BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009126
(543 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis
thaliana GN=At2g05160 PE=2 SV=1
Length = 536
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/519 (55%), Positives = 354/519 (68%), Gaps = 54/519 (10%)
Query: 1 MDFTESTKAVYNRIQKLEPENVSKIIGYLLL-QDHGERDMIRLAFSPDHLIYSLINEAKM 59
M+FTES V+ RIQ+LEPEN +KI GYLLL Q++G RDMIRLAF PD ++ S+IN K
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 60 KLGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQ 119
+L P P+ P +F F+ +S VS M+ FW+
Sbjct: 61 ELARNSHHYHSP--PSDHIPTP-KFGSFTGSSPLSVSVSPPMKTG---FWE--------- 105
Query: 120 QVNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVR 179
NS E DT LQN +QFL ED S +FS+ +F E +R
Sbjct: 106 --NSTEM------DT------LQNNLQFLNFEDPLTS-----PEFSNGFFSQERQCLPLR 146
Query: 180 TSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPE--SFSQIFSPNANDIRNEDH 237
TSRRSPSLPEFPVK+CHYFNKGFCKHGNNCRYFHG +PE SF+Q+F+PN N++ +E+H
Sbjct: 147 TSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPN-NNLSDEEH 205
Query: 238 VFSPGSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY 297
V SP SLE+LE EI ELLK RRG PISIASLPMMYYEKYG+TLQAEGYLTESQRHGKAGY
Sbjct: 206 VVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGY 265
Query: 298 SLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPA 357
SLTKLLARLKN+IRL+DRPHGQHSVILAED K++EY+GE+++ G I+AGSRQIYLTFPA
Sbjct: 266 SLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPA 325
Query: 358 ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
ES+FTE DVS YF+ +G V+DVRIPCQQKRM+GFVTF +ETVK ILAKGNPHF+C ARV
Sbjct: 326 ESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARV 385
Query: 418 LVKPYREKSRLVDRKYVEKMQ--HPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEH 475
LVKPYREKSR +Y++ + H M F + D E++T+P + S +RK + E
Sbjct: 386 LVKPYREKSR--SSRYLDNYKPLHGMRYGSKFIERDIEMNTLPPRVSESSRMRKPFLSEP 443
Query: 476 EQAIELERRRLSEMQLACKPMNHHSYFGYSMDELQPLQN 514
EQ++ P N +SY G+S D+ + N
Sbjct: 444 EQSVS-----------KSLPTN-YSYLGFSSDDFKLTSN 470
>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa
subsp. japonica GN=Os08g0126700 PE=2 SV=2
Length = 653
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 317/560 (56%), Gaps = 70/560 (12%)
Query: 1 MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60
M+ E K + R+Q++EPE+V KI G +LL++ E ++++LA+ P+ + + I + K
Sbjct: 50 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109
Query: 61 LGLGKPTVSPPISPASVADLPLQFA--------PFSPASTRPVSSPASMRAAASP----- 107
L + S + + P S PV + +R SP
Sbjct: 110 LTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAA 169
Query: 108 -----------FW-----DPQMAADQQQQVNSIEFVQPGYS-DTAAED-FCLQNQMQFLT 149
+W P A QQ EF PG D +AE + L+ L
Sbjct: 170 AAFGYQVQSPQYWPDSPPAPPTKAAQQ------EFAPPGLVVDASAEGPYPLRGGQHVLD 223
Query: 150 LEDQFDSVNSVNSDFSSSYFYP--EPALGHVRT--------SRRSPSLPEFPVKVCHYFN 199
+++F Y+YP E A + +RRS L + CHYF+
Sbjct: 224 -----------DNNFGGGYYYPAGEDAFPNGGGGGGGSPARARRSNGLST--RRPCHYFS 270
Query: 200 KGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFSPGSLERLEAEITELLKQRR 259
KG CK+G NC Y H ++ + + N + ++ +PGSLE LE EITELL RR
Sbjct: 271 KGICKNGQNCHYSHHQVYQDALAGA-AINGDVYNHQPGGVTPGSLETLEMEITELLNSRR 329
Query: 260 GFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQ 319
G P+SIASLP +Y EKYGK LQA+GYLTESQRHGKAGYSLT+LL+RL N IR+I+RPHGQ
Sbjct: 330 GQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQ 388
Query: 320 HSVILAEDVPKYLEY----SGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGP 375
HSV+LAED KY+++ G D G + A S QIYLTFPAESTF E DV+NYF ++GP
Sbjct: 389 HSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGP 448
Query: 376 VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRLVDRKYVE 435
V+DVRIPCQ++RMFGFV+F ETV IL + NPHF+CG+RVLVKPYREKS+ VDR V+
