BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009121
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 247/465 (53%), Gaps = 25/465 (5%)
Query: 92 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSG 151
V L+V LPL V+ N +GV + VWWG+ E + +Y+WS
Sbjct: 13 VSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSA 72
Query: 152 YLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQF 206
Y + ++V+K GLK+ + FH IP+P W+ QIG+ IFYT+++G +
Sbjct: 73 YRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRN 132
Query: 207 KGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPDGELRYPS 265
+ LSL VD+ + G+T +++Y++F ESF+ + F+ I I +G G GELRYPS
Sbjct: 133 QEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYPS 192
Query: 266 HHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFF 325
+ + PG+GEFQC D+ M+ ++ + GN W + G A +Y+++P+ FF
Sbjct: 193 YPE-TQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPG-KGAGTYNDTPDKTEFF 250
Query: 326 KDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRS 385
+ NG ++++ G FFL+WYS++LI HG+ +L A+ F V+I K+ IH WY S
Sbjct: 251 RPNG-TYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVS 309
Query: 386 HPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIR 445
H +ELTAG YN A RDGY +A M A++ + +++ D QP E+ S+P+ L+ Q+
Sbjct: 310 HAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVL 369
Query: 446 TACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDL----------FTYQRMGAYFF 495
++ K ++V+G+N+ + QM L N V+L TY R+
Sbjct: 370 SSGWKEYIDVAGENALPRYDATAYNQMLLKL-RPNGVNLNGPPKLKMSGLTYLRLSDDLL 428
Query: 496 SPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQV 540
++F F KFV+ ++H D P ++ +V +N+ I +
Sbjct: 429 QTDNFELFKKFVK-----KMHADLDPSPNAISPAVLERSNSAITI 468
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+GQN+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 262 bits (669), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 228/441 (51%), Gaps = 31/441 (7%)
Query: 92 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSG 151
V+++V LPLD VS N V+GV + VWWG+ E + Y+WS
Sbjct: 6 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSA 65
Query: 152 YLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQF 206
Y + E+V+K GLKL + FH IP+P WV +G IFYTD G +
Sbjct: 66 YKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRN 125
Query: 207 KGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPS 265
L+L VD+ P+ G++ +Q+Y ++ SF+ + K F+ I I +GLGP GELRYPS
Sbjct: 126 IEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYPS 185
Query: 266 HHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFF 325
+ + + PG+GEF C D+ + + A A G+P W P+DA Y+++P FF
Sbjct: 186 YPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDAGQYNDTPERTQFF 242
Query: 326 KDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRS 385
+DNG ++ S G FFL+WYS+ LI HG+ +L A+ F V + KI +H WYK S
Sbjct: 243 RDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPS 301
Query: 386 HPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIR 445
H +ELTAG YN RDGY +A M ++ + ++ D QP ++ S+PE L+ Q+
Sbjct: 302 HAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQPPDAMSAPEELVQQVL 361
Query: 446 TACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRM 490
+A + G+ VS +N+ P + + +N LFG FTY R+
Sbjct: 362 SAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRL 415
Query: 491 GAYFFSPEHFPSFTKFVRNLN 511
+++ +F FV ++
Sbjct: 416 SNQLVEGQNYVNFKTFVDRMH 436
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 261 bits (667), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 261 bits (667), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 261 bits (666), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 238/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G+LR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + P +GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 5 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 64
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 65 WRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 124
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 125 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 184
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + P +GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 185 YPSYPQ-SQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 241
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 242 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 300
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 301 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 360
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 361 QVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDD 420
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 421 LLQKSNFNIFKKFV-----LKMHAD 440
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 226/441 (51%), Gaps = 31/441 (7%)
Query: 92 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSG 151
V+++V LPLD VS N V+GV + VWWG+ E + Y+WS
Sbjct: 10 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSA 69
Query: 152 YLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQF 206
Y + E+V+K GLKL + FH IP+P WV +G IFYTD G +
Sbjct: 70 YKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRN 129
