Query 009124
Match_columns 543
No_of_seqs 211 out of 509
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 4.7E-73 1.6E-77 580.4 29.7 275 8-300 6-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 4.3E-68 1.5E-72 546.2 25.2 276 8-300 11-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 9.3E-66 3.2E-70 519.9 24.3 254 8-277 11-269 (271)
4 1eyh_A Epsin; superhelix of he 99.4 8.6E-13 2.9E-17 121.6 10.8 117 31-154 2-120 (144)
5 1inz_A EPS15-interacting porte 99.4 1.2E-12 4.1E-17 121.2 10.4 118 31-155 20-139 (148)
6 1xgw_A Epsin 4; ENTH, enthopro 99.1 9.4E-10 3.2E-14 104.4 12.5 116 31-153 31-149 (176)
7 3onk_A Epsin-3, ENT3; helix, p 99.0 6.4E-10 2.2E-14 103.1 10.4 115 31-152 8-125 (150)
8 1vdy_A Hypothetical protein (R 98.2 1E-05 3.5E-10 74.1 11.0 114 34-153 11-127 (140)
9 1elk_A Target of MYB1; superhe 95.0 0.075 2.5E-06 49.0 8.6 77 34-112 16-93 (157)
10 3ldz_A STAM-1, signal transduc 94.5 0.12 4E-06 46.8 8.3 77 33-112 4-81 (140)
11 3rru_A TOM1L1 protein; structu 94.4 0.13 4.6E-06 47.3 8.7 78 33-112 15-93 (152)
12 1x5b_A Signal transducing adap 94.4 0.11 3.7E-06 48.3 7.9 77 33-112 14-91 (163)
13 3g2s_A C-terminal fragment of 94.3 0.18 6.2E-06 46.2 9.1 78 32-112 9-87 (149)
14 1mhq_A ADP-ribosylation factor 94.1 0.13 4.3E-06 47.1 7.7 75 35-112 2-77 (148)
15 1juq_A ADP-ribosylation factor 94.1 0.12 4.3E-06 48.3 7.8 78 32-112 11-89 (171)
16 3zyq_A Hepatocyte growth facto 93.8 0.19 6.5E-06 48.9 8.8 78 32-112 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 93.1 0.25 8.5E-06 47.6 8.3 75 35-112 6-81 (220)
18 3iot_A Maltose-binding protein 67.6 1 3.5E-05 46.8 -0.3 14 242-255 185-198 (449)
19 3bej_E Nuclear receptor coacti 52.8 6 0.00021 25.6 1.5 12 96-107 14-25 (26)
20 3iot_A Maltose-binding protein 48.2 4.8 0.00016 41.7 0.8 10 177-186 130-139 (449)
21 2prg_C Nuclear receptor coacti 26.9 25 0.00084 29.3 1.6 12 96-107 67-78 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=4.7e-73 Score=580.44 Aligned_cols=275 Identities=25% Similarity=0.440 Sum_probs=242.7
Q ss_pred hHHHHHHhhhc-ccccchhhcccCCChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCC
Q 009124 8 KSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTH 86 (543)
Q Consensus 8 ~~lrka~GalK-D~tsiglAkv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~ 86 (543)
++||+++|++| |+|+. ++++||+|||+|+++|||+||||+||.+|+.++ +++++|+|+|.+| .+++
T Consensus 6 ~~~~~~~~a~k~~~~~~----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R-~~~~ 72 (299)
T 1hx8_A 6 QTINDRLLAARHSLAGQ----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER-SQNA 72 (299)
T ss_dssp ----------------C----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-HTCS
T ss_pred HHHHHHHHHHhhccchh----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-ccCC
Confidence 59999999999 88885 466799999999999999999999999999875 7899999999999 5899
Q ss_pred ch-HHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCcccccccCCCCC-----------CCCCchhHHHHHHHHHHHHHH
Q 009124 87 NW-VALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEERL 154 (543)
Q Consensus 87 nW-ValKtLIllHrLLreG~p~f~eell~y~~sr~~iL~Ls~F~D~ss-----------~~s~d~safVR~Ya~YLdeRL 154 (543)
|| ||||+|||||||||||||.|.+++ ++++++|+|++|+|+++ +.+||||.|||+|++||++|+
T Consensus 73 ~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~ 148 (299)
T 1hx8_A 73 NWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKS 148 (299)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99 999999999999999999987766 33567999999999865 357899999999999999999
Q ss_pred HHhhhcccccccC-----CCCCCCCChHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009124 155 ECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDG 229 (543)
Q Consensus 155 ~~~r~~~~d~~~e-----~~~~~~l~~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dg 229 (543)
.+|+..++|++.. ..++++|++++||++++.||+|||++++|++.+.+.+|+|+++||++||+||++||+++|+|
T Consensus 149 ~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~g 228 (299)
T 1hx8_A 149 LSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDG 228 (299)
T ss_dssp HHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998642 23789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009124 230 TVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 300 (543)
Q Consensus 230 iinLLe~fFeM~~~Da~kal~IYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd 300 (543)
