Query 009121
Match_columns 543
No_of_seqs 137 out of 203
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 20:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00197 beta-amylase; Provisi 100.0 2E-186 4E-191 1471.1 45.5 458 82-540 96-566 (573)
2 PLN02803 beta-amylase 100.0 2E-184 4E-189 1452.5 46.8 459 82-542 76-546 (548)
3 PLN02801 beta-amylase 100.0 4E-181 8E-186 1421.8 44.8 448 84-535 8-470 (517)
4 PLN02161 beta-amylase 100.0 9E-181 2E-185 1418.4 44.2 431 83-513 83-530 (531)
5 PLN02905 beta-amylase 100.0 2E-178 4E-183 1421.0 43.7 428 82-514 255-696 (702)
6 PLN02705 beta-amylase 100.0 1E-177 3E-182 1411.4 45.2 434 77-515 232-677 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 5E-159 1E-163 1233.8 25.7 388 95-506 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.9 2.7E-22 5.9E-27 206.8 8.2 212 111-377 8-238 (374)
9 COG1874 LacA Beta-galactosidas 99.6 4E-14 8.8E-19 157.5 15.5 201 111-364 28-250 (673)
10 PF01301 Glyco_hydro_35: Glyco 98.8 2.1E-08 4.6E-13 103.4 8.8 116 111-253 22-146 (319)
11 PLN03059 beta-galactosidase; P 98.2 1.1E-05 2.4E-10 92.7 13.5 141 110-300 56-213 (840)
12 TIGR03356 BGL beta-galactosida 98.0 1.6E-05 3.4E-10 85.3 9.1 111 108-253 49-164 (427)
13 PF00232 Glyco_hydro_1: Glycos 97.6 0.00013 2.8E-09 78.6 7.2 111 108-253 53-169 (455)
14 PF00150 Cellulase: Cellulase 97.6 0.00029 6.2E-09 68.3 8.8 103 113-253 21-127 (281)
15 PRK09852 cryptic 6-phospho-bet 97.3 0.0006 1.3E-08 74.5 8.6 111 108-253 66-183 (474)
16 PRK15014 6-phospho-beta-glucos 97.2 0.00094 2E-08 73.0 8.5 112 108-254 64-182 (477)
17 PRK13511 6-phospho-beta-galact 97.2 0.00076 1.6E-08 73.4 7.6 111 108-254 49-164 (469)
18 KOG0496 Beta-galactosidase [Ca 97.2 0.0015 3.2E-08 73.7 9.1 138 111-256 47-203 (649)
19 smart00633 Glyco_10 Glycosyl h 97.1 0.02 4.4E-07 57.1 15.2 193 136-427 3-195 (254)
20 PLN02849 beta-glucosidase 97.1 0.0044 9.6E-08 68.4 11.5 111 108-253 74-190 (503)
21 PLN02814 beta-glucosidase 97.0 0.0023 5E-08 70.6 8.9 111 108-253 72-188 (504)
22 TIGR01233 lacG 6-phospho-beta- 97.0 0.0024 5.3E-08 69.6 8.6 111 107-253 47-162 (467)
23 PRK09589 celA 6-phospho-beta-g 97.0 0.0026 5.7E-08 69.6 8.8 111 108-253 62-179 (476)
24 PLN02998 beta-glucosidase 96.9 0.0025 5.3E-08 70.2 8.2 111 108-253 77-193 (497)
25 PRK09593 arb 6-phospho-beta-gl 96.7 0.0056 1.2E-07 67.1 8.5 112 108-254 68-186 (478)
26 PF14871 GHL6: Hypothetical gl 96.5 0.027 5.8E-07 52.1 10.6 108 117-242 4-121 (132)
27 COG2723 BglB Beta-glucosidase/ 96.3 0.065 1.4E-06 59.0 13.4 149 106-298 52-206 (460)
28 PF02638 DUF187: Glycosyl hydr 95.9 0.46 1E-05 49.5 16.9 227 108-420 14-258 (311)
29 COG3693 XynA Beta-1,4-xylanase 95.7 0.12 2.7E-06 54.7 11.8 199 129-428 59-264 (345)
30 PF00331 Glyco_hydro_10: Glyco 94.6 0.27 5.8E-06 51.2 10.5 217 118-431 26-250 (320)
31 PF01229 Glyco_hydro_39: Glyco 94.5 0.064 1.4E-06 58.6 5.9 98 113-242 39-147 (486)
32 PF07745 Glyco_hydro_53: Glyco 93.9 0.25 5.4E-06 52.3 8.8 57 116-177 27-83 (332)
33 PF14488 DUF4434: Domain of un 89.7 1.1 2.3E-05 43.0 6.9 58 111-172 18-85 (166)
34 KOG0626 Beta-glucosidase, lact 89.0 1.6 3.4E-05 49.2 8.5 108 111-252 89-203 (524)
35 PRK11572 copper homeostasis pr 88.3 3.3 7.2E-05 42.6 9.7 73 91-178 51-127 (248)
36 cd06592 GH31_glucosidase_KIAA1 85.7 7.3 0.00016 40.3 10.7 115 110-237 27-151 (303)
37 TIGR01093 aroD 3-dehydroquinat 85.3 5 0.00011 39.7 9.0 110 118-262 83-194 (228)
38 PF03659 Glyco_hydro_71: Glyco 84.6 2.4 5.2E-05 45.8 6.8 54 111-173 15-68 (386)
39 cd06593 GH31_xylosidase_YicI Y 84.5 12 0.00026 38.4 11.5 88 109-205 20-114 (308)
40 cd00502 DHQase_I Type I 3-dehy 84.3 12 0.00026 36.8 11.1 142 114-294 77-221 (225)
41 PF00290 Trp_syntA: Tryptophan 84.1 12 0.00025 38.7 11.2 111 89-240 85-197 (259)
42 PF03932 CutC: CutC family; I 82.5 2.2 4.7E-05 42.5 5.1 70 89-173 48-120 (201)
43 cd04724 Tryptophan_synthase_al 81.5 14 0.00031 37.0 10.5 120 91-258 76-197 (242)
44 PRK02412 aroD 3-dehydroquinate 81.2 11 0.00023 38.3 9.6 115 113-261 95-211 (253)
45 COG2730 BglC Endoglucanase [Ca 81.1 11 0.00024 40.6 10.2 102 116-252 76-186 (407)
46 PF00128 Alpha-amylase: Alpha 80.4 3.8 8.3E-05 39.8 5.9 61 112-175 3-78 (316)
47 PF10566 Glyco_hydro_97: Glyco 79.6 3.2 6.9E-05 43.2 5.3 102 90-213 85-186 (273)
48 PRK13111 trpA tryptophan synth 79.4 7.4 0.00016 39.9 7.8 90 90-205 88-178 (258)
49 smart00642 Aamy Alpha-amylase 78.1 8.7 0.00019 36.6 7.4 62 109-172 15-90 (166)
50 COG3867 Arabinogalactan endo-1 77.2 5.4 0.00012 42.7 6.1 60 115-176 65-128 (403)
51 COG1649 Uncharacterized protei 76.7 32 0.0007 38.0 12.1 150 106-293 57-226 (418)
52 PF02065 Melibiase: Melibiase; 76.2 15 0.00032 40.1 9.3 74 111-188 56-145 (394)
53 PF01261 AP_endonuc_2: Xylose 75.0 3.5 7.7E-05 37.9 3.8 47 119-170 1-47 (213)
54 PRK09856 fructoselysine 3-epim 74.6 8.9 0.00019 37.9 6.7 50 114-170 14-67 (275)
55 PRK10658 putative alpha-glucos 74.5 22 0.00047 41.3 10.6 87 111-206 281-374 (665)
56 PRK10785 maltodextrin glucosid 74.2 26 0.00056 39.9 11.0 110 111-234 177-312 (598)
57 PF08821 CGGC: CGGC domain; I 73.2 11 0.00024 34.1 6.3 56 112-173 51-107 (107)
58 CHL00200 trpA tryptophan synth 73.1 33 0.00072 35.4 10.6 91 90-206 90-181 (263)
59 PRK01060 endonuclease IV; Prov 72.8 7.7 0.00017 38.6 5.8 63 97-166 1-63 (281)
60 PRK13209 L-xylulose 5-phosphat 72.6 7 0.00015 38.9 5.5 67 98-169 8-76 (283)
61 TIGR00433 bioB biotin syntheta 72.2 9.3 0.0002 38.5 6.3 52 116-169 123-177 (296)
62 PF01055 Glyco_hydro_31: Glyco 72.0 13 0.00029 39.8 7.7 86 110-205 40-134 (441)
63 TIGR00542 hxl6Piso_put hexulos 71.4 7.9 0.00017 38.7 5.6 55 112-169 15-71 (279)
64 cd07944 DRE_TIM_HOA_like 4-hyd 71.2 31 0.00067 35.3 9.8 76 116-206 85-165 (266)
65 cd03465 URO-D_like The URO-D _ 70.3 25 0.00054 35.8 9.0 118 115-241 170-298 (330)
66 TIGR02402 trehalose_TreZ malto 68.0 10 0.00022 42.7 6.0 61 111-176 109-187 (542)
67 TIGR01515 branching_enzym alph 67.8 9.7 0.00021 43.4 5.9 58 112-177 155-234 (613)
68 PRK08195 4-hyroxy-2-oxovalerat 67.8 26 0.00057 37.2 8.7 90 117-240 92-186 (337)
69 TIGR02631 xylA_Arthro xylose i 67.0 5.9 0.00013 42.7 3.8 52 113-169 32-87 (382)
70 PF01487 DHquinase_I: Type I 3 65.8 63 0.0014 31.7 10.4 122 102-261 63-188 (224)
71 PHA00442 host recBCD nuclease 65.7 6.4 0.00014 32.2 2.8 27 117-162 30-56 (59)
72 TIGR03217 4OH_2_O_val_ald 4-hy 65.5 37 0.0008 36.1 9.3 92 116-241 90-186 (333)
73 TIGR02456 treS_nterm trehalose 64.6 58 0.0013 36.5 11.1 66 109-177 24-104 (539)
74 cd06602 GH31_MGAM_SI_GAA This 64.5 58 0.0013 34.4 10.5 121 109-238 20-152 (339)
75 PLN02591 tryptophan synthase 64.5 26 0.00055 36.0 7.6 90 90-205 77-167 (250)
76 cd06565 GH20_GcnA-like Glycosy 64.2 61 0.0013 33.7 10.5 134 108-243 12-177 (301)
77 PRK13210 putative L-xylulose 5 63.4 17 0.00037 35.9 6.1 52 114-169 17-71 (284)
78 PLN02361 alpha-amylase 63.1 18 0.00038 39.6 6.5 60 111-173 27-100 (401)
79 cd06604 GH31_glucosidase_II_Ma 61.9 81 0.0018 33.1 11.0 85 109-204 20-113 (339)
80 TIGR02104 pulA_typeI pullulana 60.3 12 0.00026 42.5 4.8 62 114-175 165-255 (605)
81 PRK12313 glycogen branching en 60.2 15 0.00032 41.9 5.6 55 110-172 167-240 (633)
82 PLN02808 alpha-galactosidase 60.1 18 0.00038 39.6 5.9 56 111-166 47-113 (386)
83 TIGR03234 OH-pyruv-isom hydrox 58.7 20 0.00044 35.1 5.6 42 114-167 15-56 (254)
84 PRK13125 trpA tryptophan synth 58.6 68 0.0015 32.2 9.4 70 115-200 90-159 (244)
85 PLN02389 biotin synthase 57.4 21 0.00046 38.6 5.9 46 115-166 177-229 (379)
86 TIGR02403 trehalose_treC alpha 57.3 30 0.00066 38.8 7.3 66 109-176 23-102 (543)
87 COG1619 LdcA Uncharacterized p 56.7 31 0.00067 36.7 6.8 93 102-198 15-107 (313)
88 PRK13398 3-deoxy-7-phosphohept 56.4 48 0.001 34.3 8.0 72 100-173 28-99 (266)
89 PRK10933 trehalose-6-phosphate 56.0 28 0.00061 39.3 6.8 65 109-176 29-108 (551)
90 cd07941 DRE_TIM_LeuA3 Desulfob 55.8 71 0.0015 32.6 9.1 104 117-241 82-194 (273)
91 COG3142 CutC Uncharacterized p 54.9 25 0.00053 36.3 5.5 85 90-189 50-140 (241)
92 PF01791 DeoC: DeoC/LacD famil 54.2 9.6 0.00021 37.7 2.5 53 116-169 79-131 (236)
93 PRK14511 maltooligosyl trehalo 54.1 37 0.00081 40.8 7.6 58 112-172 19-89 (879)
94 PRK09989 hypothetical protein; 54.0 27 0.00059 34.6 5.6 42 114-167 16-57 (258)
95 PRK04302 triosephosphate isome 53.8 29 0.00063 34.2 5.8 48 116-173 75-122 (223)
96 TIGR02102 pullulan_Gpos pullul 53.2 24 0.00051 43.4 6.0 57 111-167 478-572 (1111)
97 PF01026 TatD_DNase: TatD rela 53.0 81 0.0018 31.5 8.8 46 115-173 16-62 (255)
98 cd06591 GH31_xylosidase_XylS X 52.6 1.5E+02 0.0033 30.9 11.1 85 110-206 21-115 (319)
99 PF13653 GDPD_2: Glycerophosph 52.3 14 0.00031 26.6 2.4 17 117-133 11-27 (30)
100 PRK09441 cytoplasmic alpha-amy 51.4 28 0.00061 38.2 5.8 64 112-175 21-107 (479)
101 PF10566 Glyco_hydro_97: Glyco 51.3 47 0.001 34.7 7.0 61 111-173 30-94 (273)
102 cd06600 GH31_MGAM-like This fa 49.9 1.7E+02 0.0036 30.6 10.9 87 109-204 20-113 (317)
103 PLN02877 alpha-amylase/limit d 49.6 28 0.00062 42.2 5.8 55 116-172 376-486 (970)
104 PRK09875 putative hydrolase; P 49.5 59 0.0013 34.0 7.5 67 106-187 27-94 (292)
105 PRK09997 hydroxypyruvate isome 49.3 27 0.0006 34.5 4.9 41 114-166 16-56 (258)
106 TIGR01463 mtaA_cmuA methyltran 49.3 30 0.00064 35.9 5.3 59 116-177 183-244 (340)
107 cd06603 GH31_GANC_GANAB_alpha 49.2 1.5E+02 0.0031 31.3 10.4 117 109-236 20-145 (339)
108 PLN02692 alpha-galactosidase 49.2 33 0.00071 37.9 5.8 56 111-166 71-137 (412)
109 PF05706 CDKN3: Cyclin-depende 49.1 8.7 0.00019 37.6 1.3 47 112-166 57-103 (168)
110 PLN02229 alpha-galactosidase 48.7 28 0.00061 38.6 5.2 55 111-166 78-144 (427)
111 PRK12595 bifunctional 3-deoxy- 48.5 71 0.0015 34.5 8.1 74 91-173 117-190 (360)
112 PRK03906 mannonate dehydratase 47.6 24 0.00052 38.5 4.4 51 118-172 15-65 (385)
113 PF02836 Glyco_hydro_2_C: Glyc 47.6 37 0.0008 34.5 5.6 49 110-172 33-81 (298)
114 PLN00196 alpha-amylase; Provis 47.1 45 0.00098 36.7 6.5 59 111-172 42-114 (428)
115 PRK05692 hydroxymethylglutaryl 46.8 96 0.0021 32.2 8.5 104 116-241 82-198 (287)
116 cd06599 GH31_glycosidase_Aec37 46.3 1E+02 0.0022 32.1 8.7 85 112-205 28-121 (317)
117 TIGR03551 F420_cofH 7,8-dideme 46.1 20 0.00043 37.7 3.4 58 115-172 140-201 (343)
118 TIGR03699 mena_SCO4550 menaqui 46.0 22 0.00049 37.0 3.8 53 116-168 143-199 (340)
119 TIGR00695 uxuA mannonate dehyd 45.5 30 0.00065 38.0 4.7 51 118-172 15-65 (394)
120 PLN02746 hydroxymethylglutaryl 45.4 1.2E+02 0.0026 32.8 9.1 103 116-240 124-239 (347)
121 PRK15452 putative protease; Pr 45.4 33 0.00072 38.0 5.2 40 90-134 58-97 (443)
122 cd01299 Met_dep_hydrolase_A Me 45.3 62 0.0013 33.0 6.8 63 109-175 116-181 (342)
123 cd06597 GH31_transferase_CtsY 45.1 2.3E+02 0.0049 30.1 11.1 94 109-205 20-140 (340)
124 PTZ00445 p36-lilke protein; Pr 44.8 62 0.0013 33.1 6.5 71 108-181 24-106 (219)
125 cd00465 URO-D_CIMS_like The UR 44.4 37 0.00081 34.2 5.0 53 114-166 145-202 (306)
126 TIGR00262 trpA tryptophan synt 43.6 67 0.0015 32.8 6.7 105 113-258 102-208 (256)
127 PF14587 Glyco_hydr_30_2: O-Gl 43.4 97 0.0021 34.1 8.1 83 142-252 93-178 (384)
128 PRK15108 biotin synthase; Prov 43.0 2.6E+02 0.0056 29.8 11.2 55 111-172 77-131 (345)
129 cd07943 DRE_TIM_HOA 4-hydroxy- 43.0 1.1E+02 0.0024 30.9 8.1 91 117-241 89-184 (263)
130 COG2019 AdkA Archaeal adenylat 42.6 34 0.00075 34.1 4.2 113 129-251 38-168 (189)
131 cd02742 GH20_hexosaminidase Be 41.9 2.5E+02 0.0053 29.2 10.6 135 106-243 9-183 (303)
132 PRK07094 biotin synthase; Prov 41.3 44 0.00095 34.4 5.0 52 116-168 129-183 (323)
133 PF14307 Glyco_tran_WbsX: Glyc 41.3 2.6E+02 0.0056 29.6 10.8 135 109-303 54-191 (345)
134 cd07945 DRE_TIM_CMS Leptospira 41.1 1.2E+02 0.0026 31.4 8.1 88 117-206 78-174 (280)
135 COG1856 Uncharacterized homolo 41.0 63 0.0014 33.7 5.9 56 116-173 100-161 (275)
136 PRK07360 FO synthase subunit 2 40.4 29 0.00064 37.0 3.7 53 115-172 162-223 (371)
137 PRK08508 biotin synthase; Prov 40.3 35 0.00077 34.9 4.1 46 116-167 102-154 (279)
138 TIGR00423 radical SAM domain p 40.1 34 0.00074 35.3 4.1 56 115-170 106-165 (309)
139 TIGR02103 pullul_strch alpha-1 39.8 36 0.00079 41.0 4.6 24 116-139 289-314 (898)
140 PF00682 HMGL-like: HMGL-like 39.5 2.1E+02 0.0045 28.0 9.2 106 111-242 65-181 (237)
141 TIGR02090 LEU1_arch isopropylm 39.0 1.3E+02 0.0028 32.3 8.2 86 115-205 73-167 (363)
142 cd03174 DRE_TIM_metallolyase D 38.9 3E+02 0.0065 27.0 10.3 104 116-241 77-189 (265)
143 PRK08508 biotin synthase; Prov 38.9 2.4E+02 0.0053 28.9 9.9 55 111-171 41-96 (279)
144 PRK14706 glycogen branching en 38.6 75 0.0016 36.8 6.8 57 109-172 163-237 (639)
145 PRK09505 malS alpha-amylase; R 38.6 67 0.0014 37.6 6.4 60 111-172 228-312 (683)
146 TIGR00677 fadh2_euk methylenet 38.3 65 0.0014 33.4 5.7 66 115-191 147-225 (281)
147 TIGR03849 arch_ComA phosphosul 37.6 68 0.0015 33.1 5.6 50 113-170 71-120 (237)
148 PRK05402 glycogen branching en 37.2 78 0.0017 37.0 6.7 59 109-172 261-335 (726)
149 TIGR03700 mena_SCO4494 putativ 37.1 39 0.00084 35.7 3.9 58 115-172 149-210 (351)
150 TIGR03822 AblA_like_2 lysine-2 37.0 1.5E+02 0.0033 31.1 8.2 108 117-246 188-300 (321)
151 PRK08445 hypothetical protein; 36.8 46 0.00099 35.5 4.4 58 115-172 143-204 (348)
152 PLN02960 alpha-amylase 36.5 74 0.0016 38.5 6.4 56 110-172 413-486 (897)
153 COG3250 LacZ Beta-galactosidas 36.4 80 0.0017 37.8 6.7 78 107-199 315-401 (808)
154 PRK06256 biotin synthase; Vali 36.3 37 0.0008 35.2 3.6 49 116-170 152-207 (336)
155 cd06594 GH31_glucosidase_YihQ 35.6 2.8E+02 0.0061 29.1 10.0 117 111-236 21-151 (317)
156 PF04476 DUF556: Protein of un 35.1 51 0.0011 34.0 4.3 44 119-166 137-183 (235)
157 COG5561 Predicted metal-bindin 34.8 83 0.0018 28.5 4.9 54 113-173 42-98 (101)
158 COG1082 IolE Sugar phosphate i 34.6 70 0.0015 31.3 5.1 50 112-168 14-63 (274)
159 PF09184 PPP4R2: PPP4R2; Inte 34.6 9.3 0.0002 40.0 -1.1 31 483-513 96-127 (288)
160 PRK02227 hypothetical protein; 34.0 51 0.0011 34.0 4.1 46 117-166 135-183 (238)
161 PRK15108 biotin synthase; Prov 33.3 67 0.0015 34.1 5.0 45 116-166 136-187 (345)
162 cd00958 DhnA Class I fructose- 32.9 71 0.0015 31.3 4.8 57 111-173 74-130 (235)
163 cd06568 GH20_SpHex_like A subg 32.6 3.6E+02 0.0078 28.6 10.2 124 106-243 11-187 (329)
164 cd07948 DRE_TIM_HCS Saccharomy 32.3 1.8E+02 0.0039 29.8 7.7 83 116-205 74-167 (262)
165 PF01902 ATP_bind_4: ATP-bindi 32.3 69 0.0015 32.2 4.7 59 403-461 123-181 (218)
166 PRK12677 xylose isomerase; Pro 32.3 75 0.0016 34.4 5.2 48 114-166 32-83 (384)
167 TIGR02401 trehalose_TreY malto 31.6 1.3E+02 0.0029 36.1 7.5 58 112-172 15-85 (825)
168 smart00854 PGA_cap Bacterial c 31.5 93 0.002 30.8 5.4 56 111-173 158-213 (239)
169 COG2159 Predicted metal-depend 31.4 1.7E+02 0.0036 30.5 7.4 75 114-199 114-196 (293)
170 PF04187 DUF399: Protein of un 30.9 35 0.00076 33.8 2.3 73 147-242 86-158 (213)
171 PF01261 AP_endonuc_2: Xylose 30.9 55 0.0012 30.0 3.5 61 112-174 70-134 (213)
172 PRK05926 hypothetical protein; 30.8 60 0.0013 35.1 4.2 58 115-172 168-229 (370)
173 cd03308 CmuA_CmuC_like CmuA_Cm 30.7 80 0.0017 33.8 5.1 74 92-170 173-273 (378)
174 PRK12331 oxaloacetate decarbox 30.5 1.3E+02 0.0028 33.5 6.8 51 112-172 95-145 (448)
175 TIGR01464 hemE uroporphyrinoge 30.1 78 0.0017 32.9 4.8 75 118-202 185-263 (338)
176 smart00729 Elp3 Elongator prot 30.1 2.2E+02 0.0047 25.8 7.2 55 112-172 135-189 (216)
177 PF05378 Hydant_A_N: Hydantoin 29.7 1.1E+02 0.0024 29.5 5.5 45 111-163 132-176 (176)
178 TIGR03679 arCOG00187 arCOG0018 29.3 1E+02 0.0023 30.5 5.3 59 403-461 124-182 (218)
179 PF14542 Acetyltransf_CG: GCN5 28.7 9.9 0.00022 32.0 -1.7 21 152-172 44-64 (78)
180 PLN02447 1,4-alpha-glucan-bran 28.4 1.1E+02 0.0024 36.5 6.0 58 108-172 245-320 (758)
181 TIGR03056 bchO_mg_che_rel puta 28.4 2.3E+02 0.005 26.8 7.3 77 372-453 11-94 (278)
182 cd03307 Mta_CmuA_like MtaA_Cmu 28.3 65 0.0014 33.3 3.8 45 117-161 175-222 (326)
183 PF02679 ComA: (2R)-phospho-3- 28.2 74 0.0016 32.9 4.2 86 90-188 66-152 (244)
184 TIGR02884 spore_pdaA delta-lac 28.2 1.3E+02 0.0027 29.8 5.7 82 404-493 142-223 (224)
185 cd07939 DRE_TIM_NifV Streptomy 28.1 2.1E+02 0.0045 28.9 7.3 84 116-206 72-166 (259)
186 COG1099 Predicted metal-depend 28.1 43 0.00092 34.7 2.4 56 116-173 14-73 (254)
187 PRK13210 putative L-xylulose 5 28.0 1.1E+02 0.0024 30.3 5.2 59 113-173 94-154 (284)
188 cd08627 PI-PLCc_gamma1 Catalyt 27.9 49 0.0011 34.0 2.8 57 106-165 23-85 (229)
189 COG0159 TrpA Tryptophan syntha 27.5 2.4E+02 0.0052 29.6 7.7 93 87-205 90-183 (265)
190 COG3603 Uncharacterized conser 27.5 1E+02 0.0023 29.1 4.6 44 82-128 82-125 (128)
191 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.4 1.6E+02 0.0035 30.2 6.4 98 111-240 89-191 (275)
192 PRK08673 3-deoxy-7-phosphohept 27.3 1.6E+02 0.0035 31.6 6.6 67 100-173 94-165 (335)
193 TIGR00419 tim triosephosphate 27.2 1.2E+02 0.0026 30.3 5.4 46 117-172 72-117 (205)
194 cd08560 GDPD_EcGlpQ_like_1 Gly 26.8 79 0.0017 34.1 4.2 49 114-166 246-294 (356)
195 cd06564 GH20_DspB_LnbB-like Gl 26.6 3.5E+02 0.0076 28.3 8.9 125 106-243 10-192 (326)
196 cd00019 AP2Ec AP endonuclease 26.3 1.7E+02 0.0037 29.2 6.3 52 113-166 10-62 (279)
197 PRK06252 methylcobalamin:coenz 26.1 76 0.0017 32.8 3.9 47 116-162 183-232 (339)
198 PLN02784 alpha-amylase 26.0 1.5E+02 0.0032 36.1 6.5 56 112-170 520-588 (894)
199 PRK03705 glycogen debranching 25.9 86 0.0019 36.5 4.6 81 118-204 184-295 (658)
200 COG2876 AroA 3-deoxy-D-arabino 25.8 1.4E+02 0.0031 31.6 5.7 55 110-164 226-282 (286)
201 cd07585 nitrilase_7 Uncharacte 25.7 3.3E+02 0.0072 26.7 8.1 60 111-172 17-82 (261)
202 PRK12568 glycogen branching en 25.4 1.6E+02 0.0035 35.0 6.7 59 109-172 265-339 (730)
203 cd07381 MPP_CapA CapA and rela 25.4 1.8E+02 0.0038 28.6 6.1 57 110-173 159-215 (239)
204 PRK09936 hypothetical protein; 25.3 1.7E+02 0.0038 31.2 6.3 61 111-189 36-102 (296)
205 smart00518 AP2Ec AP endonuclea 25.3 1.7E+02 0.0036 29.0 6.0 51 114-166 11-61 (273)
206 PF13200 DUF4015: Putative gly 25.2 8.7E+02 0.019 26.1 13.3 163 108-302 8-185 (316)
207 PF03786 UxuA: D-mannonate deh 25.1 37 0.0008 36.8 1.4 221 118-422 16-247 (351)
208 cd08592 PI-PLCc_gamma Catalyti 24.9 58 0.0013 33.4 2.7 57 106-165 23-85 (229)
209 TIGR00010 hydrolase, TatD fami 24.9 1.9E+02 0.0041 27.8 6.1 46 115-173 17-62 (252)
210 PLN02417 dihydrodipicolinate s 24.7 2.4E+02 0.0053 28.9 7.2 98 110-222 80-180 (280)
211 PF02126 PTE: Phosphotriestera 24.5 1.7E+02 0.0036 31.0 6.0 63 111-187 36-98 (308)
212 COG1809 (2R)-phospho-3-sulfola 24.4 1.5E+02 0.0032 30.9 5.4 46 113-166 90-135 (258)
213 smart00481 POLIIIAc DNA polyme 24.3 2.1E+02 0.0045 22.6 5.3 43 114-167 16-58 (67)
214 PF14488 DUF4434: Domain of un 23.9 2.8E+02 0.006 26.7 6.9 136 127-299 1-151 (166)
215 cd00530 PTE Phosphotriesterase 23.8 2.4E+02 0.0053 28.2 6.9 56 108-173 27-82 (293)
216 PRK12858 tagatose 1,6-diphosph 23.8 1.1E+02 0.0024 32.9 4.6 53 114-166 107-159 (340)
217 PRK14507 putative bifunctional 23.7 3.7E+02 0.0081 35.1 9.7 60 110-172 755-827 (1693)
218 TIGR00542 hxl6Piso_put hexulos 23.7 1.5E+02 0.0033 29.7 5.4 59 113-173 94-154 (279)
219 cd07947 DRE_TIM_Re_CS Clostrid 23.7 3.4E+02 0.0075 28.2 8.1 85 116-206 77-177 (279)
220 cd07025 Peptidase_S66 LD-Carbo 23.0 2.6E+02 0.0057 28.8 7.0 91 101-198 2-95 (282)
221 PRK14040 oxaloacetate decarbox 23.0 2.3E+02 0.005 32.8 7.2 51 112-172 96-146 (593)
222 cd07062 Peptidase_S66_mccF_lik 22.8 2.9E+02 0.0062 28.9 7.3 80 112-198 17-99 (308)
223 cd00717 URO-D Uroporphyrinogen 22.8 1.5E+02 0.0031 30.9 5.2 76 118-202 182-260 (335)
224 PRK13397 3-deoxy-7-phosphohept 22.6 2.7E+02 0.006 28.9 7.0 66 106-173 22-87 (250)
225 TIGR00539 hemN_rel putative ox 22.3 1.8E+02 0.0038 30.8 5.8 52 116-172 100-159 (360)
226 PF01136 Peptidase_U32: Peptid 22.3 81 0.0017 30.8 3.1 38 113-168 2-41 (233)
227 cd00598 GH18_chitinase-like Th 22.1 3.2E+02 0.007 25.6 7.0 69 90-162 63-136 (210)
228 TIGR02026 BchE magnesium-proto 22.1 2E+02 0.0043 32.0 6.3 47 117-168 288-341 (497)
229 TIGR02529 EutJ ethanolamine ut 22.1 2.4E+02 0.0053 28.2 6.4 64 96-171 24-96 (239)
230 COG1060 ThiH Thiamine biosynth 21.7 1.4E+02 0.003 32.6 4.9 59 114-172 159-221 (370)
231 PF13380 CoA_binding_2: CoA bi 21.7 1.9E+02 0.004 25.9 5.0 44 109-166 62-105 (116)
232 PRK10150 beta-D-glucuronidase; 21.5 1.6E+02 0.0036 33.3 5.7 45 110-168 310-354 (604)
233 PRK00042 tpiA triosephosphate 21.4 1.3E+02 0.0028 30.9 4.4 46 117-172 77-126 (250)
234 PF05913 DUF871: Bacterial pro 21.1 1.7E+02 0.0038 31.6 5.5 48 405-457 18-65 (357)
235 PRK11858 aksA trans-homoaconit 21.0 5.4E+02 0.012 27.8 9.1 102 115-240 77-187 (378)
236 PF06336 Corona_5a: Coronaviru 21.0 80 0.0017 26.3 2.2 23 331-353 2-24 (65)
237 PRK14705 glycogen branching en 21.0 1.6E+02 0.0035 36.9 5.8 53 113-172 765-835 (1224)
238 cd06589 GH31 The enzymes of gl 20.9 2.4E+02 0.0053 28.5 6.2 70 109-190 20-98 (265)
239 TIGR03234 OH-pyruv-isom hydrox 20.8 2.2E+02 0.0047 28.0 5.7 57 113-173 84-144 (254)
240 COG0149 TpiA Triosephosphate i 20.8 1.4E+02 0.0031 31.0 4.6 45 118-172 80-128 (251)
241 PRK09240 thiH thiamine biosynt 20.7 2.2E+02 0.0048 30.5 6.2 46 116-166 163-219 (371)
242 cd07382 MPP_DR1281 Deinococcus 20.7 3.5E+02 0.0076 27.9 7.3 49 111-173 126-174 (255)
243 TIGR02100 glgX_debranch glycog 20.6 1.4E+02 0.003 35.1 4.9 64 113-176 182-272 (688)
244 PLN03231 putative alpha-galact 20.5 97 0.0021 33.7 3.4 47 120-166 29-102 (357)
245 TIGR00289 conserved hypothetic 20.4 1.8E+02 0.0039 29.5 5.1 56 405-461 125-180 (222)
246 cd04871 ACT_PSP_2 ACT domains 20.3 90 0.002 26.5 2.6 34 420-457 49-82 (84)
247 PRK08005 epimerase; Validated 20.2 1.1E+02 0.0024 30.8 3.5 74 111-200 11-88 (210)
No 1
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=1.8e-186 Score=1471.13 Aligned_cols=458 Identities=40% Similarity=0.709 Sum_probs=437.5
Q ss_pred CCCCCCCCCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHH
Q 009121 82 SSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEK 161 (543)
Q Consensus 82 ~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~ 161 (543)
...+++..++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||+
T Consensus 96 ~~~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~ 175 (573)
T PLN00197 96 IGGTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKR 175 (573)
T ss_pred cccccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHH
Confidence 44566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEee-----cCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHH
Q 009121 162 IGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (543)
Q Consensus 162 ~GLKv~~vmsFH-----vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF 236 (543)
+||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||+|+|+|||+||
T Consensus 176 ~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SF 255 (573)
T PLN00197 176 HGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAF 255 (573)
T ss_pred cCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCceeEEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCC
Q 009121 237 KSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYD 316 (543)
Q Consensus 237 ~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Yn 316 (543)
|++|++||+++|+||+|||||||||||||||+..|+|+||||||||||||||+++||++|+++|||+||++||+|+|+||
T Consensus 256 r~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn 335 (573)
T PLN00197 256 RDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYN 335 (573)
T ss_pred HHHHHHHhcCceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhhcccccC
Q 009121 317 ESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYN 396 (543)
Q Consensus 317 ~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYN 396 (543)
+.|++|+||++++|+|+|+||||||+|||++|++||||||++|+.+|++++|+|++|||||||||+|+||||||||||||
T Consensus 336 ~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYN 415 (573)
T PLN00197 336 NWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYN 415 (573)
T ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhcccccc
Confidence 99999999997778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHHHHhc
Q 009121 397 TAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNL 476 (543)
Q Consensus 397 t~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~ 476 (543)
|++||||+||++|||||+|+|+||||||+|.+||++++|+||+||+||+++|+++||+|+|||||++||.++|+||+++.
T Consensus 416 t~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~ 495 (573)
T PLN00197 416 TRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQAS 495 (573)
T ss_pred CCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cC-------CCCcceeEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcccc-hhccccccCCccee
Q 009121 477 FG-------ENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEV-TESVHTNANTNIQV 540 (543)
Q Consensus 477 ~~-------~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 540 (543)
.. ..++++||||||++.||+++||++|++|||+||++... +++|+++++ .+.+.......+|.
