Query 009126
Match_columns 543
No_of_seqs 363 out of 1817
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 2.8E-15 6E-20 139.3 11.7 84 343-427 29-116 (144)
2 KOG0153 Predicted RNA-binding 99.5 2.2E-14 4.8E-19 147.4 11.0 76 346-424 226-302 (377)
3 KOG0144 RNA-binding protein CU 99.5 7.7E-15 1.7E-19 154.0 6.1 152 272-433 54-214 (510)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 6.3E-14 1.4E-18 144.9 11.0 79 348-427 269-351 (352)
5 KOG0149 Predicted RNA-binding 99.5 3.7E-14 8E-19 139.7 6.9 76 347-424 11-90 (247)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.7E-13 5.8E-18 140.2 11.0 78 348-426 3-84 (352)
7 TIGR01645 half-pint poly-U bin 99.5 4.3E-13 9.4E-18 149.3 13.3 79 347-426 203-285 (612)
8 TIGR01659 sex-lethal sex-letha 99.5 1.9E-13 4.1E-18 143.8 9.8 152 345-525 104-260 (346)
9 PF00076 RRM_1: RNA recognitio 99.4 3E-13 6.6E-18 107.0 8.5 67 351-418 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.4 5.9E-13 1.3E-17 140.1 12.5 82 347-429 192-279 (346)
11 KOG0125 Ataxin 2-binding prote 99.4 2.2E-13 4.7E-18 139.3 8.7 79 346-425 94-174 (376)
12 TIGR01628 PABP-1234 polyadenyl 99.4 6.2E-13 1.3E-17 147.0 10.9 83 346-429 283-368 (562)
13 PLN03120 nucleic acid binding 99.4 9.6E-13 2.1E-17 132.7 10.6 76 348-425 4-80 (260)
14 TIGR01645 half-pint poly-U bin 99.4 1.3E-12 2.8E-17 145.6 11.4 161 347-525 106-271 (612)
15 KOG0148 Apoptosis-promoting RN 99.4 1.6E-12 3.4E-17 130.4 8.3 149 272-428 82-241 (321)
16 KOG0147 Transcriptional coacti 99.3 1.3E-12 2.8E-17 140.9 8.0 152 270-428 197-361 (549)
17 TIGR01628 PABP-1234 polyadenyl 99.3 7.1E-12 1.5E-16 138.6 13.3 83 345-428 175-264 (562)
18 PLN03213 repressor of silencin 99.3 5.3E-12 1.1E-16 134.5 9.7 78 347-425 9-88 (759)
19 TIGR01622 SF-CC1 splicing fact 99.3 2.4E-11 5.1E-16 130.5 13.9 78 346-424 184-265 (457)
20 KOG0124 Polypyrimidine tract-b 99.3 3.1E-12 6.7E-17 132.3 6.6 166 350-537 115-292 (544)
21 KOG0111 Cyclophilin-type pepti 99.3 1.7E-12 3.6E-17 127.0 4.0 79 347-426 9-91 (298)
22 KOG0113 U1 small nuclear ribon 99.3 1.4E-11 3E-16 125.0 10.6 88 337-425 90-181 (335)
23 PF14259 RRM_6: RNA recognitio 99.3 1.7E-11 3.6E-16 98.4 8.3 67 351-418 1-70 (70)
24 smart00362 RRM_2 RNA recogniti 99.3 3.5E-11 7.5E-16 93.3 9.8 70 350-420 1-72 (72)
25 KOG0107 Alternative splicing f 99.3 1.4E-11 2.9E-16 117.2 8.2 79 347-427 9-87 (195)
26 KOG0148 Apoptosis-promoting RN 99.2 8.4E-12 1.8E-16 125.2 6.9 79 348-427 62-144 (321)
27 PLN03121 nucleic acid binding 99.2 3.2E-11 6.9E-16 120.3 10.7 76 347-424 4-80 (243)
28 KOG0122 Translation initiation 99.2 4.5E-11 9.8E-16 118.6 8.8 78 347-425 188-269 (270)
29 COG0724 RNA-binding proteins ( 99.2 7.8E-11 1.7E-15 112.2 10.1 76 348-424 115-194 (306)
30 TIGR01648 hnRNP-R-Q heterogene 99.2 7.1E-11 1.5E-15 131.4 11.3 77 346-427 231-309 (578)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 8.4E-11 1.8E-15 128.4 11.2 79 346-426 273-352 (481)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.1E-10 2.4E-15 126.9 11.8 79 347-426 294-376 (509)
33 smart00360 RRM RNA recognition 99.2 1.1E-10 2.4E-15 89.9 8.5 67 353-420 1-71 (71)
34 KOG4205 RNA-binding protein mu 99.2 3.2E-11 7E-16 125.0 6.2 81 347-429 96-180 (311)
35 KOG4207 Predicted splicing fac 99.1 4.9E-11 1.1E-15 116.0 6.4 77 347-424 12-92 (256)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.5E-10 3.2E-15 126.6 10.8 76 347-425 1-78 (481)
37 TIGR01622 SF-CC1 splicing fact 99.1 2.3E-10 5.1E-15 122.9 11.7 78 346-425 87-168 (457)
38 TIGR01648 hnRNP-R-Q heterogene 99.1 1.4E-10 3.1E-15 129.0 10.1 77 347-424 57-137 (578)
39 cd00590 RRM RRM (RNA recogniti 99.1 4.6E-10 1E-14 87.4 9.8 71 350-421 1-74 (74)
40 PF13893 RRM_5: RNA recognitio 99.1 2.8E-10 6E-15 88.3 8.3 56 366-422 1-56 (56)
41 KOG0131 Splicing factor 3b, su 99.1 1E-10 2.2E-15 111.9 5.8 76 347-423 8-87 (203)
42 KOG0117 Heterogeneous nuclear 99.0 8E-10 1.7E-14 117.2 10.1 83 344-431 255-337 (506)
43 KOG0121 Nuclear cap-binding pr 99.0 6.5E-10 1.4E-14 101.3 6.6 77 346-423 34-114 (153)
44 KOG0108 mRNA cleavage and poly 99.0 1.1E-09 2.4E-14 118.1 9.3 82 345-427 14-100 (435)
45 KOG4205 RNA-binding protein mu 99.0 2.8E-10 6.1E-15 118.1 4.2 80 347-428 5-88 (311)
46 smart00361 RRM_1 RNA recogniti 99.0 2.1E-09 4.5E-14 87.6 7.9 57 363-419 2-69 (70)
47 KOG0127 Nucleolar protein fibr 98.9 1.7E-09 3.7E-14 116.9 8.6 82 348-430 117-201 (678)
48 KOG0144 RNA-binding protein CU 98.9 3.6E-09 7.8E-14 111.9 9.4 80 346-426 32-118 (510)
49 KOG0117 Heterogeneous nuclear 98.9 6.4E-09 1.4E-13 110.4 11.2 79 346-425 81-164 (506)
50 KOG0114 Predicted RNA-binding 98.9 6.4E-09 1.4E-13 91.8 9.3 79 346-425 16-95 (124)
51 KOG0126 Predicted RNA-binding 98.9 3.6E-10 7.7E-15 108.2 0.0 75 346-421 33-111 (219)
52 KOG0145 RNA-binding protein EL 98.8 2E-08 4.3E-13 100.8 11.4 81 346-427 39-123 (360)
53 KOG0127 Nucleolar protein fibr 98.8 2.3E-08 5.1E-13 108.3 12.5 79 349-428 293-381 (678)
54 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.1E-08 2.4E-13 111.4 10.0 75 345-423 172-258 (509)
55 KOG0109 RNA-binding protein LA 98.8 4.6E-09 9.9E-14 106.7 6.1 76 346-426 76-151 (346)
