Query 009124
Match_columns 543
No_of_seqs 211 out of 509
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 20:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 1.6E-88 3.5E-93 729.1 32.0 445 12-479 1-473 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 5.2E-66 1.1E-70 521.9 21.9 262 33-300 2-279 (280)
3 KOG0980 Actin-binding protein 100.0 2E-42 4.3E-47 381.2 17.1 252 32-299 4-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 1.1E-31 2.4E-36 240.3 11.7 116 35-157 1-117 (117)
5 smart00273 ENTH Epsin N-termin 99.9 4.3E-28 9.3E-33 219.6 10.2 125 33-163 1-126 (127)
6 PF01417 ENTH: ENTH domain; I 99.3 1.9E-11 4.1E-16 110.7 10.5 116 32-154 1-119 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.1 6.2E-10 1.4E-14 99.0 10.0 110 36-153 2-112 (115)
8 cd03571 ENTH_epsin ENTH domain 98.9 7.7E-09 1.7E-13 94.2 10.0 113 35-154 2-116 (123)
9 KOG2056 Equilibrative nucleosi 98.2 3.9E-06 8.4E-11 87.7 8.2 115 31-152 18-134 (336)
10 cd03572 ENTH_epsin_related ENT 97.9 5.2E-05 1.1E-09 69.1 8.3 109 38-152 5-115 (122)
11 KOG2057 Predicted equilibrativ 96.4 0.0062 1.4E-07 63.5 6.6 115 31-150 20-137 (499)
12 PF00790 VHS: VHS domain; Int 94.7 0.15 3.3E-06 47.1 8.2 78 32-112 3-81 (140)
13 cd03568 VHS_STAM VHS domain fa 94.5 0.16 3.5E-06 47.6 8.0 75 35-112 1-76 (144)
14 cd03569 VHS_Hrs_Vps27p VHS dom 94.4 0.22 4.7E-06 46.6 8.7 77 33-112 3-80 (142)
15 cd03567 VHS_GGA VHS domain fam 94.2 0.26 5.7E-06 46.0 8.7 75 35-112 2-77 (139)
16 cd03565 VHS_Tom1 VHS domain fa 94.1 0.29 6.3E-06 45.7 8.7 76 35-112 2-78 (141)
17 smart00288 VHS Domain present 93.5 0.34 7.5E-06 44.6 8.0 74 36-112 2-76 (133)
18 cd03561 VHS VHS domain family; 93.2 0.43 9.3E-06 43.8 8.2 74 36-112 2-76 (133)
19 KOG2199 Signal transducing ada 78.3 9.2 0.0002 41.7 8.3 78 32-112 6-84 (462)
20 KOG0414 Chromosome condensatio 63.9 1.1E+02 0.0023 37.9 13.5 171 74-275 360-574 (1251)
21 KOG1087 Cytosolic sorting prot 54.0 48 0.001 37.2 8.1 75 35-111 2-76 (470)
22 KOG1086 Cytosolic sorting prot 43.9 61 0.0013 36.0 6.7 82 32-115 6-87 (594)
23 KOG2675 Adenylate cyclase-asso 39.2 5.7E+02 0.012 28.7 13.1 32 242-273 101-132 (480)
24 PF07990 NABP: Nucleic acid bi 39.0 97 0.0021 33.9 7.3 38 466-504 247-284 (385)
25 PF02042 RWP-RK: RWP-RK domain 34.5 41 0.00088 26.5 2.7 35 233-276 9-43 (52)
26 KOG3520 Predicted guanine nucl 31.9 1.6E+02 0.0036 36.4 8.4 70 207-282 447-530 (1167)
27 PF02184 HAT: HAT (Half-A-TPR) 28.6 44 0.00096 23.9 1.8 26 245-270 3-28 (32)
28 KOG1915 Cell cycle control pro 27.6 65 0.0014 36.4 3.8 66 176-270 150-215 (677)
29 KOG1465 Translation initiation 26.8 6.9E+02 0.015 26.9 10.9 77 71-154 11-88 (353)
30 KOG4368 Predicted RNA binding 21.9 2.4E+02 0.0052 32.6 6.9 12 511-522 306-317 (757)
31 KOG2049 Translational represso 21.0 7E+02 0.015 28.7 10.4 25 93-117 376-400 (536)
32 COG0703 AroK Shikimate kinase 20.8 2.2E+02 0.0047 27.8 5.6 115 21-160 16-144 (172)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-88 Score=729.14 Aligned_cols=445 Identities=39% Similarity=0.632 Sum_probs=346.8
Q ss_pred HHHhhhcccccchhhcccCCChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HH
Q 009124 12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VA 90 (543)
Q Consensus 12 ka~GalKD~tsiglAkv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-Va 90 (543)
+++|++||++|+|+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+.++ +++++|+++|++||++|||| ||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 4789999999999999998889999999999999999999999999999999875 89999999999999999999 99
Q ss_pred HHHHHHHHHHHhhCCcccHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccccCCC-
Q 009124 91 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP- 169 (543)
Q Consensus 91 lKtLIllHrLLreG~p~f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~e~~- 169 (543)
+|+||||||||++|+++|.+++.++ .++|+|++|+|++++.+|||++|||+|++||+||++||+.+++|++..+.