|+||||+||+|++.||++||+||+||.+|+++|++||++||++++++ ++||+|+++|++|+++|||||++
T Consensus 229 i~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~ 298 (299)
T 1hx8_A 229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT 298 (299)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999977 89999999999999999999986
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=4.3e-68 Score=546.16 Aligned_cols=276 Identities=24% Similarity=0.443 Sum_probs=236.8
Q ss_pred hHHHHHHhhhcccccchhhcccCCChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCc
Q 009124 8 KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHN 87 (543)
Q Consensus 8 ~~lrka~GalKD~tsiglAkv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~n 87 (543)
++++.-+.|.|. .|.+ +++++||+|||+|+++|||+||||+||.+|+.++ +++.+|+++|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~-------~~~~--s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~~ 78 (310)
T 3zym_A 11 QSLTDRITAAQH-------SVTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (310)
T ss_dssp -CHHHHHHHHHH-------CCHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHh-------cccc--cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CCc
Confidence 477777777765 2333 8999999999999999999999999999999875 678999999999998 899
Q ss_pred h-HHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhccccccc
Q 009124 88 W-VALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIET 166 (543)
Q Consensus 88 W-ValKtLIllHrLLreG~p~f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~ 166 (543)
| ||||+|||||||||+|||.|.+ |+++++++|+|++|+|++++.+|||+.|||+|++||++|+.+|+.++.|++.
T Consensus 79 w~vv~KaLivlH~llreG~~~~l~----~~~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~ 154 (310)
T 3zym_A 79 WVVVFKSLITTHHLMVYGNERFIQ----YLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 154 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHH----HHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHH----HHHhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9 9999999999999999998755 4454667999999999987778999999999999999999999999999875
Q ss_pred CC----CCCCCCChHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 009124 167 DR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQR 242 (543)
Q Consensus 167 e~----~~~~~l~~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~ 242 (543)
.+ .++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+++|+||+||||+||||++
T Consensus 155 ~~~~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~ 234 (310)
T 3zym_A 155 VKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234 (310)
T ss_dssp SCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 32 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009124 243 HDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 300 (543)
Q Consensus 243 ~Da~kal~IYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd 300 (543)
.||++||+||+||.+|+++|++||++||++|+.+. +||+|+++|++++..+|.-|.|
T Consensus 235 ~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEG 291 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999997665 9999999999999999988876
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=9.3e-66 Score=519.86 Aligned_cols=254 Identities=25% Similarity=0.470 Sum_probs=233.8
Q ss_pred hHHHHHHhhhcccccchhhcccCCChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCc
Q 009124 8 KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHN 87 (543)
Q Consensus 8 ~~lrka~GalKD~tsiglAkv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~n 87 (543)
++++.-+.+.|. .|.+ +++++||+|||+|+++|||+||||+||.+|+.++ .++.+|+++|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~-------~~~~--s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~~~ 78 (271)
T 3zyl_A 11 QSLTDRITAAQH-------SVTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (271)
T ss_dssp -CHHHHHHHHHH-------HHHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHh-------cccc--hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-CCc
Confidence 577777777765 2233 8999999999999999999999999999999875 678999999999998 899
Q ss_pred h-HHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhccccccc
Q 009124 88 W-VALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIET 166 (543)
Q Consensus 88 W-ValKtLIllHrLLreG~p~f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~ 166 (543)
| ||||+|||||||||+|||.|.++ +++++++|+|++|+|++++.+|||++|||+|++||++|+.+|+..+.|++.