56 KOG0105 Alternative splicing f 98.8 6.7E-09 1.5E-13 99.8 6.8 78 347-425 5-83 (241)
57 KOG0145 RNA-binding protein EL 98.8 1.3E-08 2.8E-13 102.1 8.9 76 349-425 279-358 (360)
58 KOG0132 RNA polymerase II C-te 98.8 1E-08 2.2E-13 114.6 7.5 80 347-429 420-499 (894)
59 KOG0130 RNA-binding protein RB 98.8 9.2E-09 2E-13 94.6 5.4 77 350-427 74-154 (170)
60 KOG0109 RNA-binding protein LA 98.7 1.4E-08 3E-13 103.3 6.3 75 349-428 3-77 (346)
61 KOG0123 Polyadenylate-binding 98.7 1.9E-08 4.2E-13 107.0 7.8 77 351-429 79-157 (369)
62 KOG0131 Splicing factor 3b, su 98.7 1.4E-08 3.1E-13 97.4 5.8 83 346-429 94-181 (203)
63 KOG4206 Spliceosomal protein s 98.7 5.9E-08 1.3E-12 95.7 7.9 84 347-431 8-96 (221)
64 KOG0146 RNA-binding protein ET 98.6 5.4E-08 1.2E-12 98.0 6.6 88 346-434 17-110 (371)
65 KOG0146 RNA-binding protein ET 98.6 3.3E-08 7.2E-13 99.5 4.8 83 344-427 281-367 (371)
66 KOG0415 Predicted peptidyl pro 98.6 7.1E-08 1.5E-12 100.2 6.8 81 343-424 234-318 (479)
67 KOG0123 Polyadenylate-binding 98.5 1.5E-07 3.3E-12 100.2 6.8 81 346-427 268-351 (369)
68 KOG0124 Polypyrimidine tract-b 98.4 2.6E-07 5.6E-12 96.4 6.1 78 347-425 209-290 (544)
69 KOG4212 RNA-binding protein hn 98.4 5.2E-07 1.1E-11 96.0 8.3 78 346-424 42-123 (608)
70 KOG0110 RNA-binding protein (R 98.4 7.9E-07 1.7E-11 99.1 8.4 73 350-423 517-596 (725)
71 KOG0151 Predicted splicing reg 98.4 1.2E-06 2.7E-11 97.5 9.4 80 345-425 171-257 (877)
72 KOG4661 Hsp27-ERE-TATA-binding 98.3 6.6E-07 1.4E-11 97.5 6.5 76 348-424 405-484 (940)
73 KOG0116 RasGAP SH3 binding pro 98.3 1.8E-06 3.8E-11 93.3 8.0 76 348-425 288-367 (419)
74 KOG0110 RNA-binding protein (R 98.3 6.6E-07 1.4E-11 99.7 4.5 79 348-427 613-695 (725)
75 KOG0106 Alternative splicing f 98.2 1.4E-06 3E-11 86.4 4.1 72 349-425 2-73 (216)
76 KOG4454 RNA binding protein (R 98.2 8.1E-07 1.7E-11 87.6 2.1 79 345-424 6-86 (267)
77 KOG4208 Nucleolar RNA-binding 98.1 8.7E-06 1.9E-10 79.7 7.4 81 346-427 47-132 (214)
78 KOG0533 RRM motif-containing p 97.9 2.7E-05 5.9E-10 78.7 8.3 79 346-425 81-162 (243)
79 KOG4212 RNA-binding protein hn 97.9 2.5E-05 5.5E-10 83.5 7.0 73 346-421 534-607 (608)
80 KOG4209 Splicing factor RNPS1, 97.8 2.4E-05 5.2E-10 78.6 5.2 78 346-425 99-180 (231)
81 KOG0226 RNA-binding proteins [ 97.8 1.7E-05 3.6E-10 80.0 3.8 75 348-423 190-268 (290)
82 KOG4660 Protein Mei2, essentia 97.7 2.3E-05 5E-10 85.8 3.9 72 345-418 72-143 (549)
83 KOG2135 Proteins containing th 97.6 0.00017 3.6E-09 78.0 8.7 77 347-426 371-447 (526)
84 KOG0147 Transcriptional coacti 97.6 2.6E-05 5.7E-10 85.2 2.3 176 348-540 179-362 (549)
85 KOG1457 RNA binding protein (c 97.6 0.00031 6.8E-09 69.9 8.8 87 347-434 33-127 (284)
86 PF00642 zf-CCCH: Zinc finger 97.5 1.8E-05 3.9E-10 53.7 -0.1 23 192-214 3-26 (27)
87 KOG1190 Polypyrimidine tract-b 97.4 0.00055 1.2E-08 73.1 8.9 78 348-426 297-374 (492)
88 KOG1548 Transcription elongati 97.4 0.0005 1.1E-08 72.0 7.7 76 348-424 134-220 (382)
89 KOG1855 Predicted RNA-binding 97.1 0.00043 9.4E-09 74.2 4.2 124 284-410 161-309 (484)
90 smart00356 ZnF_C3H1 zinc finge 97.1 0.00027 5.9E-09 47.0 1.7 22 193-214 5-26 (27)
91 KOG4211 Splicing factor hnRNP- 97.0 0.0021 4.6E-08 70.0 8.5 78 346-426 8-87 (510)
92 PF04059 RRM_2: RNA recognitio 97.0 0.004 8.7E-08 54.9 8.3 77 349-426 2-88 (97)
93 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0032 7E-08 49.3 5.9 52 349-404 2-53 (53)
94 KOG4210 Nuclear localization s 96.8 0.00079 1.7E-08 69.7 2.8 81 347-429 183-268 (285)
95 PF11608 Limkain-b1: Limkain b 96.7 0.0046 9.9E-08 53.3 6.6 71 349-426 3-78 (90)
96 KOG0106 Alternative splicing f 96.7 0.00098 2.1E-08 66.4 2.9 69 348-421 99-167 (216)
97 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0092 2E-07 52.9 8.0 71 349-424 7-91 (100)
98 COG5175 MOT2 Transcriptional r 96.6 0.0052 1.1E-07 64.4 6.9 79 347-425 113-203 (480)
99 PF08777 RRM_3: RNA binding mo 96.5 0.0036 7.7E-08 55.7 4.5 55 351-408 4-58 (105)
100 KOG0120 Splicing factor U2AF, 96.4 0.0044 9.6E-08 68.5 6.0 81 347-428 288-372 (500)
101 KOG1548 Transcription elongati 96.3 0.031 6.7E-07 59.0 10.6 92 334-426 252-353 (382)
102 KOG0120 Splicing factor U2AF, 96.3 0.011 2.4E-07 65.5 7.6 62 364-425 424-492 (500)
103 PF14608 zf-CCCH_2: Zinc finge 96.2 0.0025 5.3E-08 40.1 1.4 19 194-214 1-19 (19)
104 KOG4206 Spliceosomal protein s 96.2 0.019 4.1E-07 57.3 8.2 77 345-423 143-220 (221)
105 KOG4211 Splicing factor hnRNP- 96.1 0.017 3.7E-07 63.2 7.9 75 347-423 102-180 (510)
106 KOG0129 Predicted RNA-binding 95.9 0.033 7.1E-07 61.3 9.0 80 345-426 367-456 (520)
107 KOG1995 Conserved Zn-finger pr 95.8 0.011 2.5E-07 62.3 4.8 82 345-427 63-156 (351)
108 KOG2185 Predicted RNA-processi 95.8 0.0037 8E-08 66.8 1.3 26 192-217 140-165 (486)
109 KOG1457 RNA binding protein (c 95.6 0.012 2.7E-07 58.8 4.2 66 346-412 208-273 (284)
110 KOG0129 Predicted RNA-binding 95.6 0.029 6.3E-07 61.8 7.2 71 347-422 258-338 (520)
111 KOG1456 Heterogeneous nuclear 95.5 0.052 1.1E-06 57.9 8.6 79 346-425 285-363 (494)
112 smart00517 PolyA C-terminal do 95.4 0.016 3.4E-07 47.5 3.4 51 8-61 11-61 (64)