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~ 154 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG 154 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 9999999999999999999887543 36899999999999999999999999999999999999999999986532
Q ss_pred ----CCCCCC-hHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q 009124 170 ----RTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD 244 (543)
Q Consensus 170 ----~~~~l~-~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~D 244 (543)
..+++. .+.+|+.+++||.||+++|+|+|.+.+++|.+|++||.+||+|||+||++||+||+||||+||+|+++|
T Consensus 155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~ 234 (491)
T KOG0251|consen 155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD 234 (491)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 445566 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHhCCCCCCCC-CCcccCC---CCCCc
Q 009124 245 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR-KDQTVDN---KVDAP 320 (543)
Q Consensus 245 a~kal~IYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrda~~~~~~~-~~~~~~~---~~~~~ 320 (543)
|+++|+|||||.+|+++|.+||++||++|+.|+++||+|+++|.++|++|||||++.+..+... ....... +....
T Consensus 235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
T KOG0251|consen 235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFSTDFESS 314 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccccchhcc
Confidence 9999999999999999999999999999999999999999999999999999999976332211 0000000 00000
Q ss_pred cc------c-c--c-ccCCCCCCccCCCCCCCCCCCCCCCCCC--CCCCCCcCCCCCCCCccchhhhhcccccccccCCC
Q 009124 321 KE------M-M--A-IEYKKTPEVEEAKPPSPPPPEPVKVEAP--VVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQ 388 (543)
Q Consensus 321 ~~------~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dll~l~~~~~~~~~~~~~~~lala~~~~~~ 388 (543)
+. . + . ++..+.+.+..+. .+.+.++++.+.+ .+.++|++.+.+..+..++.+..|+||||+ .+ .
T Consensus 315 e~~~~~~~~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~ 390 (491)
T KOG0251|consen 315 ESSSRLEEPEEQKEVIEELQEPLEQEED--QPSPNSENPEANDQAGIATDDLLLQPDNLPMFSASTAPNALALAL-PF-P 390 (491)
T ss_pred ccccccccchhhhhcccccccccccccc--CCCCCCCCccccccccccCcchhhcccCCCccccccCcchhhcCC-CC-C
Confidence 00 0 0 0 1222211111110 1111111111111 123345666666677899999999999998 32 1
Q ss_pred CCCCCCCCCCCCCcceeeeccCCCCCchhhhhhhhcCCcchhhhhhhhhHHHHHhhcc---CCCCCC--CCCCCCCCCCC
Q 009124 389 PTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQN---ASYSTW--GPQPIAGPTMQ 463 (543)
Q Consensus 389 ~~~~~~~~~~~~~~wElalV~~~s~~~~~~~~~~l~gg~d~l~Ld~~y~~~~~~~~~~---~~~g~~--~~~p~~~~~~~ 463 (543)
....++||+++|+..++.....+..++|||| +||||| ++.+|+.+. +++|++ ...|. ..+.-
T Consensus 391 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 457 (491)
T KOG0251|consen 391 --------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPFGAQPM-PAMAA 457 (491)
T ss_pred --------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCccccCCc-hhhhc
Confidence 3456788888888666533221112899999 999999 777776542 334532 11221 11111
Q ss_pred CCCCCccccccCCCCC
Q 009124 464 PNGHDPFYASGMVSAP 479 (543)
Q Consensus 464 ~~~~dpFaaS~~v~pp 479 (543)
..+.+||..|..+++|
T Consensus 458 ~~~~~~~~~~~~~a~~ 473 (491)
T KOG0251|consen 458 LPQPYPVGQPPFPAQL 473 (491)
T ss_pred ccccCCCCCCCCcCcc
Confidence 2233777777777776
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=5.2e-66 Score=521.88 Aligned_cols=262 Identities=45% Similarity=0.800 Sum_probs=215.6
Q ss_pred hhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHH
Q 009124 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 33 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~ee 111 (543)
+++++||+|||+|+++|||+||||+||.+|+. + .+++.|+|+|++|+++++|| ||||+||++|||||||||.|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~--~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-P--ESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-T--S-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-C--ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 58999999999999999999999999999998 3 77899999999999999999 99999999999999999999999
Q ss_pred HHHhhhcCCCcccccccCC--CCCCCCCchhHHHHHHHHHHHHHHHHhhhcccc---cccCCC---------CC-CCCCh
Q 009124 112 VINYGRSRSHMLNMAHFKD--DSSPNAWDYSAWVRSYALFLEERLECFRVLKYD---IETDRP---------RT-KDLDT 176 (543)
Q Consensus 112 ll~y~~sr~~iL~Ls~F~D--~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d---~~~e~~---------~~-~~l~~ 176 (543)
++++. .++++++++|+ ++++.+|+|+.|||+|++||++|+.||++++.+ ++.+.. .. ..+++
T Consensus 79 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (280)
T PF07651_consen 79 LLRYN---RRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDI 155 (280)
T ss_dssp HHHTT--------TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--H
T ss_pred HHHcc---cchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccH
Confidence 87763 34666666666 677889999999999999999999999999887 544321 22 37778
Q ss_pred HHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 009124 177 AELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAG 256 (543)
Q Consensus 177 ~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kal~IYkRf~ 256 (543)
+++|+.++.||++|+++++|+|.+.+++|+|+++||++||+||++||+++|+||++|+|+||+|++.||.++++||+||.