Sbjct: 449 VRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVD 508
Query: 436 KMQHPM-FCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQLACK 494
++ + +C F + D EL+T + SRL+RKQL E+ E +E+ERRR + +L
Sbjct: 509 NIKSMVPYCPPRFFEFDQELYTA--EYDASRLMRKQLAEKREMLLEMERRRATVRRLESM 566
Query: 495 PMNHHSYFGYSMDELQPLQN 514
P +YF S+++ PL +
Sbjct: 567 P-PQFAYFDCSIEDASPLHS 585
>sp|Q9SV09|C3H46_ARATH Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis
thaliana GN=At3g51950 PE=1 SV=1
Length = 540
Score = 226 bits (575), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 183/538 (34%), Positives = 248/538 (46%), Gaps = 122/538 (22%)
Query: 1 MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60
MD E+T+ V +RIQ L+PEN SKI+G LLLQDHGE++MIRLAF P+ L++S+I +AK +
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120
LGL + SP Q SP + R +S+ A+ PF
Sbjct: 61 LGLMNCSRSP---------WSHQDELISPKNNRG----SSLNPASLPF------------ 95
Query: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180
Y++ L N + + D +NS ++DF S +
Sbjct: 96 ----------YANGGRSSRDLTNDFELM------DDMNSRSTDFLGSVHARSGSCVLDGL 139
Query: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240
S F C YF +GFCK+G +CR+ H D V S
Sbjct: 140 GYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHSD-----------------GGADLVGS 182
Query: 241 PGSLERLEAE-ITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 299
P +E L + + L ++ +SLP + G LQ + QR A
Sbjct: 183 PSRIELLRSNSVPPRLAHHF---MTRSSLP--SFSTKGVNLQQ----NDVQRAAAA---- 229
Query: 300 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVA-GSRQIYLTFPAE 358
+++ +++ K + E+ D + SRQIYLTFPA+
Sbjct: 230 ----------------------LMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPAD 267
Query: 359 STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418
S F E+DVSNYFS FGPVQDVRIP QQKRMFGFVTFV+ ETVK ILAKGNPHFVC +RVL
Sbjct: 268 SRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 419 VKPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRAC-------NNSR--LLRK 469
VKPY+EK ++ D+ + T L + PR NN++ L R
Sbjct: 328 VKPYKEKGKVPDKYRTNQTTERELSP-------TGLDSSPRDVLGGRGFYNNTQDVLWRS 380
Query: 470 QLMEEHEQAIELERRRLSEMQL--------ACKPMNHHSYFGYSMDELQPLQNKVISR 519
+ EE +EL+ RRL +QL P N HS +S + P VI R
Sbjct: 381 KFEEE---ILELQSRRLMNLQLLDVKKHFQLNSPTNIHSPNPFSQSLISPRPLSVIKR 435
>sp|Q84ZT0|C3H51_ORYSJ Putative zinc finger CCCH domain-containing protein 51 OS=Oryza
sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1
Length = 513
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 156/243 (64%), Gaps = 29/243 (11%)
Query: 195 CHY-FNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFSPGSLERLEAEITE 253
CH+ F +G+CK G NC++FHG +PE + N V SL +L+ EI E
Sbjct: 182 CHFHFFRGYCKKGVNCQFFHG-SVPE------------LHNPRQVHPFASLSKLDMEIRE 228
Query: 254 LLKQRRGFP--ISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIR 311
LL G P +++ LP MY+EKYGK L+ +G+LTESQ+HG+ G SLT LL L N+IR
Sbjct: 229 LLI---GIPPPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGL-NTIR 284
Query: 312 LIDRPHGQHSVILAEDVPKY------LEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQD 365
+++R HGQ+ V+L ED K L +S D G GS QIY+TFP S FT+ D
Sbjct: 285 VVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDD 341
Query: 366 VSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425
V NYF +FGPV VRIP Q+KRMFGFV+F++ ETV+ IL+KG HF+CG RVLVK Y EK
Sbjct: 342 VENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEK 401
Query: 426 SRL 428
S L
Sbjct: 402 SEL 404
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa
subsp. japonica GN=Os07g0682400 PE=2 SV=1
Length = 682
Score = 215 bits (548), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 175/535 (32%), Positives = 257/535 (48%), Gaps = 91/535 (17%)