Query: 207 KGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPS 265
L+L VD+ P+ G++ +Q+Y ++ SF+ + K F+ I I +GLGP GE+RYPS
Sbjct: 130 IEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPS 189
Query: 266 HHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFF 325
+ + + PG+GEF C D+ + + A A G+P W P+D Y+++P FF
Sbjct: 190 YPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDVGQYNDTPERTQFF 246
Query: 326 KDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRS 385
+DNG ++ S G FFL+WYS+ LI HG+ +L A+ F V + KI IH WYK S
Sbjct: 247 RDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPS 305
Query: 386 HPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIR 445
H +ELTAG YN RDGY +A M ++ + ++ D Q ++ S+PE L+ Q+
Sbjct: 306 HAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVL 365
Query: 446 TACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRM 490
+A + G+ V+ +N+ P + + +N LFG FTY R+
Sbjct: 366 SAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRL 419
Query: 491 GAYFFSPEHFPSFTKFVRNLN 511
+++ +F FV ++
Sbjct: 420 SNQLVEGQNYANFKTFVDRMH 440
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 24/445 (5%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + V WG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELR 262
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP GELR
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELR 188
Query: 263 YPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSN 322
YPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P S
Sbjct: 189 YPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPEST 245
Query: 323 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYK 382
FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH WYK
Sbjct: 246 GFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK 304
Query: 383 TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 442
+H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+ L+
Sbjct: 305 VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ 364
Query: 443 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAY 493
Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 365 QVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Query: 494 FFSPEHFPSFTKFVRNLNQLELHGD 518
+F F KFV L++H D
Sbjct: 425 LLQKSNFNIFKKFV-----LKMHAD 444
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 157/365 (43%), Gaps = 38/365 (10%)
Query: 127 VEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIP 181
V + VWWG E +++WS Y A V++ GLK + H IP
Sbjct: 35 VYAITTDVWWGYVESAGDNQFDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIP 94
Query: 182 LPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241
LP W+S G S + + D+SG S A+ L GK ++Y F E+F + +K
Sbjct: 95 LPSWLSSKG-SADEMQFKDESGY----ANSEALSPLWSGTGKQYDELYASFAENF-AGYK 148
Query: 242 PFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANG- 300
+ I I + GP GELRYPS++ A S PG G+FQ N +
Sbjct: 149 ----SIIPKIYLSGGPSGELRYPSYYPAAGWS-YPGRGKFQAYTETAKNAFRTAMNDKYG 203
Query: 301 -----NPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCL 355
N WG + + S P F NGG + S YG FLSWY S L H +
Sbjct: 204 SLDKINAAWGTK--LTSLSQINPPTDGDGFYTNGG-YNSAYGKDFLSWYQSVLEKHLGVI 260
Query: 356 LSLASSTFGET-GVSIYGKIPLIHSWYKTR---SHPSELTAGLYNTAKRDGYAAVAEMFA 411
+ A F GV I KI +H W H +E G Y+ Y + + F
Sbjct: 261 GAAAHKNFDSVFGVRIGAKISGLH-WQMNNPAMPHGTEQAGGYYD------YNRLIQKFK 313
Query: 412 KNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQ 471
+ +++SD ++S P +L+ + + N GV ++G+N+ TG GF++
Sbjct: 314 DADLDLTFTCLEMSDSGTA-PNYSLPSTLVDTVSSIANAKGVRLNGENALPTGGS-GFQK 371
Query: 472 MKKNL 476
+++ +
Sbjct: 372 IEEKI 376
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 164/376 (43%), Gaps = 37/376 (9%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEA 298
I I + GP GELRYPS + + + P G+FQ + L +L ++
Sbjct: 157 K-DVIAKIELSGGPAGELRYPS-YTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSL 214
Query: 299 NG-NPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLS 357
N N WG + + P+ F NG + S YG +L WY L +H +
Sbjct: 215 NEVNKAWGTKLISELAIL--PPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGE 270
Query: 358 LASSTFGET-GVSIYGKIPLIHSWYK--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNS 414
LA + F T V I KI +H Y T H +E AG YN Y+ + + F
Sbjct: 271 LAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAG-YND-----YSHLLDAFKSAK 324
Query: 415 CKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKK 474
+ ++++D+ E +S P++L+ I T N+ G+ ++G+N+ G ++++ +
Sbjct: 325 LDVTFTCLEMTDKGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAE 383
Query: 475 NLFGENVV--DLFTYQ 488
F N L YQ
Sbjct: 384 MAFNYNFAGFTLLRYQ 399
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 164/376 (43%), Gaps = 37/376 (9%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEA 298
I I + GP GELRYPS + + + P G+FQ + L +L ++
Sbjct: 157 K-DVIAKIYLSGGPAGELRYPS-YTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSL 214
Query: 299 NG-NPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLS 357
N N WG + + P+ F NG + S YG +L WY L +H +
Sbjct: 215 NEVNKAWGTKLISELAIL--PPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGE 270
Query: 358 LASSTFGET-GVSIYGKIPLIHSWYK--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNS 414
