHHhhCCCCCCEEEcCC-CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecC
Q 009119 406 QTLILSRN-KIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483 (543)
Q Consensus 406 ~~L~l~~~-~i~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 483 (543)
..++.+++ .++.++. +..+++|++|+|++ |.+..++...|..+++|+.|+|++|.+..+.+..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 8998877 89999999999996 99999998889999999999999999999888889999999999999
Q ss_pred CCccccCchhhhccCCCcEEeCCCCcccc
Q 009119 484 RMQLREAPTDILRLQQLRILDLSQNSLQS 512 (543)
Q Consensus 484 ~~~l~~l~~~~~~~~~L~~L~l~~~~l~~ 512 (543)
+|+++.+|........|+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccC
Confidence 99999988776655559999999998873
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=3.9e-10 Score=106.30 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=89.1
Q ss_pred hhccCCccEEEcCCCcCc----------cCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCC
Q 009119 376 IWEAGEITKLDLSRNSIQ----------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445 (543)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~----------~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 445 (543)
+..+++|+.|.+.+.... ++...+..+|+|+.|+++++.-..+.. + .+++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHH
Confidence 334567777777543221 233445667778888877662112221 2 267778888777766542222
Q ss_pred cc--CCCCCccEEEccC--CcC-CCCCC----CCC--CCCCcCceeecCCCcccc-Cchhh---hccCCCcEEeCCCCcc
Q 009119 446 GF--KDIPMLQILDLSY--NIA-SLPEN----PPF--SSLPHLQELYLRRMQLRE-APTDI---LRLQQLRILDLSQNSL 510 (543)
Q Consensus 446 ~~--~~~~~L~~L~l~~--n~~-~~~~~----~~~--~~~~~L~~L~l~~~~l~~-l~~~~---~~~~~L~~L~l~~~~l 510 (543)
.+ ..+|+|+.|+|+. +.. ..... ..+ ..+|+|+.|++++|.++. .+..+ ..+++|++|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 22 2567777777752 111 11000 111 346788888887777662 12222 2467788888887777
Q ss_pred cc-----ccccccCCCCCCeEeCCCCcCCc
Q 009119 511 QS-----IPEGFKNLTSLTELDLSDNNISA 535 (543)
Q Consensus 511 ~~-----l~~~l~~~~~L~~L~l~~~~~~~ 535 (543)
+. ++..+..+++|+.|++++|.|++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 63 34444567788888888777653
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=3.2e-09 Score=90.22 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=86.2
Q ss_pred ccCccEEEcCcc-ccc-----cchHHhcCCCCCCEEEcCCCcCcc-----cchhhhccCCCCEEEcCCCCCCC-----CC
Q 009119 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP 107 (543)
Q Consensus 44 ~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~ 107 (543)
++.|++|+|++| .+. .+...+...++|++|+|++|.+.+ +..++...+.|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 788999999998 776 355778888999999999998873 45567778899999999998883 45
Q ss_pred hhhcccCCccEEec--CCCCccc-----ccccccCCCCCCEEEccCCcCc
Q 009119 108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (543)
Q Consensus 108 ~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 150 (543)
.++...++|++|++ ++|.+.. +...+...+.|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66778889999999 8888873 4456677789999999988775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=5.7e-09 Score=88.69 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=95.9
Q ss_pred cchHHhcCCCCCCEEEcCCC-cCc-----ccchhhhccCCCCEEEcCCCCCC-----CCChhhcccCCccEEecCCCCcc
Q 009119 59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (543)
Q Consensus 59 ~l~~~~~~~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~ 127 (543)
.+...+...+.|++|+|++| .+. .+..++..+++|++|+|++|.+. .+...+...++|++|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45567889999999999999 887 34557778899999999999987 24556777899999999999998
Q ss_pred c-----ccccccCCCCCCEEEc--cCCcCcc-----CCcccccCCCccEEEecCCcccc
Q 009119 128 E-----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTV 174 (543)
Q Consensus 128 ~-----~~~~~~~~~~L~~L~l--~~~~~~~-----i~~~~~~~~~L~~L~l~~~~i~~ 174 (543)
. +...+...+.|++|++ ++|.+.. +...+...++|++|++++|.+..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3 5567788889999999 8898873 55667778999999999998764
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1.3e-08 Score=95.94 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=19.6
Q ss_pred CCcccEEEccCCcccc-----CCCCCcCCCCCcEEEcCCCCCC
Q 009119 206 LSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALS 243 (543)
Q Consensus 206 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~ 243 (543)
+++|+.|+++.|.+.. ++..+..+++|+.|++++|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4555555555555442 2223334556666666666554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1.3e-08 Score=83.84 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=20.9
Q ss_pred CCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCC
Q 009119 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (543)
Q Consensus 403 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~ 438 (543)
..|+.||+++|.|++.....+.+|++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 345666666666555555555556666666666653
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=1.6e-07 Score=77.28 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=63.9
Q ss_pred cCCccEEEcCCCcCccC-ChhhccCCCCceeecccC-cCCCCCHHHhhCC----CCCCEEEcCCCC-CcccCCCccCCCC
Q 009119 379 AGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVPSDGFKDIP 451 (543)
Q Consensus 379 ~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~----~~L~~L~L~~n~-l~~~~~~~~~~~~ 451 (543)
...|++||+++|.+++. -..+..|++|+.|++++| .|++.....+..+ ++|++|+|++|. +++.+..++..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 45799999999998772 234678999999999999 4888777767764 579999999985 7765555566677
Q ss_pred CccEEEccCCc
Q 009119 452 MLQILDLSYNI 462 (543)
Q Consensus 452 ~L~~L~l~~n~ 462 (543)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777653