Query: 1 MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60
MD E+TK V++RIQ L+P++ +KI+G+LL+QDHGE++MIRLAF P+ L+++++ +A+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 61 LGLGKPTVSPPISPASV-ADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQ 119
LGL S P +P SV A +PF + + +
Sbjct: 61 LGL--LPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFS 118
Query: 120 QVNSI-------------EFVQPGY----------SDTAAEDFCLQNQMQFLT------- 149
+ NSI E + P D ++ LQ+Q+ FL
Sbjct: 119 RNNSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAG 178
Query: 150 ----LEDQFDSVNSVNSD---FSSSYFYPEPALGHVRTSRRSPSLPEFPV--------KV 194
+ D + + D FS + + GH RRS S+ E + K
Sbjct: 179 HQMPMFDGGECRSPGGGDGGLFSYNLGWANGGPGH----RRSASVSELCLGGADGLGWKP 234
Query: 195 CHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFSPGSLERLEAEITEL 254
C Y+ +G+CK+G+ CR+ HG +P+ + P+A + + +D + S +RL A
Sbjct: 235 CLYYARGYCKNGSACRFVHGG-LPDDAAGKMDPSAVEQQCQDFLIRSKS-QRLAAAA--- 289
Query: 255 LKQRRGFPI----SIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSI 310
FP S+ P + LQ + ESQR + L+ +
Sbjct: 290 ------FPYSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRA----AAAAALMLGGDEAH 339
Query: 311 RLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYF 370
+ + RP + + + P GSRQIYLTFPA+STF E+DVSNYF
Sbjct: 340 KFMGRPRLERADFASMMNP-----------------GSRQIYLTFPADSTFREEDVSNYF 382
Query: 371 SKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRLVD 430
S +GPV DVRIP QQKRMFGFVTFV+ ETVK ILAKGNPHF+C ARVLVKPY+EK ++ D
Sbjct: 383 SIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD 442
Query: 431 RKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRR 485
KY + QH + F+ T R + L ++++ A E+ RR
Sbjct: 443 -KY--RKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRR 494
>sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis
thaliana GN=At5g12440 PE=2 SV=3
Length = 650
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 165/567 (29%), Positives = 254/567 (44%), Gaps = 107/567 (18%)
Query: 1 MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60
MD ++T + +I+ LEP+ KIIGYLLL D G+RD++ LA P+ ++ S I +K+K
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTI--SKVK 58
Query: 61 LGLG-----------------KPTVSPPISP--ASVADLPLQF-------------APFS 88
LG P PP++ +S ++ + F F+
Sbjct: 59 SLLGIFSNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPSSPSSTSPWSFN 118
Query: 89 PASTRPVSSPASMRAAASPFWDPQMAADQQQQVNSIEFVQPGYSDTAAEDFCLQNQMQFL 148
+ + +P P + Q N + G +D A L +Q
Sbjct: 119 NCINGNNGNNPHISPKHTPISKPFSS----HQSNGLSATHSGSADAAGGADLLDDQQLND 174
Query: 149 TLEDQFDSVNSVNS--DFSSSYFYPEPALGHVRTSRRSPSLPEFPV----------KVCH 196
L DS + D S Y G RRS S V K C
Sbjct: 175 CLSFLDDSCSKTEDLVDPSIPLDYSVDGDGETHLHRRSFSCDASFVSGDDGFGGGCKPCV 234
Query: 197 YFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFSPGSLERLEAEITELLK 256
YF++G CK+G +C++ HG P++ + N I + SP +E + E+++
Sbjct: 235 YFSRGLCKNGESCKFIHGG-YPDNM------DGNGIVAD----SPRKMENFVRQHEEMMR 283
Query: 257 ------QRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSI 310
Q+R + P + YEK L + +QR G + + + +
Sbjct: 284 LKLAYQQQRLASQILGRAPQLPYEKRMDFLLQQ----HAQRDGGLPFGDERFWSSSPGRL 339
Query: 311 RLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYF 370
++ + G++S+ + SRQIYLTFPA+STF ++DV+ YF
Sbjct: 340 ERME----------------LAMHLGDQSN-----SASRQIYLTFPADSTFKDEDVATYF 378
Query: 371 SKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRLVD 430
S FG VQDVRIP QQKRMFGFV+F ETVK +LA+GNPHF+C +RVLVKPY+EK +++D
Sbjct: 379 SLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLD 438
Query: 431 RK-------YVEKMQHPMFCSLHFTD--GDTELHTMPRACNNSRLLRKQLMEEHE--QAI 479
+K +E+ + S D ++ H + R + ++ +E+ + +AI
Sbjct: 439 KKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHLGSKMLYERREMMRRKIEQADLLRAI 498
Query: 480 ELERRRLSEMQL----ACKPMNHHSYF 502