LA + F T V I KI +H Y T H +E AG YN Y+ + + F
Sbjct: 271 LAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAG-YND-----YSHLLDAFKSAK 324
Query: 415 CKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKK 474
+ ++++D+ E +S P++L+ I T N+ G+ ++G+N+ G ++++ +
Sbjct: 325 LDVTFTCLEMTDKGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAE 383
Query: 475 NLFGENVV--DLFTYQ 488
F N L YQ
Sbjct: 384 MAFNYNFAGFTLLRYQ 399
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 164/376 (43%), Gaps = 37/376 (9%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEA 298
I I + GP GELRYPS + + + P G+FQ + L +L ++
Sbjct: 157 K-DVIAKIFLSGGPAGELRYPS-YTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSL 214
Query: 299 NG-NPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLS 357
N N WG + + P+ F NG + S YG +L WY L +H +
Sbjct: 215 NEVNKAWGTKLISELAIL--PPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGE 270
Query: 358 LASSTFGET-GVSIYGKIPLIHSWYK--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNS 414
LA + F T V I KI +H Y T H +E AG YN Y+ + + F
Sbjct: 271 LAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAG-YND-----YSHLLDAFKSAK 324
Query: 415 CKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKK 474
+ ++++D+ E +S P++L+ I T N+ G+ ++G+N+ G ++++ +
Sbjct: 325 LDVTFTCLEMTDKGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAE 383
Query: 475 NLFGENVV--DLFTYQ 488
F N L YQ
Sbjct: 384 MAFNYNFAGFTLLRYQ 399
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 164/376 (43%), Gaps = 37/376 (9%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AIMVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEA 298
I I + GP GELRYPS + + + P G+FQ + L +L ++
Sbjct: 157 K-DVIAKIELSGGPAGELRYPS-YTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSL 214
Query: 299 NG-NPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLS 357
N N WG + + P+ F NG + S YG +L WY L +H +
Sbjct: 215 NEVNKAWGTKLISELAIL--PPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGE 270
Query: 358 LASSTFGET-GVSIYGKIPLIHSWYK--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNS 414
LA + F T V I KI +H Y T H +E AG YN Y+ + + F
Sbjct: 271 LAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAG-YND-----YSHLLDAFKSAK 324
Query: 415 CKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKK 474
+ ++++D+ E +S P++L+ I T N+ G+ ++G+N+ G ++++ +
Sbjct: 325 LDVNFTCLEMTDKGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAE 383
Query: 475 NLFGENVV--DLFTYQ 488
F N L YQ
Sbjct: 384 MAFNYNFAGFTLLRYQ 399
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 163/376 (43%), Gaps = 37/376 (9%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEA 298
I I + GP G LRYPS + + + P G+FQ + L +L ++
Sbjct: 157 K-DVIAKIYLSGGPAGALRYPS-YTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSL 214
Query: 299 NG-NPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLS 357
N N WG + + P+ F NG + S YG +L WY L +H +
Sbjct: 215 NEVNKAWGTKLISELAIL--PPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGE 270
Query: 358 LASSTFGET-GVSIYGKIPLIHSWYK--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNS 414
LA + F T V I KI +H Y T H +E AG YN Y+ + + F
Sbjct: 271 LAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAG-YND-----YSHLLDAFKSAK 324
Query: 415 CKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKK 474
+ ++++D+ E +S P++L+ I T N+ G+ ++G+N+ G ++++ +
Sbjct: 325 LDVTFTCLEMTDKGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAE 383
Query: 475 NLFGENVV--DLFTYQ 488
F N L YQ
Sbjct: 384 MAFNYNFAGFTLLRYQ 399
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 407 AEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 457
A++F +N CKMI+ G ++ + +L + A N GV VSG
Sbjct: 340 ADLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAA-NAGGVAVSG 389
>pdb|3Q87|A Chain A, Structure Of Eukaryotic Translation Termination Complex
Methyltransferase Mtq2-Trm112
Length = 125
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 438 ESLLAQIRTACNKHGVEVSGQN-SSVTGAPGGFEQMKKNLFGENVVD 483
E L + + + + HG E+S Q+ SS PG E++K+ LFG +VV+
Sbjct: 51 ERLKSLVNSLRDFHGRELSEQDISSFVENPGDDEKIKEFLFGIDVVE 97
>pdb|4EPS|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_04982)
From Bacteroides Ovatus Atcc 8483 At 1.85 A Resolution
Length = 510
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 348 LISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPS 388
L SH NC+ L S + ETG IH W+ T S S
Sbjct: 325 LRSHPNCVHGLVXSLYTETGKFSPALTQSIHDWFXTTSFTS 365
>pdb|3BH0|A Chain A, Atpase Domain Of G40p
Length = 315
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 454 EVSGQNSSVTGAPGGFEQMKKNLFG---ENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNL 510
E+ + ++TG P GF ++ + +G N V + MG F+ + + + N
Sbjct: 40 EIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND 96
Query: 511 NQLELHGDDLPVEEEVTESVHTNANTNIQ-VQAA 543
+ + LH ++ +E + + T + N Q ++AA
Sbjct: 97 DVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAA 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,178,383
Number of Sequences: 62578
Number of extensions: 681186
Number of successful extensions: 1686
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1566
Number of HSP's gapped (non-prelim): 32
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)