T Consensus 496 ~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e 566 (573)
T PLN00197 496 SLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDS-HRCREQVEREAEHFVHVTRPLVQE 566 (573)
T ss_pred ccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCC-CccchhcchhcccceecchhhHHH
Confidence 42 13589999999999999999999999999999998775 899988655 44444444444443
No 2
>PLN02803 beta-amylase
Probab=100.00 E-value=1.8e-184 Score=1452.51 Aligned_cols=459 Identities=39% Similarity=0.719 Sum_probs=435.7
Q ss_pred CCCCCCCCCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHH
Q 009121 82 SSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEK 161 (543)
Q Consensus 82 ~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~ 161 (543)
..++++..++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||+
T Consensus 76 ~~~~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 155 (548)
T PLN02803 76 SGPHSKNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQK 155 (548)
T ss_pred cCcccccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHH
Confidence 34466788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEee-----cCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHH
Q 009121 162 IGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (543)
Q Consensus 162 ~GLKv~~vmsFH-----vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF 236 (543)
+||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||+|+|+|||+||
T Consensus 156 ~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SF 235 (548)
T PLN02803 156 HGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSF 235 (548)
T ss_pred cCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCceeEEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCC
Q 009121 237 KSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYD 316 (543)
Q Consensus 237 ~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Yn 316 (543)
|++|++||++||+||+|||||||||||||||+..|+|+||||||||||||||+++||++|+++|||+||++||||+|+||
T Consensus 236 r~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn 315 (548)
T PLN02803 236 RERFKDYLGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYK 315 (548)
T ss_pred HHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCC
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhhcccccC
Q 009121 317 ESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYN 396 (543)
Q Consensus 317 ~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYN 396 (543)
++|++|+||+++ |+|+|+||||||+|||++|++||||||+.|+.+|++++|+|++|||||||||+|+||||||||||||
T Consensus 316 ~~P~~t~FF~~~-G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYN 394 (548)
T PLN02803 316 QFPEETGFFRRD-GTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYN 394 (548)
T ss_pred CCCCCCCCCCCC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhcccccc
Confidence 999999999987 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHHHHhc
Q 009121 397 TAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNL 476 (543)
Q Consensus 397 t~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~ 476 (543)
|++||||+||++|||||+|+|+||||||+|.+||++++|+||+||+||+++|+++||+|+|||||++||.++|+||+++.
T Consensus 395 t~~rdGY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~ 474 (548)
T PLN02803 395 TRNHDGYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATS 474 (548)
T ss_pred CCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCC--CcceeEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcccc-hh----ccccccCCcceeec
Q 009121 477 FGEN--VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEV-TE----SVHTNANTNIQVQA 542 (543)
Q Consensus 477 ~~~~--~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~ 542 (543)
+.+. ++++||||||++.||+++||++|++|||+||++... +++|..++. .+ .+..+....+++++
T Consensus 475 ~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 546 (548)
T PLN02803 475 RSDSGNGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRN-RRLPECDTEGSDLYVGFIKDKDAEKTTEAA 546 (548)
T ss_pred cccccCceeeeEEecCChHHcChhhHHHHHHHHHHhcCcccc-CccchhhccCccchhhhhcccchhhhhhhh
Confidence 6433 699999999999999999999999999999998775 666554333 22 22244445555554
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=3.8e-181 Score=1421.84 Aligned_cols=448 Identities=34% Similarity=0.661 Sum_probs=426.4
Q ss_pred CCCCCCCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcC
Q 009121 84 ARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIG 163 (543)
Q Consensus 84 ~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 163 (543)
...+..++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++|
T Consensus 8 ~~~~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~G 87 (517)
T PLN02801 8 EEKMLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFG 87 (517)
T ss_pred cccccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEee-----cCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHH
Q 009121 164 LKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKS 238 (543)
Q Consensus 164 LKv~~vmsFH-----vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~ 238 (543)
|||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||+|+|+|||+|||+
T Consensus 88 LKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~ 167 (517)
T PLN02801 88 LKIQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRE 167 (517)
T ss_pred CeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccC-ceeEEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCC
Q 009121 239 SFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDE 317 (543)
Q Consensus 239 ~f~~~l~~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Yn~ 317 (543)
+|++||++ +|+||+|||||||||||||||++.| |+||||||||||||||+++||++|+++||++||+ |+|+|+||+
T Consensus 168 ~F~~~l~~~~I~eI~VGlGP~GELRYPSYp~~~g-W~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~--P~dag~Yn~ 244 (517)
T PLN02801 168 NMADFLEAGVIIDIEVGLGPAGELRYPSYPETQG-WVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL--PDDAGEYND 244 (517)
T ss_pred HHHHhccCCeeEEEEEcccccccccCCCCcCCCC-CCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC--CCCCCcccC
Confidence 99999985 9999999999999999999999998 9999999999999999999999999999999995 999999999
Q ss_pred CCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhhcccccCC
Q 009121 318 SPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNT 397 (543)
Q Consensus 318 ~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt 397 (543)
+|++|+||+++ |+|+|+||||||+|||++|++||||||++|+.+|++++|+|++|||||||||+|+||||||||||||+
T Consensus 245 ~P~~t~FF~~~-G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~ 323 (517)
T PLN02801 245 TPEDTGFFKSN-GTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNL 323 (517)
T ss_pred CCCCCCCCCCC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccC
Confidence 99999999976 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHHHHhcc
Q 009121 398 AKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLF 477 (543)
Q Consensus 398 ~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~ 477 (543)
++||||.|||+|||||+|+|+||||||+|.+||++++|+||+||+||+++|+++||+|+|||||++||+++|+||++++.
T Consensus 324 ~~rDGY~pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~ 403 (517)
T PLN02801 324 KGRDGYRPIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNAR 403 (517)
T ss_pred CCccchHHHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCC---------CcceeEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcccchhccccccC
Q 009121 478 GEN---------VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNAN 535 (543)
Q Consensus 478 ~~~---------~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (543)
.++ ++++||||||++.||+++||++|++|||+||++...-.|-.+..+...++.+|..
T Consensus 404 ~~~~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~p~~~~~~ 470 (517)
T PLN02801 404 PNGVNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQDYCPDPAKYGHEIVPLERSNP 470 (517)
T ss_pred hccCCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccccCCChhhcCCCCCccccCCC
Confidence 432 4899999999999999999999999999999875543333333444555555543
No 4
>PLN02161 beta-amylase
Probab=100.00 E-value=9.1e-181 Score=1418.43 Aligned_cols=431 Identities=39% Similarity=0.733 Sum_probs=419.3
Q ss_pred CCCCCCCCCceEEEeeeceeeeCC----CccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHH
Q 009121 83 SARPKSLDAVRLFVGLPLDTVSDA----NTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEM 158 (543)
Q Consensus 83 ~~~~~~~~~vpv~VMlPLd~V~~~----~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~m 158 (543)
..+....++||||||||||+|+.+ ++++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|
T Consensus 83 ~~~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~m 162 (531)
T PLN02161 83 VLVSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRL 162 (531)
T ss_pred ccccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHH
Confidence 556678889999999999999965 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEEee-----cCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHH
Q 009121 159 VEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFC 233 (543)
Q Consensus 159 v~~~GLKv~~vmsFH-----vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm 233 (543)
||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++||++||||+|+|+|||
T Consensus 163 vr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 163 ISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred HHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHH
Confidence 999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCceeEEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCCCCC
Q 009121 234 ESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAP 313 (543)
Q Consensus 234 ~sF~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag 313 (543)
+|||++|++||+++|+||+|||||||||||||||+.+|+|+||||||||||||||+++||++|+++|||+||++||+|||
T Consensus 243 ~SFr~~F~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg 322 (531)
T PLN02161 243 LSFSTKFEPYIGNVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTG 322 (531)
T ss_pred HHHHHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCc
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCC------CCceEEEEecceeecCCCCCCh
Q 009121 314 SYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGE------TGVSIYGKIPLIHSWYKTRSHP 387 (543)
Q Consensus 314 ~Yn~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~------~~v~l~aKV~GIHWwy~t~SHa 387 (543)
.||+.|++|+||++++|+|+|+||||||+|||++|++||||||++|+.+|++ ++|+|++|||||||||+|+|||
T Consensus 323 ~Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHa 402 (531)
T PLN02161 323 CYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHP 402 (531)
T ss_pred ccCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCch
Confidence 9999999999999877899999999999999999999999999999999975 6899999999999999999999
Q ss_pred hhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcc
Q 009121 388 SELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPG 467 (543)
Q Consensus 388 AElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~ 467 (543)
|||||||||+++||||.|||+|||||+|+|+||||||+|.|||+++.|+||+||+||+++|+++||+|+|||||++||..
T Consensus 403 AElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~ 482 (531)
T PLN02161 403 AELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEM 482 (531)
T ss_pred hhhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcCCceeecccccccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCC--CcceeEEeecCcccCCCCChhhHHHHHHHhccC
Q 009121 468 GFEQMKKNLFGEN--VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQL 513 (543)
Q Consensus 468 ~~~qi~~~~~~~~--~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~ 513 (543)
+|+||++++...+ ++.+||||||++.||+++||++|++|||+||++
T Consensus 483 ~~~qi~~n~~~~~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 483 GLRQIRENCVQPNGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred HHHHHHHHhcCCCCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCC
Confidence 9999999975433 599999999999999999999999999999985
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=1.7e-178 Score=1420.97 Aligned_cols=428 Identities=36% Similarity=0.686 Sum_probs=415.6
Q ss_pred CCCCCCCCCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHH
Q 009121 82 SSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEK 161 (543)
Q Consensus 82 ~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~ 161 (543)
........++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||+
T Consensus 255 ~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~ 334 (702)
T PLN02905 255 TERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRE 334 (702)
T ss_pred ccccccCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHH
Confidence 44555667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEee-----cCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHH
Q 009121 162 IGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (543)
Q Consensus 162 ~GLKv~~vmsFH-----vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF 236 (543)
+||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+||
T Consensus 335 ~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SF 414 (702)
T PLN02905 335 LKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSF 414 (702)
T ss_pred cCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccC-ceeEEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCC
Q 009121 237 KSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSY 315 (543)
Q Consensus 237 ~~~f~~~l~~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Y 315 (543)
|++|++||++ +|+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++|||+||+ ||||+|+|
T Consensus 415 r~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~G-W~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~-gP~dAG~Y 492 (702)
T PLN02905 415 RVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHG-WRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWAR-GPDNTGSY 492 (702)
T ss_pred HHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCC-CCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCCCcc
Confidence 9999999987 9999999999999999999999998 9999999999999999999999999999999998 89999999
Q ss_pred CCCCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhhccccc
Q 009121 316 DESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLY 395 (543)
Q Consensus 316 n~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyY 395 (543)
|++|++|+||+++ |+|+|+||||||+|||++|++||||||++|+.+|++ ++|++|||||||||+|+|||||||||||
T Consensus 493 N~~P~~TgFF~~~-Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGIHWWY~t~SHAAELTAGYY 569 (702)
T PLN02905 493 NSQPHETGFFCDG-GDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGVHWWYKTASHAAELTAGFY 569 (702)
T ss_pred CCCCCCCCCCCCC-CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchHhhccccc
Confidence 9999999999986 899999999999999999999999999999999987 7999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCC---CCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHH
Q 009121 396 NTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPR---ESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQM 472 (543)
Q Consensus 396 Nt~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~p~---~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi 472 (543)
||++||||.|||+|||||+|+|+||||||+|.+||+ +++|+||+||+||+++||++||+|+|||||++||.++|+||
T Consensus 570 Nt~~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI 649 (702)
T PLN02905 570 NPCNRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKI 649 (702)
T ss_pred cCCCcccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHH
Confidence 999999999999999999999999999999999986 88999999999999999999999999999999999999999
Q ss_pred HHhccCCC-----CcceeEEeecCcccCCCCChhhHHHHHHHhccCC
Q 009121 473 KKNLFGEN-----VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLE 514 (543)
Q Consensus 473 ~~~~~~~~-----~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~ 514 (543)
++++..++ ++++||||||++.||+++||++|++|||+||++.
T Consensus 650 ~~na~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~ 696 (702)
T PLN02905 650 LENAKPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEA 696 (702)
T ss_pred HHHhhcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhcccc
Confidence 99976542 4899999999999999999999999999999863
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=1.2e-177 Score=1411.41 Aligned_cols=434 Identities=33% Similarity=0.599 Sum_probs=418.9
Q ss_pred CCCCCCCCCCCCCCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHH
Q 009121 77 DSGPLSSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVA 156 (543)
Q Consensus 77 ~~~~~~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~ 156 (543)
.+.+...++....++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||
T Consensus 232 ~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~ 311 (681)
T PLN02705 232 VHSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELF 311 (681)
T ss_pred cCCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHH
Confidence 33444556667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEEEee-----cCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHH
Q 009121 157 EMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQE 231 (543)
Q Consensus 157 ~mv~~~GLKv~~vmsFH-----vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~d 231 (543)
+|||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|
T Consensus 312 ~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~D 391 (681)
T PLN02705 312 NIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFD 391 (681)
T ss_pred HHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccC-ceeEEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCC
Q 009121 232 FCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPH 310 (543)
Q Consensus 232 fm~sF~~~f~~~l~~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~ 310 (543)
||+|||++|++||++ +|+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ ||+
T Consensus 392 FM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~g-W~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~-gP~ 469 (681)
T PLN02705 392 FMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMG-WIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWAR-GPD 469 (681)
T ss_pred HHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCC-CCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCC
Confidence 999999999999977 9999999999999999999999988 9999999999999999999999999999999998 799
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhh
Q 009121 311 DAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSEL 390 (543)
Q Consensus 311 ~ag~Yn~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAEl 390 (543)
|++.||++|++|+||+++ |+|+|+||||||+|||++|++||||||++|+.+|++ ++|++|||||||||+|+||||||
T Consensus 470 dAg~YN~~P~~tgFF~~~-G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGIHWWY~t~SHAAEL 546 (681)
T PLN02705 470 NAGQYNSRPHETGFFCER-GDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAVYWWYKTASHAAEL 546 (681)
T ss_pred CccccCCCCCCCCCCCCC-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchhhh
Confidence 999999999999999987 789999999999999999999999999999999986 89999999999999999999999
Q ss_pred cccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCC-CCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchH
Q 009121 391 TAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQ-PRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGF 469 (543)
Q Consensus 391 TAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~-p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~ 469 (543)
|||||||++||||+||++|||||+|+|+|||+||+|.++ |.+++|+||+||+||+++|+++||+|+|||||++||.++|
T Consensus 547 TAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay 626 (681)
T PLN02705 547 TAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGC 626 (681)
T ss_pred ccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCCCCCccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHH
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred HHHHHhccCCC-----CcceeEEeecCcccCCCCChhhHHHHHHHhccCCC
Q 009121 470 EQMKKNLFGEN-----VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLEL 515 (543)
Q Consensus 470 ~qi~~~~~~~~-----~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~ 515 (543)
+||+++++.++ .|++||||||++.||+++||++|++|||+||++..
T Consensus 627 ~qI~~na~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~ 677 (681)
T PLN02705 627 MRLIEIAKPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDIR 677 (681)
T ss_pred HHHHHHhcccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhccccc
Confidence 99999976543 58999999999999999999999999999998653
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=4.6e-159 Score=1233.83 Aligned_cols=388 Identities=50% Similarity=0.915 Sum_probs=332.6
Q ss_pred EEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee-
Q 009121 95 FVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH- 173 (543)
Q Consensus 95 ~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH- 173 (543)
|||||||+|+++++++ +|+++|++||++||||||||||||+||+++|++|||++|++|++|||++|||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988875 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----cCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCcee
Q 009121 174 ----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (543)
Q Consensus 174 ----vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~ 249 (543)
|||+|+||||+||++++++| ||+||||+|+||+|||| |+++||| +|+|+|||+|||++|++|+ ++|+
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~ 148 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL-STIT 148 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH-TGEE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH-hhhe
Confidence 89999999999999999999 99999999999999999 9999999 9999999999999999999 9999
Q ss_pred EEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHH------HcCCCCcCCCCCCCCCCCCCCCCCCC
Q 009121 250 GISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE------ANGNPLWGLRGPHDAPSYDESPNSNS 323 (543)
Q Consensus 250 eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~------~~gn~~WG~~gP~~ag~Yn~~P~~t~ 323 (543)
||+|||||||||||||||+.+| |+||||||||||||||+++||++|+ .++|++||++||+++ ||++|++|+
T Consensus 149 ~I~vglGP~GELRYPSy~~~~g-w~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 149 EIQVGLGPAGELRYPSYPESDG-WRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEE--SGGGBSS-S-S-GGGT-B-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred EEEeccCCcceeccCCCCCCCC-CcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 9999999999999999999999 9999999999999999999999999 588999999999999 999999999
Q ss_pred cccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CceEEEEecceeecCC--CCCChhhhcccccCCCCC
Q 009121 324 FFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWYK--TRSHPSELTAGLYNTAKR 400 (543)
Q Consensus 324 FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~-~v~l~aKV~GIHWwy~--t~SHaAElTAGyYNt~~r 400 (543)
||+++ |+|+|+||||||+|||++|++||||||++|+.+|+++ +|+|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~-G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN---- 300 (402)
T PF01373_consen 226 FFRDN-GSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN---- 300 (402)
T ss_dssp TTSTT-CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S-----
T ss_pred CcccC-CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC----
Confidence 99987 7999999999999999999999999999999999999 9999999999999999 88999999999999
Q ss_pred CchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHHHHhccCCC
Q 009121 401 DGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGEN 480 (543)
Q Consensus 401 dGY~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~~ 480 (543)
|+||++|||||+|+|+||||||+|.+++|+ .|+||+||+||+++|+++||+|+|||||++||+++|+||+++++. .
T Consensus 301 --Y~~Ia~mf~kh~~~l~fTClEM~d~~~~p~-~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~-~ 376 (402)
T PF01373_consen 301 --YSPIARMFKKHGVTLNFTCLEMRDSEEQPE-YSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKG-Y 376 (402)
T ss_dssp --SHHHHHHHHTTT-EEEES-TT--GGSGSCG-GG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTH-T
T ss_pred --HHHHHHHHHHcCcEEEEEeccccCCCCCCC-CCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhc-c
Confidence 999999999999999999999999954333 579999999999999999999999999999999999999999753 4
Q ss_pred CcceeEEeecCcccCCCCChhhHHHH
Q 009121 481 VVDLFTYQRMGAYFFSPEHFPSFTKF 506 (543)
Q Consensus 481 ~~~~FTylRm~~~lf~~~n~~~F~~F 506 (543)
++.+||||||++.||+++||++|++|
T Consensus 377 ~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 377 NYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp TTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred CCCCeEEEccChHhcCcccHHhccCC
Confidence 56789999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=2.7e-22 Score=206.78 Aligned_cols=212 Identities=18% Similarity=0.278 Sum_probs=148.7
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhh
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQI 189 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~ 189 (543)
+++.|+++|+.||++|++.|++.++ |..+|| .||+|||+.+++++++++++|||| ||++ .+...|.|+.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~v--iL~~-----~~~~~P~Wl~-- 77 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKV--ILGT-----PTAAPPAWLY-- 77 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EE--EEEE-----CTTTS-HHHH--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeE--EEEe-----cccccccchh--
Confidence 3478999999999999999998654 999998 999999999999999999999998 8999 7888999998
Q ss_pred hccCCCeeeecCCCCccccccccccCCcccCCCCC----hhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCCCCC
Q 009121 190 GESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKT----PIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPS 265 (543)
Q Consensus 190 g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRT----piq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELRYPS 265 (543)
+++||++.+|++|.+. ..++|. ..+.|+++++.|.++++. ||..
T Consensus 78 -~~~Pe~~~~~~~g~~~------------~~g~~~~~~~~~p~yr~~~~~~~~~l~~-------------------~y~~ 125 (374)
T PF02449_consen 78 -DKYPEILPVDADGRRR------------GFGSRQHYCPNSPAYREYARRFIRALAE-------------------RYGD 125 (374)
T ss_dssp -CCSGCCC-B-TTTSBE------------ECCCSTT-HCCHHHHHHHHHHHHHHHHH-------------------HHTT
T ss_pred -hhcccccccCCCCCcC------------ccCCccccchhHHHHHHHHHHHHHHHHh-------------------hccc
Confidence 8899999999999885 233332 467899999999999998 7888
Q ss_pred CCCCCCCCcC---CCCcccccccHHHHHHHHHHHHH------cCCCCcCCCCCCCCCCCCC-----CCCCCCcccCCCCC
Q 009121 266 HHRLAKSSKI---PGVGEFQCCDRNMLNLLQQHAEA------NGNPLWGLRGPHDAPSYDE-----SPNSNSFFKDNGGS 331 (543)
Q Consensus 266 yp~~~g~W~~---PGiGEFQCYDky~~~~lr~~a~~------~gn~~WG~~gP~~ag~Yn~-----~P~~t~FF~~~gg~ 331 (543)
+|...| |+. ||.+ .||++.+++.|++|+++ ++|.+||+. +|+.+|++ +|..+....++ .
T Consensus 126 ~p~vi~-~~i~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~--~ws~~~~~f~~v~~P~~~~~~~~~--~ 198 (374)
T PF02449_consen 126 HPAVIG-WQIDNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTA--FWSQRYSSFDEVPPPRPTSSPENP--A 198 (374)
T ss_dssp TTTEEE-EEECCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTT--GGG---SSGGG---S-S-SS---H--H
T ss_pred cceEEE-EEeccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCC--cccCccCcHHhcCCCCCCCCCCCh--H
Confidence 887777 766 5554 89999999999999997 889999998 88888883 56655533343 4
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecce
Q 009121 332 WESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI 377 (543)
Q Consensus 332 ~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~GI 377 (543)
...+|-+|..+=....+.. +.+..+++- ++..|..+.-+.
T Consensus 199 ~~~D~~rF~~~~~~~~~~~----~~~~ir~~~--p~~~vt~n~~~~ 238 (374)
T PF02449_consen 199 QWLDWYRFQSDRVAEFFRW----QADIIREYD--PDHPVTTNFMGS 238 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHS--TT-EEE-EE-TT
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhC--CCceEEeCcccc
Confidence 5566666665544444444 444444443 346777777666
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=4e-14 Score=157.51 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=160.9
Q ss_pred cHHHHHHHHHHHHHcCcceEEe-eeeeeccccCCCceeechhHHHH-HHHHHHcCCcEEEEEEeecCCCCCCCCChhchh
Q 009121 111 HAKAIAAGLKALKLLGVEGVEL-PVWWGVAEKEAMGKYNWSGYLAV-AEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l-~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~ 188 (543)
+++.|+.+|++||++|++.|++ .+-|+.+|| ..|+|||++.+.. ++++++.||++ ||++ .++-..|.|+.
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~v--il~t----~P~g~~P~Wl~- 99 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYV--ILRT----GPTGAPPAWLA- 99 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceE--EEec----CCCCCCchHHh-
Confidence 5589999999999999999999 555999998 8899999999999 99999999999 9998 25677899999
Q ss_pred hhccCCCeeeecCCCCccccccccccCCcccCCCCC----hhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCC-C
Q 009121 189 IGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKT----PIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELR-Y 263 (543)
Q Consensus 189 ~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRT----piq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELR-Y 263 (543)
+++|+|+.+|+.|.+. .+++|. ....|+++.+...+..++ | |
T Consensus 100 --~~~PeiL~~~~~~~~~------------~~g~r~~~~~~~~~Yr~~~~~i~~~ire-------------------r~~ 146 (673)
T COG1874 100 --KKYPEILAVDENGRVR------------SDGARENICPVSPVYREYLDRILQQIRE-------------------RLY 146 (673)
T ss_pred --cCChhheEecCCCccc------------CCCcccccccccHHHHHHHHHHHHHHHH-------------------HHh
Confidence 9999999999999986 778884 223699999888888888 5 7
Q ss_pred CCCCCCCCCCcC----CCCcccccccHHHHHHHHHHHHH------cCCCCcCCCCCCCCCCCCC-----CCCCCCcccCC
Q 009121 264 PSHHRLAKSSKI----PGVGEFQCCDRNMLNLLQQHAEA------NGNPLWGLRGPHDAPSYDE-----SPNSNSFFKDN 328 (543)
Q Consensus 264 PSyp~~~g~W~~----PGiGEFQCYDky~~~~lr~~a~~------~gn~~WG~~gP~~ag~Yn~-----~P~~t~FF~~~ 328 (543)
..+|...+ |+. .|. -||++++++.|+.|+++ .+|.+|++. +|+++|.. +|. .|=.++
T Consensus 147 ~~~~~v~~-w~~dneY~~~---~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~--~ws~t~~~~~~i~~p~--~~~e~~ 218 (673)
T COG1874 147 GNGPAVIT-WQNDNEYGGH---PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTS--FWSHTYKDFDEIMSPN--PFGELP 218 (673)
T ss_pred ccCCceeE-EEccCccCCc---cccccccHHHHHHHHHhCcchHHhhhhhhhhh--hcccccccHHhhcCCC--CccccC
Confidence 77776655 654 555 59999999999999997 679999997 99999983 343 121122
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 009121 329 GGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFG 364 (543)
Q Consensus 329 gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~ 364 (543)
--+-.++|-+|..+= .++-.+.....++..|.
T Consensus 219 ~~~~~ld~~~f~~e~----~~~~~~~~~~~~~~~~P 250 (673)
T COG1874 219 LPGLYLDYRRFESEQ----ILEFVREEGEAIKAYFP 250 (673)
T ss_pred CccchhhHhhhhhhh----hHHHHHHHHHHHHHhCC
Confidence 112337888888664 55566666777777773
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.76 E-value=2.1e-08 Score=103.37 Aligned_cols=116 Identities=17% Similarity=0.277 Sum_probs=73.8
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechh---HHHHHHHHHHcCCcEEEEEEee---cCCCCCCCCCh
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSG---YLAVAEMVEKIGLKLHVSLCFH---ALKQPKIPLPD 184 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~---Y~~l~~mv~~~GLKv~~vmsFH---vgD~~~IpLP~ 184 (543)
+++.|+..|++||++|++.|.+.|.|...|+ .||+|||++ .++++++|+++||+| |+.+= -+...+=-||.
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~aE~~~gG~P~ 98 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICAEWDNGGLPA 98 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---TTBGGGG--G
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceecccccchhhhh
Confidence 4789999999999999999999999999997 899999997 679999999999997 88874 11111123999
Q ss_pred hchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC---ceeEEEe
Q 009121 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT---TITGISM 253 (543)
Q Consensus 185 WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~---~I~eI~V 253 (543)
||.. +|++.+.+. +++ =++.-+.|++.+...+++++-+ .|.-|||
T Consensus 99 Wl~~----~~~~~~R~~----~~~----------------~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 99 WLLR----KPDIRLRTN----DPP----------------FLEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp GGGG----STTS-SSSS-----HH----------------HHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhc----ccccccccc----chh----------------HHHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 9973 333322211 111 1344555666666666665432 7777877
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.23 E-value=1.1e-05 Score=92.71 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=99.8
Q ss_pred CcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHH---HHHHHHHHcCCcEEEEEEeecCCCCC-----CC
Q 009121 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYL---AVAEMVEKIGLKLHVSLCFHALKQPK-----IP 181 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~---~l~~mv~~~GLKv~~vmsFHvgD~~~-----Ip 181 (543)
..++.|+.-|++||++|++.|.+-|.|..-|+ .||+|||++-. +.+++|++.||.| |+-- |.-+. =-
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyv--ilRp--GPYIcAEw~~GG 130 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYV--HLRI--GPYICAEWNFGG 130 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEE--EecC--CcceeeeecCCC
Confidence 36889999999999999999999999999998 89999999855 5578999999999 5543 11111 12
Q ss_pred CChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhccccc---------CceeEEE
Q 009121 182 LPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMG---------TTITGIS 252 (543)
Q Consensus 182 LP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~---------~~I~eI~ 252 (543)
||.||. ++|+|.+ ||.-+.|.+.|+.|-+++.+.|+ --|.-+|
T Consensus 131 lP~WL~----~~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 131 FPVWLK----YVPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred Cchhhh----cCCCccc------------------------ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 899997 3455433 33346788878777777776653 2566676
Q ss_pred eeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcC
Q 009121 253 MGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANG 300 (543)
Q Consensus 253 VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~g 300 (543)
| |=-|.||....| .| |+.-++.|++.|++.|
T Consensus 183 I------ENEYGs~~~~~~----------~~-d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 183 I------ENEYGPVEWEIG----------AP-GKAYTKWAADMAVKLG 213 (840)
T ss_pred e------cccccceecccC----------cc-hHHHHHHHHHHHHHcC
Confidence 6 555877743322 12 4444567777777744
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=98.03 E-value=1.6e-05 Score=85.34 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=91.4
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
....-..++.||+.||++|++.+++.+=|..+||.+++++| +..|+++++.++++||++.|.|. | ..+|.
T Consensus 49 a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H------fd~P~ 121 (427)
T TIGR03356 49 ACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H------WDLPQ 121 (427)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c------CCccH
Confidence 44567889999999999999999999999999998788888 79999999999999999966664 3 55899
Q ss_pred hchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 185 WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
|+.+ +.|-.+ |.-++.|.+|.+...++|.+..+- ||.|..+
T Consensus 122 ~l~~------------~gGw~~----------------~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 122 ALED------------RGGWLN----------------RDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred HHHh------------cCCCCC----------------hHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 9862 334444 334689999999999999986554 7778765
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.59 E-value=0.00013 Score=78.60 Aligned_cols=111 Identities=18% Similarity=0.306 Sum_probs=85.3
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCC-Cceee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA-MGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP 183 (543)
.-.....++.|++.||++|++..++.+=|..++|.+ .|++| +..|+++++.++++|++..|.|.- ..||
T Consensus 53 a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H-------~~~P 125 (455)
T PF00232_consen 53 ACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH-------FDLP 125 (455)
T ss_dssp TTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES-------S--B
T ss_pred cccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeee-------cccc
Confidence 345678899999999999999999999999999977 78888 999999999999999999665542 5699
Q ss_pred hhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 184 ~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
.||.+. .|-.| |.-++.|.+|.+-..++|.+..+- ||.|..+
T Consensus 126 ~~l~~~------------ggw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 126 LWLEDY------------GGWLN----------------RETVDWFARYAEFVFERFGDRVKYWITFNEPNV 169 (455)
T ss_dssp HHHHHH------------TGGGS----------------THHHHHHHHHHHHHHHHHTTTBSEEEEEETHHH
T ss_pred cceeec------------ccccC----------------HHHHHHHHHHHHHHHHHhCCCcceEEeccccce
Confidence 999742 23333 445789999999999999998665 7777654
No 14
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.58 E-value=0.00029 Score=68.29 Aligned_cols=103 Identities=19% Similarity=0.364 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccc-cCCCc---eeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchh
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAE-KEAMG---KYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE-~~~p~---~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~ 188 (543)
...+++++.||++|++.|++.+.|...+ +..+. .--|..++++++.|+++||+| |+.+|.. |.|..
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~~-------~~w~~- 90 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHNA-------PGWAN- 90 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEES-------TTCSS-
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEeccC-------ccccc-
Confidence 3789999999999999999999995444 43333 345788999999999999999 8899843 78821
Q ss_pred hhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCceeEEEe
Q 009121 189 IGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISM 253 (543)
Q Consensus 189 ~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~V 253 (543)
. .+..+... +..+.|.++.+.++.+|.+ .+.|.-++|
T Consensus 91 --~-------~~~~~~~~-----------------~~~~~~~~~~~~la~~y~~--~~~v~~~el 127 (281)
T PF00150_consen 91 --G-------GDGYGNND-----------------TAQAWFKSFWRALAKRYKD--NPPVVGWEL 127 (281)
T ss_dssp --S-------TSTTTTHH-----------------HHHHHHHHHHHHHHHHHTT--TTTTEEEES
T ss_pred --c-------ccccccch-----------------hhHHHHHhhhhhhccccCC--CCcEEEEEe
Confidence 0 01111111 2456778888888888865 234444443
No 15
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.35 E-value=0.0006 Score=74.53 Aligned_cols=111 Identities=13% Similarity=0.268 Sum_probs=92.4
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCC----CceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA----MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP 183 (543)
.......++.|++.||++|++..++.+=|..++|.+ +++-.++.|+++++.++++|++..|.|.- -.||
T Consensus 66 A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H-------~~~P 138 (474)
T PRK09852 66 AIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH-------FDVP 138 (474)
T ss_pred cCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-------CCCC
Confidence 445677899999999999999999999999999964 47888999999999999999999777764 5699
Q ss_pred hhchhhhccCCCeeeecC-CCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 184 DWVSQIGESQSSIFYTDQ-SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 184 ~WV~~~g~~~PDI~ytDr-~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
.|+.+ + .|-.| |..++.|.+|.+-..++|.+..+- ||.|..+
T Consensus 139 ~~l~~------------~~GGW~~----------------~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 139 MHLVT------------EYGSWRN----------------RKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred HHHHH------------hcCCCCC----------------HHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 99852 2 22222 445789999999999999998877 8888764
No 16
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.23 E-value=0.00094 Score=73.04 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=90.9
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCC----CceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA----MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP 183 (543)
....-..++.|++.||++|++..++.+=|..++|.+ +++-.+..|+++++.++++|++..|-|. .-.||
T Consensus 64 A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-------H~dlP 136 (477)
T PRK15014 64 AVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-------HFEMP 136 (477)
T ss_pred ccCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-------CCCCC
Confidence 334567899999999999999999999999999965 4677799999999999999999855543 26699
Q ss_pred hhchhhhccCCCeeeecC-CCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEee
Q 009121 184 DWVSQIGESQSSIFYTDQ-SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISMG 254 (543)
Q Consensus 184 ~WV~~~g~~~PDI~ytDr-~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~VG 254 (543)
.||.+ + .|-.| |..++.|.+|.+-..++|.+..+- ||.|+.+-
T Consensus 137 ~~L~~------------~yGGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 137 LHLVQ------------QYGSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred HHHHH------------hcCCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 99962 2 23323 345789999999999999998776 99998754
No 17
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=97.22 E-value=0.00076 Score=73.42 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=91.4
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee---echhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
....-..++.|++.||++|++.-+..+=|..|+|.+++.. -+..|++|++.++++|++-.|.|- ...||.
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-------H~dlP~ 121 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-------HFDTPE 121 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-------CCCCcH
Confidence 4456788999999999999999999999999999876544 578899999999999999855553 367999
Q ss_pred hchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEee
Q 009121 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISMG 254 (543)
Q Consensus 185 WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~VG 254 (543)
||.+ +.|-.| |.-++.|.+|.+-..++|.+ .+. ||.|..+-
T Consensus 122 ~L~~------------~GGW~n----------------~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 122 ALHS------------NGDWLN----------------RENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred HHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 9962 334444 34578999999999999999 887 89998654
No 18
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.0015 Score=73.66 Aligned_cols=138 Identities=19% Similarity=0.350 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHH---HHHHHcCCcEEEEEEee--cCCCCC-CCCCh
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVA---EMVEKIGLKLHVSLCFH--ALKQPK-IPLPD 184 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~---~mv~~~GLKv~~vmsFH--vgD~~~-IpLP~ 184 (543)
.++.|+.-|+++|++|.++|.+-|+|..-|+ .||+||||+=..|+ .+|++.||=| +|--= +-..-+ =-||.