ELERRR +QL +NHH F
Sbjct: 499 ELERRRFINLQLPEFKNSVTLNHHRSF 525
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa
subsp. japonica GN=Os03g0329200 PE=2 SV=1
Length = 677
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 105/160 (65%), Gaps = 17/160 (10%)
Query: 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK 406
GSRQIYLTFPA+STF E+DVSNYFS +GPV DVRIP QQKRMFGFVTFV+ ETVK ILAK
Sbjct: 357 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 416
Query: 407 GNPHFVCGARVLVKPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDT----ELHTM----- 457
GNPHF+C ARVLVKPY+EK ++ D+ K Q FC + T D + H +
Sbjct: 417 GNPHFICDARVLVKPYKEKGKVPDK--YRKQQQGDFCCMSPTGLDARDPFDFHQLGARML 474
Query: 458 --PRACNNSRLLRK----QLMEEHEQAIELERRRLSEMQL 491
+ N L RK Q E +QAI+L RRL +QL
Sbjct: 475 QHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQL 514
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 124/269 (46%), Gaps = 71/269 (26%)
Query: 1 MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60
MD E+TK V++RIQ L+P++ +KI+G LL+QDHG+++MIRLAF P+ L++S++ +A+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LGLGKPTVSPPISPASVADLPLQFAPF----SPASTRPVSSPASMRAAASPF-----WDP 111
L L + PP + +S +P +PF + P SP+S A A PF
Sbjct: 61 LAL----LPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSW-AQAQPFSRSNSMGN 115
Query: 112 QMAADQQQQVNSIEFVQ-----------------PGYSDTAAEDFCLQNQMQFLTLEDQF 154
AAD + V + E + P D +DF LQ Q+ FL
Sbjct: 116 GGAAD--EMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFL-----H 168
Query: 155 DSVNSVNSDFSSSYF----------------------YPEPALGHVRTSRRSPSLPE--- 189
D VN + F + GH RRS S+ E
Sbjct: 169 DGAGGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGH----RRSASVNELCL 224
Query: 190 ----FPVKVCHYFNKGFCKHGNNCRYFHG 214
F K C Y+ +GFCK+G+ CR+ HG
Sbjct: 225 GGDGFGWKPCLYYARGFCKNGSTCRFVHG 253
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa
subsp. japonica GN=Os03g0328900 PE=2 SV=2
Length = 688
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 104/158 (65%), Gaps = 13/158 (8%)
Query: 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK 406
GSRQIYLTFPA+STF E+DVSNYFS +GPV DVRIP QQKRMFGFVTFV+ ETVK ILAK
Sbjct: 364 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 423
Query: 407 GNPHFVCGARVLVKPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDT--ELHTMP------ 458
GNPHF+C ARVLVKPY+EK ++ D+ + + DG +LH +
Sbjct: 424 GNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQH 483
Query: 459 RACNNSRLLRKQ-----LMEEHEQAIELERRRLSEMQL 491
N +LR++ E +QAIEL RRL ++QL
Sbjct: 484 SNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQL 521
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 123/263 (46%), Gaps = 54/263 (20%)
Query: 1 MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60
MD E+TK V++RIQ L+P++ +KI+G LL+QDHG+++MIRLAF P+ L++S++ +A+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LGLGKPTVSPPISPASVADLPLQFAPF-----------SPASTRPVSSPASMRAAASPFW 109
L L P P S +V P +PF +P+ + +S S A A PF
Sbjct: 61 LALLPPPPPPSSSSPTV---PAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFS 117
Query: 110 DPQMAADQQQQVNSIEFVQPGYSDTAA----------------EDFCLQNQMQFLTLEDQ 153
+ D+ E + P S A +DF LQ Q+ FL E
Sbjct: 118 RSNGSVDEVVGAGE-ELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLN-EGG 175
Query: 154 FDSVNSVNSDFSSSYFYPEP---------ALGHVRTS---RRSPSLPE----------FP 191
+ + + + P P LG RRS S+ E F
Sbjct: 176 VNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDGFG 235
Query: 192 VKVCHYFNKGFCKHGNNCRYFHG 214
K C Y+ +GFCK+G++CR+ HG
Sbjct: 236 WKPCLYYARGFCKNGSSCRFVHG 258
>sp|Q6CT50|CWC2_KLULA Pre-mRNA-splicing factor CWC2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC2 PE=3 SV=1
Length = 337
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 189 EFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQI 224