113 PF00658 PABP: Poly-adenylate 95.4 0.0095 2.1E-07 49.8 2.1 50 8-60 22-71 (72)
114 PF08952 DUF1866: Domain of un 95.2 0.069 1.5E-06 50.4 7.2 77 342-424 21-106 (146)
115 KOG4849 mRNA cleavage factor I 94.9 0.026 5.5E-07 59.7 4.1 74 350-424 82-161 (498)
116 KOG2314 Translation initiation 94.7 0.04 8.7E-07 61.3 5.0 73 349-423 59-142 (698)
117 KOG3152 TBP-binding protein, a 94.5 0.022 4.7E-07 58.0 2.3 68 348-416 74-157 (278)
118 KOG1190 Polypyrimidine tract-b 94.3 0.098 2.1E-06 56.4 6.7 78 345-423 411-489 (492)
119 KOG2202 U2 snRNP splicing fact 94.0 0.024 5.3E-07 57.6 1.4 59 364-422 83-145 (260)
120 KOG1677 CCCH-type Zn-finger pr 93.8 0.031 6.7E-07 58.4 2.0 28 188-215 173-201 (332)
121 KOG1996 mRNA splicing factor [ 92.8 0.27 5.8E-06 51.2 6.7 63 363-425 300-367 (378)
122 KOG4307 RNA binding protein RB 91.9 0.12 2.6E-06 58.8 3.3 81 346-427 432-516 (944)
123 KOG2891 Surface glycoprotein [ 90.1 0.34 7.4E-06 50.1 4.2 38 346-383 147-195 (445)
124 PF10309 DUF2414: Protein of u 90.0 1.4 3.1E-05 36.0 6.9 55 348-407 5-62 (62)
125 KOG4285 Mitotic phosphoprotein 89.9 0.69 1.5E-05 48.4 6.2 76 349-429 198-274 (350)
126 KOG0112 Large RNA-binding prot 89.9 0.48 1E-05 55.5 5.6 83 345-430 452-536 (975)
127 PF04847 Calcipressin: Calcipr 89.4 1.1 2.3E-05 44.0 6.9 63 362-426 8-72 (184)
128 KOG2068 MOT2 transcription fac 89.1 0.15 3.1E-06 53.9 0.6 78 349-426 78-164 (327)
129 KOG4307 RNA binding protein RB 88.9 1.1 2.5E-05 51.3 7.4 73 348-421 867-943 (944)
130 KOG0112 Large RNA-binding prot 88.8 0.097 2.1E-06 61.0 -0.8 81 345-426 369-452 (975)
131 KOG1039 Predicted E3 ubiquitin 88.6 0.16 3.4E-06 54.2 0.5 24 193-216 9-32 (344)
132 KOG1456 Heterogeneous nuclear 88.2 3.2 6.9E-05 44.8 9.8 78 348-426 120-200 (494)
133 KOG1595 CCCH-type Zn-finger pr 87.7 0.34 7.3E-06 54.0 2.4 35 180-214 224-258 (528)
134 KOG2193 IGF-II mRNA-binding pr 87.4 0.5 1.1E-05 51.4 3.4 74 349-429 2-80 (584)
135 KOG0128 RNA-binding protein SA 87.2 0.074 1.6E-06 61.6 -3.1 71 350-421 669-743 (881)
136 KOG4676 Splicing factor, argin 87.0 0.99 2.2E-05 48.7 5.3 75 349-425 8-89 (479)
137 KOG0128 RNA-binding protein SA 86.9 0.3 6.5E-06 56.8 1.5 76 348-424 736-814 (881)
138 KOG0115 RNA-binding protein p5 85.3 0.72 1.6E-05 47.3 3.1 75 349-424 32-113 (275)
139 KOG0105 Alternative splicing f 85.0 4.3 9.4E-05 40.2 8.1 70 349-422 116-187 (241)
140 KOG2416 Acinus (induces apopto 84.7 1.2 2.7E-05 50.2 4.8 78 344-424 440-521 (718)
141 PF15023 DUF4523: Protein of u 84.2 4.4 9.5E-05 38.6 7.5 74 345-423 83-160 (166)
142 PF10650 zf-C3H1: Putative zin 84.2 0.53 1.1E-05 31.2 1.0 19 194-213 2-21 (23)
143 PF12872 OST-HTH: OST-HTH/LOTU 84.0 1.4 3.1E-05 35.7 3.8 68 243-321 2-72 (74)
144 KOG1365 RNA-binding protein Fu 83.3 1.7 3.8E-05 46.9 5.0 71 350-422 163-240 (508)
145 KOG2253 U1 snRNP complex, subu 81.5 1.6 3.4E-05 49.9 4.1 101 312-422 8-108 (668)
146 KOG1365 RNA-binding protein Fu 80.1 2.1 4.4E-05 46.3 4.2 75 348-423 280-360 (508)
147 KOG1763 Uncharacterized conser 79.0 0.77 1.7E-05 47.9 0.6 23 193-215 93-115 (343)
148 KOG2494 C3H1-type Zn-finger pr 78.0 0.78 1.7E-05 48.4 0.4 23 192-214 37-60 (331)
149 KOG1040 Polyadenylation factor 76.6 1.3 2.7E-05 47.2 1.4 23 192-214 105-128 (325)
150 COG5084 YTH1 Cleavage and poly 74.3 1.5 3.2E-05 45.8 1.2 24 192-215 134-158 (285)
151 PF08675 RNA_bind: RNA binding 74.2 13 0.00029 32.3 6.8 55 348-408 9-63 (87)
152 KOG1492 C3H1-type Zn-finger pr 72.6 1.5 3.3E-05 44.1 0.8 22 193-214 207-229 (377)
153 KOG4210 Nuclear localization s 70.6 2.4 5.3E-05 44.2 1.8 79 347-426 87-169 (285)
154 PF03880 DbpA: DbpA RNA bindin 69.8 15 0.00033 30.3 6.1 59 359-422 11-74 (74)
155 KOG1040 Polyadenylation factor 67.7 2.3 4.9E-05 45.3 0.9 26 189-214 74-99 (325)
156 KOG1677 CCCH-type Zn-finger pr 64.0 3.2 7E-05 43.4 1.2 27 188-214 128-156 (332)
157 PF03467 Smg4_UPF3: Smg-4/UPF3 52.7 14 0.0003 35.9 3.3 66 348-414 7-82 (176)
158 KOG4574 RNA-binding protein (c 51.3 11 0.00024 44.5 2.8 78 345-425 295-374 (1007)
159 COG5152 Uncharacterized conser 51.3 6 0.00013 39.4 0.6 24 191-214 140-164 (259)
160 PF07576 BRAP2: BRCA1-associat 49.7 84 0.0018 28.4 7.6 65 349-414 14-81 (110)
161 KOG2494 C3H1-type Zn-finger pr 49.5 7.8 0.00017 41.1 1.1 27 187-214 66-92 (331)
162 COG5084 YTH1 Cleavage and poly 49.5 8.4 0.00018 40.4 1.3 25 191-215 103-127 (285)
163 KOG1492 C3H1-type Zn-finger pr 47.9 7 0.00015 39.5 0.4 23 192-215 261-283 (377)
164 KOG2591 c-Mpl binding protein, 44.7 29 0.00064 39.4 4.6 67 348-418 174-245 (684)
165 COG5063 CTH1 CCCH-type Zn-fing 41.8 13 0.00029 39.2 1.4 26 189-214 271-297 (351)
166 KOG4454 RNA binding protein (R 40.5 5.5 0.00012 40.3 -1.5 63 348-411 80-149 (267)
167 COG5252 Uncharacterized conser 39.7 11 0.00024 38.5 0.4 22 193-214 86-107 (299)
168 PF11767 SET_assoc: Histone ly 33.8 2.7E+02 0.0059 23.0 7.6 56 359-419 10-65 (66)
169 PF15519 RBM39linker: linker b 32.8 20 0.00043 30.1 0.8 16 523-538 52-67 (73)
170 KOG2318 Uncharacterized conser 27.4 2E+02 0.0043 33.3 7.5 73 345-418 171-299 (650)
171 PF15513 DUF4651: Domain of un 26.8 99 0.0021 25.5 3.8 19 364-382 9-27 (62)