T Consensus 79 w~v~~KaLivlH~llreG~~~~l~~----~~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~ 154 (271)
T 3zyl_A 79 WVVVFKSLITTHHLMVYGNERFIQY----LASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 154 (271)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHH----HHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHH----HHhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9 99999999999999999987654 454668999999999987788999999999999999999999999999875
Q ss_pred CC----CCCCCCChHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 009124 167 DR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQR 242 (543)
Q Consensus 167 e~----~~~~~l~~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~ 242 (543)
.+ .++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+++|+|||||||+||||++
T Consensus 155 ~k~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~ 234 (271)
T 3zyl_A 155 VKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234 (271)
T ss_dssp SCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred cCCCCCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 32 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009124 243 HDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRG 277 (543)
Q Consensus 243 ~Da~kal~IYkRf~kQ~e~L~~Fy~~ck~l~~~r~ 277 (543)
.||++||+||+||.+|+++|++||++||++|++|+
T Consensus 235 ~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 99999999999999999999999999999999886
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.40 E-value=8.6e-13 Score=121.64 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=96.4
Q ss_pred CChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccC-Cch-HHHHHHHHHHHHHhhCCccc
Q 009124 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT-HNW-VALKTLIVIHRALREVDPTF 108 (543)
Q Consensus 31 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT-~nW-ValKtLIllHrLLreG~p~f 108 (543)
++++.++.|..|||++..+|+.+++.+|..+|+.. .++..++..|.+||... ++| +++|+|+|||.||+.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 47899999999999999999999999999999974 56788999999999753 699 99999999999999999988
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHH
Q 009124 109 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 154 (543)
Q Consensus 109 ~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 154 (543)
..++...+. .+..|.+|.-- ...+.|.+..||.+|++|.+-|
T Consensus 79 v~~~~~~~~---~i~~L~~F~y~-d~~g~D~G~~VR~kak~l~~Ll 120 (144)
T 1eyh_A 79 SQQCKENMY---AVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALL 120 (144)
T ss_dssp HHHHHHTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhH---HHhhhccceee-CCCccchHHHHHHHHHHHHHHH
Confidence 776643322 36778887421 1245789999999999995443
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.38 E-value=1.2e-12 Score=121.20 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=97.3
Q ss_pred CChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccC-Cch-HHHHHHHHHHHHHhhCCccc
Q 009124 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT-HNW-VALKTLIVIHRALREVDPTF 108 (543)
Q Consensus 31 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT-~nW-ValKtLIllHrLLreG~p~f 108 (543)
.+++.++.|..|||++..+|+.|++.+|..+|+.. .++..++..|.+||... ++| +++|+|+|+|.||+.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 47899999999999999999999999999999985 56788999999999753 799 99999999999999999888
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 009124 109 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 155 (543)
Q Consensus 109 ~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~ 155 (543)
..++...+. .+..|.+|.-- ...+.|.+..||.+|++|.+-|.
T Consensus 97 v~~~r~~~~---~I~~L~~F~y~-d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKENMY---AVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHTHH---HHHHHHHCCCC-CSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHH---HHHhhcceeee-CCCCcCchHHHHHHHHHHHHHhC
Confidence 766643322 36677775321 12457889999999999977554
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.06 E-value=9.4e-10 Score=104.42 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=93.4
Q ss_pred CChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhh-cc-CCch-HHHHHHHHHHHHHhhCCcc
Q 009124 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL-SK-THNW-VALKTLIVIHRALREVDPT 107 (543)
Q Consensus 31 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL-~k-T~nW-ValKtLIllHrLLreG~p~ 107 (543)
.+++.++.|..|||.+..+|..+++.+|..+|+.. .++..++..|.+|| .. .++| +++|+|+|++.||+.|+..