T Consensus 156 ~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~ 235 (280)
T PF07651_consen 156 DDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFA 235 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009124 257 QQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 300 (543)
Q Consensus 257 kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd 300 (543)
+|+++|++||++||+++++++++||+|+++|++|+.+||||+||
T Consensus 236 ~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 236 KQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999989999999999999999999997
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=2e-42 Score=381.17 Aligned_cols=252 Identities=20% Similarity=0.300 Sum_probs=218.1
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHH
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHE 110 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~e 110 (543)
..++.+||.|||+.+|+|||+||||.||.+||++++ +.+||...+|++..++. .+||+||||||+||||||++.+
T Consensus 4 d~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~ 79 (980)
T KOG0980|consen 4 DRAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALE 79 (980)
T ss_pred hHHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhH
Confidence 357889999999999999999999999999999985 45799999999999999 8999999999999999999999
Q ss_pred HHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhccc-----cccc--------CCCCCCCCCh-
Q 009124 111 EVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY-----DIET--------DRPRTKDLDT- 176 (543)
Q Consensus 111 ell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~-----d~~~--------e~~~~~~l~~- 176 (543)
|..+| ++++..|+.+|++-+ .|||.+||.|++||..|+.||.+++. ++.. +..+..++++
T Consensus 80 es~r~---r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvd 153 (980)
T KOG0980|consen 80 ESQRY---KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVD 153 (980)
T ss_pred HHHHH---HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHH
Confidence 99888 778999999998754 68999999999999999999998753 2211 1114445555
Q ss_pred -HHHHhhHHHHHHHHHHHHcC-ccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009124 177 -AELLEHLPALQLLLFRVLGC-QPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRR 254 (543)
Q Consensus 177 -~~LL~~L~~LQ~Lld~lL~c-rp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kal~IYkR 254 (543)
.+++|.+..||+.||+.++. |..+...+|+|++++|++||.||+.||++++.+|.+|..- + .+|++.+|+ .|
T Consensus 154 mmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkLHs~---v-p~dtLeghR--dR 227 (980)
T KOG0980|consen 154 MMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKLHSQ---V-PPDTLEGHR--DR 227 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHHHcC---C-CHHHhhhHH--HH
Confidence 36777888999999999986 4455567999999999999999999999999955444331 1 499999999 99
Q ss_pred HHHHHHHHHHHHHHhhhcccccC-ccccCCCCCChhhHH--HHHHHHH
Q 009124 255 AGQQAERLSEFYEVCKSLDIGRG-ERFIKIEQPPASFLQ--AMEEYVK 299 (543)
Q Consensus 255 f~kQ~e~L~~Fy~~ck~l~~~r~-~~iP~L~~~P~~~L~--~LEEylr 299 (543)
|..||.+|++||..|+++.|++. ++||.||.-||+|+. .+++|+.