T Consensus 47 ~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~GG~P~ 123 (649)
T KOG0496|consen 47 TPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFGGLPW 123 (649)
T ss_pred ChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCCCcch
Confidence 4788999999999999999999999999997 99999999977665 5677888876 44331 000011 12786
Q ss_pred hchhhhccCCCeeeecCCCCccccccccccCC-cc----cCCCCC-h------hHHHHHHHHHHHHhhcccccC-ceeEE
Q 009121 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDD-LP----VLDGKT-P------IQVYQEFCESFKSSFKPFMGT-TITGI 251 (543)
Q Consensus 185 WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~-~p----vl~GRT-p------iq~Y~dfm~sF~~~f~~~l~~-~I~eI 251 (543)
|+ +..|.|.|...+.....| .-=|.+. +| ++..+- | -..|-.+-+.+++....|++. .+..+
T Consensus 124 wL----~~~pg~~~Rt~nepfk~~-~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~ 198 (649)
T KOG0496|consen 124 WL----RNVPGIVFRTDNEPFKAE-MERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLAT 198 (649)
T ss_pred hh----hhCCceEEecCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEE
Confidence 66 567788776554444222 2212211 11 221111 1 135666777777777777764 56555
Q ss_pred Eeecc
Q 009121 252 SMGLG 256 (543)
Q Consensus 252 ~VGlG 256 (543)
..+.|
T Consensus 199 ~l~~g 203 (649)
T KOG0496|consen 199 SLGTG 203 (649)
T ss_pred ecCCC
Confidence 55555
No 19
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.05 E-value=0.02 Score=57.05 Aligned_cols=193 Identities=17% Similarity=0.270 Sum_probs=107.6
Q ss_pred eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccC
Q 009121 136 WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVD 215 (543)
Q Consensus 136 WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D 215 (543)
|+.+|+ .+|+|||+..+++++.|+++|++++.-..+.. + ..|.|+.+.. . +
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~-~----~~P~W~~~~~--------------~---------~ 53 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWH-S----QTPDWVFNLS--------------K---------E 53 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeec-c----cCCHhhhcCC--------------H---------H
Confidence 899997 99999999999999999999999954222211 1 4689986211 0 0
Q ss_pred CcccCCCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHH
Q 009121 216 DLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQH 295 (543)
Q Consensus 216 ~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~ 295 (543)
.-.+...+|++....+|.+.+. .++|.=-|-..= -+.+.. ..| ++..| .+|+...|+.+
T Consensus 54 --------~~~~~~~~~i~~v~~ry~g~i~----~wdV~NE~~~~~-~~~~~~--~~w-~~~~G-----~~~i~~af~~a 112 (254)
T smart00633 54 --------TLLARLENHIKTVVGRYKGKIY----AWDVVNEALHDN-GSGLRR--SVW-YQILG-----EDYIEKAFRYA 112 (254)
T ss_pred --------HHHHHHHHHHHHHHHHhCCcce----EEEEeeecccCC-Cccccc--chH-HHhcC-----hHHHHHHHHHH
Confidence 1246788888888888776543 333332222210 000111 113 12233 46888888866
Q ss_pred HHHcCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEec
Q 009121 296 AEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIP 375 (543)
Q Consensus 296 a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~ 375 (543)
.+.. |+ ...|-|. |+..-+. .+.++++...+.+... +++|-+ =
T Consensus 113 r~~~-------------------P~-a~l~~Nd---y~~~~~~-----------~k~~~~~~~v~~l~~~-g~~iDg--i 155 (254)
T smart00633 113 READ-------------------PD-AKLFYND---YNTEEPN-----------AKRQAIYELVKKLKAK-GVPIDG--I 155 (254)
T ss_pred HHhC-------------------CC-CEEEEec---cCCcCcc-----------HHHHHHHHHHHHHHHC-CCccce--e
Confidence 5421 11 2333332 2221110 2334555555555432 333222 1
Q ss_pred ceeecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCC
Q 009121 376 LIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDE 427 (543)
Q Consensus 376 GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~ 427 (543)
|++++..... .+-+....+++.|++.|..+.+|=++++..
T Consensus 156 GlQ~H~~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~ 195 (254)
T smart00633 156 GLQSHLSLGS------------PNIAEIRAALDRFASLGLEIQITELDISGY 195 (254)
T ss_pred eeeeeecCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCCC
Confidence 3443332111 112447788888999999999998888754
No 20
>PLN02849 beta-glucosidase
Probab=97.05 E-value=0.0044 Score=68.39 Aligned_cols=111 Identities=16% Similarity=0.284 Sum_probs=91.6
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
...+-..++.|++.||++|++.-+..+=|..++|.+.++.| ...|+++++-++++|++-.|-|. | -.||.
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H------~dlP~ 146 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H------YDHPQ 146 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C------CCCcH
Confidence 44567899999999999999999999999999998766555 66799999999999999855553 3 67999
Q ss_pred hchhhhccCCCeeeecC-CCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 185 WVSQIGESQSSIFYTDQ-SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 185 WV~~~g~~~PDI~ytDr-~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
|+.+ + .|-.| |..++.|.+|.+--.++|.+..+- ||.|..+
T Consensus 147 ~L~~------------~yGGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 147 YLED------------DYGGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred HHHH------------hcCCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 9962 2 33333 456799999999999999998887 8888864
No 21
>PLN02814 beta-glucosidase
Probab=97.01 E-value=0.0023 Score=70.55 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=91.9
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeec---hhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW---SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW---s~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
....-..++.|++.||++|++.-+..+=|..|+|.++++.|- ..|++|++-++++|++-.|-|. .-.||.
T Consensus 72 a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-------H~dlP~ 144 (504)
T PLN02814 72 ASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-------HYDLPQ 144 (504)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-------CCCCCH
Confidence 445678899999999999999999999999999988777775 6799999999999999855553 367999
Q ss_pred hchhhhccCCCeeeecC-CCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 185 WVSQIGESQSSIFYTDQ-SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 185 WV~~~g~~~PDI~ytDr-~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
|+.+ + .|-.| |..++.|.+|.+--.++|.+..+- ||.|..+
T Consensus 145 ~L~~------------~yGGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 145 SLED------------EYGGWIN----------------RKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred HHHH------------hcCCcCC----------------hhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 9962 2 23333 455789999999999999998887 8888764
No 22
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.97 E-value=0.0024 Score=69.63 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=91.3
Q ss_pred CccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC
Q 009121 107 NTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (543)
Q Consensus 107 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP 183 (543)
.....-..++.|++.||++|++.-+..+=|..++|.+++++| ...|+++++-++++|++-.|-|- ...||
T Consensus 47 ~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-------H~dlP 119 (467)
T TIGR01233 47 PASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-------HFDTP 119 (467)
T ss_pred ccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-------CCCCc
Confidence 345667899999999999999999999999999998877663 67899999999999999844443 36699
Q ss_pred hhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 184 ~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
.||.+ +.|-.| |..++.|.+|.+--.++|.+ .+- ||.|..+
T Consensus 120 ~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 120 EALHS------------NGDFLN----------------RENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred HHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 99962 334443 45688999999999999998 776 8888765
No 23
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.97 E-value=0.0026 Score=69.58 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=90.4
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCC-C---ceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA-M---GKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p---~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP 183 (543)
....-..++.|++.||++|++.-+..+=|..|+|.+ + ++=-...|++|++-++++|++-.|-|. | -.||
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H------~dlP 134 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H------FEMP 134 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C------CCCC
Confidence 445678899999999999999999999999999975 2 334478899999999999999855553 3 6799
Q ss_pred hhchhhhccCCCeeeecC-CCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 184 DWVSQIGESQSSIFYTDQ-SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 184 ~WV~~~g~~~PDI~ytDr-~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
.||.+ + .|-.| |.-++.|.+|.+--.++|.+..+- ||.|..+
T Consensus 135 ~~L~~------------~yGGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 135 YHLVT------------EYGGWRN----------------RKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred HHHHH------------hcCCcCC----------------hHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 99952 2 33333 445789999999999999998887 9999765
No 24
>PLN02998 beta-glucosidase
Probab=96.93 E-value=0.0025 Score=70.24 Aligned_cols=111 Identities=16% Similarity=0.313 Sum_probs=91.6
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
....-..++.|++.||++|++.-+..+=|..|+|.+++.+| ...|+++++-++++|++-.|-|. | ..||.
T Consensus 77 a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H------~dlP~ 149 (497)
T PLN02998 77 ACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H------FDLPQ 149 (497)
T ss_pred cccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C------CCCCH
Confidence 44567889999999999999999999999999998777665 67899999999999999855553 3 67999
Q ss_pred hchhhhccCCCeeeecC-CCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEe
Q 009121 185 WVSQIGESQSSIFYTDQ-SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISM 253 (543)
Q Consensus 185 WV~~~g~~~PDI~ytDr-~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~V 253 (543)
|+.+ + .|-.| |..++.|.+|.+--.++|.|..+- ||.|..+
T Consensus 150 ~L~~------------~yGGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 150 ALED------------EYGGWLS----------------QEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred HHHH------------hhCCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 9962 2 23333 456899999999999999998877 8888874
No 25
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.68 E-value=0.0056 Score=67.11 Aligned_cols=112 Identities=13% Similarity=0.259 Sum_probs=90.5
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCC-Cc---eeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA-MG---KYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~---~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP 183 (543)
.......++.|++.||++|++.-+..+=|..|+|.+ ++ +=-...|++|++-++++|++-.|-|- | -.||
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H------~dlP 140 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H------FDCP 140 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c------cCCC
Confidence 445678999999999999999999999999999975 33 34478899999999999999855553 3 6799
Q ss_pred hhchhhhccCCCeeeecC-CCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEee
Q 009121 184 DWVSQIGESQSSIFYTDQ-SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISMG 254 (543)
Q Consensus 184 ~WV~~~g~~~PDI~ytDr-~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~VG 254 (543)
.||.+ + .|-.| |..++.|.+|.+--.++|.+..+- ||.|..+-
T Consensus 141 ~~L~~------------~~GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 141 MHLIE------------EYGGWRN----------------RKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred HHHHh------------hcCCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 99962 2 23333 445789999999999999998887 88897753
No 26
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.50 E-value=0.027 Score=52.08 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=75.1
Q ss_pred HHHHHHHHcCcceEEeeee--ee------ccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchh
Q 009121 117 AGLKALKLLGVEGVELPVW--WG------VAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVW--WG------iVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~ 188 (543)
+-+..||++||+.|++..= +| -+-+..|+- .-+-+.++++.|++.|++|.+-++|+ .-.++.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~--------~d~~~~- 73 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS--------WDEDAA- 73 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee--------cChHHH-
Confidence 4467889999999999442 22 122222333 36788999999999999999999993 334444
Q ss_pred hhccCCCeeeecCCCC--ccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcc
Q 009121 189 IGESQSSIFYTDQSGQ--QFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP 242 (543)
Q Consensus 189 ~g~~~PDI~ytDr~G~--rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~ 242 (543)
+++||=+..|++|+ +..+....+.-.+++ ..-|+||+..-.+++-+
T Consensus 74 --~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~------ns~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 74 --ERHPEWFVRDADGRPMRGERFGYPGWYTCCL------NSPYREFLLEQIREILD 121 (132)
T ss_pred --HhCCceeeECCCCCCcCCCCcCCCCceecCC------CccHHHHHHHHHHHHHH
Confidence 89999999999999 334444433333332 23488998888877766
No 27
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.065 Score=58.98 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=108.7
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCc-eee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCC
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMG-KYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~Ip 181 (543)
......-...+.|++.||++|++..++.+=|..+-|.+.+ ..| -.-|++|++-+.+.|++-.|-|+= ..
T Consensus 52 ~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-------fd 124 (460)
T COG2723 52 EEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-------FD 124 (460)
T ss_pred ccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-------cC
Confidence 3455667789999999999999999999999999996655 555 556999999999999999555543 78
Q ss_pred CChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEeeccCCc
Q 009121 182 LPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISMGLGPDG 259 (543)
Q Consensus 182 LP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~VGlGP~G 259 (543)
+|.||.+.. .|-.| |..++.|..|.+--.++|.|..+- |..|+.|=+.
T Consensus 125 ~P~~L~~~y-----------gGW~n----------------R~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~--- 174 (460)
T COG2723 125 LPLWLQKPY-----------GGWEN----------------RETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE--- 174 (460)
T ss_pred CcHHHhhcc-----------CCccC----------------HHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc---
Confidence 999998332 24333 566899999999999999999886 8888876554
Q ss_pred cCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHH
Q 009121 260 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA 298 (543)
Q Consensus 260 ELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~ 298 (543)
++-..| -..|+...++-.=+-+--.+-++|++
T Consensus 175 ------~~y~~~-~~~p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 175 ------LGYLYG-GHPPGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred ------cccccc-ccCCCccCHHHHHHHHHHHHHHHHHH
Confidence 222222 24466665544434444444455544
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.85 E-value=0.46 Score=49.48 Aligned_cols=227 Identities=17% Similarity=0.140 Sum_probs=134.5
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeee-ec------cccCC------Cce-eechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWW-GV------AEKEA------MGK-YNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWW-Gi------VE~~~------p~~-YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
.+..++++++-|+.||++|++.|-+.||+ |. +++.+ +++ -.|+-+..+++.+++.||+|++=|-+-
T Consensus 14 ~~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~ 93 (311)
T PF02638_consen 14 DWPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVG 93 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEee
Confidence 34478999999999999999999999995 32 33322 111 137789999999999999999988553
Q ss_pred cCCC--CCC--CCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCcee
Q 009121 174 ALKQ--PKI--PLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (543)
Q Consensus 174 vgD~--~~I--pLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~ 249 (543)
.... ..+ .-|.|+. .++|+...+...+.-+.=||.++ .+.=++|+.+...++..-. .|.
T Consensus 94 ~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Y--dvD 156 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNY--DVD 156 (311)
T ss_pred cCCCchhhhhhcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcC--CCC
Confidence 1111 111 1366665 45566555554443332244422 3667888888888876521 355
Q ss_pred EEEeeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCCCCCCCCcccCCC
Q 009121 250 GISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNG 329 (543)
Q Consensus 250 eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~g 329 (543)
.|.+= --|||. .. + -||.+..+.|++.-. .. |. ....+.
T Consensus 157 GIhlD-----dy~yp~---~~--~---------g~~~~~~~~y~~~~g--------~~-~~------------~~~~d~- 195 (311)
T PF02638_consen 157 GIHLD-----DYFYPP---PS--F---------GYDFPDVAAYEKYTG--------KD-PF------------SSPEDD- 195 (311)
T ss_pred eEEec-----cccccc---cc--C---------CCCCccHHHHHHhcC--------cC-CC------------CCccch-
Confidence 55432 113331 11 1 245555666665411 00 00 000111
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhhcccccCCCCCCchHHHHHH
Q 009121 330 GSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEM 409 (543)
Q Consensus 330 g~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~m 409 (543)
.+.+|=.+.+.+-..+|-+..+++=. .|.+++=..|+- |.+-.+=|.....-
T Consensus 196 ---------~W~~WRr~~I~~~V~~i~~~ik~~kP--~v~~sisp~g~~-----------------~~~y~~~~qD~~~W 247 (311)
T PF02638_consen 196 ---------AWTQWRRDNINNFVKRIYDAIKAIKP--WVKFSISPFGIW-----------------NSAYDDYYQDWRNW 247 (311)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhCC--CCeEEEEeecch-----------------hhhhhheeccHHHH
Confidence 17778777777777777777776653 477777555442 13333457777777
Q ss_pred HhhCCcEEEEe
Q 009121 410 FAKNSCKMILP 420 (543)
Q Consensus 410 f~rh~~~l~FT 420 (543)
+++--++..++
T Consensus 248 ~~~G~iD~i~P 258 (311)
T PF02638_consen 248 LKEGYIDYIVP 258 (311)
T ss_pred HhcCCccEEEe
Confidence 77655666655
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.12 Score=54.70 Aligned_cols=199 Identities=20% Similarity=0.235 Sum_probs=118.6
Q ss_pred eEEeeee---eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee--cCCCCCCCCChhchhhhccCCCeeeecCCC
Q 009121 129 GVELPVW---WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH--ALKQPKIPLPDWVSQIGESQSSIFYTDQSG 203 (543)
Q Consensus 129 GV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~IpLP~WV~~~g~~~PDI~ytDr~G 203 (543)
.+-+++| |..+|+ .+|+|+|..=+++++.||++||++ -+| | -.-..|.|+. .|+
T Consensus 59 n~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~l----hGHtLv---W~~q~P~W~~-----------~~e-- 117 (345)
T COG3693 59 NQITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPL----HGHTLV---WHSQVPDWLF-----------GDE-- 117 (345)
T ss_pred cccccccccccccccC-CCCccCccchHHHHHHHHHcCCee----ccceee---ecccCCchhh-----------ccc--
Confidence 3556777 999998 999999999999999999999976 455 2 1125788886 222
Q ss_pred CccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEEeeccCCccCCCCCCCCCCCCCcCCCCccc
Q 009121 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEF 281 (543)
Q Consensus 204 ~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEF 281 (543)
+.+---.++++++...-..+|.+-+.+ +|.|+- --.| ++.++- |-.-+.|
T Consensus 118 ----------------~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~v-dd~g-------~~R~s~--w~~~~~g-- 169 (345)
T COG3693 118 ----------------LSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEAV-DDQG-------SLRRSA--WYDGGTG-- 169 (345)
T ss_pred ----------------cChHHHHHHHHHHHHHHHHhccCceeEEEeccccc-CCCc-------hhhhhh--hhccCCc--
Confidence 111123688899888888888885554 666653 2222 444433 5554554
Q ss_pred ccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 009121 282 QCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASS 361 (543)
Q Consensus 282 QCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~~HgdrIL~~A~~ 361 (543)
.+|+..+|+.+.++ .|+- .+|-|. |. -=.-.| |.+-++.+-+.
T Consensus 170 ---pd~I~~aF~~Area---------dP~A-----------kL~~ND---Y~----ie~~~~-------kr~~~~nlI~~ 212 (345)
T COG3693 170 ---PDYIKLAFHIAREA---------DPDA-----------KLVIND---YS----IEGNPA-------KRNYVLNLIEE 212 (345)
T ss_pred ---cHHHHHHHHHHHhh---------CCCc-----------eEEeec---cc----ccCChH-------HHHHHHHHHHH
Confidence 48999999988773 2322 333332 21 001111 22333333332
Q ss_pred hcCCCCceEEEEecceeecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCC
Q 009121 362 TFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEH 428 (543)
Q Consensus 362 ~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e 428 (543)
.-. .| ++|-|| +..|| ++-+ ++.-.++-..+ .-|.+-|+.+..|=|+|++..
T Consensus 213 Lke-kG----~pIDgi----G~QsH---~~~~--~~~~~~~~~a~-~~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 213 LKE-KG----APIDGI----GIQSH---FSGD--GPSIEKMRAAL-LKFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred HHH-CC----CCccce----eeeee---ecCC--CCCHHHHHHHH-HHHhhcCCCceEEEeeeeccC
Confidence 221 13 445555 34688 3322 23333333333 444555999999999999976
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=94.56 E-value=0.27 Score=51.18 Aligned_cols=217 Identities=18% Similarity=0.251 Sum_probs=117.6
Q ss_pred HHHHHHHcCcceEEee-ee-eeccccCCCceeechhHHHHHHHHHHcCCcEE--EEEEeecCCCCCCCCChhchhhhccC
Q 009121 118 GLKALKLLGVEGVELP-VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH--VSLCFHALKQPKIPLPDWVSQIGESQ 193 (543)
Q Consensus 118 ~L~~LK~~GVdGV~vd-VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~--~vmsFHvgD~~~IpLP~WV~~~g~~~ 193 (543)
..+.+-...++.|+.. .. |+.+|+ .+|+|||+.-+++++.|++.|++++ +.+. |. -.|.|+.+....+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~------~~P~w~~~~~~~~ 97 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS------QTPDWVFNLANGS 97 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS------SS-HHHHTSTTSS
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc------cccceeeeccCCC
Confidence 4555555667777755 23 999997 9999999999999999999999994 4444 31 5799998431111
Q ss_pred CCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcc--ccc--CceeEEEeeccCCccCCCCCCCCC
Q 009121 194 SSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP--FMG--TTITGISMGLGPDGELRYPSHHRL 269 (543)
Q Consensus 194 PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~--~l~--~~I~eI~VGlGP~GELRYPSyp~~ 269 (543)
|+= +|.+ .+...+++.....++.+ -+. |++-|+--.-|=.+.||-
T Consensus 98 ~~~----------~~~~---------------~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~------ 146 (320)
T PF00331_consen 98 PDE----------KEEL---------------RARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRD------ 146 (320)
T ss_dssp BHH----------HHHH---------------HHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCT------
T ss_pred ccc----------HHHH---------------HHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccC------
Confidence 100 0111 13344444444444442 122 244444222220122222
Q ss_pred CCCCcCCCCcccccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCccchhhHHHHHHHHHH
Q 009121 270 AKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLI 349 (543)
Q Consensus 270 ~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~ 349 (543)
.. | +.-+| +.|....|+.+-+..- ....|-|. |+....
T Consensus 147 ~~-~-~~~lG-----~~yi~~aF~~A~~~~P--------------------~a~L~~ND---y~~~~~------------ 184 (320)
T PF00331_consen 147 SP-W-YDALG-----PDYIADAFRAAREADP--------------------NAKLFYND---YNIESP------------ 184 (320)
T ss_dssp SH-H-HHHHT-----TCHHHHHHHHHHHHHT--------------------TSEEEEEE---SSTTST------------
T ss_pred Ch-h-hhccc-----HhHHHHHHHHHHHhCC--------------------CcEEEecc---ccccch------------
Confidence 10 1 11222 6788889988877432 13344443 444333
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCC
Q 009121 350 SHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQ 429 (543)
Q Consensus 350 ~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~ 429 (543)
.+.++++.+.+.+=.. +++|-+===--|+....+ .+.....++.|+..|+.+++|=|++.+...
T Consensus 185 ~k~~~~~~lv~~l~~~-gvpIdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~ 248 (320)
T PF00331_consen 185 AKRDAYLNLVKDLKAR-GVPIDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHITELDVRDDDN 248 (320)
T ss_dssp HHHHHHHHHHHHHHHT-THCS-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEEEEEEESSST
T ss_pred HHHHHHHHHHHHHHhC-CCccceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEEeeeecCCCC
Confidence 3455666665554422 444332111124333322 345777888888899999999999998876
Q ss_pred CC
Q 009121 430 PR 431 (543)
Q Consensus 430 p~ 431 (543)
+.
T Consensus 249 ~~ 250 (320)
T PF00331_consen 249 PP 250 (320)
T ss_dssp TS
T ss_pred Cc
Confidence 43
No 31
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=94.46 E-value=0.064 Score=58.62 Aligned_cols=98 Identities=19% Similarity=0.361 Sum_probs=61.5
Q ss_pred HHHHHHHHHHH-HcCcceEEeeeeeecc----------ccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCC
Q 009121 113 KAIAAGLKALK-LLGVEGVELPVWWGVA----------EKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (543)
Q Consensus 113 ~~~~~~L~~LK-~~GVdGV~vdVWWGiV----------E~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~Ip 181 (543)
..++.+|+.++ ++|+..|++ ||+. +..+...|||+..+++++.+.+.|||..+-|+|
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f--------- 106 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF--------- 106 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S---------
T ss_pred HHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe---------
Confidence 57889999996 789999975 4444 111222399999999999999999999999999
Q ss_pred CChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcc
Q 009121 182 LPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP 242 (543)
Q Consensus 182 LP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~ 242 (543)
-|.++... +.-.|. ..|+ ++ | -.-.+.+.|++++|..++.+
T Consensus 107 ~p~~~~~~----~~~~~~-~~~~-----~~------p----p~~~~~W~~lv~~~~~h~~~ 147 (486)
T PF01229_consen 107 MPMALASG----YQTVFW-YKGN-----IS------P----PKDYEKWRDLVRAFARHYID 147 (486)
T ss_dssp B-GGGBSS------EETT-TTEE------S-----------BS-HHHHHHHHHHHHHHHHH
T ss_pred chhhhcCC----CCcccc-ccCC-----cC------C----cccHHHHHHHHHHHHHHHHh
Confidence 68877521 111111 1111 11 1 12468999999999999988
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.93 E-value=0.25 Score=52.35 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCC
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQ 177 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~ 177 (543)
+.-|+.||+.||+.|++-|| |.|...|..|...-.++++-++++|||| .|-||-+|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHYSD~ 83 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHYSDF 83 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-SSSS
T ss_pred CCHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecccCC
Confidence 34678899999999999997 6664468899999999999999999999 999996664
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=89.66 E-value=1.1 Score=43.01 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCC--Ccee-ec-------hhHHHHHHHHHHcCCcEEEEEEe
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA--MGKY-NW-------SGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~--p~~Y-dW-------s~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+++|++.|+.||++|++.|.+- |.-.+... |-++ ++ +....+++.|.+.|+|| +++.
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv--~~Gl 85 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV--FVGL 85 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE--EEeC
Confidence 57899999999999999999776 54444322 3333 11 36889999999999999 5554
No 34
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=89.00 E-value=1.6 Score=49.15 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCC--ceeech---hHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChh
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAM--GKYNWS---GYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDW 185 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p--~~YdWs---~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~W 185 (543)
.--..+.|++.||++||++-+..+-|..+=|.+. +.-|.. .|..|++-..+.|++-.|-| || --||+|
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH------wDlPq~ 161 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH------WDLPQA 161 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec------CCCCHH
Confidence 3457899999999999999999999999999887 557775 58999999999999997766 46 458999
Q ss_pred chhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC--ceeEEE
Q 009121 186 VSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITGIS 252 (543)
Q Consensus 186 V~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~--~I~eI~ 252 (543)
+. |+.|-- | .++-++-++||.+=-=++|.|..+. ||.|..
T Consensus 162 Le------------DeYgGw--------------L-n~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~ 203 (524)
T KOG0626|consen 162 LE------------DEYGGW--------------L-NPEIVEDFRDYADLCFQEFGDRVKHWITFNEPN 203 (524)
T ss_pred HH------------HHhccc--------------c-CHHHHHHHHHHHHHHHHHhcccceeeEEecccc
Confidence 96 333322 1 2334788888888777888888776 777765
No 35
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=88.29 E-value=3.3 Score=42.59 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=55.5
Q ss_pred CceEEEeeece---eeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEE
Q 009121 91 AVRLFVGLPLD---TVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (543)
Q Consensus 91 ~vpv~VMlPLd---~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 167 (543)
.+||+||+=-- -+-+. ..-+.+.++++.+|++|+|||.+.+- ..+++.|...-++|++.++ |+++
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~v- 118 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAV- 118 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCce-
Confidence 69999998432 22222 23478999999999999999998764 3678999999999999994 7777
Q ss_pred EEEEee-cCCCC
Q 009121 168 VSLCFH-ALKQP 178 (543)
Q Consensus 168 ~vmsFH-vgD~~ 178 (543)
-|| .=|.+
T Consensus 119 ---TFHRAfD~~ 127 (248)
T PRK11572 119 ---TFHRAFDMC 127 (248)
T ss_pred ---EEechhhcc
Confidence 678 33443
No 36
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.72 E-value=7.3 Score=40.25 Aligned_cols=115 Identities=11% Similarity=0.195 Sum_probs=68.2
Q ss_pred CcHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceee-----chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCC
Q 009121 110 NHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYN-----WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPL 182 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~Yd-----Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpL 182 (543)
.+.+.+.+-++.+++.| ++.|.+|.-|-. .-+.|. |-.-+++++-+++.|+|+ ++..+ +.|..
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~--~l~i~----P~i~~ 96 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRV--TLWVH----PFINT 96 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeE--EEEEC----CeeCC
Confidence 45778999999999998 689999986532 123333 445788889999999998 66665 22221
Q ss_pred ChhchhhhccCCCeeeecCCCCccccccccccCC---cccCCCCChhHHHHHHHHHHH
Q 009121 183 PDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDD---LPVLDGKTPIQVYQEFCESFK 237 (543)
Q Consensus 183 P~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~---~pvl~GRTpiq~Y~dfm~sF~ 237 (543)
-.=+-+++.+ .+.+.++.+|.. .++.-+... .|-+......+.|.+.++.+.
T Consensus 97 ~s~~~~e~~~-~g~~vk~~~g~~--~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 97 DSENFREAVE-KGYLVSEPSGDI--PALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred CCHHHHhhhh-CCeEEECCCCCC--CcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 1122333333 478999988832 233222211 122222224556666555555
No 37
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=85.27 E-value=5 Score=39.70 Aligned_cols=110 Identities=15% Similarity=0.268 Sum_probs=65.9
Q ss_pred HHHHH-HHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCCCe
Q 009121 118 GLKAL-KLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSI 196 (543)
Q Consensus 118 ~L~~L-K~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~PDI 196 (543)
-|+.+ ...|+|.|.|+.++.. ...+++++.+++.|-|| |+|+|.-+ .+-+.+.|+.
T Consensus 83 ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f~-~tp~~~~l~~--------- 139 (228)
T TIGR01093 83 ELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDFQ-KTPSWEEIVE--------- 139 (228)
T ss_pred HHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCCC-CCCCHHHHHH---------
Confidence 35555 7789999999988742 24678888889999888 99999211 1111222321
Q ss_pred eeecCCCCccccccccccCCcccC-CCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCC
Q 009121 197 FYTDQSGQQFKGCLSLAVDDLPVL-DGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELR 262 (543)
Q Consensus 197 ~ytDr~G~rn~E~LSl~~D~~pvl-~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELR 262 (543)
.-.+..++|+|-+-+- -.+++.+..+ .+ +|..++... ..+.=|.++||+.|-+-
T Consensus 140 --------~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~--~~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 140 --------RLEKALSYGADIVKIAVMANSKEDVLT-LL-EITNKVDEH--ADVPLITMSMGDRGKIS 194 (228)
T ss_pred --------HHHHHHHhCCCEEEEEeccCCHHHHHH-HH-HHHHHHHhc--CCCCEEEEeCCCCChhH
Confidence 1134556777766542 3444433322 22 455555432 23455789999998653
No 38
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=84.56 E-value=2.4 Score=45.82 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
..+.|+++++..|++||||..+++. .+..+.+.-...+++.|++.|+|| .+||-
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEec
Confidence 5789999999999999999999996 334567889999999999999999 88884
No 39
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=84.46 E-value=12 Score=38.43 Aligned_cols=88 Identities=9% Similarity=0.199 Sum_probs=59.7
Q ss_pred cCcHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEeecCCCCCCC
Q 009121 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~Ip 181 (543)
-.+.+.+.+-++.++++| +|.+.+|.=|- ....-+.|+|+ --+++++-+++.|+|+ ++..|..-..+-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~i~~~~- 94 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPYIAQKS- 94 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCCCCCCc-
Confidence 357788999999999999 88899997443 21111255555 6889999999999998 777762211111
Q ss_pred CChhchhhhccCCCeeeecCCCCc
Q 009121 182 LPDWVSQIGESQSSIFYTDQSGQQ 205 (543)
Q Consensus 182 LP~WV~~~g~~~PDI~ytDr~G~r 205 (543)
| +-+++. .++.|.++.+|..
T Consensus 95 -~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 95 -P--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred -h--hHHHHH-HCCeEEECCCCCe
Confidence 2 233433 3488999988764
No 40
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=84.26 E-value=12 Score=36.76 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee-cCCCCCCCCChhchhhhcc
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-ALKQPKIPLPDWVSQIGES 192 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH-vgD~~~IpLP~WV~~~g~~ 192 (543)
...+-|+.+-.+|++.|.|+..+ +-..++++.+++.|-|| |+|+| -..++ +.+.|..-
T Consensus 77 ~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~tp--~~~~l~~~---- 135 (225)
T cd00502 77 EYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSGTP--SDEELVSR---- 135 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCCCc--CHHHHHHH----
Confidence 33444666777789999888654 24777888888889998 99999 22222 33344321
Q ss_pred CCCeeeecCCCCccccccccccCCcccC-CCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCC-CCCCCCCC
Q 009121 193 QSSIFYTDQSGQQFKGCLSLAVDDLPVL-DGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELR-YPSHHRLA 270 (543)
Q Consensus 193 ~PDI~ytDr~G~rn~E~LSl~~D~~pvl-~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELR-YPSyp~~~ 270 (543)
-.++-.+++|-+-+- -.+++.+..+ .+ .|..++.... .+.=|.++||+.|.+- -=+. .-.
T Consensus 136 -------------~~~~~~~gadivKla~~~~~~~D~~~-ll-~~~~~~~~~~--~~p~i~~~MG~~G~~SRil~~-~~g 197 (225)
T cd00502 136 -------------LEKMAALGADIVKIAVMANSIEDNLR-LL-KFTRQVKNLY--DIPLIAINMGELGKLSRILSP-VFG 197 (225)
T ss_pred -------------HHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhcC--CCCEEEEEcCCCCchhhcccc-ccC
Confidence 123334456655542 2333323222 22 3344443321 4456789999999643 1111 011
Q ss_pred CCCcCCCCcccccccHHHHHHHHH
Q 009121 271 KSSKIPGVGEFQCCDRNMLNLLQQ 294 (543)
Q Consensus 271 g~W~~PGiGEFQCYDky~~~~lr~ 294 (543)
.-+.|..+++-..-.+.-.+.+++
T Consensus 198 s~~t~~~~~~~sApGQ~~~~~l~~ 221 (225)
T cd00502 198 SPLTYASLPEPSAPGQLSVEELKQ 221 (225)
T ss_pred CcccccCCCCCCCCCCcCHHHHHH
Confidence 114554444444444444444443
No 41
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=84.08 E-value=12 Score=38.73 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEE
Q 009121 89 LDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (543)
Q Consensus 89 ~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 168 (543)
...+|+.+|.=...|-. ..+++=++.+|++||+||-++-- | +...+++.+.++++||++..
T Consensus 85 ~~~~pivlm~Y~N~i~~-------~G~e~F~~~~~~aGvdGlIipDL--------P----~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIFQ-------YGIERFFKEAKEAGVDGLIIPDL--------P----PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHHH-------H-HHHHHHHHHHHTEEEEEETTS--------B----GGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHhc-------cchHHHHHHHHHcCCCEEEEcCC--------C----hHHHHHHHHHHHHcCCeEEE
Confidence 45789999987776542 35777899999999999998643 2 34567889999999999966
Q ss_pred EEEeecCCCCCCCCChhchhhhccCCCeee-ecCCCCccccccccccCCcccCCCCChh-HHHHHHHHHHHHhh
Q 009121 169 SLCFHALKQPKIPLPDWVSQIGESQSSIFY-TDQSGQQFKGCLSLAVDDLPVLDGKTPI-QVYQEFCESFKSSF 240 (543)
Q Consensus 169 vmsFHvgD~~~IpLP~WV~~~g~~~PDI~y-tDr~G~rn~E~LSl~~D~~pvl~GRTpi-q~Y~dfm~sF~~~f 240 (543)
.++- + +.+..+..+.+.-+...| ....|.. +.|+.+ ..+.++.+..|+..