T Consensus 31 ~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~ 107 (176)
T 1xgw_A 31 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSER 107 (176)
T ss_dssp CCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHH
Confidence 47999999999999999999999999999999986 46789999999996 43 4899 9999999999999999987
Q ss_pred cHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHH
Q 009124 108 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEER 153 (543)
Q Consensus 108 f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeR 153 (543)
|.+++..++. .+-.|.+|.-- ...+.|.+..||..|+.|.+-
T Consensus 108 vv~~~r~~i~---~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~L 149 (176)
T 1xgw_A 108 VVTSAREHIY---DLRSLENYHFV-DEHGKDQGINIRQKVKELVEF 149 (176)
T ss_dssp HHHHHHHTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH---HHHhhccCeeE-CCCCCChHHHHHHHHHHHHHH
Confidence 7766533221 13346666421 124578999999999999543
No 7
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.05 E-value=6.4e-10 Score=103.08 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=92.4
Q ss_pred CChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccC--Cch-HHHHHHHHHHHHHhhCCcc
Q 009124 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT--HNW-VALKTLIVIHRALREVDPT 107 (543)
Q Consensus 31 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT--~nW-ValKtLIllHrLLreG~p~ 107 (543)
++++.++-|..|||.+..+|..+++.+|..+|+.. .++..++..|.+||... ++| +++|+|+|++.||+.|++.
T Consensus 8 ~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~ 84 (150)
T 3onk_A 8 NYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSER 84 (150)
T ss_dssp CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999975 46778899999999753 589 9999999999999999988
Q ss_pred cHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHH
Q 009124 108 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEE 152 (543)
Q Consensus 108 f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLde 152 (543)
|..++..++. .+-.|.+|.--. ..+.|.+.-||..|+.|.+
T Consensus 85 vv~~~r~~~~---~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~ 125 (150)
T 3onk_A 85 FIDDTRNSIN---LIRILETFHYID-SQGRDQGINVRTRVKALIE 125 (150)
T ss_dssp HHHHHHTTHH---HHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHhhhcccccC-CCCCchHHHHHHHHHHHHH
Confidence 7766532221 133366664211 2356889999999999854
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.17 E-value=1e-05 Score=74.10 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=89.9
Q ss_pred hHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCc-HHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHH
Q 009124 34 ELDIAIVKATNHVERPAKEKHIRAVFASISATRPRAD-VAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 34 dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~-v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~ee 111 (543)
.-.+-|.+||+.++.||--==+.+|-..|+.+. .+ +..++..|.+||.+ ++| |.+|+|-+|-.|++.|++.|+.+
T Consensus 11 ~~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~--~~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~ 87 (140)
T 1vdy_A 11 WRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSH--VSIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRRE 87 (140)
T ss_dssp HHHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHH
Confidence 345678999999998888878889999998863 23 36788899999965 789 99999999999999999998877
Q ss_pred HHHhhhcCCCcccccccCCCCCC-CCCchhHHHHHHHHHHHHH
Q 009124 112 VINYGRSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEER 153 (543)
Q Consensus 112 ll~y~~sr~~iL~Ls~F~D~ss~-~s~d~safVR~Ya~YLdeR 153 (543)
+.+++. .+-.+.+|+....+ .+.+.+..||.-|+=|-+-
T Consensus 88 ~r~~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 88 MQRNSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHTTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHhHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 654432 26667788755433 4688999999988877553
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.02 E-value=0.075 Score=49.02 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=65.2
Q ss_pred hHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 34 ELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 34 dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
.++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||...+|. |++-+|.|+.-|+..+.+.|..|+
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 789999999999988888888888777776543 45688999999999655788 999999999999999988887665
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.47 E-value=0.12 Score=46.79 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=64.7
Q ss_pred hhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHH
Q 009124 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 33 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~ee 111 (543)
..++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||. .+|. |++-+|.++.-|+..+.+.|..|
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~--~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSR--TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3568899999999988899888888888777653 456789999999996 4677 99999999999999998888755
Q ss_pred H
Q 009124 112 V 112 (543)
Q Consensus 112 l 112 (543)
+
T Consensus 81 v 81 (140)
T 3ldz_A 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=94.43 E-value=0.13 Score=47.27 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=66.3
Q ss_pred hhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHH
Q 009124 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 33 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~ee 111 (543)
..++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||...+|. |++-+|.|+--|+..+...|..|
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5799999999999988888888888777766543 45688999999999755688 99999999999999999988877
Q ss_pred H
Q 009124 112 V 112 (543)
Q Consensus 112 l 112 (543)
+
T Consensus 93 i 93 (152)
T 3rru_A 93 I 93 (152)
T ss_dssp H
T ss_pred H
Confidence 6
No 12
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.35 E-value=0.11 Score=48.31 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=64.1
Q ss_pred hhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHH
Q 009124 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEE 111 (543)
Q Consensus 33 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~ee 111 (543)
..++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||. .+|. |++-+|.|+.-|+..+...|..|
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4578999999999988888888888887776643 456789999999996 4677 99999999999999988878755
Q ss_pred H
Q 009124 112 V 112 (543)
Q Consensus 112 l 112 (543)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=94.25 E-value=0.18 Score=46.21 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=66.8
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHH
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHE 110 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~e 110 (543)
...++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||. .+|. |++-+|.|+.-|+..+.+.|..