T Consensus 228 f~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 228 FHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 99999999999999999999987 699999999999988 6999887
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.97 E-value=1.1e-31 Score=240.26 Aligned_cols=116 Identities=43% Similarity=0.724 Sum_probs=107.0
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEVI 113 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eell 113 (543)
+++||+|||+|+++|||+|||++||.+|++++ .++.+|+++|.+|+.. +|| |+||+|||||+|||+|+|.|.++.+
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 47899999999999999999999999998854 7899999999999987 999 9999999999999999999998876
Q ss_pred HhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 009124 114 NYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 157 (543)
Q Consensus 114 ~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~ 157 (543)
.+ ..+|++++|.|.+++.+|||+.|||.|++||++|++||
T Consensus 78 ~~----~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 SR----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred Hc----cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 44 46899999999887788999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=4.3e-28 Score=219.65 Aligned_cols=125 Identities=35% Similarity=0.522 Sum_probs=111.7
Q ss_pred hhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHH
Q 009124 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 33 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~ee 111 (543)
++++++|+|||||++.|||+||+++|+.+|+.++ .++..|+..|.+||..+++| |++|+|+|||+||++|++.+..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999999999999999999999874 67899999999999988899 99999999999999999988766
Q ss_pred HHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhcccc
Q 009124 112 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYD 163 (543)
Q Consensus 112 ll~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d 163 (543)
...+ +..+++|++|++. ++.+||++.|||.|++||++|+.+++.++.+
T Consensus 79 ~~~~---~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~e 126 (127)
T smart00273 79 ALRN---RNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKEE 126 (127)
T ss_pred HHHh---hHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhcc
Confidence 6433 3468999999986 4678999999999999999999999887643
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.28 E-value=1.9e-11 Score=110.72 Aligned_cols=116 Identities=23% Similarity=0.278 Sum_probs=90.7
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhh--ccCCch-HHHHHHHHHHHHHhhCCccc
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL--SKTHNW-VALKTLIVIHRALREVDPTF 108 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL--~kT~nW-ValKtLIllHrLLreG~p~f 108 (543)
++++++-|.+||+.++.+|..+++.+|...|+.+ .+...++..|.+|| .+.++| +++|+|.+||.||+.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 4688999999999999999999999999999886 35667888899999 456999 99999999999999999999
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHH
Q 009124 109 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 154 (543)
Q Consensus 109 ~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 154 (543)
..++..+.. .+-.|.+|+- .++.+.+++.-||..|+-|.+-|
T Consensus 78 ~~~~~~~~~---~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 78 VDELRDHID---IIRELQDFQY-VDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HHHHHHTHH---HHHGGGG----BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHhhcceeec-cCCCCccHHHHHHHHHHHHHHHh
Confidence 887754422 3667788865 23356788899999999887655
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.08 E-value=6.2e-10 Score=99.04 Aligned_cols=110 Identities=25% Similarity=0.292 Sum_probs=88.4
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHHHH
Q 009124 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEVIN 114 (543)
Q Consensus 36 ~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eell~ 114 (543)
++.|.|||+++...|+.+++.+|...+.... .....++.+|.+||.. ++| |++|+|.|+|.|+..|++.|..++.
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~--~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i~- 77 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETN--VGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEVA- 77 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCC--ccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHHH-
Confidence 5789999999999999999999999997652 5678899999999965 699 9999999999999999998876653
Q ss_pred hhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHH
Q 009124 115 YGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEER 153 (543)
Q Consensus 115 y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeR 153 (543)
++..+.++.+| +.....+.+.+..||.++++|.+.
T Consensus 78 ---~~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 78 ---SNDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ---HhHHHHHHHHh-hccccccCCCChHHHHHHHHHHHH
Confidence 23334555555 222234456789999999999764
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=98.90 E-value=7.7e-09 Score=94.17 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccC-Cch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT-HNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT-~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
.++-|..|||.++.+|..+++.+|..+|++. .++..++..|-+||... ++| +++|+|+||+.||+.|++.|..++
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5778899999999999999999999999875 45678899999999754 899 999999999999999999887776
Q ss_pred HHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHH
Q 009124 113 INYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 154 (543)
Q Consensus 113 l~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 154 (543)
..++. .+-.|.+|.=- ...+.|.+.-||.=|+-|-+-|
T Consensus 79 r~~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 79 RENLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHhHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 44322 24445666421 1234578889998777665433
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.19 E-value=3.9e-06 Score=87.75 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=88.0
Q ss_pred CChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccC-Cch-HHHHHHHHHHHHHhhCCccc
Q 009124 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT-HNW-VALKTLIVIHRALREVDPTF 108 (543)
Q Consensus 31 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT-~nW-ValKtLIllHrLLreG~p~f 108 (543)
.+++.++.|.-||+.+...|.-+++-+|-.+|+.. ..+..++..|.||+.++ ++| +++|+|.||-.||..|+..|
T Consensus 18 ~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv 94 (336)
T KOG2056|consen 18 NYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERV 94 (336)
T ss_pred cchHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHH
Confidence 38899999999999999999999999999999986 56788999999999864 899 99999999999999999877
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHH
Q 009124 109 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEE 152 (543)
Q Consensus 109 ~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLde 152 (543)
.+++-..+- .|--|..|.-- ...+.|.+..||.=++=|..