E + C YF KG C G NCRY H P P+ F+++
Sbjct: 68 EGRIHFCLYFAKGMCCLGKNCRYLHHIPEPDDFARL 103
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 196 HYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240
+Y N+G CK G NC++ H P + + S NAN + ++ +++S
Sbjct: 165 YYMNRGICKFGTNCKFDHPDPGSDHEKWVVSSNANQVSSQVNIYS 209
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 189
Query: 418 LV 419
V
Sbjct: 190 RV 191
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 189
Query: 418 LV 419
V
Sbjct: 190 RV 191
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 189
Query: 418 LV 419
V
Sbjct: 190 RV 191
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 189
Query: 418 LV 419
V
Sbjct: 190 RV 191
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 362 TEQDVSNYFSKFGPVQDVRIP----CQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+ + YF +FG ++ + +P ++R F F+TF E VK++L K H V G++
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 418 LVK 420
+K
Sbjct: 225 EIK 227
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 362 TEQDVSNYFSKFGPVQDVRIP----CQQKRMFGFVTFVFAETVKQIL 404
+++D+ +YF+KFG V D I + R FGF+ F A +V+++L
Sbjct: 81 SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 127
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 360 TFTEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGA 415
T T+++ YF +GPV DV I Q R FGFV+F + V +L K H + G
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGK 178
Query: 416 RVLVK 420
+V VK
Sbjct: 179 QVEVK 183
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240
R P+ PE ++C Y G C++G NC Y HG P Q+ P + + H+ S
Sbjct: 166 GREEPADPELKKQLCPYAAMGECRYGENCVYLHGDPCDMCGLQVLHP-VDTCQRSQHIKS 224
Query: 241 PGSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLT 287
+E E ++ +R I + YEK + + G L+
Sbjct: 225 --CIEAHEKDMELSFAVQRSKDIVCGICMEVVYEKTNPSERRFGILS 269
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 194 VCHYFNKGFCKHGNNCRYFHGHPMPE 219
+C YF +G C +G+ CRY H P+ E
Sbjct: 68 ICRYFQRGCCAYGDRCRYEHNKPLQE 93
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 185 PSLPEFP-VKV------CHYFNKGFCKHGNNCRYFH 213
P+ PE P V V C YF G CK G NCRY H
Sbjct: 23 PAFPENPPVGVWTRHVTCRYFIHGVCKEGINCRYSH 58
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 39.7 bits (91), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 339 SDP------GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFG 390
SDP G V R++Y+T + E+DV +F +G V+ VRIP + Q + FG
Sbjct: 741 SDPLRRTPRSGAVYEGRELYVT-NIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFG 799
Query: 391 FVTFVFAETVKQILAKGNPHFVCGARVL 418
+V + + L+ G RVL
Sbjct: 800 YVVMTTNQDAENALSAAGKQL--GNRVL 825
>sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein 19 OS=Oryza sativa
subsp. japonica GN=Os02g0831100 PE=2 SV=2
Length = 647
Score = 39.3 bits (90), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 195 CHYFNKGFCKHGNNCRYFH-----GHPMPESFSQIFSP 227
C+YF KG C G+ C + H G P P+ +++F+P
Sbjct: 115 CYYFQKGMCVKGDRCAFLHLPQATGSPAPQHTTKVFAP 152
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 38.9 bits (89), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+ + YF +FG ++ + +P ++R F F+TF + VK++L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 418 LVK 420
+K
Sbjct: 230 EIK 232
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQIL 404
+++D+ +YF+KFG V D I + R FGF+ F + +V+++L
Sbjct: 87 SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL 133
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 38.9 bits (89), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 346 AGSRQIYLTFPAESTF--------TEQDVSNYFSKFGPVQDVRIPC--QQKRM--FGFVT 393
AG+ L+ P+++ F TE D+S F G +Q +R+P Q R+ FG+VT
Sbjct: 354 AGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
