BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009120
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZP3|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D49n Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
N+CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 NNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|3ELO|A Chain A, Crystal Structure Of Human Pancreatic Prophospholipase A2
Length = 133
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CY A+K+ S FLL NPY + S S S C +NK + +C+
Sbjct: 56 DNCYDQAKKLDSCKFLLDNPYTHTYSYSCSG------SAITCSSKNKECEAFICN 104
>pdb|1KVW|A Chain A, Carboxylic Ester Hydrolase, Single Mutant H48q Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|2BP2|A Chain A, The Structure Of Bovine Pancreatic Prophospholipase A2 At
3.0 Angstroms Resolution
Length = 130
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 56 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 104
>pdb|1IRB|A Chain A, Carboxylic Ester Hydrolase
Length = 123
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|1KVX|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D99a Of Bovine
Pancreatic Pla2, 1.9 A Orthorhombic Form
Length = 123
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|3BP2|A Chain A, Role Of The N-Terminus In The Interaction Of Pancreatic
Phospholipase A2 With Aggregated Substrates. Properties
And Crystal Structure Of Transaminated Phospholipase A2
Length = 123
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|2ZP4|A Chain A, Carboxylic Ester Hydrolase, Single Mutant H48n Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|1CEH|A Chain A, Structure And Function Of The Catalytic Site Mutant
Asp99asn Of Phospholipase A2: Absence Of Conserved
Structural Water
Length = 123
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|4BP2|A Chain A, Crystallographic Refinement Of Bovine Pro-Phospholipase A2
At 1.6 Angstroms Resolution
Length = 130
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 56 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 104
>pdb|1BVM|A Chain A, Solution Nmr Structure Of Bovine Pancreatic
Phospholipase A2, 20 Structures
pdb|1G4I|A Chain A, Crystal Structure Of The Bovine Pancreatic Phospholipase
A2 At 0.97a
pdb|1BP2|A Chain A, Structure Of Bovine Pancreatic Phospholipase A2 At 1.7
Angstroms Resolution
pdb|1FDK|A Chain A, Carboxylic Ester Hydrolase (Pla2-Mj33 Inhibitor Complex)
pdb|1MKT|A Chain A, Carboxylic Ester Hydrolase, 1.72 Angstrom Trigonal Form
Of The Bovine Recombinant Pla2 Enzyme
pdb|1MKV|A Chain A, Carboxylic Ester Hydrolase Complex (Pla2 + Transition
State Analog Complex)
pdb|1UNE|A Chain A, Carboxylic Ester Hydrolase, 1.5 Angstrom Orthorhombic
Form Of The Bovine Recombinant Pla2
pdb|2BPP|A Chain A, Phospholipase A2 Engineering. X-Ray Structural And
Functional Evidence For The Interaction Of Lysine-56
With Substrates
Length = 123
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|1FX9|A Chain A, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Sulphate Ions)
pdb|1FX9|B Chain B, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Sulphate Ions)
pdb|1FXF|A Chain A, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Phosphate Ions)
pdb|1FXF|B Chain B, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Phosphate Ions)
pdb|1L8S|A Chain A, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Lpc-
Ether + Acetate + Phosphate Ions)
pdb|1L8S|B Chain B, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Lpc-
Ether + Acetate + Phosphate Ions)
pdb|2AZY|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Cholate
pdb|2AZZ|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Taurocholate
pdb|2B00|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Glycocholate
pdb|2B01|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Taurochenodeoxycholate
pdb|2B03|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Taurochenodeoxycholate
pdb|2B04|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Glycochenodeoxycholate
pdb|1P2P|A Chain A, Structure Of Porcine Pancreatic Phospholipase A2 At 2.6
Angstroms Resolution And Comparison With Bovine
Phospholipase A2
pdb|1PIR|A Chain A, Solution Structure Of Porcine Pancreatic Phospholipase
A2
pdb|1PIS|A Chain A, Solution Structure Of Porcine Pancreatic Phospholipase
A2
pdb|1SFV|A Chain A, Porcine Pancreas Phospholipase A2, Nmr, Minimized