T Consensus 146 lv~p------~-t~~~Ri~~i~~~a~gFiY~vs~~GvT---------------G~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 146 LVAP------T-TPEERIKKIAKQASGFIYLVSRMGVT---------------GSRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp EEET------T-S-HHHHHHHHHH-SSEEEEESSSSSS---------------STTSSCHHHHHHHHHHHHHTT
T ss_pred EECC------C-CCHHHHHHHHHhCCcEEEeeccCCCC---------------CCcccchHHHHHHHHHHHhhc
Confidence 6553 2 247788777666556444 5777754 344433 45778888888776
No 42
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=82.51 E-value=2.2 Score=42.46 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=47.8
Q ss_pred CCCceEEEeeec---eeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCc
Q 009121 89 LDAVRLFVGLPL---DTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLK 165 (543)
Q Consensus 89 ~~~vpv~VMlPL---d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLK 165 (543)
...+|++||.=- |-+-+. ..-+.+..+++.+|++|++||.+.+ +- .+++.|-..-++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 558999999853 222222 2347899999999999999999865 33 578899999999999987 777
Q ss_pred EEEEEEee
Q 009121 166 LHVSLCFH 173 (543)
Q Consensus 166 v~~vmsFH 173 (543)
+ .||
T Consensus 117 ~----tFH 120 (201)
T PF03932_consen 117 V----TFH 120 (201)
T ss_dssp E----EE-
T ss_pred E----EEe
Confidence 6 678
No 43
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=81.46 E-value=14 Score=37.04 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=71.2
Q ss_pred CceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEE
Q 009121 91 AVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 91 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 170 (543)
.+|+.+|.=++.+-. ..+++-++.++++|++||.++-- | .....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~~-------~G~~~fi~~~~~aG~~giiipDl--------~----~ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPILQ-------YGLERFLRDAKEAGVDGLIIPDL--------P----PEEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHHH-------hCHHHHHHHHHHCCCcEEEECCC--------C----HHHHHHHHHHHHHcCCcEEEEe
Confidence 467777754443221 23577799999999999999521 1 1356789999999999996666
Q ss_pred EeecCCCCCCCCChhchhhhccCCC-eeeecCCCCccccccccccCCcccCCCCCh-hHHHHHHHHHHHHhhcccccCce
Q 009121 171 CFHALKQPKIPLPDWVSQIGESQSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTP-IQVYQEFCESFKSSFKPFMGTTI 248 (543)
Q Consensus 171 sFHvgD~~~IpLP~WV~~~g~~~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRTp-iq~Y~dfm~sF~~~f~~~l~~~I 248 (543)
+- .+.+.-+..+.+...| +++.... |+++|+++ .+--.++.+..|+.. +
T Consensus 137 ~P-------~T~~~~i~~i~~~~~~~vy~~s~~---------------g~tG~~~~~~~~~~~~i~~lr~~~-~------ 187 (242)
T cd04724 137 AP-------TTPDERIKKIAELASGFIYYVSRT---------------GVTGARTELPDDLKELIKRIRKYT-D------ 187 (242)
T ss_pred CC-------CCCHHHHHHHHhhCCCCEEEEeCC---------------CCCCCccCCChhHHHHHHHHHhcC-C------
Confidence 54 2234444444442334 4444443 45556653 233345555555531 2
Q ss_pred eEEEeeccCC
Q 009121 249 TGISMGLGPD 258 (543)
Q Consensus 249 ~eI~VGlGP~ 258 (543)
..|.||.|=+
T Consensus 188 ~pI~vggGI~ 197 (242)
T cd04724 188 LPIAVGFGIS 197 (242)
T ss_pred CcEEEEccCC
Confidence 3566776654
No 44
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=81.17 E-value=11 Score=38.28 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcC-cceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhc
Q 009121 113 KAIAAGLKALKLLG-VEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (543)
Q Consensus 113 ~~~~~~L~~LK~~G-VdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~ 191 (543)
+....-|+.+-.+| +|.|.|+..++. ...+++.+.+++.|.|| |+|+|. -.-+++.|-+.
T Consensus 95 ~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~---f~~tP~~~~l~--- 155 (253)
T PRK02412 95 EEYLALIKAVIKSGLPDYIDVELFSGK-----------DVVKEMVAFAHEHGVKV--VLSYHD---FEKTPPKEEIV--- 155 (253)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccCCh-----------HHHHHHHHHHHHcCCEE--EEeeCC---CCCCcCHHHHH---
Confidence 33334467777778 999999875531 34678889999999998 999992 11223344221
Q ss_pred cCCCeeeecCCCCccccccccccCCccc-CCCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccC
Q 009121 192 SQSSIFYTDQSGQQFKGCLSLAVDDLPV-LDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGEL 261 (543)
Q Consensus 192 ~~PDI~ytDr~G~rn~E~LSl~~D~~pv-l~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GEL 261 (543)
..-.++.++|+|-+-+ .-.+++.++.+ .+ .|..++..- ...+.=|.++||+-|-+
T Consensus 156 ------------~~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~-~~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 156 ------------ERLRKMESLGADIVKIAVMPQSEQDVLT-LL-NATREMKEL-YADQPLITMSMGKLGRI 211 (253)
T ss_pred ------------HHHHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhc-CCCCCEEEEeCCCCchH
Confidence 0123566777886654 34455444443 22 333333321 12344578999998864
No 45
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=81.12 E-value=11 Score=40.64 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCcceEEeeee-eeccccC---CCcee----echhHHHHHHHHHHcCCcEEEEEEee-cCCCCCCCCChhc
Q 009121 116 AAGLKALKLLGVEGVELPVW-WGVAEKE---AMGKY----NWSGYLAVAEMVEKIGLKLHVSLCFH-ALKQPKIPLPDWV 186 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVW-WGiVE~~---~p~~Y----dWs~Y~~l~~mv~~~GLKv~~vmsFH-vgD~~~IpLP~WV 186 (543)
+..+..+|++|++.|++++= |.+ +.- .|.-. .+ ..+++++-|++.||+| ++..| +...++=.=..|.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~~~~~~~~~s~~ 151 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYPGGNNGHEHSGY 151 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccCCCCCCcCcccc
Confidence 89999999999999999987 554 542 23222 24 8889999999999999 99999 2111111112232
Q ss_pred hhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCceeEEE
Q 009121 187 SQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGIS 252 (543)
Q Consensus 187 ~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~ 252 (543)
. +..+. .-+.++.|.+.-+..+.+|.. .+++..|+
T Consensus 152 ~------------~~~~~-----------------~~~~~~~~~~~w~~ia~~f~~--~~~VIg~~ 186 (407)
T COG2730 152 T------------SDYKE-----------------ENENVEATIDIWKFIANRFKN--YDTVIGFE 186 (407)
T ss_pred c------------ccccc-----------------cchhHHHHHHHHHHHHHhccC--CCceeeee
Confidence 2 21111 113468899999999999999 45554443
No 46
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.44 E-value=3.8 Score=39.77 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCcceEEeee-------eee-------ccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe-ecC
Q 009121 112 AKAIAAGLKALKLLGVEGVELPV-------WWG-------VAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF-HAL 175 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdV-------WWG-------iVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF-Hvg 175 (543)
.+.|.+.|..||++||++|.+.- +|| .|.+ .=| .++.+++|++.|++.|+||..=+-+ |.+
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~G--t~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDP-RFG--TMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEEST-TTB--HHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeecccc-ccc--hhhhhhhhhhccccccceEEEeeeccccc
Confidence 46788999999999999998852 233 1111 001 3567899999999999999443333 633
No 47
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=79.57 E-value=3.2 Score=43.16 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 90 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
.+|.|.+..--.. .+|..+-.+++++-|+.+++.||.||.||-+ .+++|+-=..|+++++.|.+++|-|
T Consensus 85 KgVgi~lw~~~~~--~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lmv--- 153 (273)
T PF10566_consen 85 KGVGIWLWYHSET--GGNVANLEKQLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLMV--- 153 (273)
T ss_dssp TT-EEEEEEECCH--TTBHHHHHCCHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-EE---
T ss_pred cCCCEEEEEeCCc--chhhHhHHHHHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcEE---
Confidence 4677666554333 1222222334699999999999999999976 3588889999999999999998854
Q ss_pred EEeecCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccc
Q 009121 170 LCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLA 213 (543)
Q Consensus 170 msFHvgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~ 213 (543)
-||. | ..|.=+ .+.+|.+ ..+.|.|-.|+-.+.
T Consensus 154 -nfHg---~--~kPtG~---~RTyPN~--mT~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 154 -NFHG---A--TKPTGL---RRTYPNL--MTREGVRGQEYNKWS 186 (273)
T ss_dssp -EETT---S-----TTH---HHCSTTE--EEE--S--GGGGGTT
T ss_pred -EecC---C--cCCCcc---cccCccH--HHHHHhhhhhhcccc
Confidence 8994 2 234322 2788976 467899999995444
No 48
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.45 E-value=7.4 Score=39.89 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=64.0
Q ss_pred CCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 90 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
..+|+.+|.=...|-. -.+++=++.+|++||+||-++- =| +...+++++.++++||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~~-------~G~e~f~~~~~~aGvdGviipD--------Lp----~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQ-------YGVERFAADAAEAGVDGLIIPD--------LP----PEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHhh-------cCHHHHHHHHHHcCCcEEEECC--------CC----HHHHHHHHHHHHHcCCcEEEE
Confidence 4578878876665432 2577789999999999999961 11 357789999999999999644
Q ss_pred EEeecCCCCCCCCChhchhhhccCCC-eeeecCCCCc
Q 009121 170 LCFHALKQPKIPLPDWVSQIGESQSS-IFYTDQSGQQ 205 (543)
Q Consensus 170 msFHvgD~~~IpLP~WV~~~g~~~PD-I~ytDr~G~r 205 (543)
++ ++.| +..+..+.+..++ |++....|..
T Consensus 149 va------p~t~-~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 149 VA------PTTT-DERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred eC------CCCC-HHHHHHHHHhCCCcEEEEeCCCCC
Confidence 43 3333 6788777777777 5555776654
No 49
>smart00642 Aamy Alpha-amylase domain.
Probab=78.11 E-value=8.7 Score=36.59 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=43.2
Q ss_pred cCcHHHHHHHHHHHHHcCcceEEeeeeeecccc-CCCcee-------------echhHHHHHHHHHHcCCcEEEEEEe
Q 009121 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEK-EAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.-+.+.+.+.|..||++||++|-+.-.+-..+. .....| +.+.++++++.|+++|++| ||-+
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~v--ilD~ 90 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKV--ILDV 90 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEE--EEEE
Confidence 345788999999999999999977543322210 000111 3467899999999999999 5544
No 50
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=77.15 E-value=5.4 Score=42.67 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCcceEEeeeeeecccc----CCCceeechhHHHHHHHHHHcCCcEEEEEEeecCC
Q 009121 115 IAAGLKALKLLGVEGVELPVWWGVAEK----EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALK 176 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD 176 (543)
-+.-|..||++||.-|++-||=-=-.. -+-|.=|-..--++.+-+++.|+|| .+-||-+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHYSD 128 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHYSD 128 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccchh
Confidence 455688999999999999999321111 1234556666667777778889999 99999544
No 51
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.73 E-value=32 Score=38.04 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=95.4
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeeee-eecc------ccCCCc-------eeechhHHHHHHHHHHcCCcEEEEEE
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVW-WGVA------EKEAMG-------KYNWSGYLAVAEMVEKIGLKLHVSLC 171 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiV------E~~~p~-------~YdWs~Y~~l~~mv~~~GLKv~~vms 171 (543)
...+..+..+...|..|..+|++.|-+-|| +|.+ .+...+ .=.|+-...+++.+++.||+|+|=+.
T Consensus 57 ~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 57 SRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred CcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechh
Confidence 346778999999999999999999999999 8843 332222 12455666777888899999987766
Q ss_pred ee-cCC-C--CCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCc
Q 009121 172 FH-ALK-Q--PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTT 247 (543)
Q Consensus 172 FH-vgD-~--~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~ 247 (543)
|- ++- + -..-=|.|+. .+.|+-.|....|.. +..++++= ++.=++|+.+...+...
T Consensus 137 ~~~~a~~~s~~~~~~p~~~~---~~~~~~~~~~~~~~~----------~~~~ldPg--~Pevq~~i~~lv~evV~----- 196 (418)
T COG1649 137 PYRMAPPTSPLTKRHPHWLT---TKRPGWVYVRHQGWG----------KRVWLDPG--IPEVQDFITSLVVEVVR----- 196 (418)
T ss_pred hcccCCCCChhHhhCCCCcc---cCCCCeEEEecCCce----------eeeEeCCC--ChHHHHHHHHHHHHHHh-----
Confidence 64 111 1 1111366776 555666666666642 11244332 35677888888877766
Q ss_pred eeEEEeeccCCccCCCCCCCC--CCCCCcCCCCcccccccHHHHHHHH
Q 009121 248 ITGISMGLGPDGELRYPSHHR--LAKSSKIPGVGEFQCCDRNMLNLLQ 293 (543)
Q Consensus 248 I~eI~VGlGP~GELRYPSyp~--~~g~W~~PGiGEFQCYDky~~~~lr 293 (543)
+|....- .+- |-||.- -.||++++.--|
T Consensus 197 --------------~YdvDGIQfDd~-fy~~~~---~gy~~~~~~~y~ 226 (418)
T COG1649 197 --------------NYDVDGIQFDDY-FYYPIP---FGYDPDTVTLYR 226 (418)
T ss_pred --------------CCCCCceeccee-ecccCc---cccCchHHHHHH
Confidence 6666543 121 334443 268888865444
No 52
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=76.20 E-value=15 Score=40.09 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeee-----------eccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee---cCC
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWW-----------GVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH---ALK 176 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWW-----------GiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH---vgD 176 (543)
+++.+.+.++++|++|++-+.+|-=| |.-++ .+.+|= +|.+.|++-|++.|||. =|.|= |+.
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~--GlW~ePe~v~~ 131 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKF--GLWFEPEMVSP 131 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EE--EEEEETTEEES
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeE--EEEeccccccc
Confidence 67899999999999999999998766 33332 333332 58999999999999999 56553 222
Q ss_pred CC--CCCCChhchh
Q 009121 177 QP--KIPLPDWVSQ 188 (543)
Q Consensus 177 ~~--~IpLP~WV~~ 188 (543)
+. .-.-|.|+..
T Consensus 132 ~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 132 DSDLYREHPDWVLR 145 (394)
T ss_dssp SSCHCCSSBGGBTC
T ss_pred hhHHHHhCccceee
Confidence 22 2225677663
No 53
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=74.97 E-value=3.5 Score=37.89 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=36.6
Q ss_pred HHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEE
Q 009121 119 LKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 119 L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 170 (543)
|+.++++|+++|++..++..-.. .+ -...+++.++++++||++..+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~-~~----~~~~~~~~~~~~~~gl~i~~~~ 47 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD-EK----DDEAEELRRLLEDYGLKIASLH 47 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT-HH----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc-cc----hHHHHHHHHHHHHcCCeEEEEe
Confidence 68899999999999998665442 11 4568899999999999974433
No 54
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=74.62 E-value=8.9 Score=37.92 Aligned_cols=50 Identities=16% Similarity=0.389 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCcee--ec--hhHHHHHHHHHHcCCcEEEEE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY--NW--SGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dW--s~Y~~l~~mv~~~GLKv~~vm 170 (543)
.++..|+.++++|+++|++ |+. .+..| ++ ..-+++.++++++||+|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~ 67 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYT 67 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEec
Confidence 5999999999999999998 321 11111 12 246778889999999984433
No 55
>PRK10658 putative alpha-glucosidase; Provisional
Probab=74.50 E-value=22 Score=41.27 Aligned_cols=87 Identities=10% Similarity=0.251 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC
Q 009121 111 HAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP 183 (543)
+.+.+..-++.+++.| +|.|.+|+.|.. ...-+.|.|+ --+++++-+++.|+|+ ++..+ +.|..-
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~--~~~i~----P~i~~~ 352 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKI--CVWIN----PYIAQK 352 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEE--EEecc----CCcCCC
Confidence 4666777788888776 589999998842 1112345553 4578889999999999 55564 223322
Q ss_pred hhchhhhccCCCeeeecCCCCcc
Q 009121 184 DWVSQIGESQSSIFYTDQSGQQF 206 (543)
Q Consensus 184 ~WV~~~g~~~PDI~ytDr~G~rn 206 (543)
.-+-+++.++ +.|.++.+|..-
T Consensus 353 s~~f~e~~~~-gy~vk~~~G~~~ 374 (665)
T PRK10658 353 SPLFKEGKEK-GYLLKRPDGSVW 374 (665)
T ss_pred chHHHHHHHC-CeEEECCCCCEe
Confidence 2344556555 889999998753
No 56
>PRK10785 maltodextrin glucosidase; Provisional
Probab=74.17 E-value=26 Score=39.86 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee-------------chhHHHHHHHHHHcCCcEEEEEEe-ecCC
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN-------------WSGYLAVAEMVEKIGLKLHVSLCF-HALK 176 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~vmsF-HvgD 176 (543)
|-+.+.+.|-.||++||++|-+-= +.|..+--.|+ ...+++|++.|++.|+||..=+-| |+|+
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 458999999999999999998754 23432333343 357899999999999999544444 5665
Q ss_pred CCCCCCChhchhhhc-----------cCCCeeeecCCCCccccccccc-cCCcccCCCCChhHHHHHHHH
Q 009121 177 QPKIPLPDWVSQIGE-----------SQSSIFYTDQSGQQFKGCLSLA-VDDLPVLDGKTPIQVYQEFCE 234 (543)
Q Consensus 177 ~~~IpLP~WV~~~g~-----------~~PDI~ytDr~G~rn~E~LSl~-~D~~pvl~GRTpiq~Y~dfm~ 234 (543)
+ -.|+..... .+.|-++-+..|. |.+++ ++.+|-|.=. .+..++++.
T Consensus 254 ~-----~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~--np~v~~~l~ 312 (598)
T PRK10785 254 S-----HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQ--SEEVVNEIY 312 (598)
T ss_pred C-----CHHHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCC--CHHHHHHHH
Confidence 4 127654321 1223444444443 33443 5678877533 356777765
No 57
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=73.23 E-value=11 Score=34.09 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHc-CCcEEEEEEee
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI-GLKLHVSLCFH 173 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv~~vmsFH 173 (543)
.+.+...++.||+.|||.|.+..= ++-. .|.- ---.++++.+++++. |++| |..||
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~-~~~~-~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKG-NPHG-PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecC-CCCC-CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 567889999999999999887642 3332 2111 344599999999999 9988 99988
No 58
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=73.12 E-value=33 Score=35.36 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 90 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
..+|+.+|.=+..|-. -.+++-++.++++||+||-++-- | +.-..++.+.++++||+....
T Consensus 90 ~~~p~vlm~Y~N~i~~-------~G~e~F~~~~~~aGvdgviipDL-----P-------~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVLH-------YGINKFIKKISQAGVKGLIIPDL-----P-------YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHHH-------hCHHHHHHHHHHcCCeEEEecCC-----C-------HHHHHHHHHHHHHcCCCEEEE
Confidence 4578777776655432 35788899999999999999754 1 234678999999999999666
Q ss_pred EEeecCCCCCCCCChhchhhhccCCC-eeeecCCCCcc
Q 009121 170 LCFHALKQPKIPLPDWVSQIGESQSS-IFYTDQSGQQF 206 (543)
Q Consensus 170 msFHvgD~~~IpLP~WV~~~g~~~PD-I~ytDr~G~rn 206 (543)
++- + +.+..+..+.+.-.. |++..+.|..-
T Consensus 151 v~P------t-T~~eri~~i~~~a~gFIY~vS~~GvTG 181 (263)
T CHL00200 151 IAP------T-SSKSRIQKIARAAPGCIYLVSTTGVTG 181 (263)
T ss_pred ECC------C-CCHHHHHHHHHhCCCcEEEEcCCCCCC
Confidence 665 2 346777776555443 55557777664
No 59
>PRK01060 endonuclease IV; Provisional
Probab=72.85 E-value=7.7 Score=38.61 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=42.8
Q ss_pred eeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 97 GLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 97 MlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
|+++++.++- .+.++..|+.++++|+++|++.+....- ..+..++=...+++-+++++.||++
T Consensus 1 ~~~~g~~~~~-----~~~~~~~l~~~~~~G~d~vEl~~~~p~~--~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVSA-----AGGLEGAVAEAAEIGANAFMIFTGNPQQ--WKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeeec-----CCCHHHHHHHHHHcCCCEEEEECCCCCC--CcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 6788877641 1238999999999999999996531100 0112233334677888999999997
No 60
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.63 E-value=7 Score=38.91 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=45.4
Q ss_pred eeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechh--HHHHHHHHHHcCCcEEEE
Q 009121 98 LPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSG--YLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 98 lPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~--Y~~l~~mv~~~GLKv~~v 169 (543)
+||.+... .++....++..++.+|++|+++|++.+. . .. .....++|+. .+++-++++++||+|..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~-~~-~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVD-E-SD-ERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecC-c-cc-cchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 56666542 2333347999999999999999999643 0 00 1123455653 678899999999999654
No 61
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=72.17 E-value=9.3 Score=38.47 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcceEEeeeeeec---cccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 116 AAGLKALKLLGVEGVELPVWWGV---AEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGi---VE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
+..|+.||++|++.|.++.= +. .+.-. +..+|..+.+.++.++++|+++.+-
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 56788999999999988743 21 11111 2468999999999999999987443
No 62
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=71.98 E-value=13 Score=39.76 Aligned_cols=86 Identities=9% Similarity=0.211 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEee--cCCCCCC
Q 009121 110 NHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFH--ALKQPKI 180 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~I 180 (543)
.+.+.+.+-++.+++.| +|++.+|.+|+.-. +.|.|+ ..+++++.+++.|+|+ ++..| +..+..
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~P~v~~~~~- 112 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKV--VLWVHPFVSNDSP- 112 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEESEEETTTT-
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEE--EEEeecccCCCCC-
Confidence 55788899999998875 68999999987622 244444 5799999999999999 66666 333222
Q ss_pred CCChhchhhhccCCCeeeecCCCCc
Q 009121 181 PLPDWVSQIGESQSSIFYTDQSGQQ 205 (543)
Q Consensus 181 pLP~WV~~~g~~~PDI~ytDr~G~r 205 (543)
.- . .-+.+++. ++++++.+|..
T Consensus 113 ~~-~-~~~~~~~~-~~~v~~~~g~~ 134 (441)
T PF01055_consen 113 DY-E-NYDEAKEK-GYLVKNPDGSP 134 (441)
T ss_dssp B--H-HHHHHHHT-T-BEBCTTSSB
T ss_pred cc-h-hhhhHhhc-CceeecccCCc
Confidence 00 1 22233333 78999999944
No 63
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=71.41 E-value=7.9 Score=38.70 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeec--hhHHHHHHHHHHcCCcEEEE
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW--SGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mv~~~GLKv~~v 169 (543)
.-.|...|+.++++|+++|++.++-. + ..+..++| ..-.++.++++++||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET--D-DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc--c-chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 34799999999999999999965421 1 12334444 44667888999999999433
No 64
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=71.23 E-value=31 Score=35.27 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhh----c
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG----E 191 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g----~ 191 (543)
..+|+.....||+.|.+-+= ..+++...+.++.+++.|++|.+-+.. ..-.-|..+.+.. +
T Consensus 85 ~~~l~~a~~~gv~~iri~~~----------~~~~~~~~~~i~~ak~~G~~v~~~~~~-----a~~~~~~~~~~~~~~~~~ 149 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFH----------KHEFDEALPLIKAIKEKGYEVFFNLMA-----ISGYSDEELLELLELVNE 149 (266)
T ss_pred HHHHHHHhcCCcCEEEEecc----------cccHHHHHHHHHHHHHCCCeEEEEEEe-----ecCCCHHHHHHHHHHHHh
Confidence 34688888999999998651 127888999999999999998766555 1123377777632 2
Q ss_pred cCCC-eeeecCCCCcc
Q 009121 192 SQSS-IFYTDQSGQQF 206 (543)
Q Consensus 192 ~~PD-I~ytDr~G~rn 206 (543)
.-+| |.+.|-.|.-+
T Consensus 150 ~g~~~i~l~DT~G~~~ 165 (266)
T cd07944 150 IKPDVFYIVDSFGSMY 165 (266)
T ss_pred CCCCEEEEecCCCCCC
Confidence 2344 67778777654
No 65
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=70.31 E-value=25 Score=35.84 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhc
Q 009121 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~ 191 (543)
+...++++.++|+++|.++.-|+.-.--+|..|. +-+++++++-+++.|.++ ++-. .|+.- ++-.++.+.
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~--~lH~-cG~~~--~~~~~l~~~-- 242 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV--IHHN-CGDTA--PILELMADL-- 242 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce--EEEE-CCCch--hHHHHHHHh--
Confidence 3455667778899999999988743322455555 999999999999998876 4433 23321 344455533
Q ss_pred cCCCeeeecCCCCc--------cccccccccCCcccCCCCChhHHHHHHHHHHHHhhc
Q 009121 192 SQSSIFYTDQSGQQ--------FKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (543)
Q Consensus 192 ~~PDI~ytDr~G~r--------n~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~ 241 (543)
..|++-.|..-.- .+-+|.-++|..-++..-|| +.=++..+...+.+.
T Consensus 243 -~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~-eei~~~v~~~l~~~~ 298 (330)
T cd03465 243 -GADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSP-EEIKEEVKELLEKLL 298 (330)
T ss_pred -CCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCH-HHHHHHHHHHHHHHh
Confidence 3466666643110 12356666666522322344 333344444444443
No 66
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=68.04 E-value=10 Score=42.67 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeech-----------------hHHHHHHHHHHcCCcEEEEEEe-
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWS-----------------GYLAVAEMVEKIGLKLHVSLCF- 172 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~vmsF- 172 (543)
+-..+...|..||++||++|.+-= +.| .|+.++|. .+++|++.+++.||+|..=+-+
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 347888999999999999997632 112 23445553 4899999999999999443333
Q ss_pred ecCC
Q 009121 173 HALK 176 (543)
Q Consensus 173 HvgD 176 (543)
|++.
T Consensus 184 H~~~ 187 (542)
T TIGR02402 184 HFGP 187 (542)
T ss_pred CCCC
Confidence 5543
No 67
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=67.85 E-value=9.7 Score=43.35 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=41.4
Q ss_pred HHHHHHHH-HHHHHcCcceEEe-eeeeeccccCCCceeec-----------------hhHHHHHHHHHHcCCcEEEEEEe
Q 009121 112 AKAIAAGL-KALKLLGVEGVEL-PVWWGVAEKEAMGKYNW-----------------SGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 112 ~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
-+.+...| ..||++||+.|.+ +|... |...+| ..+++|++.|++.||+| ||-+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~V--ilD~ 226 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGV--ILDW 226 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 46777786 9999999999998 66421 111122 24899999999999999 5544
Q ss_pred ---ecCCC
Q 009121 173 ---HALKQ 177 (543)
Q Consensus 173 ---HvgD~ 177 (543)
|.+.+
T Consensus 227 V~NH~~~~ 234 (613)
T TIGR01515 227 VPGHFPKD 234 (613)
T ss_pred cccCcCCc
Confidence 55543
No 68
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=67.84 E-value=26 Score=37.19 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=61.7
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhh----cc
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG----ES 192 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g----~~ 192 (543)
.+|+...+.||+.|.|-.-+...+ .-.+.++.+|+.|+++.+.+.. ..-.-|..+.+.. +.
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~----------~~~~~i~~ak~~G~~v~~~l~~-----a~~~~~e~l~~~a~~~~~~ 156 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD----------VSEQHIGLARELGMDTVGFLMM-----SHMAPPEKLAEQAKLMESY 156 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH----------HHHHHHHHHHHCCCeEEEEEEe-----ccCCCHHHHHHHHHHHHhC
Confidence 578999999999999887444332 3589999999999999876665 2233466666532 22
Q ss_pred CCC-eeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhh
Q 009121 193 QSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSF 240 (543)
Q Consensus 193 ~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f 240 (543)
-+| |.++|-.|.- || +.-.++.+.+++++
T Consensus 157 Ga~~i~i~DT~G~~------------------~P-~~v~~~v~~l~~~l 186 (337)
T PRK08195 157 GAQCVYVVDSAGAL------------------LP-EDVRDRVRALRAAL 186 (337)
T ss_pred CCCEEEeCCCCCCC------------------CH-HHHHHHHHHHHHhc
Confidence 344 5667777754 35 44556777777765
No 69
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=66.95 E-value=5.9 Score=42.71 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCcceEEee---ee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 113 KAIAAGLKALKLLGVEGVELP---VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
-.+...+++++++|++||++. +| |+..+.+. + .-++++-++++++||+|..|
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v 87 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMV 87 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEe
Confidence 356788999999999999874 23 44332111 1 22678999999999999443
No 70
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=65.80 E-value=63 Score=31.66 Aligned_cols=122 Identities=18% Similarity=0.296 Sum_probs=70.4
Q ss_pred eeeCCCccC-cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCC
Q 009121 102 TVSDANTVN-HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKI 180 (543)
Q Consensus 102 ~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~I 180 (543)
+...++... .++.-..-|+.+-.+|++.|.|+.+ .+.-.......+++.+-|| |+|+|.-+ -
T Consensus 63 ~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~S~H~f~---~ 125 (224)
T PF01487_consen 63 TKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--ILSYHDFE---K 125 (224)
T ss_dssp BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EEEEEESS----
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EEEeccCC---C
Confidence 334455443 3445555666677778998888655 1233333377788899999 99999211 1
Q ss_pred CCChh--chhhhccCCCeeeecCCCCccccccccccCCccc-CCCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccC
Q 009121 181 PLPDW--VSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPV-LDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGP 257 (543)
Q Consensus 181 pLP~W--V~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pv-l~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP 257 (543)
-|.| +.+ .-.+...+++|-+-+ ...+++.+..+ +..|..++... ..+.=|.++||+
T Consensus 126 -tp~~~~l~~----------------~~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~--~~~p~i~~~MG~ 184 (224)
T PF01487_consen 126 -TPSWEELIE----------------LLEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREE--PDIPVIAISMGE 184 (224)
T ss_dssp ---THHHHHH----------------HHHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHH--TSSEEEEEEETG
T ss_pred -CCCHHHHHH----------------HHHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhc--cCCcEEEEEcCC
Confidence 2444 221 223444566665543 34555555555 45555555543 567788999999
Q ss_pred CccC
Q 009121 258 DGEL 261 (543)
Q Consensus 258 ~GEL 261 (543)
.|.+
T Consensus 185 ~G~~ 188 (224)
T PF01487_consen 185 LGRI 188 (224)
T ss_dssp GGHH
T ss_pred Cchh
Confidence 9963
No 71
>PHA00442 host recBCD nuclease inhibitor
Probab=65.66 E-value=6.4 Score=32.22 Aligned_cols=27 Identities=48% Similarity=0.821 Sum_probs=22.1
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHc
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI 162 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~ 162 (543)
.-|.+|++.||| ||+||.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457788888886 899999999998653
No 72
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=65.52 E-value=37 Score=36.07 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhh----c
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG----E 191 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g----~ 191 (543)
..+|+...+.||+.|.|-.-....+ --.+.++.+|+.|+++++.+.. ..-.-|.-+.+.. +
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d----------~~~~~i~~ak~~G~~v~~~l~~-----s~~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD----------VSEQHIGMARELGMDTVGFLMM-----SHMTPPEKLAEQAKLMES 154 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH----------HHHHHHHHHHHcCCeEEEEEEc-----ccCCCHHHHHHHHHHHHh
Confidence 3578999999999999887443332 3689999999999999765544 2223366665532 2
Q ss_pred cCCC-eeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhc
Q 009121 192 SQSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (543)
Q Consensus 192 ~~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~ 241 (543)
.-+| |.++|-.|.-. | +...++.+.+++++.
T Consensus 155 ~Ga~~i~i~DT~G~~~------------------P-~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 155 YGADCVYIVDSAGAML------------------P-DDVRDRVRALKAVLK 186 (333)
T ss_pred cCCCEEEEccCCCCCC------------------H-HHHHHHHHHHHHhCC
Confidence 2344 56677777543 4 556778888887754
No 73
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=64.62 E-value=58 Score=36.47 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=46.3
Q ss_pred cCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCC-Cceee-------------chhHHHHHHHHHHcCCcEEEEEEe-e
Q 009121 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA-MGKYN-------------WSGYLAVAEMVEKIGLKLHVSLCF-H 173 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~vmsF-H 173 (543)
.-+-+.|.+.|..||++||++|-+.=. .|..+ ...|+ ...+++|++.|++.|+||..=+-+ |
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 356689999999999999999976543 23211 12232 467899999999999999554444 3
Q ss_pred cCCC
Q 009121 174 ALKQ 177 (543)
Q Consensus 174 vgD~ 177 (543)
+++.
T Consensus 101 ~s~~ 104 (539)
T TIGR02456 101 TSDQ 104 (539)
T ss_pred CCCC
Confidence 5543
No 74
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=64.55 E-value=58 Score=34.44 Aligned_cols=121 Identities=8% Similarity=0.123 Sum_probs=68.6
Q ss_pred cCcHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceeec-----hhH--HHHHHHHHHcCCcEEEEEEee--cCCC
Q 009121 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNW-----SGY--LAVAEMVEKIGLKLHVSLCFH--ALKQ 177 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdW-----s~Y--~~l~~mv~~~GLKv~~vmsFH--vgD~ 177 (543)
..+.+.+.+-++.+++.| +|+|.+|+=|.. .-+.|+| .-- +++++-+++.|+|| ++..| |..+
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~--~~~i~P~v~~~ 93 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHY--VPILDPAISAN 93 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEE--EEEEeCccccC
Confidence 456788889999998876 588888865531 2244544 345 88999999999999 55565 3211
Q ss_pred C-CCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHH
Q 009121 178 P-KIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKS 238 (543)
Q Consensus 178 ~-~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~ 238 (543)
. .-.-|. .+++.+. +.|.++.+|....-..-.|.-..|-+..-...+.|.+.++.+.+
T Consensus 94 ~~~~~~~~--~~e~~~~-g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 152 (339)
T cd06602 94 EPTGSYPP--YDRGLEM-DVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHD 152 (339)
T ss_pred cCCCCCHH--HHHHHHC-CeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHh
Confidence 0 001122 2344443 77889888865422221222223333222234555555555443
No 75
>PLN02591 tryptophan synthase
Probab=64.48 E-value=26 Score=35.98 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=61.6
Q ss_pred CCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 90 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++-. -++.-.++.+.++++||...+.
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipDL------------P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPDL------------PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCCC------------CHHHHHHHHHHHHHcCCeEEEE
Confidence 356877776665543 236788899999999999999821 2466678999999999999554
Q ss_pred EEeecCCCCCCCCChhchhhhccCCCeee-ecCCCCc
Q 009121 170 LCFHALKQPKIPLPDWVSQIGESQSSIFY-TDQSGQQ 205 (543)
Q Consensus 170 msFHvgD~~~IpLP~WV~~~g~~~PDI~y-tDr~G~r 205 (543)
.+- +.+ +..+..+.+.-++..| ..+.|..
T Consensus 138 v~P------tt~-~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 138 TTP------TTP-TERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred eCC------CCC-HHHHHHHHHhCCCcEEEeeCCCCc
Confidence 432 232 5678777666666443 3555444
No 76
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.23 E-value=61 Score=33.69 Aligned_cols=134 Identities=15% Similarity=0.156 Sum_probs=83.3
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEe---eee--eeccccCC-CceeechhHHHHHHHHHHcCCcEEEEEEe--e---c--
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVEL---PVW--WGVAEKEA-MGKYNWSGYLAVAEMVEKIGLKLHVSLCF--H---A-- 174 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~v---dVW--WGiVE~~~-p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF--H---v-- 174 (543)
.+-..+.+++.+..|...|.+.+++ |-+ -|.-|-.. .+.|.=+-++++.+.|++.|+.|+|-+-+ | .
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 6677899999999999999999976 333 44444322 68888899999999999999999776554 1 0
Q ss_pred ----CCCCCCCCChhchhhhccCCCe------eeecCCCCccccccccccCCcccCC---------CCChhHHHHHHHHH
Q 009121 175 ----LKQPKIPLPDWVSQIGESQSSI------FYTDQSGQQFKGCLSLAVDDLPVLD---------GKTPIQVYQEFCES 235 (543)
Q Consensus 175 ----gD~~~IpLP~WV~~~g~~~PDI------~ytDr~G~rn~E~LSl~~D~~pvl~---------GRTpiq~Y~dfm~s 235 (543)
.+-+..+-|..+... .+|+. ++.+=.-....+++-+|+|++..++ .++..+.|.+|++.