Query: 394 FVFAETVKQILAKGNPHFVCG 414
F ++ K+ + N HF+ G
Sbjct: 414 FSDIDSAKKCVEM-NGHFIAG 433
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 362 TEQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
T++++S YF +FG + D + + R FGFVTF V +L G PH + G +
Sbjct: 19 TQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG-PHTLDGRTI 77
Query: 418 LVKP 421
KP
Sbjct: 78 DPKP 81
>sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NOP4 PE=1 SV=1
Length = 685
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 362 TEQDVSNYFSKFGPVQD---VRIPCQQKRMFGFVTFVFAETVKQILAKG-----NPHFVC 413
T++ ++++FS F P++ V+ ++ R FGFV+F + K+ LAK N H +
Sbjct: 38 TDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHIL- 96
Query: 414 GARVLVKPYREKSR 427
RV + R++S+
Sbjct: 97 --RVDIAKRRDRSK 108
>sp|Q9FL40|C3H53_ARATH Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis
thaliana GN=At5g07060 PE=2 SV=1
Length = 363
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 152 DQFDSVNSVNSDFSSSYFYPEPALGHVRTSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRY 211
D+ D D+ SS+ +P ++ RR+PS + K+C ++ G CK G C +
Sbjct: 117 DEHDPKTRAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSF 176
Query: 212 FHGHPMPES 220
H MPE+
Sbjct: 177 --RHEMPET 183
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
T++D+ +YFSKFG V D + + R FGFV F +E+V +++ + H + G
Sbjct: 109 TKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ-KEHKLNGK-- 165
Query: 418 LVKPYREKS 426
++ P R K+
Sbjct: 166 VIDPKRAKA 174
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 363 EQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAK 406
E+ + YF FG V+ + +P K R F F+TF E VK+I+ K
Sbjct: 195 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 345 VAGSRQIYLTFPAESTF--TEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAE 398
A R+ + F ++ T++D+ +YFSKFG V D + + R FGFV F +E
Sbjct: 90 AAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 399 TVKQILAKGNPHFVCGARVLVKPYREKS 426
+V +++ + H + G ++ P R K+
Sbjct: 150 SVDKVMDQ-KEHKLNGK--VIDPKRAKA 174
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 363 EQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAK 406
E+ + YF FG V+ + +P K R F F+TF E VK+I+ K
Sbjct: 195 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
T++D+ +YFSKFG V D + + R FGFV F +E+V +++ + H + G
Sbjct: 107 TKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ-KEHKLNGK-- 163
Query: 418 LVKPYREKS 426
++ P R K+
Sbjct: 164 VIDPKRAKA 172
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 363 EQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAK 406
E+ + YF FG V+ + +P K R F F+TF E VK+I+ K
Sbjct: 193 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 180 TSRRSPSLPEFPVKV-CHYFNKGFCKHGNNCRYFHGHPMPE 219
R S L + P V C YF +G+C +G+ CRY H P+ +
Sbjct: 74 NCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQ 114
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 194 VCHYFNKGFCKHGNNCRYFH 213
C YF G CK G+NCRY H
Sbjct: 60 TCRYFMHGVCKEGDNCRYSH 79
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 362 TEQDVSNYFSKFGPVQDVRIP----CQQKRMFGFVTFVFAETVKQIL 404
TE+ + YF FG ++++ +P ++R F FVT+ E VK++L
Sbjct: 123 TEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLL 169
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 333 EYSGEKSDPG---------GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRI-- 381
E G+K DP +V +++I++ + T T +DV +YF +FGP++D +
Sbjct: 93 ELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMF 151
Query: 382 --PCQQKRMFGFVTFVFAETVKQI 403
+ R FGFVTF + V ++
Sbjct: 152 DKQTNRHRGFGFVTFQSEDVVDKV 175
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 364 QDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419
+ + +YF ++G + + + ++ R FGFVTF +V ++L +G H + G +V