T Consensus 95 ~~~~ren~~---~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~~ 134 (336)
T KOG2056|consen 95 VDETRENIY---TIETLKDFQYI-DEDGKDQGLNVRKKAKELLS 134 (336)
T ss_pred HHHHHhhhH---HHHHHhhceee-CCCCccchHHHHHHHHHHHH
Confidence 665522211 12233444311 11245677778876665543
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=97.88 E-value=5.2e-05 Score=69.14 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHHHHhh
Q 009124 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEVINYG 116 (543)
Q Consensus 38 AIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eell~y~ 116 (543)
.|.+||+.++.||--=-.++|...|+.+. ..+..++..|.+||.+ ++. |-+|+|-+|-.|++.|++.|+.++.+.+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 57899999997776666668999998853 5677888999999975 667 8899999999999999999877665443
Q ss_pred hcCCCcccccccCCCCCC-CCCchhHHHHHHHHHHHH
Q 009124 117 RSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEE 152 (543)
Q Consensus 117 ~sr~~iL~Ls~F~D~ss~-~s~d~safVR~Ya~YLde 152 (543)
. .+-.+.+|+..-.+ .+++.+..||.=|+=|-.
T Consensus 82 ~---~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 82 A---QIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred H---HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 2 36677788764444 567888999987765543
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0062 Score=63.52 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=86.5
Q ss_pred CChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhcc--CCch-HHHHHHHHHHHHHhhCCcc
Q 009124 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK--THNW-VALKTLIVIHRALREVDPT 107 (543)
Q Consensus 31 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~k--T~nW-ValKtLIllHrLLreG~p~ 107 (543)
++++.+.-|.-|||.+...|.--.+.+|--+|.... ..++..++..|..|+-+ ..+| -++|.||++..||+.|...
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 489999999999999999999999999999997522 14677888889899864 3689 9999999999999999998
Q ss_pred cHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHH
Q 009124 108 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 150 (543)
Q Consensus 108 f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YL 150 (543)
|+++...++- .-+-|.--+|-|.. +-|.+-.||.-.+-|
T Consensus 99 ~VqeAREh~Y-dLR~LEnYhfiDEh---GKDQGINIR~kVKei 137 (499)
T KOG2057|consen 99 FVQEAREHAY-DLRRLENYHFIDEH---GKDQGINIRHKVKEI 137 (499)
T ss_pred HHHHHHHHHH-HHHhhhhccchhhh---CccccccHHHHHHHH
Confidence 8877643322 10112223566653 346677788777666
No 12
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=94.66 E-value=0.15 Score=47.09 Aligned_cols=78 Identities=26% Similarity=0.284 Sum_probs=62.6
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHH
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHE 110 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~e 110 (543)
...++..|.|||++...-|+--.+-.|.-...... .....++.+|.+||.. ++. |.+-+|.|+.-|+..+.+.|..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~--~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSP--DGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST--THHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35789999999999988888887777777776652 4567889999999965 788 9999999999999999888876
Q ss_pred HH
Q 009124 111 EV 112 (543)
Q Consensus 111 el 112 (543)
++
T Consensus 80 ev 81 (140)
T PF00790_consen 80 EV 81 (140)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.53 E-value=0.16 Score=47.64 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
+|..|.|||+....-|+--.+=.|--..... + .....++.+|.+||. .+|. |++.+|.|+--|+..+...|..|+
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~-~-~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSD-E-NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3678999999998888888888777666654 2 456889999999996 5788 999999999999999988887766
No 14
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.45 E-value=0.22 Score=46.60 Aligned_cols=77 Identities=29% Similarity=0.402 Sum_probs=64.2
Q ss_pred hhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHH
Q 009124 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 33 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~ee 111 (543)
+.++..|.|||+....-|+--.+-+|.-...... .....++.+|-+||. .+|. |++-+|.++.-++..+...|..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5689999999999888888888888777776543 456789999999995 5889 99999999999999977777666
Q ss_pred H
Q 009124 112 V 112 (543)
Q Consensus 112 l 112 (543)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 5
No 15
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.19 E-value=0.26 Score=46.00 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
++..|.|||+....-|+--++-+|.-..... + .....++.+|.+||. .+|. |++-+|.++--|+..+...|..++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6888999999999989999998888777654 3 345788999999996 6789 999999999999998888887666
No 16