T Consensus 92 ~~~~~~l~~~~~~~~~l~~--~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 169 (301)
T cd06565 92 HPEFRHLREVDDPPQTLCP--GEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKK 169 (301)
T ss_pred CcccccccccCCCCCccCC--CChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHH
Confidence 001111111111111 01100 0000000011478999999998653 44566788888888
Q ss_pred HHHhhccc
Q 009121 236 FKSSFKPF 243 (543)
Q Consensus 236 F~~~f~~~ 243 (543)
..+...+.
T Consensus 170 v~~~v~~~ 177 (301)
T cd06565 170 VLKIIKKR 177 (301)
T ss_pred HHHHHHHc
Confidence 77777653
No 77
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.38 E-value=17 Score=35.94 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccC-CCceeech--hHHHHHHHHHHcCCcEEEE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKE-AMGKYNWS--GYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~YdWs--~Y~~l~~mv~~~GLKv~~v 169 (543)
.++..|+.++++|+++|++.+- +.. .....+|+ ..+++.++++++||+|..+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 6889999999999999998532 211 12234554 3678999999999999544
No 78
>PLN02361 alpha-amylase
Probab=63.10 E-value=18 Score=39.55 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeec-------------hhHHHHHHHHHHcCCcEEEEEEe-e
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW-------------SGYLAVAEMVEKIGLKLHVSLCF-H 173 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKv~~vmsF-H 173 (543)
-.+.+.+.|..||++||++|-+.-=. |..++.-|+- +.+++|++.+++.|+||.+=+-+ |
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 46899999999999999999876532 3222232332 46899999999999999554443 5
No 79
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=61.93 E-value=81 Score=33.09 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=56.0
Q ss_pred cCcHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEee--cCCCCC
Q 009121 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFH--ALKQPK 179 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~ 179 (543)
.++.+.+.+-++.+++.| +|+|.+|.=|.. .-+.|+|+ .-+++++-.++.|+|+ ++..| |.-++
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~--~~~~~P~v~~~~- 92 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKV--VTIIDPGVKVDP- 92 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEE--EEEEeCceeCCC-
Confidence 346778888899998886 588888865541 22335554 3579999999999999 55554 32111
Q ss_pred CCCChhchhhhccCCCeeeecCCCC
Q 009121 180 IPLPDWVSQIGESQSSIFYTDQSGQ 204 (543)
Q Consensus 180 IpLP~WV~~~g~~~PDI~ytDr~G~ 204 (543)
+.-+-+++.+. +.|.++.+|.
T Consensus 93 ---~~~~~~e~~~~-g~~v~~~~g~ 113 (339)
T cd06604 93 ---GYDVYEEGLEN-DYFVKDPDGE 113 (339)
T ss_pred ---CChHHHHHHHC-CeEEECCCCC
Confidence 11233445444 7899998885
No 80
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=60.34 E-value=12 Score=42.48 Aligned_cols=62 Identities=27% Similarity=0.592 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCcceEEe-eee---------------eecccc--CC-Ccee---------echhHHHHHHHHHHcCCc
Q 009121 114 AIAAGLKALKLLGVEGVEL-PVW---------------WGVAEK--EA-MGKY---------NWSGYLAVAEMVEKIGLK 165 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~v-dVW---------------WGiVE~--~~-p~~Y---------dWs~Y~~l~~mv~~~GLK 165 (543)
.+...|..||++||+.|.+ +|. ||--=. -+ +..| ....++++++.+++.||+
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 4556799999999999976 232 442100 00 0001 035699999999999999
Q ss_pred EEEEEEe-ecC
Q 009121 166 LHVSLCF-HAL 175 (543)
Q Consensus 166 v~~vmsF-Hvg 175 (543)
|..=+-| |.+
T Consensus 245 VilDvV~NH~~ 255 (605)
T TIGR02104 245 VIMDVVYNHTY 255 (605)
T ss_pred EEEEEEcCCcc
Confidence 9555555 544
No 81
>PRK12313 glycogen branching enzyme; Provisional
Probab=60.23 E-value=15 Score=41.94 Aligned_cols=55 Identities=20% Similarity=0.365 Sum_probs=39.3
Q ss_pred CcHHHHHHHH-HHHHHcCcceEEe-eeeeeccccCCCceeec-----------------hhHHHHHHHHHHcCCcEEEEE
Q 009121 110 NHAKAIAAGL-KALKLLGVEGVEL-PVWWGVAEKEAMGKYNW-----------------SGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 110 ~~~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKv~~vm 170 (543)
-.-+.+...| ..||++||+.|.+ +|+ | .|...+| ..+++|++.|++.||+| ||
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~V--il 238 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGV--IL 238 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEE--EE
Confidence 3456777774 9999999999985 332 2 1222233 35999999999999999 66
Q ss_pred Ee
Q 009121 171 CF 172 (543)
Q Consensus 171 sF 172 (543)
-+
T Consensus 239 D~ 240 (633)
T PRK12313 239 DW 240 (633)
T ss_pred EE
Confidence 54
No 82
>PLN02808 alpha-galactosidase
Probab=60.12 E-value=18 Score=39.56 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=45.1
Q ss_pred cHHHHHHHHHH-----HHHcCcceEEeeeeeeccccCCCceeec------hhHHHHHHHHHHcCCcE
Q 009121 111 HAKAIAAGLKA-----LKLLGVEGVELPVWWGVAEKEAMGKYNW------SGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 111 ~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKv 166 (543)
+++.+.+...+ ||++|.+.|.||.=|-..++.+.|..-. +|.+.|++.|++.|||.
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~Glkf 113 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKL 113 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCce
Confidence 67888888887 6999999999998887665544443222 68999999999999999
No 83
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=58.74 E-value=20 Score=35.15 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 167 (543)
-++..|+.++++|++||++.. . ++. ...++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~---~--------~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF---P--------YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC---C--------ccC-CHHHHHHHHHHcCCeEE
Confidence 588999999999999998842 1 122 25778889999999983
No 84
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=58.61 E-value=68 Score=32.19 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCC
Q 009121 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQS 194 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~P 194 (543)
.++-++.++++|+++|.+... -+|. .....++.+.++++||+. ++..| ++-| +.=+....+.-+
T Consensus 90 ~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~--~~~v~----p~T~-~e~l~~~~~~~~ 153 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKP--VFFTS----PKFP-DLLIHRLSKLSP 153 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCE--EEEEC----CCCC-HHHHHHHHHhCC
Confidence 555688889999999999521 0121 134678999999999999 66664 2222 222233334455
Q ss_pred Ceeeec
Q 009121 195 SIFYTD 200 (543)
Q Consensus 195 DI~ytD 200 (543)
.++|..
T Consensus 154 ~~l~ms 159 (244)
T PRK13125 154 LFIYYG 159 (244)
T ss_pred CEEEEE
Confidence 666653
No 85
>PLN02389 biotin synthase
Probab=57.42 E-value=21 Score=38.56 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCcceEEeeeeeeccccCCC-------ceeechhHHHHHHHHHHcCCcE
Q 009121 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAM-------GKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
-+.+|++||++|++.+.+. +|. .| ..-+|+.+.+.++.+++.|+++
T Consensus 177 ~~E~l~~LkeAGld~~~~~-----LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHN-----LDT-SREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred CHHHHHHHHHcCCCEEEee-----ecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 4678999999999999883 552 22 1238999999999999999988
No 86
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=57.31 E-value=30 Score=38.84 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=46.3
Q ss_pred cCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee-------------echhHHHHHHHHHHcCCcEEEEEEe-ec
Q 009121 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCF-HA 174 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsF-Hv 174 (543)
.-+-+.+...|..||++||++|-+.--.-.-+ ....| ....+++|++.|+++||||..=+-+ |+
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 34668899999999999999997754432111 11233 3457899999999999999554444 45
Q ss_pred CC
Q 009121 175 LK 176 (543)
Q Consensus 175 gD 176 (543)
++
T Consensus 101 ~~ 102 (543)
T TIGR02403 101 ST 102 (543)
T ss_pred cc
Confidence 44
No 87
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=56.66 E-value=31 Score=36.72 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=67.0
Q ss_pred eeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCC
Q 009121 102 TVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (543)
Q Consensus 102 ~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~Ip 181 (543)
+|...+.....+++++.++.|+..|.+.|--..=+...+.-+.. +=+=-.+|-++..+-..|+ |||.=+|..++==
T Consensus 15 iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il~~rGGygs~rl 90 (313)
T COG1619 15 IIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--ILCVRGGYGSNRL 90 (313)
T ss_pred EEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EEEcccCCChhhh
Confidence 34444444468899999999999998887766555444321100 0123456667777777777 9999999999999
Q ss_pred CChhchhhhccCCCeee
Q 009121 182 LPDWVSQIGESQSSIFY 198 (543)
Q Consensus 182 LP~WV~~~g~~~PDI~y 198 (543)
||.|-.+..+++|-||+
T Consensus 91 Lp~ld~~~i~~~pKifi 107 (313)
T COG1619 91 LPYLDYDLIRNHPKIFI 107 (313)
T ss_pred hhhcchHHHhcCCceEE
Confidence 99999888899998875
No 88
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.44 E-value=48 Score=34.29 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred ceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 100 LDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 100 Ld~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+-+|.-=|.+.+++++..--++||++|+..+....|==..-+.+-+-+-.++|+.+.+.+++.||.+ +-.+|
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 4444444667889999999999999999988888662110010111112678999999999999998 55554
No 89
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=56.00 E-value=28 Score=39.29 Aligned_cols=65 Identities=15% Similarity=0.379 Sum_probs=44.3
Q ss_pred cCcHHHHHHHHHHHHHcCcceEEeeeeeecccc-CCCceee-------------chhHHHHHHHHHHcCCcEEEEEEe-e
Q 009121 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEK-EAMGKYN-------------WSGYLAVAEMVEKIGLKLHVSLCF-H 173 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~vmsF-H 173 (543)
.-+-+.+.+.|..||++||++|-+.-.+ +. .....|+ .+.+++|++.++++|+||..=+-+ |
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~---~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFY---VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCC---CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3467889999999999999999764432 11 0112232 346899999999999999443333 3
Q ss_pred cCC
Q 009121 174 ALK 176 (543)
Q Consensus 174 vgD 176 (543)
+++
T Consensus 106 ~s~ 108 (551)
T PRK10933 106 TST 108 (551)
T ss_pred ccC
Confidence 444
No 90
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=55.83 E-value=71 Score=32.65 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHHcCcceEEeeee---eecccc-CCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhc-
Q 009121 117 AGLKALKLLGVEGVELPVW---WGVAEK-EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE- 191 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVW---WGiVE~-~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~- 191 (543)
..++++++.|++.|++-+= +-+-+. ....+..+.-..++++++++.|+++++. +.|..|....+ |..+.+..+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~~~~~d~~~~~-~~~~~~~~~~ 159 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD-AEHFFDGYKAN-PEYALATLKA 159 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe-EEeccccCCCC-HHHHHHHHHH
Confidence 5677788999999887432 111111 1122346788999999999999999774 44444544444 777765321
Q ss_pred ---cCC-CeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhc
Q 009121 192 ---SQS-SIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (543)
Q Consensus 192 ---~~P-DI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~ 241 (543)
.-+ .|.+.|-.|.- ||.+ ..++.+.+++++.
T Consensus 160 ~~~~g~~~i~l~DT~G~~------------------~P~~-v~~lv~~l~~~~~ 194 (273)
T cd07941 160 AAEAGADWLVLCDTNGGT------------------LPHE-IAEIVKEVRERLP 194 (273)
T ss_pred HHhCCCCEEEEecCCCCC------------------CHHH-HHHHHHHHHHhCC
Confidence 112 35556666644 4644 4566677777654
No 91
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=54.87 E-value=25 Score=36.32 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=60.4
Q ss_pred CCceEEEeeec---eeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 90 DAVRLFVGLPL---DTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 90 ~~vpv~VMlPL---d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
..+|||+|.== |-|-++. .-+.+..|.+..|++|++||.+.+- ..+|+.|=.-.++|.+.+. ||.|
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~---E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDD---ELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChH---HHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 78999999732 2333323 3478999999999999999998763 4789999999999998876 6766
Q ss_pred EEEEEee-cCCCCCCCCCh--hchhh
Q 009121 167 HVSLCFH-ALKQPKIPLPD--WVSQI 189 (543)
Q Consensus 167 ~~vmsFH-vgD~~~IpLP~--WV~~~ 189 (543)
.|| .-|-|.=|++. |+.+.
T Consensus 119 ----TFHrAFD~~~d~~~ale~li~~ 140 (241)
T COG3142 119 ----TFHRAFDECPDPLEALEQLIEL 140 (241)
T ss_pred ----eeehhhhhcCCHHHHHHHHHHC
Confidence 567 22333334443 55543
No 92
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=54.18 E-value=9.6 Score=37.67 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
..+.+...++|+|+|.+=++|+.+.+ +...+...--.++.+.|+++|||+.+-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67788889999999999999999885 657777778888888999999999443
No 93
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=54.09 E-value=37 Score=40.82 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee-------------echhHHHHHHHHHHcCCcEEEEEEe
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
-+.+.+.|..|+++||+.|-+.--+-... .+...| ..+.++++++.++++|||| ||-+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~-gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~V--IlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARP-GSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGL--ILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCC-CCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 46799999999999999997654332111 011122 3578999999999999999 5554
No 94
>PRK09989 hypothetical protein; Provisional
Probab=54.03 E-value=27 Score=34.59 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 167 (543)
-+...|++++++|+++|++..-| .++ -+++.++++++||++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~---------~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPY---------DYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc---------cCC---HHHHHHHHHHcCCcEE
Confidence 47899999999999999994211 233 3578888999999983
No 95
>PRK04302 triosephosphate isomerase; Provisional
Probab=53.75 E-value=29 Score=34.19 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+..++.||++|+++|.++- ++++-.+.--.++++.++++||.+ |++.|
T Consensus 75 ~~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~ 122 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLES--VVCVN 122 (223)
T ss_pred hhHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeE--EEEcC
Confidence 3458899999999998863 333344555788999999999988 67875
No 96
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=53.23 E-value=24 Score=43.42 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHcCcceEEe-eee-eeccc-cC----------CCceeech-------------------------hH
Q 009121 111 HAKAIAAGLKALKLLGVEGVEL-PVW-WGVAE-KE----------AMGKYNWS-------------------------GY 152 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~v-dVW-WGiVE-~~----------~p~~YdWs-------------------------~Y 152 (543)
.-.+|...|..||++||+.|.+ +|+ .+.+. .. +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 3468888999999999999975 333 32221 00 11235454 48
Q ss_pred HHHHHHHHHcCCcEE
Q 009121 153 LAVAEMVEKIGLKLH 167 (543)
Q Consensus 153 ~~l~~mv~~~GLKv~ 167 (543)
+++++.++++||+|.
T Consensus 558 K~LV~alH~~GI~VI 572 (1111)
T TIGR02102 558 KNLINEIHKRGMGVI 572 (1111)
T ss_pred HHHHHHHHHCCCEEE
Confidence 899999999999993
No 97
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=53.02 E-value=81 Score=31.52 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCcceEEe-eeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 115 IAAGLKALKLLGVEGVEL-PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
....++.++++||..+.+ .... ..++.+.+++++++.+|.+.+.+|
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVSTDP-------------EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSH-------------HHHHHHHHHHHHTTTEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEcCCCH-------------HHhHHHHHHHhcCCCeEEEEecCC
Confidence 677889999999998842 2222 345588899999999999999999
No 98
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.59 E-value=1.5e+02 Score=30.88 Aligned_cols=85 Identities=8% Similarity=0.180 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHHHc--CcceEEeee-eeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEee--cCCCCC
Q 009121 110 NHAKAIAAGLKALKLL--GVEGVELPV-WWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFH--ALKQPK 179 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~--GVdGV~vdV-WWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~ 179 (543)
.+.+.+..-++.+++. -+|.|.+|. ||+ ..+-+.|+|+ --+++++-+++.|+|| |+..| |..+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv--~~~i~P~v~~~-- 93 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAEL--MISIWPTFGPE-- 93 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEE--EEEecCCcCCC--
Confidence 5678889999999888 679999996 453 1121366666 5788999999999999 55555 3221
Q ss_pred CCCChhchhhhccCCCeeeecCCCCcc
Q 009121 180 IPLPDWVSQIGESQSSIFYTDQSGQQF 206 (543)
Q Consensus 180 IpLP~WV~~~g~~~PDI~ytDr~G~rn 206 (543)
-|. -+++++. +.++++..|...
T Consensus 94 --~~~--y~e~~~~-g~~v~~~~g~~~ 115 (319)
T cd06591 94 --TEN--YKEMDEK-GYLIKTDRGPRV 115 (319)
T ss_pred --Chh--HHHHHHC-CEEEEcCCCCee
Confidence 122 2344443 789999888754
No 99
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=52.34 E-value=14 Score=26.58 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=12.9
Q ss_pred HHHHHHHHcCcceEEee
Q 009121 117 AGLKALKLLGVEGVELP 133 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vd 133 (543)
+..++|-.+||||||.|
T Consensus 11 ~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 11 ASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHcCCCEeeCC
Confidence 44577888999999987
No 100
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=51.38 E-value=28 Score=38.19 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee---e-------------------chhHHHHHHHHHHcCCcEEEE
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---N-------------------WSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---d-------------------Ws~Y~~l~~mv~~~GLKv~~v 169 (543)
++.+...|..||.+||++|-+.-.+--........| | ..-+++|++.|++.|+||.+=
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 578999999999999999977654322211011122 2 234889999999999999554
Q ss_pred EEe-ecC
Q 009121 170 LCF-HAL 175 (543)
Q Consensus 170 msF-Hvg 175 (543)
+-| |.+
T Consensus 101 ~V~NH~~ 107 (479)
T PRK09441 101 VVLNHKA 107 (479)
T ss_pred ECccccc
Confidence 444 443
No 101
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=51.33 E-value=47 Score=34.75 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeecccc----CCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEK----EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+-+..++-..-..++|++.|.||..|---+. .--..+.+....+|++-+++.|.+| +|-.|
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi--~lw~~ 94 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI--WLWYH 94 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE--EEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE--EEEEe
Confidence 4567777788889999999999999975332 1124677899999999999999999 77777
No 102
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=49.91 E-value=1.7e+02 Score=30.64 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=55.6
Q ss_pred cCcHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEeecCCCCCCC
Q 009121 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~Ip 181 (543)
..+.+.+..-++.+++.+ +|.|.+|+=|. . +-+.|+|+ --+++++-+++.|+||.+++-=|+..+..
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~-- 93 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQN-- 93 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCC--
Confidence 456778888899998876 58888886552 1 23455554 46789999999999994444333432221
Q ss_pred CChhchhhhccCCCeeeecCCCC
Q 009121 182 LPDWVSQIGESQSSIFYTDQSGQ 204 (543)
Q Consensus 182 LP~WV~~~g~~~PDI~ytDr~G~ 204 (543)
-|.+ +++.+ -+.|.++.+|.
T Consensus 94 ~~~~--~~~~~-~~~~v~~~~g~ 113 (317)
T cd06600 94 YSPF--LSGMD-KGKFCEIESGE 113 (317)
T ss_pred ChHH--HHHHH-CCEEEECCCCC
Confidence 1333 23333 37788888875
No 103
>PLN02877 alpha-amylase/limit dextrinase
Probab=49.58 E-value=28 Score=42.19 Aligned_cols=55 Identities=27% Similarity=0.551 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcceEEe-eee-eecc-ccCC-----------------------------Cceeechh------------
Q 009121 116 AAGLKALKLLGVEGVEL-PVW-WGVA-EKEA-----------------------------MGKYNWSG------------ 151 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~v-dVW-WGiV-E~~~-----------------------------p~~YdWs~------------ 151 (543)
-.-|+.||++||..|++ +|+ .+-| |... ...|+|-|
T Consensus 376 i~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSY 455 (970)
T PLN02877 376 VLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSY 455 (970)
T ss_pred HHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCccc
Confidence 45588899999999986 666 5444 2110 13488866
Q ss_pred ------------HHHHHHHHHHcCCcEEEEEEe
Q 009121 152 ------------YLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 152 ------------Y~~l~~mv~~~GLKv~~vmsF 172 (543)
++++++-++++||+| ||-.
T Consensus 456 atdP~g~~RI~efk~mV~~lH~~GI~V--ImDV 486 (970)
T PLN02877 456 ASNPDGPCRIIEFRKMVQALNRIGLRV--VLDV 486 (970)
T ss_pred ccCCCCcchHHHHHHHHHHHHHCCCEE--EEEE
Confidence 899999999999999 6654
No 104
>PRK09875 putative hydrolase; Provisional
Probab=49.52 E-value=59 Score=34.05 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=46.0
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeeee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
+..+.+.+.....|+.+|++|+..| ||+= .|+ |+ .-..|.++.++.|+.| |++| |=-...-.|.
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T~~g~------GR----d~~~l~~is~~tgv~I--v~~T--G~y~~~~~p~ 91 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMTNRYM------GR----NAQFMLDVMRETGINV--VACT--GYYQDAFFPE 91 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecCCCcc------Cc----CHHHHHHHHHHhCCcE--EEcC--cCCCCccCCH
Confidence 3467788999999999999999887 5543 222 22 2467888999999988 6666 2112223677
Q ss_pred hch
Q 009121 185 WVS 187 (543)
Q Consensus 185 WV~ 187 (543)
|+.
T Consensus 92 ~~~ 94 (292)
T PRK09875 92 HVA 94 (292)
T ss_pred HHh
Confidence 775
No 105
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=49.33 E-value=27 Score=34.54 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
.++..|++++++|++||++. + + .. ...+++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~---~---~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F---P---YD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C---C---CC---CCHHHHHHHHHHcCCcE
Confidence 48889999999999999992 2 1 11 24788889999999998
No 106
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=49.25 E-value=30 Score=35.89 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCcee---echhHHHHHHHHHHcCCcEEEEEEeecCCC
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---NWSGYLAVAEMVEKIGLKLHVSLCFHALKQ 177 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~ 177 (543)
...++++.++|+++|.+..-|+.-.--+|.+| -+.+++++++-+++.|... ++.+ .|+.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--ilH~-CG~~ 244 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--VLHI-CGFT 244 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--EEEE-CCCc
Confidence 45556778999999988877863222345544 4999999999999887543 5533 4443
No 107
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=49.22 E-value=1.5e+02 Score=31.29 Aligned_cols=117 Identities=9% Similarity=0.065 Sum_probs=68.9
Q ss_pred cCcHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEee--cCCCCC
Q 009121 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFH--ALKQPK 179 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~ 179 (543)
-.+.+.+..-++.+++.| +|.|.+|.=|- .+.+.|+|+ --+++++-+++.|+|| ++..| |..++.
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~--~~~~~P~v~~~~~ 93 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKL--VTIVDPHIKRDDG 93 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEE--EEEecCceecCCC
Confidence 356778888888888876 57888886442 134456554 3567889999999999 66666 443322
Q ss_pred CCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHH
Q 009121 180 IPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (543)
Q Consensus 180 IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF 236 (543)
.|. -+++.+. +.+.++.+|....-+.=.|.--.|-+..-...+.|.+.++.+
T Consensus 94 --~~~--y~e~~~~-g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 94 --YYV--YKEAKDK-GYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred --CHH--HHHHHHC-CeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 222 2344444 889999988542111111112234444334556666666544
No 108
>PLN02692 alpha-galactosidase
Probab=49.19 E-value=33 Score=37.93 Aligned_cols=56 Identities=32% Similarity=0.405 Sum_probs=41.8
Q ss_pred cHHHHHHHHHH-----HHHcCcceEEeeeeeeccccCCCceeec------hhHHHHHHHHHHcCCcE
Q 009121 111 HAKAIAAGLKA-----LKLLGVEGVELPVWWGVAEKEAMGKYNW------SGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 111 ~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKv 166 (543)
+++.+.+...+ ||++|.+.|.||.=|-..++...|..-. +|.+.|++.|++.|||.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 66777776665 4888999999998664434333343333 68999999999999999
No 109
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=49.15 E-value=8.7 Score=37.58 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
.+.++++|.+||+.||..|-+ ++|...=..|... .|.+.++++||++
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~ 103 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAW 103 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEE
Confidence 467999999999999999865 6777555555554 5668899999988
No 110
>PLN02229 alpha-galactosidase
Probab=48.65 E-value=28 Score=38.58 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=42.9
Q ss_pred cHHHHHHHHHH-----HHHcCcceEEeeeeeeccccCC-------CceeechhHHHHHHHHHHcCCcE
Q 009121 111 HAKAIAAGLKA-----LKLLGVEGVELPVWWGVAEKEA-------MGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 111 ~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~-------p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
+++.+.+...+ ||++|.+-|.||.=|...++.. |.+|- +|.+.|++.+++.|||+
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKf 144 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKL 144 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCce
Confidence 67888888887 5999999999998664333322 33343 58999999999999998
No 111
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=48.50 E-value=71 Score=34.49 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=53.0
Q ss_pred CceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEE
Q 009121 91 AVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 91 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 170 (543)
+-|+++-.| |.+...+++...-+.||++||..+.-..|==..-+.+-+-..+.+|+.|.+.+++.||.+ +-
T Consensus 117 ~~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~--~t 187 (360)
T PRK12595 117 GNQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV--IS 187 (360)
T ss_pred CCeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--EE
Confidence 445555555 566778999999999999999999876663222222233445789999999999999998 44
Q ss_pred Eee
Q 009121 171 CFH 173 (543)
Q Consensus 171 sFH 173 (543)
+.|
T Consensus 188 ~v~ 190 (360)
T PRK12595 188 EIV 190 (360)
T ss_pred eeC
Confidence 444
No 112
>PRK03906 mannonate dehydratase; Provisional
Probab=47.58 E-value=24 Score=38.45 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=37.9
Q ss_pred HHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 118 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.|..+|++||+||.... -.-.....++-....++-++|+++||+|-||=|.
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~ 65 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVESV 65 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 47788999999999653 1111223455566888999999999999998776
No 113
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=47.56 E-value=37 Score=34.52 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+.++++++|+.||++|++.|++- ...+. .++.++|.+.||-|..=+..
T Consensus 33 ~~~~~~~~d~~l~k~~G~N~iR~~---h~p~~-----------~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 33 MPDEAMERDLELMKEMGFNAIRTH---HYPPS-----------PRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEET---TS--S-----------HHHHHHHHHHT-EEEEE-S-
T ss_pred CCHHHHHHHHHHHHhcCcceEEcc---cccCc-----------HHHHHHHhhcCCEEEEeccc
Confidence 467899999999999999999982 22221 57788999999999554433
No 114
>PLN00196 alpha-amylase; Provisional
Probab=47.12 E-value=45 Score=36.68 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee------ec--------hhHHHHHHHHHHcCCcEEEEEEe
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY------NW--------SGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dW--------s~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
..+.+...|..||++||+.|-+.-= .|+.++..| +- ..+++|++.+++.|+||.+=+-|
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3678999999999999999988742 233233333 22 25999999999999999443333
No 115
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=46.77 E-value=96 Score=32.25 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCce------eechhHHHHHHHHHHcCCcEEEEEEeecC--CCCCCCCChhch
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGK------YNWSGYLAVAEMVEKIGLKLHVSLCFHAL--KQPKIPLPDWVS 187 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mv~~~GLKv~~vmsFHvg--D~~~IpLP~WV~ 187 (543)
..++++..++|++.|.+-+ ..-|...-.+ -.+.-..+.++.++++|+++++.+++-.+ +...+ -|..+.
T Consensus 82 ~~~ie~A~~~g~~~v~i~~--~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~ 158 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFA--SASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVA 158 (287)
T ss_pred HHHHHHHHHcCCCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHH
Confidence 3455667788999887765 2222111112 24556889999999999999988887532 12223 367776
Q ss_pred hhhc----cCC-CeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhc
Q 009121 188 QIGE----SQS-SIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (543)
Q Consensus 188 ~~g~----~~P-DI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~ 241 (543)
+..+ .-. .|.+.|-.|.- +|. ...+.++.+++++.
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~------------------~P~-~v~~lv~~l~~~~~ 198 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVG------------------TPG-QVRAVLEAVLAEFP 198 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCcc------------------CHH-HHHHHHHHHHHhCC
Confidence 6422 112 35555655554 464 45668888887764
No 116
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.34 E-value=1e+02 Score=32.12 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCc--ceEEeeeeeeccccCCCceeechh-----HHHHHHHHHHcCCcEEEEEEee--cCCCCCCCC
Q 009121 112 AKAIAAGLKALKLLGV--EGVELPVWWGVAEKEAMGKYNWSG-----YLAVAEMVEKIGLKLHVSLCFH--ALKQPKIPL 182 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GV--dGV~vdVWWGiVE~~~p~~YdWs~-----Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~IpL 182 (543)
.+.+..-++.+++.|+ |.|.+|.=|-.-+...-+.|+|.- -+++++-+++.|+|+ +++.| +..+ -
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~~~--~-- 101 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLLQD--H-- 101 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCcccCC--C--
Confidence 6778888889988874 788887433222221223466643 678899999999999 66666 3211 1
Q ss_pred ChhchhhhccCCCeeeecCCCCc
Q 009121 183 PDWVSQIGESQSSIFYTDQSGQQ 205 (543)
Q Consensus 183 P~WV~~~g~~~PDI~ytDr~G~r 205 (543)
|. -+++++. +.|.++.+|..
T Consensus 102 ~~--y~e~~~~-g~~v~~~~g~~ 121 (317)
T cd06599 102 PR--YKELKEA-GAFIKPPDGRE 121 (317)
T ss_pred HH--HHHHHHC-CcEEEcCCCCC
Confidence 22 3444554 78889887763
No 117
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=46.12 E-value=20 Score=37.66 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCcceEEe---eee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 115 IAAGLKALKLLGVEGVEL---PVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~v---dVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+..|++||+||++.+.. +.. -.+...-.|++-.+..+.+.+++++++||++-..|=+
T Consensus 140 ~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 368899999999998851 112 1111222456667777899999999999999555444
No 118
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=45.99 E-value=22 Score=36.97 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCcceEEee---ee-eeccccCCCceeechhHHHHHHHHHHcCCcEEE
Q 009121 116 AAGLKALKLLGVEGVELP---VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 168 (543)
+..|+.||++|++.+... +- .-+-..-.|++..+..|.+.++.++++|+++.+
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 789999999999866310 00 111121236677899999999999999999843
No 119
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=45.46 E-value=30 Score=38.02 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=37.2
Q ss_pred HHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 118 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.|..+|++||+||....- +-.....++-....++-++|.++||+|-||=|.
T Consensus 15 ~l~~irQ~G~~giV~al~----~~p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~ 65 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALH----HIPNGEVWEKEEIRKRKEYIESAGLHWSVVESV 65 (394)
T ss_pred hHHHHhhcCCcceeecCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 477889999999986542 111123345556788899999999999998776
No 120
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=45.40 E-value=1.2e+02 Score=32.77 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccC------CCceeechhHHHHHHHHHHcCCcEEEEEEeecC--CCCCCCCChhch
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKE------AMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL--KQPKIPLPDWVS 187 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~------~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvg--D~~~IpLP~WV~ 187 (543)
.+++++..++|++.|.+-+ +.-|.. ....-.+.-+.+++++++++|+++++.+|+-.| |...++ |..|.
T Consensus 124 ~~die~A~~~g~~~v~i~~--s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~-~~~l~ 200 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFA--SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVP-PSKVA 200 (347)
T ss_pred HHHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCC-HHHHH
Confidence 4667777788999988775 222211 122335677889999999999999988876523 233344 77777
Q ss_pred hhhcc----C-CCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhh
Q 009121 188 QIGES----Q-SSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSF 240 (543)
Q Consensus 188 ~~g~~----~-PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f 240 (543)
+..+. - -.|.+.|--|.-+ |.+ ..++++.+++++
T Consensus 201 ~~~~~~~~~Gad~I~l~DT~G~a~------------------P~~-v~~lv~~l~~~~ 239 (347)
T PLN02746 201 YVAKELYDMGCYEISLGDTIGVGT------------------PGT-VVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHcCCCEEEecCCcCCcC------------------HHH-HHHHHHHHHHhC
Confidence 63211 0 1355555555543 644 456677777654
No 121
>PRK15452 putative protease; Provisional
Probab=45.39 E-value=33 Score=37.95 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeee
Q 009121 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPV 134 (543)
Q Consensus 90 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdV 134 (543)
.+++|||.+|.-. .+ .+-+.+...|+.|+++|||||.|.-
T Consensus 58 ~g~kvyvt~n~i~--~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 58 LGKKFYVVVNIAP--HN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred cCCEEEEEecCcC--CH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 4789999988332 22 2346788889999999999999864
No 122
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=45.32 E-value=62 Score=32.98 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=45.6
Q ss_pred cCcHHHHHHHHHHHHHcCcceEEeeeeeecccc-CCC--ceeechhHHHHHHHHHHcCCcEEEEEEeecC
Q 009121 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEK-EAM--GKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL 175 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p--~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvg 175 (543)
+.+++.+.+.++.+++.|++.|-+-.=++..-+ ..+ ..++-..++++++.+++.|+++ ..|+.
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~ 181 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAY 181 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeC
Confidence 456888999999999999999976543322111 111 2577788999999999999976 45743
No 123
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.07 E-value=2.3e+02 Score=30.13 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=54.7
Q ss_pred cCcHHHHHHHHHHHHHcCc--ceEEeeee--------eec---cccCC--C---ceeec------hhHHHHHHHHHHcCC
Q 009121 109 VNHAKAIAAGLKALKLLGV--EGVELPVW--------WGV---AEKEA--M---GKYNW------SGYLAVAEMVEKIGL 164 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GV--dGV~vdVW--------WGi---VE~~~--p---~~YdW------s~Y~~l~~mv~~~GL 164 (543)
-.+.+.+..-++.+++.|+ |+|.+|.| |.. ++..+ + +.++| --.+++++-+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 3467889999999999875 88888842 111 11011 1 12222 246899999999999
Q ss_pred cEEEEEEee--cCCCCCCCCChhch-hhhccCCCeeeecCCCCc
Q 009121 165 KLHVSLCFH--ALKQPKIPLPDWVS-QIGESQSSIFYTDQSGQQ 205 (543)
Q Consensus 165 Kv~~vmsFH--vgD~~~IpLP~WV~-~~g~~~PDI~ytDr~G~r 205 (543)
|+ ++..| +..++.+.-..+.. +++.+. +++.+|.+|.-
T Consensus 100 kv--~l~v~P~i~~~~~~~~~~~~~~~~~~~~-g~~vk~~~G~~ 140 (340)
T cd06597 100 KV--LLWQIPIIKLRPHPHGQADNDEDYAVAQ-NYLVQRGVGKP 140 (340)
T ss_pred EE--EEEecCccccccccccccchhHHHHHHC-CEEEEcCCCCc
Confidence 99 55554 33222111111111 123333 78999998863
No 124
>PTZ00445 p36-lilke protein; Provisional
Probab=44.78 E-value=62 Score=33.11 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=51.3
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeech------------hHHHHHHHHHHcCCcEEEEEEeecC
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWS------------GYLAVAEMVEKIGLKLHVSLCFHAL 175 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs------------~Y~~l~~mv~~~GLKv~~vmsFHvg 175 (543)
.++..+....=.+.||+.||..|-+|.==-+|...+.|-.++. ..+++++.++++|++| ++-|+ +
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v--~VVTf-S 100 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKI--SVVTF-S 100 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeE--EEEEc-c
Confidence 4566677777788899999999999975566665555555553 4788999999999999 33342 4
Q ss_pred CCCCCC
Q 009121 176 KQPKIP 181 (543)
Q Consensus 176 D~~~Ip 181 (543)
|...||
T Consensus 101 d~~~~~ 106 (219)
T PTZ00445 101 DKELIP 106 (219)
T ss_pred chhhcc
Confidence 555544
No 125
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=44.45 E-value=37 Score=34.19 Aligned_cols=53 Identities=17% Similarity=0.036 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeecccc--CCCc---eeechhHHHHHHHHHHcCCcE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEK--EAMG---KYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~--~~p~---~YdWs~Y~~l~~mv~~~GLKv 166 (543)
.+.+.++++.++|+++|.++.=|+.... -+|. +|-+.+++++++.+++.|.++
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~ 202 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI 202 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 4556667888999999999987665431 1344 445899999999888888766
No 126
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=43.57 E-value=67 Score=32.81 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhcc
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGES 192 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~ 192 (543)
-.+++-++.++++||+||-+.. |+ .+.-.++++.++++||+...+++- +- .+.-+..+.+.