Sbjct: 43 ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGT-HELDGKKVDP 101
Query: 420 K---PYREKSRLVDR 431
K P R ++V R
Sbjct: 102 KVAFPRRAHPKMVTR 116
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 362 TEQDVSNYFSKFGPVQDVRIP----CQQKRMFGFVTFVFAETVKQIL 404
TE+ + YF FG ++++ +P ++R F FVT+ E VK++L
Sbjct: 123 TEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL 169
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
+++D++ Y S+FG V D I + R FGFV F A +V ++L N H + G
Sbjct: 38 SKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET-NEHKLDGK-- 94
Query: 418 LVKPYREKS 426
L+ P R K+
Sbjct: 95 LIDPKRAKA 103
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQI 403
++++Y++ E TE ++ YF+K+G V I Q+ R FGFVTF ++V Q
Sbjct: 113 TKRLYVSGVRED-HTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQC 171
Query: 404 LAKGNPHFVCGARVLVK 420
+ + H V G R V+
Sbjct: 172 VLQ-KSHMVNGHRCDVR 187
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 194 VCHYFNKGFCKHGNNCRYFHGHPM 217
VC YF +G+C +G+ CRY H P+
Sbjct: 89 VCKYFQRGYCVYGDRCRYEHSKPL 112
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 194 VCHYFNKGFCKHGNNCRYFH 213
C YF G CK G+NCRY H
Sbjct: 60 TCRYFMHGVCKEGDNCRYSH 79
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSP 227
S + P+ E ++C Y G C++G NC Y HG Q+ P
Sbjct: 200 SEKEPTTVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHP 246
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 361 FTEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCG-- 414
F E+++S YF++FG +++VR+ +K R +GF+ FV E N + + G
Sbjct: 102 FHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHL 161
Query: 415 --ARVL------VKPYREKSRLVDRKYVEK 436
RVL K Y+ K R++ K + K
Sbjct: 162 LQVRVLPKGAKIEKLYKYKKRVLVEKGITK 191
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 89 PASTRPVSSPASMRAAASPFWDPQMAADQQQQVNSIEF-VQPGYSDTAAEDFCLQNQMQF 147
P +T P+++P + S +++++ S+E + P Y+ +A F L +
Sbjct: 108 PTNTLPINNPFAGNNNISTL----ATTEKKRKKRSLEVEINPTYTTSA---FSLPLTAEN 160
Query: 148 LTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRTSRRSP-SLPE------FPVKVCHYFN- 199
L Q DS ++ Y P + RR+P LP+ + ++C F
Sbjct: 161 LQKLSQVDSQST-----GLPYTLPIQKTTKLEPCRRAPLQLPQLVNKTLYKTELCESFTI 215
Query: 200 KGFCKHGNNCRYFHG 214
KG+CK+GN C++ HG
Sbjct: 216 KGYCKYGNKCQFAHG 230
>sp|Q4PA86|CWC2_USTMA Pre-mRNA-splicing factor CWC2 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CWC2 PE=3 SV=1
Length = 480
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 178 VRTSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESF 221
R + +P P+ V C +F +G C HG C + H P P +
Sbjct: 112 ARIQQGAPVAPDEAVYCCIHFARGCCPHGAECNFLHRLPRPNDY 155
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 191 PVKVCHYFNKGFCKHGNNCRYFHGHP 216
P +C Y+ KG+C +G CRY H P
Sbjct: 33 PSTICKYYQKGYCAYGTRCRYDHTRP 58
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 36.6 bits (83), Expect = 0.49, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 363 EQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418
EQ + ++FS FGP+ +V + Q+ R FGF+TF E ++ N + G ++
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIR 78
Query: 419 VKPYREKSR 427
V + +R
Sbjct: 79 VDHAGKSAR 87
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+D+ FS++GP+ V + Q+ R F FV F + K+ + + N + G R+
Sbjct: 129 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 188
Query: 418 LV 419
V
Sbjct: 189 RV 190
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 417
TE+D+ FS++GP+ V + Q+ R F FV F + K+ + + N + G R+
Sbjct: 131 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 190
Query: 418 LV 419
V
Sbjct: 191 RV 192
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 363 EQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418
EQ + ++FS FGP+ +V + Q+ R FGF+TF E + N + G ++
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIR 78