172 KOG0804 Cytoplasmic Zn-finger 26.6 1.6E+02 0.0035 32.9 6.6 67 347-414 73-142 (493)
173 KOG2333 Uncharacterized conser 25.6 45 0.00097 37.6 2.2 23 194-216 116-139 (614)
174 KOG2202 U2 snRNP splicing fact 25.4 33 0.00071 35.5 1.0 27 188-214 148-174 (260)
175 KOG4660 Protein Mei2, essentia 24.8 78 0.0017 36.0 3.8 75 350-425 390-473 (549)
176 KOG1813 Predicted E3 ubiquitin 23.1 30 0.00065 36.5 0.3 26 189-214 183-209 (313)
177 PF03468 XS: XS domain; Inter 21.8 55 0.0012 29.8 1.6 43 362-405 30-75 (116)
178 KOG1039 Predicted E3 ubiquitin 21.7 46 0.001 35.9 1.3 27 189-215 246-274 (344)
179 PHA02887 EGF-like protein; Pro 20.7 45 0.00097 30.8 0.8 22 192-214 83-104 (126)
180 PF02714 DUF221: Domain of unk 20.5 89 0.0019 32.3 3.2 35 390-426 1-35 (325)
181 KOG4019 Calcineurin-mediated s 20.1 61 0.0013 32.1 1.7 75 350-426 12-91 (193)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=2.8e-15 Score=139.33 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
+.....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|+
T Consensus 29 ~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 29 SLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33445679999999 999999999999999999999999976 6899999999999999999999999999999999
Q ss_pred Eeecccccc
Q 009126 419 VKPYREKSR 427 (543)
Q Consensus 419 Vk~Ak~K~~ 427 (543)
|+++.++..
T Consensus 108 V~~a~~~~~ 116 (144)
T PLN03134 108 VNPANDRPS 116 (144)
T ss_pred EEeCCcCCC
Confidence 999987654
No 2
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.2e-14 Score=147.39 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhc-CCeEEcCeEEEEeeccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYRE 424 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~Gr~V~Vk~Ak~ 424 (543)
...++||||+| ...++|.+|+++|.+||+|+.|++.. .+|+|||+|.+.++|+.|.++. |...|+|++|.|.|..+
T Consensus 226 ~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34679999999 77999999999999999999999988 7889999999999999988875 88889999999999988
No 3
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=7.7e-15 Score=154.03 Aligned_cols=152 Identities=23% Similarity=0.367 Sum_probs=107.8
Q ss_pred HHHhhccccccccccccccccccCCccHHHHHHHhhhccccccCCCCCcccccccccc---cccccCCCCCCCCCCCCCC
Q 009126 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVP---KYLEYSGEKSDPGGIVAGS 348 (543)
Q Consensus 272 Yf~~yg~~Lq~~~~~~esqR~~k~G~s~~kll~rlknsi~~ier~~gQ~~vvl~ed~~---K~~~~r~dr~d~g~~~~~~ 348 (543)
+||+||.+.+..-....+++ ..+||=+.++-.|- ...+.|...|.+. ++.+...+ ||.+ +++.. ....
T Consensus 54 lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk-~a~~a~~Alhn~k-tlpG~~~pvqvk~Ad--~E~er----~~~e 124 (510)
T KOG0144|consen 54 LFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRK-EADEAINALHNQK-TLPGMHHPVQVKYAD--GERER----IVEE 124 (510)
T ss_pred HHHHhCceeEEEeecccccC-cccceEEEEeccHH-HHHHHHHHhhccc-ccCCCCcceeecccc--hhhhc----cccc
Confidence 89999999998877777766 55676433332222 1222222222221 11111111 3332 22221 1557
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEE---cCeEEEEeec
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLVKPY 422 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i---~Gr~V~Vk~A 422 (543)
+|||||-| +..+||.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..|++.||+..- |...+.|+||
T Consensus 125 ~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 125 RKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred hhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 89999999 999999999999999999999999996 8999999999999999999999987654 5678999999
Q ss_pred cccccchhhHh
Q 009126 423 REKSRLVDRKY 433 (543)
Q Consensus 423 k~K~~~~~~~~ 433 (543)
.++..+..+..
T Consensus 204 Dtqkdk~~~~l 214 (510)
T KOG0144|consen 204 DTQKDKDGKRL 214 (510)
T ss_pred ccCCCchHHHH
Confidence 98876655554
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.51 E-value=6.3e-14 Score=144.92 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
..+|||+|| ++++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.|||..|+||.|+|.++.
T Consensus 269 ~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 458999999 899999999999999999999999986 589999999999999999999999999999999999998
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
.|.+
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 8764
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3.7e-14 Score=139.67 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..+|||||+| .|.++.|+|++||++||+|+++.|+.| ++||||||||.+.+.|.+|++. ...+|+||+..|+.|
T Consensus 11 ~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 4569999999 999999999999999999999999997 8999999999999999999999 678999999999876
Q ss_pred cc
Q 009126 423 RE 424 (543)
Q Consensus 423 k~ 424 (543)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=2.7e-13 Score=140.21 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
..+|||++| +.++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..+.|+.|.|.+++
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 569999999 999999999999999999999999986 588999999999999999999999999999999999987
Q ss_pred ccc
Q 009126 424 EKS 426 (543)
Q Consensus 424 ~K~ 426 (543)
++.