T Consensus 102 ~G~e~f~~~~~~aGvdgviipD-----lp-------~ee~~~~~~~~~~~gl~~i~lv~P------~T-~~eri~~i~~~ 162 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVAD-----LP-------LEESGDLVEAAKKHGVKPIFLVAP------NA-DDERLKQIAEK 162 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECC-----CC-------hHHHHHHHHHHHHCCCcEEEEECC------CC-CHHHHHHHHHh
Confidence 3678889999999999999983 22 245678999999999999555544 22 23444444333
Q ss_pred CCC-eeeecCCCCccccccccccCCcccCCCCC-hhHHHHHHHHHHHHhhcccccCceeEEEeeccCC
Q 009121 193 QSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKT-PIQVYQEFCESFKSSFKPFMGTTITGISMGLGPD 258 (543)
Q Consensus 193 ~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRT-piq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~ 258 (543)
-++ |++....|..- -|+ -.+.-.++++..|+... ..|.||.|=.
T Consensus 163 ~~gfiy~vs~~G~TG---------------~~~~~~~~~~~~i~~lr~~~~-------~pi~vgfGI~ 208 (256)
T TIGR00262 163 SQGFVYLVSRAGVTG---------------ARNRAASALNELVKRLKAYSA-------KPVLVGFGIS 208 (256)
T ss_pred CCCCEEEEECCCCCC---------------CcccCChhHHHHHHHHHhhcC-------CCEEEeCCCC
Confidence 332 45545544442 111 11235566776666532 1577777764
No 127
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=43.41 E-value=97 Score=34.13 Aligned_cols=83 Identities=20% Similarity=0.448 Sum_probs=46.0
Q ss_pred CCCceeec---hhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcc
Q 009121 142 EAMGKYNW---SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 218 (543)
Q Consensus 142 ~~p~~YdW---s~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~p 218 (543)
..++.||| .+-+-+++.|++.|.+. ++.| .+-| |.|...-|.... . ..| ..+|.
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~--f~aF-----SNSP-P~~MT~NG~~~g----~-~~~---~~NLk------- 149 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNI--FEAF-----SNSP-PWWMTKNGSASG----G-DDG---SDNLK------- 149 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT-----EEEE------SSS--GGGSSSSSSB-----S--SS---S-SS--------
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCe--EEEe-----ecCC-CHHHhcCCCCCC----C-Ccc---ccccC-------
Confidence 46899999 66777899999999998 8888 5555 889874443211 1 111 22222
Q ss_pred cCCCCChhHHHHHHHHHHHHhhcccccCceeEEE
Q 009121 219 VLDGKTPIQVYQEFCESFKSSFKPFMGTTITGIS 252 (543)
Q Consensus 219 vl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~ 252 (543)
+- -.+.|.+||....++|.. .+=.|+-|.
T Consensus 150 ---~d-~y~~FA~YLa~Vv~~~~~-~GI~f~~Is 178 (384)
T PF14587_consen 150 ---PD-NYDAFADYLADVVKHYKK-WGINFDYIS 178 (384)
T ss_dssp ---TT--HHHHHHHHHHHHHHHHC-TT--EEEEE
T ss_pred ---hh-HHHHHHHHHHHHHHHHHh-cCCccceeC
Confidence 11 257888888888888844 244666663
No 128
>PRK15108 biotin synthase; Provisional
Probab=43.03 E-value=2.6e+02 Score=29.78 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
+++.+.+..+.+++.|+.-|.+-.=| + .|-.-++.+|.++++.+++.|+++ ++|.
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v--~~s~ 131 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLET--CMTL 131 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEE--EEeC
Confidence 35778888888999999998664333 1 344557899999999999999876 4554
No 129
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=43.01 E-value=1.1e+02 Score=30.92 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=61.0
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhh----cc
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG----ES 192 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g----~~ 192 (543)
.+++..++.|++.|.+-.-...+ .-..++++.+++.|+++++.++- ...++ |..+.+.. +.
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~----------~~~~~~i~~ak~~G~~v~~~~~~----~~~~~-~~~~~~~~~~~~~~ 153 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA----------DVSEQHIGAARKLGMDVVGFLMM----SHMAS-PEELAEQAKLMESY 153 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH----------HHHHHHHHHHHHCCCeEEEEEEe----ccCCC-HHHHHHHHHHHHHc
Confidence 66888889999999886644433 35788999999999999877743 12233 66776532 22
Q ss_pred CCC-eeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhc
Q 009121 193 QSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (543)
Q Consensus 193 ~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~ 241 (543)
.+| |.+.|-.|.- +| +...++.+.+++++.
T Consensus 154 G~d~i~l~DT~G~~------------------~P-~~v~~lv~~l~~~~~ 184 (263)
T cd07943 154 GADCVYVTDSAGAM------------------LP-DDVRERVRALREALD 184 (263)
T ss_pred CCCEEEEcCCCCCc------------------CH-HHHHHHHHHHHHhCC
Confidence 333 5566666644 35 456677888887654
No 130
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=42.64 E-value=34 Score=34.10 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=62.1
Q ss_pred eEEeeee--eeccccCCCc--eeechhHH----HHHHHHHHcCCcEEEEEEee----cCCCCCCCCChhchhhhccCCCe
Q 009121 129 GVELPVW--WGVAEKEAMG--KYNWSGYL----AVAEMVEKIGLKLHVSLCFH----ALKQPKIPLPDWVSQIGESQSSI 196 (543)
Q Consensus 129 GV~vdVW--WGiVE~~~p~--~YdWs~Y~----~l~~mv~~~GLKv~~vmsFH----vgD~~~IpLP~WV~~~g~~~PDI 196 (543)
-+|+++= ||+||- .+. +.-=.-++ ..++-+.+.++++ |+-+| -.+..-.-||.||.++ -+||+
T Consensus 38 ~~Mle~A~k~glve~-rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~i--ivDtH~~IkTP~GylpgLP~~Vl~~--l~pd~ 112 (189)
T COG2019 38 DLMLEIAKKKGLVEH-RDEMRKLPLENQRELQAEAAKRIAEMALEI--IVDTHATIKTPAGYLPGLPSWVLEE--LNPDV 112 (189)
T ss_pred HHHHHHHHHhCCccc-HHHHhcCCHHHHHHHHHHHHHHHHHhhhce--EEeccceecCCCccCCCCcHHHHHh--cCCCE
Confidence 3566665 999995 321 11122222 2344455666665 99999 3344556699999964 56776
Q ss_pred eeecCC------CCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCceeEE
Q 009121 197 FYTDQS------GQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGI 251 (543)
Q Consensus 197 ~ytDr~------G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI 251 (543)
+..=+. .+|-++ -+ -.....+-.-++.-.++-|.++-+.+-+.++++.=|
T Consensus 113 ivllEaDp~~Il~RR~~D-~~----r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV 168 (189)
T COG2019 113 IVLLEADPEEILERRLRD-SR----RDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIV 168 (189)
T ss_pred EEEEeCCHHHHHHHHhcc-cc----cccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 654332 111110 00 000111122566677777777777777778866555
No 131
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=41.94 E-value=2.5e+02 Score=29.18 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=81.8
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeeee----eec--------ccc-------CCCceeechhHHHHHHHHHHcCCcE
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVW----WGV--------AEK-------EAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVW----WGi--------VE~-------~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
...+-..+.+++.+..|...+++...+-.= |-+ .+. ...+.|.=+-++++++.|++.|+.|
T Consensus 9 aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 9 SRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred cccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 446778899999999999999988765433 422 221 1245788999999999999999999
Q ss_pred EEEEEe--e----------cCCCCCCCCChhchhhhcc---CCCe------eeecCCCCccccccccccCCcccCCCCCh
Q 009121 167 HVSLCF--H----------ALKQPKIPLPDWVSQIGES---QSSI------FYTDQSGQQFKGCLSLAVDDLPVLDGKTP 225 (543)
Q Consensus 167 ~~vmsF--H----------vgD~~~IpLP~WV~~~g~~---~PDI------~ytDr~G~rn~E~LSl~~D~~pvl~GRTp 225 (543)
+|-+-+ | .+..|....+.... .+.- +|+. ++.+=..-...+|+-+|.|+++.. .++
T Consensus 89 iPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~-~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~~~--~~~ 165 (303)
T cd02742 89 IPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDV-FDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAHFK--QDR 165 (303)
T ss_pred EEeccchHHHHHHHHhCHHhccCccccCCCCCC-CCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecCCC--CCH
Confidence 776654 3 01111111110000 0001 1110 000000111367999999999754 466
Q ss_pred hHHHHHHHHHHHHhhccc
Q 009121 226 IQVYQEFCESFKSSFKPF 243 (543)
Q Consensus 226 iq~Y~dfm~sF~~~f~~~ 243 (543)
.+.|..|++...+.....
T Consensus 166 ~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 166 KHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 788888888877777664
No 132
>PRK07094 biotin synthase; Provisional
Probab=41.34 E-value=44 Score=34.41 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCcceEEeeee---eeccccCCCceeechhHHHHHHHHHHcCCcEEE
Q 009121 116 AAGLKALKLLGVEGVELPVW---WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 168 (543)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...++.+.+.++.++++|+++..
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecc
Confidence 56788999999999987541 122222223 57899999999999999998743
No 133
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=41.27 E-value=2.6e+02 Score=29.63 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=77.6
Q ss_pred cCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHH-HcCCcEEEEEEeecCCCCCCCCChhch
Q 009121 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVE-KIGLKLHVSLCFHALKQPKIPLPDWVS 187 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~-~~GLKv~~vmsFHvgD~~~IpLP~WV~ 187 (543)
+.+++.+++|.+..|++||+|-.+.--|- .+. .-..+-++++. ...+++--.||. +|-+ |-.
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf--~gk-------~lLe~p~~~~l~~~~~d~pFcl~W-----AN~~---w~~ 116 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHYWF--NGK-------RLLEKPLENLLASKEPDFPFCLCW-----ANEN---WTR 116 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeeec--CCc-------hHHHHHHHHHHhcCCCCCcEEEEE-----CCCh---hhh
Confidence 57899999999999999999999987776 220 01222333333 334444335555 2222 311
Q ss_pred hhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCCCCCCC
Q 009121 188 QIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHH 267 (543)
Q Consensus 188 ~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp 267 (543)
.=...+.+++..-+.+ ..+.+.++++-...-|.| |.|-
T Consensus 117 ~w~g~~~~~l~~q~y~---------------------~~~d~~~~~~~l~~~F~D---------------------~rYi 154 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYS---------------------GEDDWKEHFRYLLPYFKD---------------------PRYI 154 (345)
T ss_pred ccCCCCccccccccCC---------------------chhHHHHHHHHHHHHhCC---------------------CCce
Confidence 1001122333333222 224466777777766666 6677
Q ss_pred CCCCCCcC--CCCcccccccHHHHHHHHHHHHHcCCCC
Q 009121 268 RLAKSSKI--PGVGEFQCCDRNMLNLLQQHAEANGNPL 303 (543)
Q Consensus 268 ~~~g~W~~--PGiGEFQCYDky~~~~lr~~a~~~gn~~ 303 (543)
..+|+=.+ -..+.|.+. +.+++.+|+.|+++|-+.
T Consensus 155 kVdGKPv~~Iy~p~~~pd~-~~~~~~wr~~a~~~G~~g 191 (345)
T PF14307_consen 155 KVDGKPVFLIYRPGDIPDI-KEMIERWREEAKEAGLPG 191 (345)
T ss_pred eECCEEEEEEECcccccCH-HHHHHHHHHHHHHcCCCc
Confidence 77764333 222444444 567789999999987663
No 134
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.07 E-value=1.2e+02 Score=31.44 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=54.8
Q ss_pred HHHHHHHHcCcceEEeeee---eecccc-CCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhcc
Q 009121 117 AGLKALKLLGVEGVELPVW---WGVAEK-EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGES 192 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVW---WGiVE~-~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~ 192 (543)
+++++.+++|++.|.+-+- +-+-+. ..-....++-+.++++.+++.|+++++.++. .+....++ |..+.+..+.
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~r~~-~~~~~~~~~~ 155 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGMRDS-PDYVFQLVDF 155 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCCcCC-HHHHHHHHHH
Confidence 4788899999999888762 111111 0112234666788899999999999888874 55444454 6777763211
Q ss_pred ----CC-CeeeecCCCCcc
Q 009121 193 ----QS-SIFYTDQSGQQF 206 (543)
Q Consensus 193 ----~P-DI~ytDr~G~rn 206 (543)
-. .|.+.|-.|.-.
T Consensus 156 ~~~~G~~~i~l~DT~G~~~ 174 (280)
T cd07945 156 LSDLPIKRIMLPDTLGILS 174 (280)
T ss_pred HHHcCCCEEEecCCCCCCC
Confidence 11 355666665553
No 135
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=41.04 E-value=63 Score=33.66 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCce----eechhHHHHHHHHHHcCCcE--EEEEEee
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGK----YNWSGYLAVAEMVEKIGLKL--HVSLCFH 173 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~----YdWs~Y~~l~~mv~~~GLKv--~~vmsFH 173 (543)
+.+|++||..+||.|.+|.. |.=|- =-+. +.=.-|.+.+.++++.|++| ++++..|
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~v-Ik~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDV-IKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHH-HHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 67899999999999999975 22111 0111 22346999999999999999 5566666
No 136
>PRK07360 FO synthase subunit 2; Reviewed
Probab=40.42 E-value=29 Score=37.01 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCcceEEeeeeeeccc---------cCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 115 IAAGLKALKLLGVEGVELPVWWGVAE---------KEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVWWGiVE---------~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+..|++||++|++.+. +.-. .-.|++-.+..|.+.++.+++.||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 46789999999999994 2111 11477778888899999999999999655555
No 137
>PRK08508 biotin synthase; Provisional
Probab=40.26 E-value=35 Score=34.93 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCc-------eeechhHHHHHHHHHHcCCcEE
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMG-------KYNWSGYLAVAEMVEKIGLKLH 167 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mv~~~GLKv~ 167 (543)
+.+|++||++|++.+.++ +|. ++. --+|.-..+.++.+++.|+++-
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 154 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLC 154 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence 778999999999999985 554 321 2467777888889999999873
No 138
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=40.10 E-value=34 Score=35.31 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCcceEE-ee--ee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEEE
Q 009121 115 IAAGLKALKLLGVEGVE-LP--VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~-vd--VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 170 (543)
.+..|++||++|++.+. +. .. -.+...-.|++..+..+.+.++.+++.|+++-.-|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 47889999999998774 11 11 11112223778899999999999999999984333
No 139
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=39.76 E-value=36 Score=41.01 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCcceEEe-eee-eecc
Q 009121 116 AAGLKALKLLGVEGVEL-PVW-WGVA 139 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~v-dVW-WGiV 139 (543)
-.-|+.||++||..|++ +|+ ++-|
T Consensus 289 i~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 289 VQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 35688999999999985 666 6654
No 140
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=39.51 E-value=2.1e+02 Score=28.00 Aligned_cols=106 Identities=12% Similarity=0.256 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccC------CCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKE------AMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~------~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
+.+.++..+++++..|++.|.+-+= .-|.. ...+...+-..++++.+++.|+++ .+++ -|....+ |.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~--~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~--~~~~~~~-~~ 137 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFIS--VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGC--EDASRTD-PE 137 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEE--TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEE--TTTGGSS-HH
T ss_pred hHHHHHHHHHhhHhccCCEEEecCc--ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCc--ccccccc-HH
Confidence 4567888899999999999887543 21211 112233667889999999999999 3333 3333333 56
Q ss_pred hchhh----hccCCC-eeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcc
Q 009121 185 WVSQI----GESQSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP 242 (543)
Q Consensus 185 WV~~~----g~~~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~ 242 (543)
.+.+. .+..+| |.+.|-.|.-. | ..+.++.+.+++++.+
T Consensus 138 ~~~~~~~~~~~~g~~~i~l~Dt~G~~~------------------P-~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 138 ELLELAEALAEAGADIIYLADTVGIMT------------------P-EDVAELVRALREALPD 181 (237)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTS-S-------------------H-HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCeEEEeeCccCCcC------------------H-HHHHHHHHHHHHhccC
Confidence 66553 233455 66777777664 4 4566888999988764
No 141
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=39.03 E-value=1.3e+02 Score=32.27 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCcceEEe--eeeeecccc--CCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhh
Q 009121 115 IAAGLKALKLLGVEGVEL--PVWWGVAEK--EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG 190 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~v--dVWWGiVE~--~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g 190 (543)
...++++++++|++.|.+ .++-..++. .......+.-..+.++.+++.|+++++.+. |....+ |..+.+..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e----da~r~~-~~~l~~~~ 147 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE----DATRTD-IDFLIKVF 147 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe----ecCCCC-HHHHHHHH
Confidence 357788899999999888 333333332 112344577788999999999999854432 333333 77777632
Q ss_pred ----ccCCC-eeeecCCCCc
Q 009121 191 ----ESQSS-IFYTDQSGQQ 205 (543)
Q Consensus 191 ----~~~PD-I~ytDr~G~r 205 (543)
+.-+| |.+.|-.|.-
T Consensus 148 ~~~~~~g~~~i~l~DT~G~~ 167 (363)
T TIGR02090 148 KRAEEAGADRINIADTVGVL 167 (363)
T ss_pred HHHHhCCCCEEEEeCCCCcc
Confidence 22223 6666666644
No 142
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.94 E-value=3e+02 Score=26.97 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCcceEEeeeeeecccc----CCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhh--
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEK----EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQI-- 189 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~-- 189 (543)
..+++.++++|++.|.+-.=-...-. .....-+++-..+.++.+++.|+++++.++. +.. | +.-|..+.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-~~~-~-~~~~~~l~~~~~ 153 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED-AFG-C-KTDPEYVLEVAK 153 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe-ecC-C-CCCHHHHHHHHH
Confidence 67899999999999998774221000 0112236777889999999999999777743 111 1 1234444442
Q ss_pred --hccCCC-eeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhc
Q 009121 190 --GESQSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (543)
Q Consensus 190 --g~~~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~ 241 (543)
.+.-+| |.+.|-.|.- || +.+.++++.+++.+.
T Consensus 154 ~~~~~g~~~i~l~Dt~G~~------------------~P-~~v~~li~~l~~~~~ 189 (265)
T cd03174 154 ALEEAGADEISLKDTVGLA------------------TP-EEVAELVKALREALP 189 (265)
T ss_pred HHHHcCCCEEEechhcCCc------------------CH-HHHHHHHHHHHHhCC
Confidence 223344 4444554432 34 556777777777654
No 143
>PRK08508 biotin synthase; Provisional
Probab=38.93 E-value=2.4e+02 Score=28.91 Aligned_cols=55 Identities=22% Similarity=0.156 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHcCcceEEe-eeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEE
Q 009121 111 HAKAIAAGLKALKLLGVEGVEL-PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLC 171 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 171 (543)
.++.+.+..+.+++.|+..+.+ +-+= ++...++.+|.++++.+++.++++.+..|
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i~~s 96 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHLIAC 96 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEEEec
Confidence 4677888888888999988865 2111 12234889999999999998877654444
No 144
>PRK14706 glycogen branching enzyme; Provisional
Probab=38.63 E-value=75 Score=36.81 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=40.4
Q ss_pred cCcHHHHHHHH-HHHHHcCcceEEeeeeeeccccCCCceeechh-----------------HHHHHHHHHHcCCcEEEEE
Q 009121 109 VNHAKAIAAGL-KALKLLGVEGVELPVWWGVAEKEAMGKYNWSG-----------------YLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 109 ~~~~~~~~~~L-~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKv~~vm 170 (543)
+-.-+.+...| ..||++||+.|.+=- +.| -|...+|-+ ++++++.++++||+| ||
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmP---v~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~V--il 235 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLG---VME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGV--IL 235 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccc---hhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEE--EE
Confidence 34456677776 689999999998632 344 233344533 789999999999999 55
Q ss_pred Ee
Q 009121 171 CF 172 (543)
Q Consensus 171 sF 172 (543)
-+
T Consensus 236 D~ 237 (639)
T PRK14706 236 DW 237 (639)
T ss_pred Ee
Confidence 54
No 145
>PRK09505 malS alpha-amylase; Reviewed
Probab=38.61 E-value=67 Score=37.64 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHcCcceEEee-eeeeccc---c--------CCCcee-------------echhHHHHHHHHHHcCCc
Q 009121 111 HAKAIAAGLKALKLLGVEGVELP-VWWGVAE---K--------EAMGKY-------------NWSGYLAVAEMVEKIGLK 165 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vd-VWWGiVE---~--------~~p~~Y-------------dWs~Y~~l~~mv~~~GLK 165 (543)
+-+.|...|..||++||++|-+. ++=.+-. . .+...| ....+++|++.+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 46789999999999999999764 2211100 0 000111 345799999999999999
Q ss_pred EEEEEEe
Q 009121 166 LHVSLCF 172 (543)
Q Consensus 166 v~~vmsF 172 (543)
| ||-+
T Consensus 308 V--ilD~ 312 (683)
T PRK09505 308 I--LFDV 312 (683)
T ss_pred E--EEEE
Confidence 9 4443
No 146
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=38.31 E-value=65 Score=33.41 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHHHHHHHH---HcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee----------cCCCCCCC
Q 009121 115 IAAGLKALK---LLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH----------ALKQPKIP 181 (543)
Q Consensus 115 ~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH----------vgD~~~Ip 181 (543)
++.++.+|| ++|++.+..-. -||-+.|.+..+.+++.|+++-++-+.= .-.-|.|.
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~ 215 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTK 215 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCC
Confidence 445555554 48999876543 4788899999999999998875444332 22458899
Q ss_pred CChhchhhhc
Q 009121 182 LPDWVSQIGE 191 (543)
Q Consensus 182 LP~WV~~~g~ 191 (543)
+|.||.+.-+
T Consensus 216 vP~~l~~~l~ 225 (281)
T TIGR00677 216 IPQEIMSRLE 225 (281)
T ss_pred CCHHHHHHHH
Confidence 9999998643
No 147
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=37.63 E-value=68 Score=33.06 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEE
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 170 (543)
..+++-|+..|++|++.|++.. +--...-+-..++++++++.|||+.+=+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~--------G~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISD--------GSMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcC--------CccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 6788899999999999998853 2223345667889999999999995443
No 148
>PRK05402 glycogen branching enzyme; Provisional
Probab=37.16 E-value=78 Score=37.00 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=39.3
Q ss_pred cCcHHHHHHHH-HHHHHcCcceEEeee-e-------eec-------cccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 109 VNHAKAIAAGL-KALKLLGVEGVELPV-W-------WGV-------AEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 109 ~~~~~~~~~~L-~~LK~~GVdGV~vdV-W-------WGi-------VE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.-.-+.+...| ..||++||+.|.+-= + ||- +++ .=| .=..+++|++.|++.||+| ||-+
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~V--ilD~ 335 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGV--ILDW 335 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEE--EEEE
Confidence 33456777775 999999999997643 1 331 111 000 0124899999999999999 6665
No 149
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=37.08 E-value=39 Score=35.75 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCcceEE-e--eee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 115 IAAGLKALKLLGVEGVE-L--PVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~-v--dVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+..|++||++|++.+. . ... --+...-.|++..|.-+.+.++.++++|+++-.-|=+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 46679999999998765 1 111 1122222367778889999999999999998554444
No 150
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=37.01 E-value=1.5e+02 Score=31.13 Aligned_cols=108 Identities=13% Similarity=0.054 Sum_probs=62.3
Q ss_pred HHHHHHHHcCcc-eEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee--cCCCCC--CCCChhchhhhc
Q 009121 117 AGLKALKLLGVE-GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH--ALKQPK--IPLPDWVSQIGE 191 (543)
Q Consensus 117 ~~L~~LK~~GVd-GV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~--IpLP~WV~~~g~ 191 (543)
.-++.|+++|+. .|.++. ..|... .....+.++.++++|+.+..-.-.. +.|+.. ..|-.|+.+.|-
T Consensus 188 ell~~L~~~g~~v~i~l~~-------~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv 259 (321)
T TIGR03822 188 ALIAALKTSGKTVYVALHA-------NHAREL-TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRI 259 (321)
T ss_pred HHHHHHHHcCCcEEEEecC-------CChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 445567777743 233332 223333 4677788888888888775433332 445432 234455554433
Q ss_pred cCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccC
Q 009121 192 SQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT 246 (543)
Q Consensus 192 ~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~ 246 (543)
.---++..|..+... +-|++.+.+.++|+..+.....|..-
T Consensus 260 ~pyyl~~~~p~~g~~--------------~f~~~~~~~~~i~~~l~~~~~g~~~p 300 (321)
T TIGR03822 260 KPYYLHHLDLAPGTA--------------HFRVTIEEGQALVRALRGRISGLAQP 300 (321)
T ss_pred eeEEEEecCCCCCcc--------------cccCcHHHHHHHHHHHHHhCCCCcce
Confidence 322344445443221 22578999999999999999988543
No 151
>PRK08445 hypothetical protein; Provisional
Probab=36.81 E-value=46 Score=35.46 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCcceEE---eeee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 115 IAAGLKALKLLGVEGVE---LPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~---vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+..|++||++|++-+. +... -.+-+.-.|+.-.-..|.+..+.++++||++-.-|=|
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 37899999999999553 3322 2222333366667777799999999999999666555
No 152
>PLN02960 alpha-amylase
Probab=36.48 E-value=74 Score=38.52 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=40.3
Q ss_pred CcHHHHH-HHHHHHHHcCcceEEeeeeeeccccCCCceeech-----------------hHHHHHHHHHHcCCcEEEEEE
Q 009121 110 NHAKAIA-AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWS-----------------GYLAVAEMVEKIGLKLHVSLC 171 (543)
Q Consensus 110 ~~~~~~~-~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~vms 171 (543)
-.-.++. ..|..||++||+.|.+- .+.| -|+...|- .+++|++.|++.||+| ||-
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e--~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--ILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLI---GVQE--HKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--FLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEC---Cccc--CCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--EEE
Confidence 3455665 55999999999999874 2334 23333343 3899999999999999 766
Q ss_pred e
Q 009121 172 F 172 (543)
Q Consensus 172 F 172 (543)
+
T Consensus 486 v 486 (897)
T PLN02960 486 I 486 (897)
T ss_pred e
Confidence 5
No 153
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=36.39 E-value=80 Score=37.76 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=54.3
Q ss_pred CccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEE--EEEEeecCCCCCCCCCh
Q 009121 107 NTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH--VSLCFHALKQPKIPLPD 184 (543)
Q Consensus 107 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~--~vmsFHvgD~~~IpLP~ 184 (543)
+...++++++++|+.||++|++-|++- +.=|. .+..++|-+.||=|. +-+..|... ..-...+
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~~~ydLcDelGllV~~Ea~~~~~~~~-~~~~~~k 379 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------EEFYDLCDELGLLVIDEAMIETHGMP-DDPEWRK 379 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------HHHHHHHHHhCcEEEEecchhhcCCC-CCcchhH
Confidence 466788999999999999999999875 55553 467789999999982 333444222 2233445
Q ss_pred hchhh-------hccCCCeeee
Q 009121 185 WVSQI-------GESQSSIFYT 199 (543)
Q Consensus 185 WV~~~-------g~~~PDI~yt 199 (543)
|+.+. .+.||.|+.=
T Consensus 380 ~~~~~i~~mver~knHPSIiiW 401 (808)
T COG3250 380 EVSEEVRRMVERDRNHPSIIIW 401 (808)
T ss_pred HHHHHHHHHHHhccCCCcEEEE
Confidence 65552 4778887664
No 154
>PRK06256 biotin synthase; Validated
Probab=36.31 E-value=37 Score=35.19 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceee-------chhHHHHHHHHHHcCCcEEEEE
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN-------WSGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------Ws~Y~~l~~mv~~~GLKv~~vm 170 (543)
+..++.||++|++.|.+. +|. .+..|+ |..+.+.++.++++|+++..-+
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCe
No 155
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=35.58 E-value=2.8e+02 Score=29.06 Aligned_cols=117 Identities=14% Similarity=0.251 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHcC--cceEEeeeeeeccccCCCc-----ee-----echhHHHHHHHHHHcCCcEEEEEEee--cCC
Q 009121 111 HAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMG-----KY-----NWSGYLAVAEMVEKIGLKLHVSLCFH--ALK 176 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~-----~Y-----dWs~Y~~l~~mv~~~GLKv~~vmsFH--vgD 176 (543)
..+.+..-.+.+++.| +|.|.+|-|=...+. .-+ .| .|.-.+++++-+++.|+|+ |+..| |..
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~-~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~--~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRET-SFGDRLWWNWEWDPERYPGLDELIEELKARGIRV--LTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccc-cccceeeeeeEEChhhCCCHHHHHHHHHHCCCEE--EEEecCceec
Confidence 6678888999999885 588889876222221 112 13 2356789999999999999 66666 433
Q ss_pred CCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHH
Q 009121 177 QPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (543)
Q Consensus 177 ~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF 236 (543)
+. +.. -+++.++ +.++++.+|....--...+.--.|-+..-...+.|.+.++.+
T Consensus 98 ~~----~~~-y~~~~~~-g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 98 DG----PLY-YEEAKDA-GYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred CC----chh-HHHHHHC-CeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 21 221 2455554 889999988642111111111223232222455666665554
No 156
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=35.09 E-value=51 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHHHcCcceEEeeeeeeccccCC---CceeechhHHHHHHHHHHcCCcE
Q 009121 119 LKALKLLGVEGVELPVWWGVAEKEA---MGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 119 L~~LK~~GVdGV~vdVWWGiVE~~~---p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
+..++++|++|||+|-+ .+.+ ...+++....+.++.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 45678999999999976 3333 34566778888999999999987
No 157
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=34.77 E-value=83 Score=28.48 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHc-CcceEEeeeeeeccc-cCCCceeechhHHHH-HHHHHHcCCcEEEEEEee
Q 009121 113 KAIAAGLKALKLL-GVEGVELPVWWGVAE-KEAMGKYNWSGYLAV-AEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 113 ~~~~~~L~~LK~~-GVdGV~vdVWWGiVE-~~~p~~YdWs~Y~~l-~~mv~~~GLKv~~vmsFH 173 (543)
+.+-+++++||.. |.|.|.+.-= -+.+ |+=| ....++. -..+++.|+|| ||++|
T Consensus 42 rlvpn~~k~lk~~egaeaihfasC-ml~~~PkCp----y~~~eei~Kk~ie~~~i~V--v~gTH 98 (101)
T COG5561 42 RLVPNQIKQLKGKEGAEAIHFASC-MLAFKPKCP----YASAEEIAKKEIEKMGIKV--VMGTH 98 (101)
T ss_pred chhHHHHHHHhhccccceeeeeee-eeccCCCCC----ccCHHHHHHHHHHHhCCcE--Eeecc
Confidence 5678899999965 7899887543 2334 3222 1223555 45678999999 99999
No 158
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=34.64 E-value=70 Score=31.25 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEE
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 168 (543)
...++.-|+..+++|.+||++.. +..... +.+-.+++-+.++++||++..
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEEEe
Confidence 35688999999999999999987 333222 222389999999999999933
No 159
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=34.60 E-value=9.3 Score=39.97 Aligned_cols=31 Identities=32% Similarity=0.700 Sum_probs=27.5
Q ss_pred ceeEEeecCcccCCCC-ChhhHHHHHHHhccC
Q 009121 483 DLFTYQRMGAYFFSPE-HFPSFTKFVRNLNQL 513 (543)
Q Consensus 483 ~~FTylRm~~~lf~~~-n~~~F~~FV~~m~~~ 513 (543)
.=||++|||..++.|. +|..+..|++.+...
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek~ 127 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEKV 127 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhee
Confidence 6699999999999995 699999999998754
No 160
>PRK02227 hypothetical protein; Provisional
Probab=34.04 E-value=51 Score=34.03 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=36.9
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCC---CceeechhHHHHHHHHHHcCCcE
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEA---MGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~---p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
.-+..++++|++|+|+|-+ ++.+ -..+++....+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567789999999999965 3333 34567888999999999999987
No 161
>PRK15108 biotin synthase; Provisional
Probab=33.34 E-value=67 Score=34.13 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCcee-------echhHHHHHHHHHHcCCcE
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKY-------NWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------dWs~Y~~l~~mv~~~GLKv 166 (543)
+..|++||++|+|.+.++. |. .|+.| +|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 7889999999999888753 32 22222 5666777777888889876
No 162
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=32.86 E-value=71 Score=31.31 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+...+..+++.+.++|+++|.+-+.++..+ ..+......++.++++++|+++ |+-.|
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~--iie~~ 130 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPL--IAWMY 130 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCE--EEEEe
Confidence 345667778899999999998888877443 3556778888899999999998 54444
No 163
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=32.57 E-value=3.6e+02 Score=28.61 Aligned_cols=124 Identities=12% Similarity=0.181 Sum_probs=78.2
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeee----eeecc--------cc--------CCCceeechhHHHHHHHHHHcCCc
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPV----WWGVA--------EK--------EAMGKYNWSGYLAVAEMVEKIGLK 165 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdV----WWGiV--------E~--------~~p~~YdWs~Y~~l~~mv~~~GLK 165 (543)
...+-..+.|++.+..|...+.+..++-. -|-+- +. ...+.|.=+-+++|++.|++.|+.
T Consensus 11 aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 11 ARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred cCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 44577889999999999999988776533 24321 11 112568888899999999999999
Q ss_pred EEEEEEeecCCCCCCCCChhchhhhccCCCeee--------------------ecC-------------CCCcccccccc
Q 009121 166 LHVSLCFHALKQPKIPLPDWVSQIGESQSSIFY--------------------TDQ-------------SGQQFKGCLSL 212 (543)
Q Consensus 166 v~~vmsFHvgD~~~IpLP~WV~~~g~~~PDI~y--------------------tDr-------------~G~rn~E~LSl 212 (543)
|+|-+-+ |.=.....+.+|++.- ++. ..--..+|+-+
T Consensus 91 vIPEiD~----------PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHi 160 (329)
T cd06568 91 VVPEIDM----------PGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHI 160 (329)
T ss_pred EEEecCC----------cHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9776554 2111111111111110 000 01113479999
Q ss_pred ccCCcccCCCCChhHHHHHHHHHHHHhhccc
Q 009121 213 AVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243 (543)
Q Consensus 213 ~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~ 243 (543)
|.|+++. +..+.|..|++...+.+.+.