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.08 E-value=0.29 Score=45.70 Aligned_cols=76 Identities=24% Similarity=0.234 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
++..|.|||+....-|+--.+=+|--...... .....++.+|.+||...+|- |++-+|.++--|+..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETE--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 46789999999988888888888777665432 45688999999999756788 999999999999999988887766
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.51 E-value=0.34 Score=44.57 Aligned_cols=74 Identities=27% Similarity=0.273 Sum_probs=61.3
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 36 ~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
+..|.|||+....-|+--.+-+|.-...... .....++.+|.+||. .+|. |++.+|.++--++..+...|..++
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~--~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTP--DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5679999999988888888888777776552 456788999999996 5677 999999999999999877787665
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.22 E-value=0.43 Score=43.80 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=60.9
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 36 ~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
+..|.|||+....-|+-.-+-+|.-...... .....++.+|-+||. .+|. |++.+|.++--|+..+...|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 5679999998877788888888777776552 456789999999996 4688 999999999999999988776655
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.30 E-value=9.2 Score=41.66 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=58.3
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHH
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHE 110 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~e 110 (543)
..-++..|.|||+...+-=+=.+|=.+--..... |. .-..|+.+|.|||. +++. |++-+|-|+--|.......|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~~-~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-PD-GGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-Cc-ccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4568889999999887755555554444333333 32 23789999999995 6899 9999999999999887777777
Q ss_pred HH
Q 009124 111 EV 112 (543)
Q Consensus 111 el 112 (543)
|+
T Consensus 83 EV 84 (462)
T KOG2199|consen 83 EV 84 (462)
T ss_pred HH
Confidence 76
No 20
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.91 E-value=1.1e+02 Score=37.95 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=96.8
Q ss_pred HHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCc--ccHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHH
Q 009124 74 CIHALAKRLSKTHNW-VALKTLIVIHRALREVDP--TFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 150 (543)
Q Consensus 74 ~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p--~f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YL 150 (543)
++..|..|+.. -+. |=.|.|-+.||+.+.-.- .++.+++.-. .+..-|+ |..||.||-=|
T Consensus 360 ~le~l~erl~D-vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la--------~grl~Dk--------SslVRk~Ai~L 422 (1251)
T KOG0414|consen 360 LLELLRERLLD-VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELA--------IGRLEDK--------SSLVRKNAIQL 422 (1251)
T ss_pred HHHHHHHHhhc-ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHH--------hcccccc--------cHHHHHHHHHH
Confidence 67778888864 455 999999999999887542 2334443221 1222233 57899998877
Q ss_pred HHHHHHhh----hccccc-----cc-------CCC-----------CCCCCChHHHHhhHHHHH----HHHHHHHcCccC
Q 009124 151 EERLECFR----VLKYDI-----ET-------DRP-----------RTKDLDTAELLEHLPALQ----LLLFRVLGCQPQ 199 (543)
Q Consensus 151 deRL~~~r----~~~~d~-----~~-------e~~-----------~~~~l~~~~LL~~L~~LQ----~Lld~lL~crp~ 199 (543)
...+.-.. +++.|. +. +-. -.+......+++..+.-. .+......|.+.
T Consensus 423 l~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e 502 (1251)
T KOG0414|consen 423 LSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEE 502 (1251)
T ss_pred HHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchh
Confidence 66655421 122111 00 000 011111122333333222 111111222110
Q ss_pred ---------CCCccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009124 200 ---------GAAVHNFVI-QLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVC 269 (543)
Q Consensus 200 ---------g~a~~N~~v-l~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kal~IYkRf~kQ~e~L~~Fy~~c 269 (543)
.....|+++ +-+++.-++|.+.+-+.+.+++-.|+..+|.=...|..++.+ ||-.|
T Consensus 503 ~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Id--------------fl~~c 568 (1251)
T KOG0414|consen 503 HCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAID--------------FLVRC 568 (1251)
T ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH--------------HHHHH
Confidence 111233333 346777779999999999999999999999888888777765 66667
Q ss_pred hhcccc
Q 009124 270 KSLDIG 275 (543)
Q Consensus 270 k~l~~~ 275 (543)
+..|+.