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 764
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.45 E-value=4.3e-13 Score=149.34 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++++++++|+++|+.||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 999999999999999999999999986 58999999999999999999999999999999999998
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
..++
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8644
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=1.9e-13 Score=143.81 Aligned_cols=152 Identities=15% Similarity=0.182 Sum_probs=105.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||+..+.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 356789999999 999999999999999999999999986 678999999999999999999999999999999999
Q ss_pred eccccccchhhHhhhhcCCCCccCCCCCCCccccccchhhcccHHHHhhHHHHHHHHhhhHhHHHHHhhh-hccCCCCCC
Q 009126 421 PYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQ-LACKPMNHH 499 (543)
Q Consensus 421 ~Ak~K~~~~~~~~~~~~~~~~~~sp~~~~~d~~l~~~~R~~~n~r~lrrk~~E~~~q~lEl~~r~l~~~q-~~~k~~~~~ 499 (543)
++++...... . ...-+..++....+ +.|+.-. ++ -. ++.... +.++.++..
T Consensus 183 ~a~p~~~~~~-------~-----------~~lfV~nLp~~vte-e~L~~~F-~~-------fG-~V~~v~i~~d~~tg~~ 234 (346)
T TIGR01659 183 YARPGGESIK-------D-----------TNLYVTNLPRTITD-DQLDTIF-GK-------YG-QIVQKNILRDKLTGTP 234 (346)
T ss_pred cccccccccc-------c-----------ceeEEeCCCCcccH-HHHHHHH-Hh-------cC-CEEEEEEeecCCCCcc
Confidence 9876432110 0 00001112222222 2222211 11 00 111111 123445566
Q ss_pred CCCCCCccccccchHHHHhhhcchhe
Q 009126 500 SYFGYSMDELQPLQNKVISRLLSVSI 525 (543)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
.-|+|+.-+..-...++|.+|.+..+
T Consensus 235 kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 235 RGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 67888888888888888888888755
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=3e-13 Score=106.99 Aligned_cols=67 Identities=21% Similarity=0.474 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 351 IfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
|||+|| ++++|+++|+++|++||.|..+.++.+ +++|||||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 999999999999999999999999884 6799999999999999999999999999999885
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.44 E-value=5.9e-13 Score=140.07 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcC--eEEEEe
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVK 420 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--r~V~Vk 420 (543)
..++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.+.| +.|.|+
T Consensus 192 ~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3568999999 999999999999999999999999986 568999999999999999999999999977 689999
Q ss_pred eccccccch
Q 009126 421 PYREKSRLV 429 (543)
Q Consensus 421 ~Ak~K~~~~ 429 (543)
+++++.+..
T Consensus 271 ~a~~~~~~~ 279 (346)
T TIGR01659 271 LAEEHGKAK 279 (346)
T ss_pred ECCcccccc
Confidence 998765543
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.2e-13 Score=139.33 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
...++|+|.|| ++.+.|-||+..|.+||+|.+|.|+.. .+||||||||++.++|++|-++++|..|.||+|+|..|.
T Consensus 94 ~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 44679999999 999999999999999999999999995 689999999999999999999999999999999999998
Q ss_pred cc
Q 009126 424 EK 425 (543)
Q Consensus 424 ~K 425 (543)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 77
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.41 E-value=6.2e-13 Score=146.97 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
....+|||+|| ++++|+++|+++|++||.|++|+|+.| ++||||||+|.+.++|.+|+.+||+..++|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44668999999 999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccccch
Q 009126 423 REKSRLV 429 (543)
Q Consensus 423 k~K~~~~ 429 (543)
..|....
T Consensus 362 ~~k~~~~ 368 (562)
T TIGR01628 362 QRKEQRR 368 (562)
T ss_pred cCcHHHH
Confidence 9876543
No 13
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=9.6e-13 Score=132.68 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
.++|||+|| ++.+||++|+++|+.||+|++|+|+.| ..+|||||+|.++++|+.|+. ||+..|+|+.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999 999999999999999999999999997 478999999999999999996 7999999999999997643
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.39 E-value=1.3e-12 Score=145.63 Aligned_cols=161 Identities=14% Similarity=0.223 Sum_probs=107.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...+|||||| +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+||.|+|.+.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3469999999 999999999999999999999999986 68999999999999999999999999999999999864
Q ss_pred cccccchhhHhhhhcCCCCccCCCCCCCccccccchhhcccHHHHhhHHHHHHHHhhhHhHHHHHhhhh-ccCCCCCCCC
Q 009126 423 REKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQL-ACKPMNHHSY 501 (543)
Q Consensus 423 k~K~~~~~~~~~~~~~~~~~~sp~~~~~d~~l~~~~R~~~n~r~lrrk~~E~~~q~lEl~~r~l~~~q~-~~k~~~~~~~ 501 (543)
.......... ...... ...+ .---...++....+ +.|++-+ +.-+. +....+ .++.++.+.-
T Consensus 185 ~~~p~a~~~~--~~~~~~---~~~~--~rLfVgnLp~~vte-edLk~lF--------s~FG~-I~svrl~~D~~tgksKG 247 (612)
T TIGR01645 185 SNMPQAQPII--DMVQEE---AKKF--NRIYVASVHPDLSE-TDIKSVF--------EAFGE-IVKCQLARAPTGRGHKG 247 (612)
T ss_pred cccccccccc--cccccc---cccc--ceEEeecCCCCCCH-HHHHHHH--------hhcCC-eeEEEEEecCCCCCcCC
Confidence 4322110000 000000 0000 00001111222222 2223211 11111 112222 2344566778
Q ss_pred CCCCccccccchHHHHhhhcchhe
Q 009126 502 FGYSMDELQPLQNKVISRLLSVSI 525 (543)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~ 525 (543)
|||...+..-...++|..|+++.+
T Consensus 248 fGFVeFe~~e~A~kAI~amNg~el 271 (612)
T TIGR01645 248 YGFIEYNNLQSQSEAIASMNLFDL 271 (612)
T ss_pred eEEEEECCHHHHHHHHHHhCCCee
Confidence 999999999899999999999987
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.6e-12 Score=130.36 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=107.5
Q ss_pred HHHhhccccccccccccccccccCCccHHHHHHHhhhccccccCCCCCcccccccccc--cccccC-CCCCC--------
Q 009126 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVP--KYLEYS-GEKSD-------- 340 (543)
Q Consensus 272 Yf~~yg~~Lq~~~~~~esqR~~k~G~s~~kll~rlknsi~~ier~~gQ~~vvl~ed~~--K~~~~r-~dr~d-------- 340 (543)
-|.+||++-.++-. .+.+-.+.+||.+..+-.+. +.-+.|+...||- |+...- .|.-++ .+++.
T Consensus 82 aF~pFGevS~akvi-rD~~T~KsKGYgFVSf~~k~-dAEnAI~~MnGqW---lG~R~IRTNWATRKp~e~n~~~ltfdeV 156 (321)
T KOG0148|consen 82 AFAPFGEVSDAKVI-RDMNTGKSKGYGFVSFPNKE-DAENAIQQMNGQW---LGRRTIRTNWATRKPSEMNGKPLTFDEV 156 (321)
T ss_pred HhccccccccceEe-ecccCCcccceeEEeccchH-HHHHHHHHhCCee---eccceeeccccccCccccCCCCccHHHH
Confidence 47788888766522 22333456788766655555 4456666666653 221111 111111 11111
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 341 PGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 341 ~g~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.....+.+.+||||++ ..-+||+++++.|+.||+|.+|||.+ -+||+||.|++.|.|.+||..||+..|.|..|++.