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.15 E-value=1.7e-06 Score=72.63 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=77.3
Q ss_pred ccCccEEEcCcc-ccc-----cchHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCC-----CCC
Q 009119 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (543)
Q Consensus 44 ~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~ 107 (543)
.+.|+.|+|+++ .+. .+.+++...+.|+.|+|++|.+. .+..++...+.|++|+|+.|.+. .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 567888888875 665 45677888888888888888887 44557777888888888888887 344
Q ss_pred hhhcccCCccEEecCCCC---cc-----cccccccCCCCCCEEEccCCcC
Q 009119 108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCI 149 (543)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~---~~-----~~~~~~~~~~~L~~L~l~~~~~ 149 (543)
.++...+.|+.|+++++. +. .+...+..-+.|++|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 556667778888887653 33 2445566677888888876643
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=1.3e-06 Score=77.85 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=39.1
Q ss_pred hccCCCCEEEcCCCCCCCCC---hhhcccCCccEEecCCCCcccccccccCCC--CCCEEEccCCcCcc-CC-------c
Q 009119 88 GELHMLKSLDVSFNSIMKIP---DEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITS-LP-------E 154 (543)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-i~-------~ 154 (543)
.++++|+.|+|++|.+..++ ..+..+++|+.|++++|.+..+. .+..+. +|++|++++|.+.. ++ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555555555555555332 33445555555555555555441 222222 56666666665542 22 1
Q ss_pred ccccCCCccEEE
Q 009119 155 DLADCSKMSKLD 166 (543)
Q Consensus 155 ~~~~~~~L~~L~ 166 (543)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.04 E-value=6.1e-06 Score=69.28 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=84.4
Q ss_pred cchHHhcCCCCCCEEEcCCC-cCc-----ccchhhhccCCCCEEEcCCCCCC-----CCChhhcccCCccEEecCCCCcc
Q 009119 59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (543)
Q Consensus 59 ~l~~~~~~~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~ 127 (543)
.+...+.+.+.|++|+|+++ .+. .+..++.....|+.|+|++|.+. .+..++...+.|++|++++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34456788899999999985 776 35567888899999999999988 34556778889999999999888
Q ss_pred -----cccccccCCCCCCEEEccCCcC---c-----cCCcccccCCCccEEEecCCcc
Q 009119 128 -----ELPSSLGRCLNLSDFKASNNCI---T-----SLPEDLADCSKMSKLDVEGNKL 172 (543)
Q Consensus 128 -----~~~~~~~~~~~L~~L~l~~~~~---~-----~i~~~~~~~~~L~~L~l~~~~i 172 (543)
.+.+.+..-..|++|+++++.. . .+...+..-+.|+.|+++.+.+
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3445666777788888876532 3 2344556667777777766543
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=6.3e-06 Score=73.36 Aligned_cols=94 Identities=22% Similarity=0.216 Sum_probs=62.0
Q ss_pred EEcCccccccchH----HhcCCCCCCEEEcCCCcCccc---chhhhccCCCCEEEcCCCCCCCCChhhcccC--CccEEe
Q 009119 50 LILAHNNIEKLKE----DLRNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFD 120 (543)
Q Consensus 50 L~l~~~~~~~l~~----~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~ 120 (543)
++++.|....++. ...++++|+.|+|++|.+..+ +..+..+++|+.|+|++|.+..+ ..+..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 5556664443332 235678888888888887754 34566788888888888888765 2344444 888888
Q ss_pred cCCCCcc-ccc-------ccccCCCCCCEEEc
Q 009119 121 CSSNQLK-ELP-------SSLGRCLNLSDFKA 144 (543)
Q Consensus 121 l~~~~~~-~~~-------~~~~~~~~L~~L~l 144 (543)
+++|.+. .+| ..+..+++|+.|+-
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 8888876 233 23567788887754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.40 E-value=0.00018 Score=56.43 Aligned_cols=55 Identities=27% Similarity=0.391 Sum_probs=46.2
Q ss_pred CeeecCCCccc--ccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCc
Q 009119 12 GSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLS 81 (543)
Q Consensus 12 ~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~ 81 (543)
+.+++++++++ ++|..+. +++++|+|++|.++.++ ..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp---------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP---------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC---------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC---------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999998 9998773 45899999999999886 46888889999999888766
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0013 Score=51.35 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=39.3
Q ss_pred cEEEccCCcCC-CCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119 454 QILDLSYNIAS-LPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (543)
Q Consensus 454 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~ 511 (543)
..++.+++.++ ...+.. -.++|++|+|++|+|+.++.. +..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778877775 122221 234688888888888888765 456788888888888775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.17 E-value=0.16 Score=37.16 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=27.0
Q ss_pred cCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (543)
Q Consensus 414 ~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 460 (543)
.++.+....|.+|.+|+.+.|..+ ++.++..+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455555555666666666666532 4556656666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=92.01 E-value=0.25 Score=36.10 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCC
Q 009119 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (543)
Q Consensus 435 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 485 (543)
.+..++.+...+|.+|.+|+.+.+-.+ ++.+...+|..|.+|+.+.+.+.
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 356678888899999999999999864 67777888999999999999875
Done!