T Consensus 161 GgDE~~~----~~~~~~~~f~~~~~~~v~~~ 187 (329)
T cd06568 161 GGDEAHS----TPHDDYAYFVNRVRAIVAKY 187 (329)
T ss_pred ecccCCC----CchHHHHHHHHHHHHHHHHC
Confidence 9999974 34578888888888777664
No 164
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=32.35 E-value=1.8e+02 Score=29.84 Aligned_cols=83 Identities=16% Similarity=0.057 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCcceEEeeeeeecccc------CCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhh
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEK------EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQI 189 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~------~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~ 189 (543)
.++++..+++|++.|.+-+ +.-|. ...-...+.-..++++.+++.|++|.+.+.- .-.. .|..|.+.
T Consensus 74 ~~di~~a~~~g~~~i~i~~--~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed----a~r~-~~~~l~~~ 146 (262)
T cd07948 74 MDDARIAVETGVDGVDLVF--GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED----SFRS-DLVDLLRV 146 (262)
T ss_pred HHHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----eCCC-CHHHHHHH
Confidence 3467778889999988754 11110 0112335777888999999999999666643 1122 26777653
Q ss_pred h----ccCCC-eeeecCCCCc
Q 009121 190 G----ESQSS-IFYTDQSGQQ 205 (543)
Q Consensus 190 g----~~~PD-I~ytDr~G~r 205 (543)
. +.-+| |.+.|-.|.-
T Consensus 147 ~~~~~~~g~~~i~l~Dt~G~~ 167 (262)
T cd07948 147 YRAVDKLGVNRVGIADTVGIA 167 (262)
T ss_pred HHHHHHcCCCEEEECCcCCCC
Confidence 2 22233 4555655544
No 165
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=32.33 E-value=69 Score=32.25 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=37.2
Q ss_pred hHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 009121 403 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 461 (543)
Q Consensus 403 Y~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL 461 (543)
...+++.|-+.|+...++|+.-.--...---..--++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 66777777888999999999754322110112224689999999999999999999974
No 166
>PRK12677 xylose isomerase; Provisional
Probab=32.26 E-value=75 Score=34.45 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCcceEEeee---e-eeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 114 AIAAGLKALKLLGVEGVELPV---W-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdV---W-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
.++.-+.+++++|+++|++.. + |+.-.. ..+ ...+++-++++++||+|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v 83 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVV 83 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCee
Confidence 477889999999999998841 2 332221 011 24788999999999998
No 167
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=31.63 E-value=1.3e+02 Score=36.14 Aligned_cols=58 Identities=26% Similarity=0.199 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee-------------echhHHHHHHHHHHcCCcEEEEEEe
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
-+.+.+.|..|+.+||+.|-+.--+-... .+..-| ....+++|++.++++||+| ||-+
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~-gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~v--IlDi 85 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVP-GSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGL--IVDI 85 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCC-CCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 46799999999999999997665443221 122233 3778999999999999999 5554
No 168
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=31.45 E-value=93 Score=30.79 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+.+++.+.+++||+ ++|.|-+-.=||.=....| ...-+++++.+-+.|..+ |++-|
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H 213 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHH 213 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCC
Confidence 36789999999998 7999999999997332223 223356666666689888 99988
No 169
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.43 E-value=1.7e+02 Score=30.54 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCcceEEee-eeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCC-------CCChh
Q 009121 114 AIAAGLKALKLLGVEGVELP-VWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKI-------PLPDW 185 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vd-VWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~I-------pLP~W 185 (543)
+.+.--+..++.|+.||-+- .-++.-.. .+. |..+++.|.++|+-|+. |.|..+.- ..|.=
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~~~~~-~~~------~~pi~~~a~~~gvpv~i----htG~~~~~~~~~~~~~~p~~ 182 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQGFYPD-DPR------LYPIYEAAEELGVPVVI----HTGAGPGGAGLEKGHSDPLY 182 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccCCCCC-ChH------HHHHHHHHHHcCCCEEE----EeCCCCCCcccccCCCCchH
Confidence 44444455567899999884 43665553 222 89999999999999844 96654442 34555
Q ss_pred chhhhccCCCeeee
Q 009121 186 VSQIGESQSSIFYT 199 (543)
Q Consensus 186 V~~~g~~~PDI~yt 199 (543)
+.++.++.|++-+.
T Consensus 183 ~~~va~~fP~l~IV 196 (293)
T COG2159 183 LDDVARKFPELKIV 196 (293)
T ss_pred HHHHHHHCCCCcEE
Confidence 55567888886443
No 170
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=30.90 E-value=35 Score=33.85 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=34.7
Q ss_pred eechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCCCeeeecCCCCccccccccccCCcccCCCCChh
Q 009121 147 YNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPI 226 (543)
Q Consensus 147 YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpi 226 (543)
|+|+.|+.+++.++++||+|.+ +-+|.-+.....+. .+---++..+. .|- .+.+ +|-
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA-----------~N~pr~~~~~V~~~-G~~~L~~~~r~---~l~---~~~~-----~~~ 142 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIA-----------LNVPRELVRKVARE-GLDSLSEEERA---WLP---PDIP-----LPD 142 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEE-----------EE--HHHHHHHHT----------T------------SSS-----S-H
T ss_pred CchHHHHHHHHHHHHCCCCEEE-----------ecCCHHHHHHHHHh-cccchhhhhHh---hcC---CCCC-----CCh
Confidence 6899999999999999999833 33677665432221 11111111111 111 1111 357
Q ss_pred HHHHHHHHHHHHhhcc
Q 009121 227 QVYQEFCESFKSSFKP 242 (543)
Q Consensus 227 q~Y~dfm~sF~~~f~~ 242 (543)
+.|++++......-..
T Consensus 143 ~~~~~~~~~~~~~h~~ 158 (213)
T PF04187_consen 143 PAYRARLQEIFAGHCG 158 (213)
T ss_dssp HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhccC
Confidence 8999998887766443
No 171
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.88 E-value=55 Score=30.03 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeee---ecccc-CCCceeechhHHHHHHHHHHcCCcEEEEEEeec
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWW---GVAEK-EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWW---GiVE~-~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHv 174 (543)
.+.++..++..+.+|+..|.+...+ ..-.. +..-..--..++++.++++++|+++ .+-.|.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI--ALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE--EEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE--EEeccc
Confidence 4688899999999999999988552 11111 1112223347788999999999776 777763
No 172
>PRK05926 hypothetical protein; Provisional
Probab=30.80 E-value=60 Score=35.05 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCcceEEeeee----eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 115 IAAGLKALKLLGVEGVELPVW----WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVW----WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+..|++||++|++-+...-+ .-+-+.-.|++-....+.+..++++++||++-.-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 577799999999987764311 1112223467777788899999999999999777777
No 173
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=30.67 E-value=80 Score=33.82 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=48.6
Q ss_pred ceEEEeeeceeeeC-----CC----ccCcHHHHH-----------HHHHHHHHcCcce-EEeeee--e-eccccCCCcee
Q 009121 92 VRLFVGLPLDTVSD-----AN----TVNHAKAIA-----------AGLKALKLLGVEG-VELPVW--W-GVAEKEAMGKY 147 (543)
Q Consensus 92 vpv~VMlPLd~V~~-----~~----~~~~~~~~~-----------~~L~~LK~~GVdG-V~vdVW--W-GiVE~~~p~~Y 147 (543)
+-..+..|++++.. .+ -..+|+.+. .-+++..++|+++ |.+..+ | +++. |.+|
T Consensus 173 i~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~ls---p~~f 249 (378)
T cd03308 173 AGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLR---PKQF 249 (378)
T ss_pred cceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccC---HHHH
Confidence 44588899995542 11 122444443 3445566789998 777665 4 3444 5666
Q ss_pred e---chhHHHHHHHHHHcCCcEEEEE
Q 009121 148 N---WSGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 148 d---Ws~Y~~l~~mv~~~GLKv~~vm 170 (543)
+ |-+++++++-+++.|.++ |+
T Consensus 250 ~ef~~P~~k~i~~~i~~~g~~~--il 273 (378)
T cd03308 250 EKFYWPSFKKVVEGLAARGQRI--FL 273 (378)
T ss_pred HHHHHHHHHHHHHHHHhcCCCE--EE
Confidence 5 999999999999988765 55
No 174
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=30.54 E-value=1.3e+02 Score=33.53 Aligned_cols=51 Identities=8% Similarity=0.078 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+.++.++++..++||+.|.+-.--..++ -.++.++.++++|+++++.+|+
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 35678899999999999988876543332 3778999999999999998888
No 175
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=30.10 E-value=78 Score=32.92 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=46.7
Q ss_pred HHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHc-CCcEEEEEEeecCCCCCCCCChhchhhhccC
Q 009121 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKI-GLKLHVSLCFHALKQPKIPLPDWVSQIGESQ 193 (543)
Q Consensus 118 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~-GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~ 193 (543)
-++++.++|+++|.+.-=|+.+ -+|.+|+ +-+++++++-+++. |-. +|+-|| ||.. ++-.++. +..
T Consensus 185 ~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~--~ilh~c-g~~~--~~~~~~~---~~~ 254 (338)
T TIGR01464 185 YLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNV--PVILFA-KGAG--HLLEELA---ETG 254 (338)
T ss_pred HHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEe-CCcH--HHHHHHH---hcC
Confidence 3445667999999864435532 4567777 99999999999987 322 355554 3332 3444554 334
Q ss_pred CCeeeecCC
Q 009121 194 SSIFYTDQS 202 (543)
Q Consensus 194 PDI~ytDr~ 202 (543)
.|++-.|..
T Consensus 255 ~~~~s~d~~ 263 (338)
T TIGR01464 255 ADVVGLDWT 263 (338)
T ss_pred CCEEEeCCC
Confidence 577766654
No 176
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=30.06 E-value=2.2e+02 Score=25.80 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+.+.+.++.++++|.-.|.+.+.-|+-. .+.....++++.+++.|.+-..+..+
T Consensus 135 ~~~~~~~i~~~~~~g~~~v~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~ 189 (216)
T smart00729 135 VEDVLEAVEKLREAGPIKVSTDLIVGLPG------ETEEDFEETLKLLKELGPDRVSIFPL 189 (216)
T ss_pred HHHHHHHHHHHHHhCCcceEEeEEecCCC------CCHHHHHHHHHHHHHcCCCeEEeeee
Confidence 35555566666666632233333333331 14555666666666666664333333
No 177
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=29.73 E-value=1.1e+02 Score=29.50 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcC
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIG 163 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 163 (543)
|++++++.++.||..||+.|-|--=|+.+-|. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 57899999999999999999998888887762 3356777777765
No 178
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=29.26 E-value=1e+02 Score=30.55 Aligned_cols=59 Identities=7% Similarity=0.161 Sum_probs=42.9
Q ss_pred hHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 009121 403 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 461 (543)
Q Consensus 403 Y~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL 461 (543)
-..|++.+.+.|.....+|+.-.--...---..--+.++..+....++.|+.++|||.-
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE 182 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYGINPAGEGGE 182 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 56799999999999999999643211100002223578888889899999999999975
No 179
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=28.72 E-value=9.9 Score=31.97 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCcEEEEEEe
Q 009121 152 YLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 152 Y~~l~~mv~~~GLKv~~vmsF 172 (543)
-+++++.|++.|+||.|+=+|
T Consensus 44 ~~~~l~~a~~~~~kv~p~C~y 64 (78)
T PF14542_consen 44 VEAALDYARENGLKVVPTCSY 64 (78)
T ss_dssp HHHHHHHHHHTT-EEEETSHH
T ss_pred HHHHHHHHHHCCCEEEEECHH
Confidence 468899999999999777666
No 180
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=28.44 E-value=1.1e+02 Score=36.48 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=39.0
Q ss_pred ccCcHHHH-HHHHHHHHHcCcceEEeeeeeeccccCCCceeec-----------------hhHHHHHHHHHHcCCcEEEE
Q 009121 108 TVNHAKAI-AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW-----------------SGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 108 ~~~~~~~~-~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKv~~v 169 (543)
.+..-+++ +..|..||++||+.|.+-- +.|. +....| ..+++|++.++++||+| |
T Consensus 245 ~~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~V--i 317 (758)
T PLN02447 245 KVNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRV--L 317 (758)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEE--E
Confidence 34444565 5679999999999997642 2221 111122 45899999999999999 5
Q ss_pred EEe
Q 009121 170 LCF 172 (543)
Q Consensus 170 msF 172 (543)
|-+
T Consensus 318 lDv 320 (758)
T PLN02447 318 MDV 320 (758)
T ss_pred EEe
Confidence 543
No 181
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=28.44 E-value=2.3e+02 Score=26.84 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=48.0
Q ss_pred EEecceeecCCCCCChhh----hcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCC---CCCCCCChHHHHHHH
Q 009121 372 GKIPLIHSWYKTRSHPSE----LTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQ---PRESFSSPESLLAQI 444 (543)
Q Consensus 372 aKV~GIHWwy~t~SHaAE----lTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~d~e~---p~~~~s~Pe~Lv~QV 444 (543)
+++.|+||+|........ +.-|+ .....-|.++++.|++. +...+++++.... |....-+-+.+++.+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 378999999976543211 11132 23345588999999874 5566677775432 222134678888888
Q ss_pred HHHHHhcCC
Q 009121 445 RTACNKHGV 453 (543)
Q Consensus 445 ~~aa~~~Gv 453 (543)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 888776653
No 182
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=28.31 E-value=65 Score=33.33 Aligned_cols=45 Identities=11% Similarity=-0.081 Sum_probs=35.0
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHH
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEK 161 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~ 161 (543)
+-+++..++|+++|.+..-|+...--+|..|. +-+++++++-+++
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~ 222 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG 222 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44556678899999998889743322667777 9999999999987
No 183
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.25 E-value=74 Score=32.87 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=50.4
Q ss_pred CCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEE
Q 009121 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (543)
Q Consensus 90 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 169 (543)
.+|+||-+-.|--+.- -...++.-|+.+|++|++.|+|.. |.++ ..=.-..++++++++.||||.+=
T Consensus 66 ~gV~v~~GGtl~E~a~-----~q~~~~~yl~~~k~lGf~~IEiSd--Gti~------l~~~~r~~~I~~~~~~Gf~v~~E 132 (244)
T PF02679_consen 66 HGVYVYPGGTLFEVAY-----QQGKFDEYLEECKELGFDAIEISD--GTID------LPEEERLRLIRKAKEEGFKVLSE 132 (244)
T ss_dssp TT-EEEE-HHHHHHHH-----HTT-HHHHHHHHHHCT-SEEEE----SSS---------HHHHHHHHHHHCCTTSEEEEE
T ss_pred cCCeEeCCcHHHHHHH-----hcChHHHHHHHHHHcCCCEEEecC--Ccee------CCHHHHHHHHHHHHHCCCEEeec
Confidence 3778877766654432 145799999999999999999864 3333 34456678999999999998433
Q ss_pred EEee-cCCCCCCCCChhchh
Q 009121 170 LCFH-ALKQPKIPLPDWVSQ 188 (543)
Q Consensus 170 msFH-vgD~~~IpLP~WV~~ 188 (543)
..-. .+.....++..|+..
T Consensus 133 vG~K~~~~~~~~~~~~~i~~ 152 (244)
T PF02679_consen 133 VGKKDPESDFSLDPEELIEQ 152 (244)
T ss_dssp ES-SSHHHHTT--CCHHHHH
T ss_pred ccCCCchhcccCCHHHHHHH
Confidence 3222 222233345667765
No 184
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=28.24 E-value=1.3e+02 Score=29.85 Aligned_cols=82 Identities=9% Similarity=0.057 Sum_probs=56.3
Q ss_pred HHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHHHHhccCCCCcc
Q 009121 404 AAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVD 483 (543)
Q Consensus 404 ~~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~~~~~ 483 (543)
..+.+.++++|..+.+.+++..|-... ....|+..+++|+..++.-.|-|.=.+.. ...++..+|+..+ .-.
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~--~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~l----k~~ 213 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD--EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDL----KEQ 213 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC--CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHH----HHC
Confidence 347888999999999999987776532 12457888999987766544555543321 1346888888887 356
Q ss_pred eeEEeecCcc
Q 009121 484 LFTYQRMGAY 493 (543)
Q Consensus 484 ~FTylRm~~~ 493 (543)
||+|.++.+.
T Consensus 214 Gy~fvtl~el 223 (224)
T TIGR02884 214 GYTFKSLDDL 223 (224)
T ss_pred CCEEEEhHHc
Confidence 6777777654
No 185
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=28.14 E-value=2.1e+02 Score=28.87 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCcee------echhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhh
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKY------NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQI 189 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~ 189 (543)
.++++..++.|++.|.+-+-.. |.....++ -+....++++.+++.|+++. +++ -|....+ |..+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~--~~~~~~~-~~~~~~~ 144 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA--EDASRAD-PDFLIEF 144 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee--ccCCCCC-HHHHHHH
Confidence 4556778899999988877322 21111222 35678899999999999773 333 3444444 6666653
Q ss_pred h----ccCCC-eeeecCCCCcc
Q 009121 190 G----ESQSS-IFYTDQSGQQF 206 (543)
Q Consensus 190 g----~~~PD-I~ytDr~G~rn 206 (543)
. +.-+| |.+.|-.|.-.
T Consensus 145 ~~~~~~~G~~~i~l~DT~G~~~ 166 (259)
T cd07939 145 AEVAQEAGADRLRFADTVGILD 166 (259)
T ss_pred HHHHHHCCCCEEEeCCCCCCCC
Confidence 2 22233 66667666553
No 186
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=28.07 E-value=43 Score=34.75 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHH----HHHHHHcCCcEEEEEEee
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAV----AEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l----~~mv~~~GLKv~~vmsFH 173 (543)
..+|.+|+..||+.|-.--.|= ++...++.|- ..+++| ..-+.++|||+.+-+..|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~-~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDP-YPMKTAEVYL-DHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCC-CCcccHHHHH-HHHHHHHccchhhHHhhCceeeEEeccC
Confidence 4689999999999999888887 6666666552 222333 334789999999999999
No 187
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.99 E-value=1.1e+02 Score=30.32 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeec--hhHHHHHHHHHHcCCcEEEEEEee
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW--SGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+.++.-++..+.+|++.|.+.-+-..-++..+..+++ ...+++.+++++.|+++ .+-+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEec
Confidence 4578888889999999998632100011111111111 35788999999999988 77776
No 188
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=27.87 E-value=49 Score=33.96 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=38.1
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee---ech---hHHHHHHHHHHcCCc
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---NWS---GYLAVAEMVEKIGLK 165 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs---~Y~~l~~mv~~~GLK 165 (543)
++++..+..++.-.++|+ .|+..|++|||=|- ...|-.| .+. .++++++.|+++..+
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg~--dgePvV~Hg~tlts~i~f~dv~~~I~~~AF~ 85 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPVIYHGHTLTTKIKFSDVLHTIKEHAFV 85 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCceEHHHHHHHHHHhhcc
Confidence 467777777887778887 89999999999652 1112221 122 256777888877664
No 189
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.53 E-value=2.4e+02 Score=29.64 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 87 KSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 87 ~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
+....+|+-+|.=...|-. ..+++=++.+|++|||||.|. -.=...=+++.+.++++||+.
T Consensus 90 ~~~~~~Pivlm~Y~Npi~~-------~Gie~F~~~~~~~GvdGlivp------------DLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 90 AKGVKVPIVLMTYYNPIFN-------YGIEKFLRRAKEAGVDGLLVP------------DLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred hcCCCCCEEEEEeccHHHH-------hhHHHHHHHHHHcCCCEEEeC------------CCChHHHHHHHHHHHHcCCcE
Q ss_pred EEEEEeecCCCCCCCCChhchhhhccC-CCeeeecCCCCc
Q 009121 167 HVSLCFHALKQPKIPLPDWVSQIGESQ-SSIFYTDQSGQQ 205 (543)
Q Consensus 167 ~~vmsFHvgD~~~IpLP~WV~~~g~~~-PDI~ytDr~G~r 205 (543)
..+.+= -+.+.++..+.+.- .-|+|..+.|..
T Consensus 151 I~lvaP-------tt~~~rl~~i~~~a~GFiY~vs~~GvT 183 (265)
T COG0159 151 IFLVAP-------TTPDERLKKIAEAASGFIYYVSRMGVT 183 (265)
T ss_pred EEEeCC-------CCCHHHHHHHHHhCCCcEEEEeccccc
No 190
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=27.49 E-value=1e+02 Score=29.07 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=35.9
Q ss_pred CCCCCCCCCCceEEEeeeceeeeCCCccCcHHHHHHHHHHHHHcCcc
Q 009121 82 SSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVE 128 (543)
Q Consensus 82 ~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVd 128 (543)
+..+.-..+++++||---.|+ +--|.+.+.+++..++|+++|-+
T Consensus 82 sV~~pLsd~gigIFavStydt---DhiLVr~~dLekAv~~L~eaGhe 125 (128)
T COG3603 82 SVSQPLSDNGIGIFAVSTYDT---DHILVREEDLEKAVKALEEAGHE 125 (128)
T ss_pred hhhhhHhhCCccEEEEEeccC---ceEEEehhhHHHHHHHHHHcCCc
Confidence 555556677999998765555 77889999999999999999965
No 191
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.37 E-value=1.6e+02 Score=30.18 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhh-
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQI- 189 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~- 189 (543)
+.+..+.++++....|++.|.+-+-... .+--.+.++.+++.|+++++-+++ -+. ...-|..+.+.
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~~----------~~~~~~~i~~ak~~G~~v~~~i~~--~~~-~~~~~~~~~~~~ 155 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALND----------VRNLEVAIKAVKKAGKHVEGAICY--TGS-PVHTLEYYVKLA 155 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCCh----------HHHHHHHHHHHHHCCCeEEEEEEe--cCC-CCCCHHHHHHHH
Confidence 3456788999999999999888553322 456788999999999999765554 111 22236666653
Q ss_pred ---hccCCC-eeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhh
Q 009121 190 ---GESQSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSF 240 (543)
Q Consensus 190 ---g~~~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f 240 (543)
.+.-+| |.+.|-.|.-. | +...+..+.+++++
T Consensus 156 ~~~~~~Ga~~i~l~DT~G~~~------------------P-~~v~~lv~~l~~~~ 191 (275)
T cd07937 156 KELEDMGADSICIKDMAGLLT------------------P-YAAYELVKALKKEV 191 (275)
T ss_pred HHHHHcCCCEEEEcCCCCCCC------------------H-HHHHHHHHHHHHhC
Confidence 122233 45555555543 4 44556667777654
No 192
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=27.31 E-value=1.6e+02 Score=31.63 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=49.9
Q ss_pred ceeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeech-----hHHHHHHHHHHcCCcEEEEEEee
Q 009121 100 LDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 100 Ld~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+-+|.--|.+.+++++..--+.||++|.+.+...+| +..-.-|.|. +|+-|.+.+++.||.+ +-..|
T Consensus 94 ~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v--~tev~ 165 (335)
T PRK08673 94 PVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPI--VTEVM 165 (335)
T ss_pred eEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcE--EEeeC
Confidence 334444577889999999999999999997776665 2232334554 5999999999999999 55554
No 193
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=27.22 E-value=1.2e+02 Score=30.33 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=35.2
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
-....||++|+++|.+. +++++|.=+--.+-++.+.++||+. |+|.
T Consensus 72 vS~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi 117 (205)
T TIGR00419 72 ISAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT 117 (205)
T ss_pred CCHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE
Confidence 34678999999999985 4444465555677777889999987 8887
No 194
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.80 E-value=79 Score=34.10 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
.+.+.|+.+++.|+++|..+. |.++-....+ .. -..++++.|+++||+|
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~~--~~-~~~~~v~~Ah~~GL~V 294 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPI-WMLVDPDENG--KI-VPSEYAKAAKAAGLDI 294 (356)
T ss_pred cHHHHHHHHHhCCccEecCch-hhcccccccc--cc-CCHHHHHHHHHcCCEE
Confidence 355779999999999866543 3343322222 22 5678999999999999
No 195
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.63 E-value=3.5e+02 Score=28.31 Aligned_cols=125 Identities=6% Similarity=0.078 Sum_probs=81.6
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEe---eeeeecc-c-------------------------cCCCceeechhHHHHH
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVEL---PVWWGVA-E-------------------------KEAMGKYNWSGYLAVA 156 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~v---dVWWGiV-E-------------------------~~~p~~YdWs~Y~~l~ 156 (543)
...+-..+.|++.+..|...+++.+++ |=| .+- + ....+.|.=+-+++++
T Consensus 10 aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 88 (326)
T cd06564 10 GRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNL-IFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELI 88 (326)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEEeecCCc-ccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHH
Confidence 445667899999999999999999885 423 221 1 1135678888999999
Q ss_pred HHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCCCeee---------------------------ecCCCCcc--c
Q 009121 157 EMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFY---------------------------TDQSGQQF--K 207 (543)
Q Consensus 157 ~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~PDI~y---------------------------tDr~G~rn--~ 207 (543)
+.|++.|+.|+|-+-+ |.=.....+.+|++.. ++=..-.. .
T Consensus 89 ~yA~~rgI~vIPEID~----------PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~ 158 (326)
T cd06564 89 AYAKDRGVNIIPEIDS----------PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKS 158 (326)
T ss_pred HHHHHcCCeEeccCCC----------cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999665433 2211111111111111 00011112 5
Q ss_pred cccccccCCcccCCCCChhHHHHHHHHHHHHhhccc
Q 009121 208 GCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243 (543)
Q Consensus 208 E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~ 243 (543)
+|+-+|.|+.+.. .+..+.|.+|++...+.+.+.
T Consensus 159 ~~~HiGgDE~~~~--~~~~~~~~~f~~~~~~~v~~~ 192 (326)
T cd06564 159 DTVHIGADEYAGD--AGYAEAFRAYVNDLAKYVKDK 192 (326)
T ss_pred CEEEecccccccc--CccHHHHHHHHHHHHHHHHHc
Confidence 8999999999865 456788999998888888774
No 196
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.29 E-value=1.7e+02 Score=29.17 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHc-CCcE
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI-GLKL 166 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv 166 (543)
..|+..|+.+|++|+++|.+.+=...-.. .+. .+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcE
Confidence 46899999999999999988763211000 000 0115688899999999 6665
No 197
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=26.08 E-value=76 Score=32.81 Aligned_cols=47 Identities=11% Similarity=-0.056 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHc
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKI 162 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~ 162 (543)
.+-++++.++|+++|.+..=|+.-.--+|..|. +-+++++++-+++.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~ 232 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL 232 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 345566778999999888877632223455555 88999999999775
No 198
>PLN02784 alpha-amylase
Probab=25.96 E-value=1.5e+02 Score=36.10 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeec-------------hhHHHHHHHHHHcCCcEEEEE
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW-------------SGYLAVAEMVEKIGLKLHVSL 170 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKv~~vm 170 (543)
.+.|...|..|+++||++|-+.-=. +..++.-|+- ..+++|++.++++|+||.+=+
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~---~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPT---ESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC---CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 6899999999999999999887632 3223333432 358999999999999994433
No 199
>PRK03705 glycogen debranching enzyme; Provisional
Probab=25.93 E-value=86 Score=36.51 Aligned_cols=81 Identities=22% Similarity=0.450 Sum_probs=46.7
Q ss_pred HHHHHHHcCcceEEee-e----------------eeec-------cccCCCceee------chhHHHHHHHHHHcCCcEE
Q 009121 118 GLKALKLLGVEGVELP-V----------------WWGV-------AEKEAMGKYN------WSGYLAVAEMVEKIGLKLH 167 (543)
Q Consensus 118 ~L~~LK~~GVdGV~vd-V----------------WWGi-------VE~~~p~~Yd------Ws~Y~~l~~mv~~~GLKv~ 167 (543)
.|..||++||+.|.+- | .||. +|+ .|- =..+++|++-+++.||||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~----~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP----AYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc----ccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999762 2 2442 222 111 1358999999999999994
Q ss_pred EEEEe-ecCCCCCCCCChhchhhhccCCCeeeecCCCC
Q 009121 168 VSLCF-HALKQPKIPLPDWVSQIGESQSSIFYTDQSGQ 204 (543)
Q Consensus 168 ~vmsF-HvgD~~~IpLP~WV~~~g~~~PDI~ytDr~G~ 204 (543)
.=+-| |.++.- . -..|+.-.+..+|.-++.+..|.
T Consensus 260 lDvV~NHt~~~~-~-~~~~~~~~~~d~~~yy~~~~~g~ 295 (658)
T PRK03705 260 LDVVFNHSAELD-L-DGPTLSLRGIDNRSYYWIREDGD 295 (658)
T ss_pred EEEcccCccCcC-C-CCcchhcccCCCccceEECCCCC
Confidence 44444 544311 0 11222223334455555665554
No 200
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=25.81 E-value=1.4e+02 Score=31.65 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHHHHcCcceEEeeee--eeccccCCCceeechhHHHHHHHHHHcCC
Q 009121 110 NHAKAIAAGLKALKLLGVEGVELPVW--WGVAEKEAMGKYNWSGYLAVAEMVEKIGL 164 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 164 (543)
.+++-+.---++.+++|.||+|+.|. =...=.++++|.++..++++.+-++..+.
T Consensus 226 Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 226 GRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred cchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 34444444456668999999999998 22222368999999999999998887654
No 201
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=25.70 E-value=3.3e+02 Score=26.66 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeec-cccCC-----CceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGV-AEKEA-----MGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGi-VE~~~-----p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
+-+.+.+.++..++.|+|-|..++-+-. ..... ....+-...+.+.+++++.|.-+ ++.+
T Consensus 17 n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i--~~G~ 82 (261)
T cd07585 17 NLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTI--LAGL 82 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHHHcCcEE--EEec
Confidence 4567888888888999999998885421 11000 11112346778889999986655 6666
No 202
>PRK12568 glycogen branching enzyme; Provisional
Probab=25.42 E-value=1.6e+02 Score=34.97 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=39.5
Q ss_pred cCcHHHHHHH-HHHHHHcCcceEEeee--------eeec-------cccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 109 VNHAKAIAAG-LKALKLLGVEGVELPV--------WWGV-------AEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 109 ~~~~~~~~~~-L~~LK~~GVdGV~vdV--------WWGi-------VE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.-+.+.+... |..||++||+.|.+-= -||. +++ .=| .=..++++++.++++||+| ||-+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~V--IlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGV--ILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEE--EEEe
Confidence 3456677776 5999999999997632 1431 111 000 1135899999999999999 6655
No 203
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.42 E-value=1.8e+02 Score=28.64 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
.+.+.+.+.+++||+. +|-|.+-.=||.-....|. ..-+++++.+-+.|..+ |++-|
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~--IiG~H 215 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADL--VIGHH 215 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCE--EEcCC
Confidence 3568899999999988 9999999999973322232 23356666666789888 99888
No 204
>PRK09936 hypothetical protein; Provisional
Probab=25.34 E-value=1.7e+02 Score=31.21 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeee--eeccccCCCceeec----hhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCCh
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVW--WGVAEKEAMGKYNW----SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~~p~~YdW----s~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~ 184 (543)
.+++|+.-|+++|..|++-+.|- | ||.- || -+..++++.+++.||||++=|-+ =|.
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQ-Wt~yG~~--------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~---------Dp~ 97 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQ-WTRYGDA--------DFGGQRGWLAKRLAAAQQAGLKLVVGLYA---------DPE 97 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-eeeccCC--------CcccchHHHHHHHHHHHHcCCEEEEcccC---------ChH
Confidence 47899999999999999999875 4 3321 33 36788999999999999555544 378
Q ss_pred hchhh
Q 009121 185 WVSQI 189 (543)
Q Consensus 185 WV~~~ 189 (543)
|...+
T Consensus 98 y~q~~ 102 (296)
T PRK09936 98 FFMHQ 102 (296)
T ss_pred HHHHH
Confidence 87654
No 205
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=25.33 E-value=1.7e+02 Score=29.03 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
.++..|..+.++|+++|.+ |.+-.....+..++=...+++-++++++||++
T Consensus 11 ~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred cHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4788999999999999988 33322211122333345888999999999985
No 206
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=25.25 E-value=8.7e+02 Score=26.08 Aligned_cols=163 Identities=13% Similarity=0.175 Sum_probs=96.7
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeee--eecccc----------CCCceeechhHHHHHHHHHHcCCcEEE-EEEeec
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVW--WGVAEK----------EAMGKYNWSGYLAVAEMVEKIGLKLHV-SLCFHA 174 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~----------~~p~~YdWs~Y~~l~~mv~~~GLKv~~-vmsFHv 174 (543)
.+.+++.+++-|+.+|+.|++.|.|||= +|.|== ..-..+ -.-.+++++.++++|+-+++ |.+|
T Consensus 8 ~a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~-i~D~~~l~~~l~e~gIY~IARIv~F-- 84 (316)
T PF13200_consen 8 SAGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY-IKDLKALVKKLKEHGIYPIARIVVF-- 84 (316)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc-ccCHHHHHHHHHHCCCEEEEEEEEe--
Confidence 4556788999999999999999999986 664311 111122 35678899999999999866 4555
Q ss_pred CCCCCCCCChhchhhhccCCCeeeecCCCCccc--cccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCceeEEE
Q 009121 175 LKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFK--GCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGIS 252 (543)
Q Consensus 175 gD~~~IpLP~WV~~~g~~~PDI~ytDr~G~rn~--E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~ 252 (543)
.|...+ +++||..+....|..=. +-.+ |+|-- .+.-.+|.-..+.+.+.. =+.||+
T Consensus 85 -kD~~la---------~~~pe~av~~~~G~~w~d~~~~~-WvnP~--------~~evw~Y~i~IA~Eaa~~---GFdEIq 142 (316)
T PF13200_consen 85 -KDPVLA---------EAHPEWAVKTKDGSVWRDNEGEA-WVNPY--------SKEVWDYNIDIAKEAAKL---GFDEIQ 142 (316)
T ss_pred -cChHHh---------hhChhhEEECCCCCcccCCCCCc-cCCCC--------CHHHHHHHHHHHHHHHHc---CCCEEE
Confidence 222222 45777766666664321 1111 44433 467888888888887764 233333
Q ss_pred eeccCCccCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCC
Q 009121 253 MGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNP 302 (543)
Q Consensus 253 VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~~lr~~a~~~gn~ 302 (543)
.= =+|||.--...+ =.|+. +.-+-.=-.++.+|=+.|++.+++
T Consensus 143 fD-----YIRFP~~~~~~~-l~y~~-~~~~~~r~~aI~~Fl~~a~~~l~~ 185 (316)
T PF13200_consen 143 FD-----YIRFPDEGRLSG-LDYSE-NDTEESRVDAITDFLAYAREELHP 185 (316)
T ss_pred ee-----eeecCCCCcccc-cccCC-CCCcchHHHHHHHHHHHHHHHHhH
Confidence 21 238888222222 23322 111111125667777777776544
No 207
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=25.09 E-value=37 Score=36.80 Aligned_cols=221 Identities=17% Similarity=0.172 Sum_probs=102.4
Q ss_pred HHHHHHHc-CcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCCCe
Q 009121 118 GLKALKLL-GVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSI 196 (543)
Q Consensus 118 ~L~~LK~~-GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~PDI 196 (543)
.|..+++. ||+||.....+--. ...++-...+++-+.++++||++-||=|. |. .+..+.