T Consensus 157 ~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 157 YNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred hccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 1345677899999999 66799999999999999999999988 68999999999999999999999999999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
|-++....
T Consensus 234 WGKe~~~~ 241 (321)
T KOG0148|consen 234 WGKEGDDG 241 (321)
T ss_pred ccccCCCC
Confidence 99876543
No 16
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.35 E-value=1.3e-12 Score=140.87 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=106.4
Q ss_pred hhHHHhhccccccccc-cccccccccCCcc-------HHHHHHHhhhccccccCCCCCcccccccccccccc-cCCCCCC
Q 009126 270 MMYYEKYGKTLQAEGY-LTESQRHGKAGYS-------LTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLE-YSGEKSD 340 (543)
Q Consensus 270 ~~Yf~~yg~~Lq~~~~-~~esqR~~k~G~s-------~~kll~rlknsi~~ier~~gQ~~vvl~ed~~K~~~-~r~dr~d 340 (543)
+.+|...|++..++.. +.-++|-++.+|- +.-.++ | .-.|..|+..++...++.|-.. ....-.+
T Consensus 197 ~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-L-----sGqrllg~pv~vq~sEaeknr~a~~s~a~~ 270 (549)
T KOG0147|consen 197 EEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-L-----SGQRLLGVPVIVQLSEAEKNRAANASPALQ 270 (549)
T ss_pred HHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-h-----cCCcccCceeEecccHHHHHHHHhcccccc
Confidence 5678888998877632 3446776666662 222221 1 1234445555555555543331 1111111
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeE
Q 009126 341 PGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (543)
Q Consensus 341 ~g~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~ 416 (543)
.+....+.+.+||||| .++++|++|+.+|..||.|+.|.++.| +++|||||+|.+.++|++|++.||+.+|-||.
T Consensus 271 ~k~~~~p~~rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ 349 (549)
T KOG0147|consen 271 GKGFTGPMRRLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRL 349 (549)
T ss_pred ccccccchhhhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCce
Confidence 1122222334999999 999999999999999999999999986 79999999999999999999999999999999
Q ss_pred EEEeeccccccc
Q 009126 417 VLVKPYREKSRL 428 (543)
Q Consensus 417 V~Vk~Ak~K~~~ 428 (543)
|+|.....+-..
T Consensus 350 ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 350 IKVSVVTERVDT 361 (549)
T ss_pred EEEEEeeeeccc
Confidence 999987766543
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.34 E-value=7.1e-12 Score=138.56 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEc----CeEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARV 417 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~----Gr~V 417 (543)
....++|||+|| ++++|+++|+++|++||+|.+++|+.+ +++|||||+|.+.++|.+|++.+++..+. |+.+
T Consensus 175 ~~~~~~l~V~nl-~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNL-DPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 345679999999 999999999999999999999999886 67999999999999999999999999999 9999
Q ss_pred EEeeccccccc
Q 009126 418 LVKPYREKSRL 428 (543)
Q Consensus 418 ~Vk~Ak~K~~~ 428 (543)
.|.+++.+.+.
T Consensus 254 ~v~~a~~k~er 264 (562)
T TIGR01628 254 YVGRAQKRAER 264 (562)
T ss_pred EeecccChhhh
Confidence 99999887654
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=5.3e-12 Score=134.51 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCH--HHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFA--ETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~--e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
...+|||||| .+.+|+++|+..|+.||.|.+|.|++...||||||+|... .++.+|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3469999999 9999999999999999999999999877799999999987 789999999999999999999999987
Q ss_pred c
Q 009126 425 K 425 (543)
Q Consensus 425 K 425 (543)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.29 E-value=2.4e-11 Score=130.54 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+..++|||+|| +..+|+++|+++|++||.|..|+|+.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 45789999999 899999999999999999999999975 5789999999999999999999999999999999999
Q ss_pred ccc
Q 009126 422 YRE 424 (543)
Q Consensus 422 Ak~ 424 (543)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 764
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=3.1e-12 Score=132.32 Aligned_cols=166 Identities=16% Similarity=0.293 Sum_probs=119.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
+||||.+ .+.+.|+.||..|..||+|.+|.+-.| +++|||||+|+-+|.|+.|++.||+..++||.|+|.+-..-
T Consensus 115 RvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 115 RVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred heeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7999999 999999999999999999999999887 89999999999999999999999999999999999853222
Q ss_pred cc---chhhHhhhhcCC-CCccCCCCCCCccccccchhhcccHHHHhhHHHHHHHHhhhHhHHHHHhhhhccCCCC-CCC
Q 009126 426 SR---LVDRKYVEKMQH-PMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQLACKPMN-HHS 500 (543)
Q Consensus 426 ~~---~~~~~~~~~~~~-~~~~sp~~~~~d~~l~~~~R~~~n~r~lrrk~~E~~~q~lEl~~r~l~~~q~~~k~~~-~~~ 500 (543)
+. +.+.-..+...+ ..|.. ++..++.+ +.-+-.+|-.+. +..-+|.+-+++ .|.
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVa-----------SvHpDLSe---------~DiKSVFEAFG~-I~~C~LAr~pt~~~Hk 252 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVA-----------SVHPDLSE---------TDIKSVFEAFGE-IVKCQLARAPTGRGHK 252 (544)
T ss_pred cccchHHHHHHHHHHhhheEEee-----------ecCCCccH---------HHHHHHHHhhcc-eeeEEeeccCCCCCcc
Confidence 11 111111110000 00000 01111111 122233333332 444556664444 678
Q ss_pred CCCCCccccccchHHHHhhhcchhe---eeeecccccCCc
Q 009126 501 YFGYSMDELQPLQNKVISRLLSVSI---ICWMFSIMVPPV 537 (543)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 537 (543)
-|||-.+....+|+++|.-|+=|++ ..+++-|+-||-
T Consensus 253 GyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 253 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred ceeeEEeccccchHHHhhhcchhhcccceEecccccCCCc
Confidence 8999999999999999999999999 489999999985
No 21
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.7e-12 Score=126.97 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++||||+| ..++||.-|...|-.||.|.+|.||.| ++||||||+|+..|+|..|+..||...+.||.|+|..|
T Consensus 9 ~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4679999999 778999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
+|..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8864
No 22
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.4e-11 Score=124.98 Aligned_cols=88 Identities=18% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEE
Q 009126 337 EKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (543)
Q Consensus 337 dr~d~g~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (543)
+..|....+.+.+||||+.| +++++|..|++.|+.||+|+.|+|++| +++|||||+|+++-+...|++...+..|
T Consensus 90 P~~dp~a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCcccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 33455666778899999999 999999999999999999999999997 8999999999999999999999999999
Q ss_pred cCeEEEEeecccc
Q 009126 413 CGARVLVKPYREK 425 (543)
Q Consensus 413 ~Gr~V~Vk~Ak~K 425 (543)
+|++|.|..-..+
T Consensus 169 dgrri~VDvERgR 181 (335)
T KOG0113|consen 169 DGRRILVDVERGR 181 (335)
T ss_pred cCcEEEEEecccc
Confidence 9999999876544
No 23
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=1.7e-11 Score=98.42 Aligned_cols=67 Identities=36% Similarity=0.568 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 351 IfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
|||+|| ++++++++|+++|+.||.|.++++..+ +.+|+|||+|.+.++|++|++..+++.++|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 889999999999999999999999985 3589999999999999999999999999999885
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=3.5e-11 Score=93.30 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
+|||++| +..+++++|+++|.+||+|.++++..+ .++|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 889999999999999999999999874 367999999999999999999999999999999874
No 25
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.4e-11 Score=117.16 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~ 426 (543)
...+|||||| ...+++.+|+..|+.||+|..|.|.. ...|||||+|+++.+|+.|+..|++..|||.+|.|+...-+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3679999999 99999999999999999999999977 679999999999999999999999999999999999876554
Q ss_pred c
Q 009126 427 R 427 (543)
Q Consensus 427 ~ 427 (543)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=8.4e-12 Score=125.19 Aligned_cols=79 Identities=15% Similarity=0.298 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.--+|||.| ...++.|+||+.|.+||+|.+++|++| ++||||||.|-+.++|+.||..|||+.|++|.|+-.||.