Query: 419 V 419
V
Sbjct: 79 V 79
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQIL 404
R IY+ A+ TE+ ++N F FG + D+++P Q+ R F F+ + +E +
Sbjct: 6 RTIYVGGLADEV-TERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64
Query: 405 AKGNPHFVCGARV---LVKPYREK 425
N +CG + L KP R K
Sbjct: 65 DNMNDSELCGRTIRVNLAKPVRVK 88
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 360 TFTEQDVSNYFSKFGPVQDVRIP----CQQKRMFGFVTFVFAE 398
T TE+D+ FSK+GP+ ++ P ++ + F F+TF+F E
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 36.2 bits (82), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 368 NYFSKFGPVQD---VRIPCQQK-RMFGFVTFVFAETVKQILAKGNPHFVCGARVL----V 419
+YFSKFG +++ +R P ++ R FGFVTF +V ++L G PH ++ +
Sbjct: 39 DYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL--GQPHHELDSKTIDPKVA 96
Query: 420 KPYREKSRLVDR 431
P R + ++V R
Sbjct: 97 FPRRAQPKMVTR 108
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAET 399
+V +++I++ + +T E DV YF +FG V+D + + R FGFVTF +
Sbjct: 105 MVTRTKKIFVGGLSANTVVE-DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 163
Query: 400 VKQI 403
V+++
Sbjct: 164 VEKV 167
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 36.2 bits (82), Expect = 0.74, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 363 EQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418
EQ + FSK+G +Q+V + ++ R FGFVTF E K +A N V G ++
Sbjct: 19 EQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIR 78
Query: 419 V 419
V
Sbjct: 79 V 79
>sp|Q9FNZ1|C3H63_ARATH Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis
thaliana GN=ZFWD2 PE=2 SV=1
Length = 443
Score = 36.2 bits (82), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 193 KVCHYFNKGFCKHGNNCRYFHGHPMPESFSQI 224
KVC+++ G C +G+ CRY H ESF+ +
Sbjct: 113 KVCNFWVDGNCTYGDKCRYLHCWSKGESFALL 144
>sp|Q8SRU2|SFR_ENCCU Probable splicing factor ECU05_1440 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU05_1440 PE=1 SV=1
Length = 301
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421
+E+ + YF +FG V DV + K +GF+ F ++ ++L + H + GA + V+
Sbjct: 13 SEEQIKEYFGQFGEVTDVSL----KGTYGFLNFDSEGSITRVLNQ-RTHSIDGAPISVER 67
Query: 422 YREKSRLVDRKYVEK 436
+ R +D +Y ++
Sbjct: 68 ANGRKRPLDGEYHDR 82
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 362 TEQDVSNYFSKFGPVQDVRIP----CQQKRMFGFVTFVFAETVKQIL 404
+E+ + YF FG ++++ +P ++R F F+T+ E VK++L
Sbjct: 245 SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 291
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAK 406
I L P ++T EQD+ +YFS FG V V++ K + FGFV F ET +++++
Sbjct: 108 IVLGLPWKTT--EQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQ 165
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 368 NYFSKFGPVQD---VRIPCQQK-RMFGFVTFVFAETVKQILAKGNPHFVCGARVL----V 419
+YFSKFG +++ +R P ++ R FGFVTF +V ++L G PH ++ +
Sbjct: 39 DYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL--GQPHHELDSKTIDPKVA 96
Query: 420 KPYREKSRLVDR 431
P R + ++V R
Sbjct: 97 FPRRAQPKMVTR 108
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAET 399
+V +++I++ + +T E DV YF +FG V+D + + R FGFVTF +
Sbjct: 105 MVTRTKKIFVGGLSANTVVE-DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 163
Query: 400 VKQI 403
V+++
Sbjct: 164 VEKV 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,233,066
Number of Sequences: 539616
Number of extensions: 8859889
Number of successful extensions: 25185
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 24909
Number of HSP's gapped (non-prelim): 352
length of query: 543
length of database: 191,569,459
effective HSP length: 122
effective length of query: 421
effective length of database: 125,736,307
effective search space: 52934985247
effective search space used: 52934985247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)