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv----------pv--~e~Ikl---- 75 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV----------PV--HEDIKL---- 75 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES----------------HHHHC----
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC----------Ch--HHHHhc----
Confidence 46778886 99999988765222 24566677889999999999999998776 32 222111
Q ss_pred eeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCCCCCCCCCCCCC---
Q 009121 197 FYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSS--- 273 (543)
Q Consensus 197 ~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W--- 273 (543)
...| |. + =|+.|.+.+|++... | |.-| -|-=.|- -+ |
T Consensus 76 ---G~~~-RD---------~--------~Ieny~~~Irnlg~~-----G--I~vv----------cYNFMPv-~d-WtRT 115 (351)
T PF03786_consen 76 ---GLPG-RD---------E--------EIENYKQTIRNLGKA-----G--IKVV----------CYNFMPV-FD-WTRT 115 (351)
T ss_dssp ---T-TT-HH---------H--------HHHHHHHHHHHHHHT-----T----EE----------EEE--SS--S----S
T ss_pred ---CCCc-HH---------H--------HHHHHHHHHHHHHhc-----C--CCEE----------EEEeeee-ee-eeec
Confidence 1122 22 1 267888888887764 1 1112 1221222 22 4
Q ss_pred --cCCCCcc--cccccHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCccchhhHHHHHHHHHH
Q 009121 274 --KIPGVGE--FQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLI 349 (543)
Q Consensus 274 --~~PGiGE--FQCYDky~~~~lr~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~gg~~~s~YGrFFL~WYs~~L~ 349 (543)
.+|+.|. =.+||.-..+++.-+..+.-+.+.+..=|-|..+|- .=|++ ....|+..=-+=+-.-|.
T Consensus 116 ~l~~~~rgGa~~l~Fd~~~~~~~d~~il~~~~a~~~~~lPg~~~~~~------~~~~~----~l~~y~~i~~e~lw~nl~ 185 (351)
T PF03786_consen 116 DLAYPLRGGATALRFDHDDFAAFDPHILKRPGAEADYTLPGWEEEYL------EEFRE----LLAAYGGIDEEQLWENLK 185 (351)
T ss_dssp EEEEE-TTS-EEEEEECCCCCTS-HHHHHHT------------CCCH------HHHHH----HHHHCCT--HHHHHHHHH
T ss_pred cccccCCCCcEEEEEcHHHHhccCHHhhhccccccCCCCCCCChHHH------HHHHH----HHHHhcCCCHHHHHHHHH
Confidence 2333222 234444433333333322222233222122222220 00111 122344444444555667
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhhcccccC-CCCCCchHHHHHHHhh--CCcEEEEeec
Q 009121 350 SHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYN-TAKRDGYAAVAEMFAK--NSCKMILPGM 422 (543)
Q Consensus 350 ~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYN-t~~rdGY~~Ia~mf~r--h~~~l~FTCl 422 (543)
--.++|+-.|.+ .+|+|+ || -.+|+.+ .-|.=. .++.++|..|+++.-. ||++||--|+
T Consensus 186 yFL~~v~PvAEe----~gV~la-----iH--PDDPP~~---~~GlpRi~~~~e~~~~~~~~~~Sp~nGltfC~Gs~ 247 (351)
T PF03786_consen 186 YFLEAVIPVAEE----AGVKLA-----IH--PDDPPWP---LFGLPRIVSTAEDLKRILDLVDSPANGLTFCTGSL 247 (351)
T ss_dssp HHHHHHHHHHHH----CT-EEE-----EE----SSSS----BTTB---TTSHHHHHHHHHCT-STTEEEEEECCHH
T ss_pred HHHHhhhHHHHH----hCCEEE-----eC--CCCCCCc---cCCCCcccCCHHHHHHHHHhCCCccccEEeecCcc
Confidence 777888888864 467776 35 4555555 456521 2457788888888755 6777777666
No 208
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=24.89 E-value=58 Score=33.37 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=37.7
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee-c-----hhHHHHHHHHHHcCCc
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN-W-----SGYLAVAEMVEKIGLK 165 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-W-----s~Y~~l~~mv~~~GLK 165 (543)
++++..+..+++-.++|+ .|+..|++|||=|- ...|-.|. + =..+++++.|+++..+
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg~--dgePvV~HG~tlts~i~f~dv~~~I~~~aF~ 85 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPIIYHGHTLTSKIKFMDVLKTIKEHAFV 85 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCCcCHHHHHHHHHHHhcc
Confidence 456777777777777776 89999999999542 11233331 1 2467788888887654
No 209
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=24.87 E-value=1.9e+02 Score=27.81 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
.++-++.++++|++.|.+--+. +..++.+.+++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5667788899999988733221 145677889999999 998888887
No 210
>PLN02417 dihydrodipicolinate synthase
Probab=24.71 E-value=2.4e+02 Score=28.86 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeec--hhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhch
Q 009121 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW--SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVS 187 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~ 187 (543)
++.+.--...+..+++|+|+|++ ..|--|.- .+..+.++-+.++. ||+=.+.-....+.||.-+.
T Consensus 80 ~~t~~~i~~a~~a~~~Gadav~~---------~~P~y~~~~~~~i~~~f~~va~~~----pi~lYn~P~~tg~~l~~~~l 146 (280)
T PLN02417 80 NSTREAIHATEQGFAVGMHAALH---------INPYYGKTSQEGLIKHFETVLDMG----PTIIYNVPGRTGQDIPPEVI 146 (280)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEE---------cCCccCCCCHHHHHHHHHHHHhhC----CEEEEEChhHhCcCCCHHHH
Q ss_pred hhhccCCC-eeeecCCCCccccccccccCCcccCCC
Q 009121 188 QIGESQSS-IFYTDQSGQQFKGCLSLAVDDLPVLDG 222 (543)
Q Consensus 188 ~~g~~~PD-I~ytDr~G~rn~E~LSl~~D~~pvl~G 222 (543)
..-.++|. +-++|.+|. ..+..+-.|++.|+.|
T Consensus 147 ~~l~~~pni~giKdss~~--~~~~~~~~~~~~v~~G 180 (280)
T PLN02417 147 FKIAQHPNFAGVKECTGN--DRVKQYTEKGILLWSG 180 (280)
T ss_pred HHHhcCCCEEEEEeCCCc--HHHHHHhcCCeEEEEc
No 211
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=24.49 E-value=1.7e+02 Score=31.00 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhch
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVS 187 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~ 187 (543)
+.+.....|+.+|++|+.. +||. .|.-+-= --..|.++.++.|+.|++.=.||.. ...|.|+.
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GR-d~~~l~~is~~tGv~II~~TG~y~~----~~~p~~~~ 98 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGR-DVEALREISRRTGVNIIASTGFYKE----PFYPEWVR 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-SG----GCSCHHHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCc-CHHHHHHHHHHhCCeEEEeCCCCcc----ccCChhhh
Confidence 6788999999999999876 3453 3221111 1267888899999999665566532 23567775
No 212
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=24.39 E-value=1.5e+02 Score=30.90 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
+.++.-|+.+|++|.+.|++.- |.++ .+=+.-.+|++++.+.|+++
T Consensus 90 ~kvdeyl~e~~~lGfe~iEIS~--G~i~------m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 90 DKVDEYLNEAKELGFEAIEISN--GTIP------MSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred ccHHHHHHHHHHcCccEEEecC--Ceee------cchHHHHHHHHHHHhcccEE
Confidence 4789999999999999998753 3332 35577899999999999999
No 213
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.33 E-value=2.1e+02 Score=22.61 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 167 (543)
.++.-++++|+.|++.|-+ .+- . +..++.++.+.+++.|+++.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i------TDh-~----~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI------TDH-G----NLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE------eeC-C----cccCHHHHHHHHHHcCCeEE
Confidence 3677889999999999955 442 2 56677888899999999883
No 214
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=23.91 E-value=2.8e+02 Score=26.70 Aligned_cols=136 Identities=16% Similarity=0.178 Sum_probs=78.2
Q ss_pred cceEEeeee-eeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCC-----------CCCCCChhchhhhccCC
Q 009121 127 VEGVELPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQ-----------PKIPLPDWVSQIGESQS 194 (543)
Q Consensus 127 VdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~-----------~~IpLP~WV~~~g~~~P 194 (543)
++|.=++.| |.+ + ++++=+--++.++..++.|++-.++...=.++. |..|.+.||...-+
T Consensus 1 itGtF~q~~~~d~-~----~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~--- 72 (166)
T PF14488_consen 1 ITGTFLQPWSWDI-H----QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILD--- 72 (166)
T ss_pred CceEEEccccchh-h----cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHH---
Confidence 356666666 655 3 344445668999999999999987776542211 22233334443211
Q ss_pred CeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhhcccccCceeEEEeeccCCccCCCCCCCCCCCCCc
Q 009121 195 SIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSK 274 (543)
Q Consensus 195 DI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~ 274 (543)
-.|+.|-.- ++.|+.|.- -+. .+-.+.-.++-+...+++.. +|.+||+-.| |=
T Consensus 73 ---~A~~~Gmkv--~~Gl~~~~~-~w~-~~~~~~~~~~~~~v~~el~~-------------------~yg~h~sf~G-WY 125 (166)
T PF14488_consen 73 ---AADKYGMKV--FVGLYFDPD-YWD-QGDLDWEAERNKQVADELWQ-------------------RYGHHPSFYG-WY 125 (166)
T ss_pred ---HHHHcCCEE--EEeCCCCch-hhh-ccCHHHHHHHHHHHHHHHHH-------------------HHcCCCCCce-EE
Confidence 134555443 566666643 233 23334455556667777777 8999998888 97
Q ss_pred CCC---CcccccccHHHHHHHHHHHHHc
Q 009121 275 IPG---VGEFQCCDRNMLNLLQQHAEAN 299 (543)
Q Consensus 275 ~PG---iGEFQCYDky~~~~lr~~a~~~ 299 (543)
+|- ...+. +.-..+.|.+++++.
T Consensus 126 ip~E~~~~~~~--~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 126 IPYEIDDYNWN--APERFALLGKYLKQI 151 (166)
T ss_pred EecccCCcccc--hHHHHHHHHHHHHHh
Confidence 763 22111 234455666666653
No 215
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=23.84 E-value=2.4e+02 Score=28.19 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=38.2
Q ss_pred ccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 108 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
.+.+.+.....|+.++++||..|. | +|.. +.++ +| +.+.+++++.|+++.+...+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~Gvttiv-~--~~~~---~~~~-~~---~~~~~~~~~~g~~v~~~~G~h 82 (293)
T cd00530 27 DLADVEAAKEELKRFRAHGGRTIV-D--ATPP---GIGR-DV---EKLAEVARATGVNIVAATGFY 82 (293)
T ss_pred chhhHHHHHHHHHHHHHcCCCeEE-E--cCCc---ccCc-CH---HHHHHHHHHhCCcEEEecccC
Confidence 344566778899999999998772 2 2211 0011 23 667788889999998888887
No 216
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.76 E-value=1.1e+02 Score=32.90 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
...-..+.++++|.|+|.+-|+|+-=+...-.+-......++.+-|++.||-+
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPl 159 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPF 159 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCce
Confidence 34445678999999999999999932221115667888999999999999998
No 217
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=23.72 E-value=3.7e+02 Score=35.10 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee-------------chhHHHHHHHHHHcCCcEEEEEEe
Q 009121 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN-------------WSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
..-+.+.+.|-.||++||+.|-+.-.+--.. .+..-|| ...+++|++.++++||+| ||-+
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~-gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~v--ilDi 827 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILKARP-GSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQ--LLDI 827 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcCCCC-CCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 3457899999999999999998876553221 1222332 456889999999999999 5554
No 218
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.71 E-value=1.5e+02 Score=29.65 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceee--chhHHHHHHHHHHcCCcEEEEEEee
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN--WSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd--Ws~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+.+++.++..+.+|+..|.+.-....-+...+..++ -+.+++++++++++|+++ .|-.|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l--~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTL--AVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEE--EEeeC
Confidence 357888999999999988653210001111111122 245678999999999988 66665
No 219
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=23.70 E-value=3.4e+02 Score=28.21 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCCcee------echhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC----hh
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKY------NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP----DW 185 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP----~W 185 (543)
.+++++..++|++.|.+-+ +.-|...-.++ -+.-+.+++++++++||++++.+ .|....++. .|
T Consensus 77 ~~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~----ed~~r~d~~~~v~~~ 150 (279)
T cd07947 77 KEDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL----EDITRADIYGFVLPF 150 (279)
T ss_pred HHHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE----EcccCCCcccchHHH
Confidence 4566667778999988754 44333333333 34558888899999999985544 443333333 47
Q ss_pred chhhhc----cCCC--eeeecCCCCcc
Q 009121 186 VSQIGE----SQSS--IFYTDQSGQQF 206 (543)
Q Consensus 186 V~~~g~----~~PD--I~ytDr~G~rn 206 (543)
+.+..+ .-.| |-+.|--|.-+
T Consensus 151 ~~~~~~~~~~~G~~~~i~l~DTvG~a~ 177 (279)
T cd07947 151 VNKLMKLSKESGIPVKIRLCDTLGYGV 177 (279)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCcCC
Confidence 776533 3344 44667666554
No 220
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.00 E-value=2.6e+02 Score=28.75 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=63.0
Q ss_pred eeeeCCCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee---echhHHHHHHHHHHcCCcEEEEEEeecCCC
Q 009121 101 DTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---NWSGYLAVAEMVEKIGLKLHVSLCFHALKQ 177 (543)
Q Consensus 101 d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~ 177 (543)
.+|+..+.+.+.+.+++.++.|++.|++.+.-+.=+.. .+.| +..=-++|-++.++-..|. ||+.=+|+.
T Consensus 2 ~iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~-----~~~~a~s~~~Ra~dL~~a~~d~~i~a--I~~~rGG~g 74 (282)
T cd07025 2 GIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLAR-----DGYLAGTDEERAADLNAAFADPEIKA--IWCARGGYG 74 (282)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhh-----cCccCCCHHHHHHHHHHHhhCCCCCE--EEEcCCcCC
Confidence 35555566655689999999999999998877654321 1112 2334456666677777777 999988888
Q ss_pred CCCCCChhchhhhccCCCeee
Q 009121 178 PKIPLPDWVSQIGESQSSIFY 198 (543)
Q Consensus 178 ~~IpLP~WV~~~g~~~PDI~y 198 (543)
++=-||.-=++.-+++|-+|+
T Consensus 75 a~rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 75 ANRLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred HHHhhhhCCHHHHhhCCeEEE
Confidence 877788755555667887653
No 221
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.99 E-value=2.3e+02 Score=32.78 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.+.++..++..+++||+.|++-.-...+ .--...+++++++|+++++.+|+
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~lnd~----------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAMNDP----------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeCCcH----------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 4578899999999999999887543333 35778899999999999998887
No 222
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=22.82 E-value=2.9e+02 Score=28.87 Aligned_cols=80 Identities=16% Similarity=0.037 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee---echhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchh
Q 009121 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (543)
Q Consensus 112 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~ 188 (543)
++.+++.++.|++.|++.|.-+..|..- +.+ +-.=-++|-++.++-..|. |||.=+|+.++==||.-=.+
T Consensus 17 ~~~~~~~~~~L~~~G~~v~~~~~~~~~~-----~~~ag~~~~Ra~dL~~a~~Dp~i~a--I~~~rGG~g~~rlL~~lD~~ 89 (308)
T cd07062 17 PHRLERAKKRLENLGFEVVEGPNALKGD-----KYLSASPEERAEELMAAFADPSIKA--IIPTIGGDDSNELLPYLDYE 89 (308)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccccc-----ccccCCHHHHHHHHHHHhcCCCCCE--EEECCcccCHhhhhhhcCHH
Confidence 6899999999999999988888776421 112 2334566777777788777 99998888877777875455
Q ss_pred hhccCCCeee
Q 009121 189 IGESQSSIFY 198 (543)
Q Consensus 189 ~g~~~PDI~y 198 (543)
..+++|-+|.
T Consensus 90 ~i~~~PK~fi 99 (308)
T cd07062 90 LIKKNPKIFI 99 (308)
T ss_pred HHhhCCCEEE
Confidence 5678887653
No 223
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=22.75 E-value=1.5e+02 Score=30.85 Aligned_cols=76 Identities=18% Similarity=0.084 Sum_probs=47.3
Q ss_pred HHHHHHHcCcceEEeeeeeeccccCCCceee---chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhhccCC
Q 009121 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQS 194 (543)
Q Consensus 118 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g~~~P 194 (543)
-.+++.++|+++|.+..=|+.+ -+|.+|+ +-+++++++-+++.|-. .+|+.+| |+.. ++-.++.+. ..
T Consensus 182 ~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~ilh~c-g~~~--~~~~~~~~~---~~ 252 (335)
T cd00717 182 YLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPG-VPVILFA-KGAG--GLLEDLAQL---GA 252 (335)
T ss_pred HHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEc-CCCH--HHHHHHHhc---CC
Confidence 3445567899999754435532 3567777 99999999999998411 1345554 3332 555555533 34
Q ss_pred CeeeecCC
Q 009121 195 SIFYTDQS 202 (543)
Q Consensus 195 DI~ytDr~ 202 (543)
|++-.|..
T Consensus 253 ~~~s~d~~ 260 (335)
T cd00717 253 DVVGLDWR 260 (335)
T ss_pred CEEEeCCC
Confidence 66666654
No 224
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.61 E-value=2.7e+02 Score=28.88 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=48.2
Q ss_pred CCccCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 106 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
=|.+..++++..--+.+|++|+..+.-..|==..-+.+-+-....+++.|.+.+++.||.+ +-..|
T Consensus 22 PC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~--~Tev~ 87 (250)
T PRK13397 22 PCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS--VSEIM 87 (250)
T ss_pred cCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 3667788888888888999999999998884211111111223468999999999999998 54554
No 225
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.33 E-value=1.8e+02 Score=30.77 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCC-------ceeechhHHHHHHHHHHcCCc-EEEEEEe
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAM-------GKYNWSGYLAVAEMVEKIGLK-LHVSLCF 172 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLK-v~~vmsF 172 (543)
+..|+.||++||+.|.+. ||.-.| ...++.-+.+.+++++++|++ |.+-|-+
T Consensus 100 ~e~l~~l~~~Gv~risiG-----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
No 226
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.32 E-value=81 Score=30.77 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHc--CCcEEE
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI--GLKLHV 168 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~--GLKv~~ 168 (543)
+++++.|+.|+++||+||+|.-. .++.++++. +++|++
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~~------------------g~~~~~k~~~~~~~i~~ 41 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSNP------------------GLLELLKELGPDLKIIA 41 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcCH------------------HHHHHHHHhCCCCcEEE
Confidence 47899999999999999999743 256677787 556633
No 227
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=22.13 E-value=3.2e+02 Score=25.62 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCceEEEeeeceeeeCCC-ccCc---HHHH-HHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHc
Q 009121 90 DAVRLFVGLPLDTVSDAN-TVNH---AKAI-AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI 162 (543)
Q Consensus 90 ~~vpv~VMlPLd~V~~~~-~~~~---~~~~-~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~ 162 (543)
++++|.+++--..-.... .+.+ ++++ ++-++.+++.|.|||.+|.-|...+. . -++..|.++++.+|+.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~-~---~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAAD-N---SDRENFITLLRELRSA 136 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcC-c---cHHHHHHHHHHHHHHH
Confidence 577776666432211100 1222 2334 34455668999999999965544332 1 2467777777777764
No 228
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.09 E-value=2e+02 Score=32.02 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=34.3
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCCC-------ceeechhHHHHHHHHHHcCCcEEE
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEAM-------GKYNWSGYLAVAEMVEKIGLKLHV 168 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv~~ 168 (543)
..|+.||++|+..|.+. +|...+ +..+.+.+.+.+++++++|+++.+
T Consensus 288 ell~~l~~aG~~~v~iG-----iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 288 DILHLYRRAGLVHISLG-----TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred HHHHHHHHhCCcEEEEc-----cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 45778888898888775 354332 346777888889999999987743
No 229
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=22.09 E-value=2.4e+02 Score=28.24 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=47.8
Q ss_pred EeeeceeeeCCCccCcHHHHHHHHHHHH-----HcCcc----eEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 96 VGLPLDTVSDANTVNHAKAIAAGLKALK-----LLGVE----GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 96 VMlPLd~V~~~~~~~~~~~~~~~L~~LK-----~~GVd----GV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
+++|-+.|. ++.+.|.++...-|++|+ .+|.. .|.|+.++..+|+ +.+.+.++.+||++
T Consensus 24 ~~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~ 91 (239)
T TIGR02529 24 VMQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEV 91 (239)
T ss_pred Eeccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCce
Confidence 445555555 577889999999999998 34543 5678888887776 57888999999999
Q ss_pred EEEEE
Q 009121 167 HVSLC 171 (543)
Q Consensus 167 ~~vms 171 (543)
..++.
T Consensus 92 ~~li~ 96 (239)
T TIGR02529 92 LHVLD 96 (239)
T ss_pred EEEee
Confidence 55543
No 230
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=21.75 E-value=1.4e+02 Score=32.58 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCcceEEeeeeeecccc----CCCceeechhHHHHHHHHHHcCCcEEEEEEe
Q 009121 114 AIAAGLKALKLLGVEGVELPVWWGVAEK----EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 114 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
.++.-|++||++|++.+...-===+.|. ..|.+-++.+..+..+.|.+.|++-...|-+
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 4666799999999999987544334443 4589999999999999999999999877766
No 231
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.72 E-value=1.9e+02 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=31.2
Q ss_pred cCcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcE
Q 009121 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 166 (543)
..+++....-|+.++++|+.+|-+- .| +.=.++.++++++|+++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~--~g------------~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQ--PG------------AESEELIEAAREAGIRV 105 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE---TT------------S--HHHHHHHHHTT-EE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEE--cc------------hHHHHHHHHHHHcCCEE
Confidence 4568889999999999999887542 22 55579999999999998
No 232
>PRK10150 beta-D-glucuronidase; Provisional
Probab=21.51 E-value=1.6e+02 Score=33.27 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEE
Q 009121 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (543)
Q Consensus 110 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 168 (543)
.+.+++.++|+.||++|++.|++- ...+ -.++.++|-+.||-|..
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s---h~p~-----------~~~~~~~cD~~GllV~~ 354 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS---HYPY-----------SEEMLDLADRHGIVVID 354 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec---cCCC-----------CHHHHHHHHhcCcEEEE
Confidence 467789999999999999999982 1111 14789999999998843
No 233
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=21.45 E-value=1.3e+02 Score=30.95 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHH----HHHcCCcEEEEEEe
Q 009121 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEM----VEKIGLKLHVSLCF 172 (543)
Q Consensus 117 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~m----v~~~GLKv~~vmsF 172 (543)
-....||++|+++|.+. +++++=.+.-=++++.. +.++||+. |+|.
T Consensus 77 vS~~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~K~~~a~~~gl~p--IvCi 126 (250)
T PRK00042 77 ISAEMLKDLGVKYVIIG--------HSERRQYFGETDELVNKKVKAALKAGLTP--ILCV 126 (250)
T ss_pred cCHHHHHHCCCCEEEeC--------cccccCccCcCHHHHHHHHHHHHHCCCEE--EEEc
Confidence 35678999999999995 55556566666777777 99999998 8887
No 234
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=21.09 E-value=1.7e+02 Score=31.63 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 009121 405 AVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 457 (543)
Q Consensus 405 ~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~G 457 (543)
..++..+++|.+-.||||-.-. +....=..-+.++.+.|++.|+.|..
T Consensus 18 ~yi~~a~~~Gf~~iFTSL~ipe-----~~~~~~~~~~~~l~~~a~~~~~~v~~ 65 (357)
T PF05913_consen 18 AYIEKAAKYGFKRIFTSLHIPE-----DDPEDYLERLKELLKLAKELGMEVIA 65 (357)
T ss_dssp HHHHHHHCTTEEEEEEEE--------------HHHHHHHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHCCCCEEECCCCcCC-----CCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3467788899999999985532 11233356788999999999999764
No 235
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.99 E-value=5.4e+02 Score=27.76 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCcceEEeeeeeecc--cc--CCCceeechhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhchhhh
Q 009121 115 IAAGLKALKLLGVEGVELPVWWGVA--EK--EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG 190 (543)
Q Consensus 115 ~~~~L~~LK~~GVdGV~vdVWWGiV--E~--~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~IpLP~WV~~~g 190 (543)
...+++++.++|++.|.+-+--..+ +. .......++...+.++.+++.|++|++. + -|....+ |..+.+..
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~--ed~~r~~-~~~l~~~~ 151 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--A--EDASRTD-LDFLIEFA 151 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--e--ccCCCCC-HHHHHHHH
Confidence 4567888889999988776532221 11 1123446778889999999999998543 2 2333333 67776632
Q ss_pred c----cCC-CeeeecCCCCccccccccccCCcccCCCCChhHHHHHHHHHHHHhh
Q 009121 191 E----SQS-SIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSF 240 (543)
Q Consensus 191 ~----~~P-DI~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~sF~~~f 240 (543)
+ .-+ .|.+.|-.|.- ||. .+.++.+.+++++
T Consensus 152 ~~~~~~Ga~~I~l~DT~G~~------------------~P~-~v~~lv~~l~~~~ 187 (378)
T PRK11858 152 KAAEEAGADRVRFCDTVGIL------------------DPF-TMYELVKELVEAV 187 (378)
T ss_pred HHHHhCCCCEEEEeccCCCC------------------CHH-HHHHHHHHHHHhc
Confidence 1 112 24555555433 564 4557777777765
No 236
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=20.99 E-value=80 Score=26.28 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=20.4
Q ss_pred CCCccchhhHHHHHHHHHHHHHH
Q 009121 331 SWESPYGDFFLSWYSSQLISHGN 353 (543)
Q Consensus 331 ~~~s~YGrFFL~WYs~~L~~Hgd 353 (543)
.|.+.+||-|++-|.+.|+.+..
T Consensus 2 kwltsfgra~iscyksllltqlr 24 (65)
T PF06336_consen 2 KWLTSFGRAFISCYKSLLLTQLR 24 (65)
T ss_pred chHHHHhHHHHHHHHHHHHHHHH
Confidence 49999999999999999988753
No 237
>PRK14705 glycogen branching enzyme; Provisional
Probab=20.99 E-value=1.6e+02 Score=36.92 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=37.1
Q ss_pred HHHHHH-HHHHHHcCcceEEeeeeeeccccCCCceeec-----------------hhHHHHHHHHHHcCCcEEEEEEe
Q 009121 113 KAIAAG-LKALKLLGVEGVELPVWWGVAEKEAMGKYNW-----------------SGYLAVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 113 ~~~~~~-L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKv~~vmsF 172 (543)
+.+... |..||++||+.|.+== +.| -|..++| ..++++++.++++||+| ||-+
T Consensus 765 ~~l~~~lldYlk~LGvt~IeLmP---v~e--~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V--ILD~ 835 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTHVEFMP---VAE--HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV--LLDW 835 (1224)
T ss_pred HHHHHHHHHHHHHhCCCEEEECc---ccc--CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 455555 6999999999997531 223 2333344 24899999999999999 6655
No 238
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=20.87 E-value=2.4e+02 Score=28.48 Aligned_cols=70 Identities=14% Similarity=0.314 Sum_probs=50.5
Q ss_pred cCcHHHHHHHHHHHHHc--CcceEEeeeeeeccccCCCcee--e-----chhHHHHHHHHHHcCCcEEEEEEeecCCCCC
Q 009121 109 VNHAKAIAAGLKALKLL--GVEGVELPVWWGVAEKEAMGKY--N-----WSGYLAVAEMVEKIGLKLHVSLCFHALKQPK 179 (543)
Q Consensus 109 ~~~~~~~~~~L~~LK~~--GVdGV~vdVWWGiVE~~~p~~Y--d-----Ws~Y~~l~~mv~~~GLKv~~vmsFHvgD~~~ 179 (543)
-.+.+.+..-.+.+++. -+|.|.+|.+|..- -+.+ + |.--+++++-+++.|+|+ ++..| +.
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~--~~~~~----P~ 89 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPNPKSMIDELHDNGVKL--VLWID----PY 89 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccC----CceeeeecChhhCCCHHHHHHHHHHCCCEE--EEEeC----hh
Confidence 35678888888999886 56899999999732 2333 3 445688999999999999 55554 22
Q ss_pred CCCChhchhhh
Q 009121 180 IPLPDWVSQIG 190 (543)
Q Consensus 180 IpLP~WV~~~g 190 (543)
| -.|..+.-
T Consensus 90 v--~~w~~~~~ 98 (265)
T cd06589 90 I--REWWAEVV 98 (265)
T ss_pred H--HHHHHHHH
Confidence 2 67877643
No 239
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.83 E-value=2.2e+02 Score=28.01 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeec----hhHHHHHHHHHHcCCcEEEEEEee
Q 009121 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW----SGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 113 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW----s~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+.+++-+...+.+|+..|. ++.|......+.+=.| +..+++++++++.|+++ .+-+|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~ 144 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTL--LIEPI 144 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEEC
Confidence 5677788889999999876 5666543211111112 45788999999999887 66654
No 240
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.80 E-value=1.4e+02 Score=31.02 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=38.3
Q ss_pred HHHHHHHcCcceEEeeeeeeccccCCCceeechhHH----HHHHHHHHcCCcEEEEEEe
Q 009121 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYL----AVAEMVEKIGLKLHVSLCF 172 (543)
Q Consensus 118 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~----~l~~mv~~~GLKv~~vmsF 172 (543)
.-..||++|+++|.|. +++++-.+.-=+ +-++.++++||+. |+|.
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~~~E~d~~i~~K~~aa~~~Gl~p--IlCv 128 (251)
T COG0149 80 SAEMLKDLGAKYVLIG--------HSERRLYFGETDELIAKKVKAAKEAGLTP--ILCV 128 (251)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccccchHHHHHHHHHHHHCCCeE--EEEc
Confidence 4567999999999985 677888888887 7788999999997 9997
No 241
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=20.75 E-value=2.2e+02 Score=30.51 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCcceEEeeeeeeccccCCC----------ceeechhHHHHHHHHHHcCCc-E
Q 009121 116 AAGLKALKLLGVEGVELPVWWGVAEKEAM----------GKYNWSGYLAVAEMVEKIGLK-L 166 (543)
Q Consensus 116 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p----------~~YdWs~Y~~l~~mv~~~GLK-v 166 (543)
..+++.||++||++|++.+ |.-.+ ...+|..-.+.++.++++|++ |
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 5667999999999999763 43222 245777778889999999996 6
No 242
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=20.67 E-value=3.5e+02 Score=27.87 Aligned_cols=49 Identities=10% Similarity=-0.028 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCceeechhHHHHHHHHHHcCCcEEEEEEee
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 173 (543)
+.+++++.++.||+ ++|-|.|+.=||... +-.+|++...=+|.+|+++|
T Consensus 126 P~~~~~~~v~~lk~-~~D~IIV~~H~g~ts-------------Ek~ala~~ldg~VdvIvGtH 174 (255)
T cd07382 126 PFRAADELLEELKE-EADIIFVDFHAEATS-------------EKIALGWYLDGRVSAVVGTH 174 (255)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEECCCCCH-------------HHHHHHHhCCCCceEEEeCC
Confidence 46779999999998 999999999997531 12334444443577799999
No 243
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=20.59 E-value=1.4e+02 Score=35.06 Aligned_cols=64 Identities=23% Similarity=0.488 Sum_probs=39.9
Q ss_pred HHHHH--HHHHHHHcCcceEEee-e----------------eeecccc---CCCcee----echhHHHHHHHHHHcCCcE
Q 009121 113 KAIAA--GLKALKLLGVEGVELP-V----------------WWGVAEK---EAMGKY----NWSGYLAVAEMVEKIGLKL 166 (543)
Q Consensus 113 ~~~~~--~L~~LK~~GVdGV~vd-V----------------WWGiVE~---~~p~~Y----dWs~Y~~l~~mv~~~GLKv 166 (543)
.++.. .|..||++||+.|.+- | .||.-=. .-+..| .-..+++|++.+++.||+|
T Consensus 182 ~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 182 AGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred HHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 34443 4899999999999652 2 2542100 001122 3456999999999999999
Q ss_pred EEEEEe-ecCC
Q 009121 167 HVSLCF-HALK 176 (543)
Q Consensus 167 ~~vmsF-HvgD 176 (543)
..=+-| |.++
T Consensus 262 IlDvV~NHt~~ 272 (688)
T TIGR02100 262 ILDVVYNHTAE 272 (688)
T ss_pred EEEECcCCccC
Confidence 444444 5443
No 244
>PLN03231 putative alpha-galactosidase; Provisional
Probab=20.47 E-value=97 Score=33.68 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=34.1
Q ss_pred HHHHHcCcceEEeeeeeecccc----------------CCCcee-----ech------hHHHHHHHHHHcCCcE
Q 009121 120 KALKLLGVEGVELPVWWGVAEK----------------EAMGKY-----NWS------GYLAVAEMVEKIGLKL 166 (543)
Q Consensus 120 ~~LK~~GVdGV~vdVWWGiVE~----------------~~p~~Y-----dWs------~Y~~l~~mv~~~GLKv 166 (543)
+-||.+|-+.|.||.-|-.-++ .+-|+. .|- |.+.|++.|++.|||+
T Consensus 29 ~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKf 102 (357)
T PLN03231 29 ETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKL 102 (357)
T ss_pred cchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcce
Confidence 3689999999999977753321 111222 232 8999999999999998
No 245
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=20.39 E-value=1.8e+02 Score=29.46 Aligned_cols=56 Identities=5% Similarity=0.071 Sum_probs=38.5
Q ss_pred HHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 009121 405 AVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 461 (543)
Q Consensus 405 ~Ia~mf~rh~~~l~FTClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL 461 (543)
.+++|+ .+|....++|+.-.--...---..--+.++..+....++.||.++|||.-
T Consensus 125 ~l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gid~~GEgGE 180 (222)
T TIGR00289 125 KLMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGIHLAFEGGE 180 (222)
T ss_pred HHHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 355665 78999999998643211100012223578889999999999999999975
No 246
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=20.27 E-value=90 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=27.0
Q ss_pred eecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 009121 420 PGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 457 (543)
Q Consensus 420 TClEM~d~e~p~~~~s~Pe~Lv~QV~~aa~~~Gv~~~G 457 (543)
+|||..-... + .+++.|-.++...+++.||.++=
T Consensus 49 ~~~e~~v~~~-~---~~~~~lr~~L~~la~elgvDIav 82 (84)
T cd04871 49 ACVEFSVRGQ-P---ADLEALRAALLELASELNVDIAF 82 (84)
T ss_pred EEEEEEEeCC-C---CCHHHHHHHHHHHhcccCceEEE
Confidence 4888765532 2 58899999999999999998864
No 247
>PRK08005 epimerase; Validated
Probab=20.24 E-value=1.1e+02 Score=30.78 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHcCcceEEeeeeeeccccCCCcee--echhHHHHHHHHHHcCCcEEEEEEee--cCCCCCCCCChhc
Q 009121 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY--NWSGYLAVAEMVEKIGLKLHVSLCFH--ALKQPKIPLPDWV 186 (543)
Q Consensus 111 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~GLKv~~vmsFH--vgD~~~IpLP~WV 186 (543)
|...++++|++|+++|+|-+++||= +|+| |.+-=-..++.+++.- ++ -+-.| |-+ +=.|+
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvM--------DG~FVPN~tfG~~~i~~l~~~t-~~--~~DvHLMv~~-----P~~~i 74 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIE--------DTSFINNITFGMKTIQAVAQQT-RH--PLSFHLMVSS-----PQRWL 74 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecc--------CCCcCCccccCHHHHHHHHhcC-CC--CeEEEeccCC-----HHHHH
Confidence 5678999999999999999999984 3333 3343344555555542 11 24555 322 12255
Q ss_pred hhhhccCCCeeeec
Q 009121 187 SQIGESQSSIFYTD 200 (543)
Q Consensus 187 ~~~g~~~PDI~ytD 200 (543)
.+-.+..+|+....
T Consensus 75 ~~~~~~gad~It~H 88 (210)
T PRK08005 75 PWLAAIRPGWIFIH 88 (210)
T ss_pred HHHHHhCCCEEEEc
Confidence 44445555554443
Done!