T Consensus 62 hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 558999999 899999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
.|+.
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 8873
No 27
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.25 E-value=3.2e-11 Score=120.30 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
...+|||+|| ++.+||++|+++|+.||+|++|+|+.| +.+|||||+|.++++|+.|+. |+|..|.++.|.|.++..
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4579999999 999999999999999999999999997 677899999999999999994 699999999999998654
No 28
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.5e-11 Score=118.58 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...+|-|.|| +.+++|++|+++|..||.|.+|.|..| .+||||||+|.+.++|.+||+.|||+-+++-.+.|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4568999999 999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred ccc
Q 009126 423 REK 425 (543)
Q Consensus 423 k~K 425 (543)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 29
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=7.8e-11 Score=112.17 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
..+|||+|| ++++|+++|+++|.+||.|..|+|+.| +++|||||+|.+.++|..|+..+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999 999999999999999999999999886 689999999999999999999999999999999999965
Q ss_pred c
Q 009126 424 E 424 (543)
Q Consensus 424 ~ 424 (543)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.19 E-value=7.1e-11 Score=131.39 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcC--CCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~f--G~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
...++|||+|| ++++||++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34679999999 9999999999999999 999999885 6799999999999999999999999999999999998
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 8654
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.18 E-value=8.4e-11 Score=128.43 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 346 AGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 346 ~~~rtIfVg~L~~~-~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
+...+|||+|| ++ .+|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|..|+..||++.|.|+.|+|.+++.
T Consensus 273 ~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 46789999999 65 7999999999999999999999985 579999999999999999999999999999999999866
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
+.
T Consensus 351 ~~ 352 (481)
T TIGR01649 351 QN 352 (481)
T ss_pred cc
Confidence 53
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=1.1e-10 Score=126.93 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++.+|+++|+++|++||.|..+.|+.+ +++|||||+|.+.++|..|++.||+..|+|+.|.|+++
T Consensus 294 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999 999999999999999999999999875 58999999999999999999999999999999999998
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
....
T Consensus 373 ~~~~ 376 (509)
T TIGR01642 373 CVGA 376 (509)
T ss_pred ccCC
Confidence 6543
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=1.1e-10 Score=89.93 Aligned_cols=67 Identities=28% Similarity=0.406 Sum_probs=61.6
Q ss_pred EcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 353 LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 353 Vg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
|++| ++.+++++|+++|++||+|.++.|..+ +++|+|||+|.+.++|.+|++.+++..++|++|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 889999999999999999999999875 348999999999999999999999999999999874
No 34
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.16 E-value=3.2e-11 Score=125.02 Aligned_cols=81 Identities=32% Similarity=0.460 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++||||+| +.+++|++++++|.+||.|.++.+++| +.||||||+|.+++.+++++.. ..|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 5779999999 999999999999999999999999997 7899999999999999999998 899999999999999
Q ss_pred cccccch
Q 009126 423 REKSRLV 429 (543)
Q Consensus 423 k~K~~~~ 429 (543)
.+|....
T Consensus 174 ~pk~~~~ 180 (311)
T KOG4205|consen 174 IPKEVMQ 180 (311)
T ss_pred cchhhcc
Confidence 9987654
No 35
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.15 E-value=4.9e-11 Score=115.95 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...+|-|-|| .+.++.++|+..|++||.|-+|.|+.| ++||||||.|.+..+|+.|++.|+|..++|+.|.|..|
T Consensus 12 gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3468999999 999999999999999999999999998 78999999999999999999999999999999999877
Q ss_pred cc
Q 009126 423 RE 424 (543)
Q Consensus 423 k~ 424 (543)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 54
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=1.5e-10 Score=126.58 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHh--cCCeEEcCeEEEEeeccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK--GNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~--mng~~i~Gr~V~Vk~Ak~ 424 (543)
++++|||+|| ++++||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++. +++..++|+.|.|.++..
T Consensus 1 ps~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 3689999999 99999999999999999999999997 789999999999999999996 488999999999999875
Q ss_pred c
Q 009126 425 K 425 (543)
Q Consensus 425 K 425 (543)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 4
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.14 E-value=2.3e-10 Score=122.90 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.| +++|||||+|.+.++|.+|+. |++..+.|+.|.|..
T Consensus 87 ~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34679999999 999999999999999999999999986 579999999999999999997 699999999999998
Q ss_pred cccc
Q 009126 422 YREK 425 (543)
Q Consensus 422 Ak~K 425 (543)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7544
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.13 E-value=1.4e-10 Score=129.04 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEc-CeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~-Gr~V~Vk~A 422 (543)
...+|||+|| +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++||+.||+..|. |+.+.|.++
T Consensus 57 ~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4579999999 999999999999999999999999986 78999999999999999999999998885 788888766
Q ss_pred cc
Q 009126 423 RE 424 (543)
Q Consensus 423 k~ 424 (543)
..
T Consensus 136 ~~ 137 (578)
T TIGR01648 136 VD 137 (578)
T ss_pred cc
Confidence 54
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=4.6e-10 Score=87.39 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccC---CCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ---KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~---sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+|||++| ++.+++++|+++|..||+|..+.+..+. .+|+|||+|.+.++|..|+..+++..++|+++.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 8889999999999999999999998853 489999999999999999999999999999999864
No 40
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=2.8e-10 Score=88.33 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 366 VSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 366 Lr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
|.++|++||+|.+|.+..+. +++|||+|.+.++|+.|++.+|+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998743 599999999999999999999999999999999885
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.09 E-value=1e-10 Score=111.88 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...||||||| +..++++.|+++|-+.|+|.+++|++| .++|||||+|.++|+|+-|++.||...+.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3469999999 999999999999999999999999997 58999999999999999999999999999999999998
Q ss_pred c
Q 009126 423 R 423 (543)
Q Consensus 423 k 423 (543)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=8e-10 Score=117.20 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.....+-|||.|| ..++|||.|++.|++||.|++|+.++| ||||.|.+.++|.+|+++||+..|+|..|.|..|+
T Consensus 255 ~ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 255 TMSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4566789999999 889999999999999999999998754 99999999999999999999999999999999999
Q ss_pred ccccchhh
Q 009126 424 EKSRLVDR 431 (543)
Q Consensus 424 ~K~~~~~~ 431 (543)
|..+....