T Consensus 569 ~~F~I~ 574 (1251)
T KOG0414|consen 569 KQFGID 574 (1251)
T ss_pred HHhCCC
Confidence 766653
No 21
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.01 E-value=48 Score=37.17 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCchHHHHHHHHHHHHHhhCCcccHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nWValKtLIllHrLLreG~p~f~ee 111 (543)
+.+.|-|||+..-.-|+=-..=+|--...... ......+++|.|||..-.+||++=+|.||--|+..-...|..+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~ 76 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQ 76 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45789999999877777654444333332221 2235779999999976555699999999988887655455433
No 22
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.94 E-value=61 Score=36.03 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=60.7
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCchHHHHHHHHHHHHHhhCCcccHHH
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nWValKtLIllHrLLreG~p~f~ee 111 (543)
...|+.=|.|||+....--+=|+|.-++--.... + .+-.-.+|.|+.+++...-|=|+-+|-++..+++.|...|.+|
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkd-p-~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~e 83 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKD-P-EGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEE 83 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcC-C-CCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3568888999999887444446666655544433 2 2223457889999988888899999999999999998888888
Q ss_pred HHHh
Q 009124 112 VINY 115 (543)
Q Consensus 112 ll~y 115 (543)
+-+|
T Consensus 84 vgkf 87 (594)
T KOG1086|consen 84 VGKF 87 (594)
T ss_pred HHHH
Confidence 7544
No 23
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=39.20 E-value=5.7e+02 Score=28.69 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009124 242 RHDALKALDIYRRAGQQAERLSEFYEVCKSLD 273 (543)
Q Consensus 242 ~~Da~kal~IYkRf~kQ~e~L~~Fy~~ck~l~ 273 (543)
++|..+..+..+.+..+.-++..|=+.=|...
T Consensus 101 KPds~elad~LkPI~e~i~eI~~fkE~nRkS~ 132 (480)
T KOG2675|consen 101 KPDSNELADLLKPINEEIGEINNFKEKNRKSP 132 (480)
T ss_pred CCChHHHHHHhhhHHHhhhHHhhhhhcccCch
Confidence 56777777777888887777777655544333
No 24
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=39.04 E-value=97 Score=33.92 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 009124 466 GHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQM 504 (543)
Q Consensus 466 ~~dpFaaS~~v~pp~~vqma~m~~~~~~~~~~q~~~q~~ 504 (543)
..||+...+.+ =.+|.=+-.+++-.=.-+++||.+|..
T Consensus 247 ~~dP~~~R~~~-G~s~~dl~~~qKayl~~lL~~QK~Qy~ 284 (385)
T PF07990_consen 247 QNDPSVDRNYM-GSSYMDLLGLQKAYLEALLAQQKSQYG 284 (385)
T ss_pred cCCcccccCCc-CccccchHHHHHHHHHHHHHHHHHhhC
Confidence 45999988866 555544444444433345566655654
No 25
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=34.50 E-value=41 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=25.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009124 233 LVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGR 276 (543)
Q Consensus 233 LLe~fFeM~~~Da~kal~IYkRf~kQ~e~L~~Fy~~ck~l~~~r 276 (543)
-|..||.|+..||.+.|.|-....| ..|+.+|+.|
T Consensus 9 ~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~R 43 (52)
T PF02042_consen 9 DLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIPR 43 (52)
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCCC
Confidence 3567999999999998886444333 4689888643
No 26
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=31.86 E-value=1.6e+02 Score=36.45 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhc
Q 009124 207 VIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ--------------AERLSEFYEVCKSL 272 (543)
Q Consensus 207 ~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kal~IYkRf~kQ--------------~e~L~~Fy~~ck~l 272 (543)
+-..+|....+|+.-||+.|-| ||..+|+-.-.++++ ++|-+||.+ =.++..|+..|.+-
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~ae~L~--~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~ 520 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGD----LLLDQFSGENAERLK--KTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN 520 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHH----HHHHHcCchHHHHHH--HHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence 4456777777888777777666 445577776544433 455666553 34455677666555
Q ss_pred ccccCccccC
Q 009124 273 DIGRGERFIK 282 (543)
Q Consensus 273 ~~~r~~~iP~ 282 (543)
-++|..++|+
T Consensus 521 p~cRRL~lkd 530 (1167)
T KOG3520|consen 521 PVCRRLGLKD 530 (1167)
T ss_pred hHHHhhcchH
Confidence 5566555443
No 27
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.56 E-value=44 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009124 245 ALKALDIYRRAGQQAERLSEFYEVCK 270 (543)
Q Consensus 245 a~kal~IYkRf~kQ~e~L~~Fy~~ck 270 (543)
-.+|=.||.||...+-.++.+.++|+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34566799999999999999988886
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.58 E-value=65 Score=36.42 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=42.2
Q ss_pred hHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 009124 176 TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRA 255 (543)
Q Consensus 176 ~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kal~IYkRf 255 (543)
.+++|..+.-..++..+-+.+.|...+=...+ =||+-+.+-.++-.||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI-----------------------------~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFI-----------------------------KFELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHH-----------------------------HHHHHhhHHHHHHHHHHHH
Confidence 35778888888888888888887543322111 1555555556666667777
Q ss_pred HHHHHHHHHHHHHhh
Q 009124 256 GQQAERLSEFYEVCK 270 (543)
Q Consensus 256 ~kQ~e~L~~Fy~~ck 270 (543)
+-.+-+++.|..++|
T Consensus 201 V~~HP~v~~wikyar 215 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYAR 215 (677)
T ss_pred heecccHHHHHHHHH
Confidence 666666666666665
No 29
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=26.82 E-value=6.9e+02 Score=26.89 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHH
Q 009124 71 VAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALF 149 (543)
Q Consensus 71 v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~Y 149 (543)
+.++|.+|-+|+.. .+. +|.+||-++-++|-.-..+-..+++.-+|..+..| ....+....++-.||+-.+.
