BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009124
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 129/266 (48%), Gaps = 13/266 (4%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVI 97
+ KAT H K+KH+ + ++ +L +R + + V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNSSWVVVFKSLITT 89
Query: 98 HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+ +
Sbjct: 90 HHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 158 RVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLAL 212
R + +D T R D ++T + +L + N VI A
Sbjct: 146 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 204
Query: 213 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V + +
Sbjct: 205 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 264
Query: 273 DIGRGERFIKIEQPPASFLQAMEEYV 298
I RG+ + Q P+S L A+E+++
Sbjct: 265 GIDRGD-IPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 129/266 (48%), Gaps = 13/266 (4%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVI 97
+ KAT H K+KH+ + ++ +L +R + + V K+LI
Sbjct: 25 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNSSWVVVFKSLITT 82
Query: 98 HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+ +
Sbjct: 83 HHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 138
Query: 158 RVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLAL 212
R + +D T R D ++T + +L + N VI A
Sbjct: 139 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 197
Query: 213 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V + +
Sbjct: 198 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 257
Query: 273 DIGRGERFIKIEQPPASFLQAMEEYV 298
I RG+ + Q P+S L A+E+++
Sbjct: 258 GIDRGD-IPDLSQAPSSLLDALEQHL 282
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 12/246 (4%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVI 97
+ KAT H K+KH+ + ++ +L +R + + V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNSSWVVVFKSLITT 89
Query: 98 HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+ +
Sbjct: 90 HHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 158 RVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLAL 212
R + +D T R D ++T + +L + N VI A
Sbjct: 146 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 204
Query: 213 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V + +
Sbjct: 205 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 264
Query: 273 DIGRGE 278
I RG+
Sbjct: 265 GIDRGD 270
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 12/246 (4%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVI 97
+ KAT H K+KH+ + ++ +L +R + + V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNSSWVVVFKSLITT 89
Query: 98 HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+ +
Sbjct: 90 HHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 158 RVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLAL 212
R + +D T R D ++T + +L + N VI A
Sbjct: 146 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 204
Query: 213 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V + +
Sbjct: 205 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 264
Query: 273 DIGRGE 278
I RG+
Sbjct: 265 GIDRGD 270
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 128/280 (45%), Gaps = 29/280 (10%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVAL-KTLIV 96
++ KAT K+KH+ + A P + + + L +R S+ NWV + K+LI
Sbjct: 27 SVCKATTEECIGPKKKHLDYLVHC--ANEPNVSIPHLANLLIER-SQNANWVVVYKSLIT 83
Query: 97 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPN-----------AWDYSAWVRS 145
H + +E + Y S + N++ F D + +D S ++R
Sbjct: 84 THHLM----AYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRR 139
Query: 146 YALFLEERLECFRVLKYDI-------ETDRPRTKDLDTAEXXXXXXXXXXXXFRVLGCQP 198
YA +L E+ +R + +D E R+ + + CQ
Sbjct: 140 YAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQS 199
Query: 199 QGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ 258
+ N VI ++ L+ + +++ +DG +NL++K+F+M + A ALD+Y++ +
Sbjct: 200 ND--LSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVR 257
Query: 259 AERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYV 298
+R+ EF +V +++ I +G+ + + P+S L A+E+++
Sbjct: 258 MDRVGEFLKVAENVGIDKGD-IPDLTKAPSSLLDALEQHL 296
>pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
That Plays A Critical Role In Gyrase Function
Length = 420
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 252 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRK 309
YRR E+L E + I RGER QP ASF QA++ VKE+ RG + ++
Sbjct: 303 YRRICTLGEKLRGLLE--EDAFIERGER----RQPVASFEQALDWLVKESRRGLSIQR 354
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|B Chain B, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|C Chain C, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|D Chain D, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
Length = 171
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTL 94
L+ + KATN R ++I I+ +A + LA ++ W AL+ L
Sbjct: 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIA--VRLLAHKIQSPQEWEALQAL 71
Query: 95 IVIHRALREVDPTFHEEV 112
V+ ++ FH EV
Sbjct: 72 TVLEACMKNCGRRFHNEV 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,669,418
Number of Sequences: 62578
Number of extensions: 485973
Number of successful extensions: 1126
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 9
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)