Average Structure
pdb|1SFW|A Chain A, Porcine Pancreas Phospholipase A2, Nmr, 18 Structures
pdb|4P2P|A Chain A, An Independent Crystallographic Refinement Of Porcine
Phospholipase A2 At 2.4 Angstroms Resolution
pdb|3HSW|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With 2-Methoxycyclohexa-2-5-Diene-1,4-Dione
pdb|3L30|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
Complexed With Dihydroxyberberine
pdb|3FVI|A Chain A, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVI|B Chain B, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVI|C Chain C, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVI|D Chain D, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVJ|A Chain A, Crystal Structure Of Phospholipase A2 1b Crystallized In
The Presence Of Octyl Sulfate
pdb|3O4M|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With 1,2-Dihydroxybenzene
pdb|3QLM|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With N-Hexadecanoic Acid
pdb|4DBK|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
Complexed With Berberine
pdb|4G5I|A Chain A, Crystal Structure Of Porcine Pancreatic Pla2 In Complex
With Dbp
Length = 124
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CY+ A+ + S FL+ NPY +S S S+ C+ +N + +C+
Sbjct: 49 DNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTE------ITCNSKNNACEAFICN 97
>pdb|1HN4|A Chain A, Prophospholipase A2 Dimer Complexed With Mj33, Sulfate,
And Calcium
pdb|1HN4|B Chain B, Prophospholipase A2 Dimer Complexed With Mj33, Sulfate,
And Calcium
Length = 131
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CY+ A+ + S FL+ NPY +S S S+ C+ +N + +C+
Sbjct: 56 DNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTE------ITCNSKNNACEAFICN 104
>pdb|1KVY|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D49e
Coordinated To Calcium
Length = 123
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 23 SCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
+CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 50 NCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|2ZP5|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D49k Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 23 SCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
+CYK A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 50 NCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|1Y6O|A Chain A, Crystal Structure Of Disulfide Engineered Porcine
Pancreatic Phospholipase A2 To Group-X Isozyme In
Complex With Inhibitor Mj33 And Phosphate Ions
pdb|1Y6O|B Chain B, Crystal Structure Of Disulfide Engineered Porcine
Pancreatic Phospholipase A2 To Group-X Isozyme In
Complex With Inhibitor Mj33 And Phosphate Ions
pdb|1Y6P|A Chain A, Crystal Structure Of Disulfide Engineered Porcine
Pancratic Phospholipase A2 To Group-x Isozyme
pdb|1Y6P|B Chain B, Crystal Structure Of Disulfide Engineered Porcine
Pancratic Phospholipase A2 To Group-x Isozyme
Length = 131
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
+ CY+ A+ + S FL+ NPY +S S S+ C+ +N + +C+
Sbjct: 49 DCCYRDAKNLDSCKFLVDNPYTESYSYSCSNTE------ITCNSKNNACEAFICN 97
>pdb|1GH4|A Chain A, Structure Of The Triple Mutant (K56m, K120m, K121m) Of
Phospholipase A2
Length = 123
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAMKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|1BPQ|A Chain A, Phospholipase A2 Engineering. X-Ray Structural And
Functional Evidence For The Interaction Of Lysine-56
With Substrates
Length = 123
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++CYK A K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCYKQAMKLDSCKVLVDNPYTNNYSYSCSNNE------ITCSSENNACEAFICN 97
>pdb|1MKS|A Chain A, Carboxylic Ester Hydrolase, Trigonal Form Of The Triple
Mutant
pdb|1MKU|A Chain A, Carboxylic Ester Hydrolase, Orthorhombic Form Of The
Triple Mutant
Length = 123
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 22 NSCYKAARKMRSYGFLLRNPYGKSSQQSQSHQNPLFPSVTKCDLENKGFDTLVCD 76
++C+K A+K+ S L+ NPY + S S+ C EN + +C+
Sbjct: 49 DNCFKQAKKLDSCKVLVDNPYTNNFSYSCSNNE------ITCSSENNACEAFICN 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,576,230
Number of Sequences: 62578
Number of extensions: 553085
Number of successful extensions: 1043
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 22
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)