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~--~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDF--EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 46799999999999998888888888887777653 456788999999996 5788 9999999999999999988876
Q ss_pred HH
Q 009124 111 EV 112 (543)
Q Consensus 111 el 112 (543)
|+
T Consensus 86 ei 87 (149)
T 3g2s_A 86 EV 87 (149)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 14
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=94.10 E-value=0.13 Score=47.13 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||. .+|. |++-+|.|+.-|+..+.+.|..|+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 67889999999888888888888877776542 345788999999995 5788 999999999999999888887665
No 15
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=94.06 E-value=0.12 Score=48.28 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=65.1
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHH
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHE 110 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~e 110 (543)
...++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||. .+|- |++-+|.|+.-|+..+...|..
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 35699999999999988899888888887776653 456788999999996 5677 9999999999999998777765
Q ss_pred HH
Q 009124 111 EV 112 (543)
Q Consensus 111 el 112 (543)
|+
T Consensus 88 ev 89 (171)
T 1juq_A 88 EV 89 (171)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=93.76 E-value=0.19 Score=48.89 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=65.4
Q ss_pred ChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHH
Q 009124 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHE 110 (543)
Q Consensus 32 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~e 110 (543)
.+.++..|.|||+....-|+--.+-+|.-...... .....++.+|.+||. .+|. |++-+|.|+.-++..+...|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~--~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD--TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 46899999999999988899888888877776542 445788999999996 5788 9999999999999999888866
Q ss_pred HH
Q 009124 111 EV 112 (543)
Q Consensus 111 el 112 (543)
|+
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 55
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=93.08 E-value=0.25 Score=47.64 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHhhCCcccHHHH
Q 009124 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEV 112 (543)
Q Consensus 35 L~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-ValKtLIllHrLLreG~p~f~eel 112 (543)
++..|.|||+....-|+-..+-+|.-...... .....++.+|.+||. .+|. |++-+|.|+.-++..+.+.|..|+
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 88999999999988888888888887776543 456788999999996 4788 999999999999999877776554
No 18
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=67.57 E-value=1 Score=46.79 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 009124 242 RHDALKALDIYRRA 255 (543)
Q Consensus 242 ~~Da~kal~IYkRf 255 (543)
..+.+++++.|++.
T Consensus 185 ~~~~~~al~~~~~l 198 (449)
T 3iot_A 185 NAGAKAGLTFLVDL 198 (449)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 35556666554443
No 19
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=52.83 E-value=6 Score=25.57 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.1
Q ss_pred HHHHHHhhCCcc
Q 009124 96 VIHRALREVDPT 107 (543)
Q Consensus 96 llHrLLreG~p~ 107 (543)
++||||++|.|.
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 589999999873
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=48.24 E-value=4.8 Score=41.67 Aligned_cols=10 Identities=20% Similarity=0.056 Sum_probs=4.6
Q ss_pred HHHHhhHHHH
Q 009124 177 AELLEHLPAL 186 (543)
Q Consensus 177 ~~LL~~L~~L 186 (543)
++|++....|
T Consensus 130 del~~~a~~l 139 (449)
T 3iot_A 130 EEIPALDKEL 139 (449)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 21
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=26.94 E-value=25 Score=29.29 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.4
Q ss_pred HHHHHHhhCCcc
Q 009124 96 VIHRALREVDPT 107 (543)
Q Consensus 96 llHrLLreG~p~ 107 (543)
++||||++|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999874
Done!