T Consensus 11 i~~fI~~lk~r~v~-gS~aiA~eTl~llr~iIs~~rw~~~n~Li~~vr~~g~~L------~~A~psE~~~gNiirrIlkl 83 (353)
T KOG1465|consen 11 ISEFIAALKKRLVR-GSYAIAIETLNLLRQIISRERWSTANDLIESVRDVGKKL------HAAQPSELSCGNIIRRILKL 83 (353)
T ss_pred HHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHh------hhcCCchhhhhHHHHHHHHH
Confidence 56788999999854 577 99999999999998888777778877766444333 22334445677889988888
Q ss_pred HHHHH
Q 009124 150 LEERL 154 (543)
Q Consensus 150 LdeRL 154 (543)
+.|-.
T Consensus 84 iReE~ 88 (353)
T KOG1465|consen 84 IREEV 88 (353)
T ss_pred HHHHH
Confidence 75543
No 30
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=21.91 E-value=2.4e+02 Score=32.61 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCC
Q 009124 511 QTANPFANPYAA 522 (543)
Q Consensus 511 ~~~~~~~~~~~~ 522 (543)
++.|||+.+|.-
T Consensus 306 ~~~~p~dq~hpq 317 (757)
T KOG4368|consen 306 PPNKPFDQPHPV 317 (757)
T ss_pred CCCCCCCCCCCC
Confidence 455677776643
No 31
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=20.99 E-value=7e+02 Score=28.71 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCcccHHHHHHhhh
Q 009124 93 TLIVIHRALREVDPTFHEEVINYGR 117 (543)
Q Consensus 93 tLIllHrLLreG~p~f~eell~y~~ 117 (543)
.|+++.++|.+.....++.++..+.
T Consensus 376 GCcvLq~cl~~~~~~~rd~Lv~~i~ 400 (536)
T KOG2049|consen 376 GCCVLQKCLDYSRGEQRDRLVEEIS 400 (536)
T ss_pred ccchhHHHhcchhHHHHHHHHHHHH
Confidence 4678888999988888888877666
No 32
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=20.85 E-value=2.2e+02 Score=27.80 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=64.7
Q ss_pred ccch--hhcccC-CChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCchHHHHHHHHH
Q 009124 21 TTVS--LAKVNS-DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVI 97 (543)
Q Consensus 21 tsig--lAkv~~-~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nWValKtLIll 97 (543)
+||| |||.-+ .|-|.|..|.+.|. +-|.+|+..-. ..-|+.+-.+ ++|.|...
T Consensus 16 STIGr~LAk~L~~~F~D~D~~Ie~~~g--------~sI~eIF~~~G--------E~~FR~~E~~--------vl~~l~~~ 71 (172)
T COG0703 16 STIGRALAKALNLPFIDTDQEIEKRTG--------MSIAEIFEEEG--------EEGFRRLETE--------VLKELLEE 71 (172)
T ss_pred hHHHHHHHHHcCCCcccchHHHHHHHC--------cCHHHHHHHHh--------HHHHHHHHHH--------HHHHHhhc
Confidence 4555 566544 58999999999877 34555555321 1123333333 56777666
Q ss_pred H-HHHhhCCcccH-HHHHHhhhcCCC--ccccc------ccC-CCCCCCCCchhHHHHHHHHHHHHHHHHhhhc
Q 009124 98 H-RALREVDPTFH-EEVINYGRSRSH--MLNMA------HFK-DDSSPNAWDYSAWVRSYALFLEERLECFRVL 160 (543)
Q Consensus 98 H-rLLreG~p~f~-eell~y~~sr~~--iL~Ls------~F~-D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~ 160 (543)
| .++.-|...+. +|..++++.++. .|+.+ +.. |.+.|.--+... ...+-..+++|.-+|+..
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~-~~~l~~L~~~R~~~Y~e~ 144 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDP-REELEELLEERQPLYREV 144 (172)
T ss_pred CCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCCh-HHHHHHHHHHHHHHHHHh
Confidence 5 67776776655 666777776654 23221 222 333343333333 344666677777777654
Done!