T Consensus 330 P~~k~k~~ 337 (506)
T KOG0117|consen 330 PVDKKKKE 337 (506)
T ss_pred Chhhhccc
Confidence 87654433
No 43
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=6.5e-10 Score=101.29 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
..+.||||||| ++.++||+|.++|++.|+|..|.|=.| ..-||+||.|...++|+.|+.-+++..++.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45679999999 999999999999999999999977666 4579999999999999999999999999999999988
Q ss_pred cc
Q 009126 422 YR 423 (543)
Q Consensus 422 Ak 423 (543)
-.
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 43
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=1.1e-09 Score=118.12 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=76.2
Q ss_pred CCCC-CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 345 VAGS-RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 345 ~~~~-rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.+.. ..||||++ +++++|++|.++|+..|.|.++++++| +.|||||++|.+.+++..|++.+|+..+.||+++|
T Consensus 14 ~~~~~~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 14 SPGLSSSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred CcccccceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 3444 89999999 999999999999999999999999997 78999999999999999999999999999999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
.++.....
T Consensus 93 ~~~~~~~~ 100 (435)
T KOG0108|consen 93 NYASNRKN 100 (435)
T ss_pred ecccccch
Confidence 99876654
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.98 E-value=2.8e-10 Score=118.06 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...+||||+| +|++++|.|++||++||+|.+|.+++| ++|||+||+|++++.+.+++.. ..|.|+||.|.++.|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 4579999999 999999999999999999999999997 8999999999999999999988 789999999999999
Q ss_pred cccccc
Q 009126 423 REKSRL 428 (543)
Q Consensus 423 k~K~~~ 428 (543)
.++...
T Consensus 83 v~r~~~ 88 (311)
T KOG4205|consen 83 VSREDQ 88 (311)
T ss_pred cCcccc
Confidence 987643
No 46
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=2.1e-09 Score=87.64 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=51.2
Q ss_pred HHHHHHHhh----cCCCEEEEE-eecc------CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 363 EQDVSNYFS----KFGPVQDVR-IPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 363 EedLr~~Fs----~fG~V~~Vr-I~~d------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
+++|+++|+ +||.|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..++||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 4442 57999999999999999999999999999999986
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.7e-09 Score=116.90 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
.-+|.|.|| +|.+.+.+|+.+|++||.|.+|.||.. +-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 448999999 999999999999999999999999983 4569999999999999999999999999999999999999
Q ss_pred cccchh
Q 009126 425 KSRLVD 430 (543)
Q Consensus 425 K~~~~~ 430 (543)
|.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 876543
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=3.6e-09 Score=111.93 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeE-EcC--eEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHF-VCG--ARVL 418 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~-i~G--r~V~ 418 (543)
.+.-|+|||-+ +.+++|.||+++|++||.|.+|.|++| .++||+||+|.+.++|.+|+.++++.+ +-| ..|.
T Consensus 32 ~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34559999999 999999999999999999999999998 689999999999999999999985444 433 6788
Q ss_pred Eeeccccc
Q 009126 419 VKPYREKS 426 (543)
Q Consensus 419 Vk~Ak~K~ 426 (543)
|++|....
T Consensus 111 vk~Ad~E~ 118 (510)
T KOG0144|consen 111 VKYADGER 118 (510)
T ss_pred ecccchhh
Confidence 88876543
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=6.4e-09 Score=110.45 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEE-cCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV-CGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i-~Gr~V~Vk 420 (543)
+...-||||.| +.++.|++|.-+|++-|+|-++|+|.| .+||||||+|.+.+.|++|++.+|++.| .|+.|.|+
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 55679999999 999999999999999999999999997 7899999999999999999999999988 68999988
Q ss_pred ecccc
Q 009126 421 PYREK 425 (543)
Q Consensus 421 ~Ak~K 425 (543)
....+
T Consensus 160 ~Svan 164 (506)
T KOG0117|consen 160 VSVAN 164 (506)
T ss_pred Eeeec
Confidence 66543
No 50
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=6.4e-09 Score=91.81 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
..++-|||.|| ++++|.|+..++|++||.|..|||=.. .-||-|||.|++..+|++|++.|+|..++++-+.|-.+++
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34789999999 999999999999999999999999654 6799999999999999999999999999999999998876
Q ss_pred c
Q 009126 425 K 425 (543)
Q Consensus 425 K 425 (543)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 51
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=3.6e-10 Score=108.22 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
..+-.||||+| +++.||.||--.||+||+|++|.+++| +++||||..|++..+--.|+..+||..|.||.|+|..
T Consensus 33 kdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 44569999999 999999999999999999999999997 7999999999999999999999999999999999975
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=2e-08 Score=100.81 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.....|.|--| +..+|+|+||.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+||..+..+.|+|.+
T Consensus 39 ~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44568888889 899999999999999999999999997 7899999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
|+|-..
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 998754
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=2.3e-08 Score=108.32 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhc-----CC-eEEcCeEEE
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-----NP-HFVCGARVL 418 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~m-----ng-~~i~Gr~V~ 418 (543)
++|||.|| ++++||++|.++|++||+|..+.|+.+ +++|.|||.|.+..+++.+|+.. .+ ..++||.|.
T Consensus 293 ~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 293 KTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred ceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 69999999 999999999999999999999999885 79999999999999999999986 34 789999999
Q ss_pred Eeeccccccc
Q 009126 419 VKPYREKSRL 428 (543)
Q Consensus 419 Vk~Ak~K~~~ 428 (543)
|..|..+...
T Consensus 372 v~~Av~RkeA 381 (678)
T KOG0127|consen 372 VTLAVTRKEA 381 (678)
T ss_pred eeeccchHHH
Confidence 9999887653
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.83 E-value=1.1e-08 Score=111.40 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcC------------CCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKF------------GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~f------------G~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (543)
....++|||||| ++.+|+++|+++|.+| +.|..+.+.. .+|||||+|.+.++|..||+ ||+..+
T Consensus 172 ~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345689999999 9999999999999975 4666666655 79999999999999999994 899999
Q ss_pred cCeEEEEeecc
Q 009126 413 CGARVLVKPYR 423 (543)
Q Consensus 413 ~Gr~V~Vk~Ak 423 (543)
.|+.|+|....
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997644
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.82 E-value=4.6e-09 Score=106.69 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
..+.||+|||| .++++..+|+..|.+||+|.+|.|+ |+|+||.|+-.++|..|+..|++..++|++++|.....+
T Consensus 76 k~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCC-CccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 46779999999 9999999999999999999999996 689999999999999999999999999999999887654
Q ss_pred c
Q 009126 426 S 426 (543)
Q Consensus 426 ~ 426 (543)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 3
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=6.7e-09 Score=99.85 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
..++|||||| +.++.|.+|+++|.+||.|.+|.+-.- ....||||.|+++.+|+.|+..-++-.++|.+++|+++..-
T Consensus 5 ~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4579999999 999999999999999999999987442 34679999999999999999999999999999999998654
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=1.3e-08 Score=102.10 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=71.5
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
=.|||-|| ..+.+|..|+.+|+.||.|..|+|++| ++||||||+..+.++|.-|+..+||..+++|.+.|.+...
T Consensus 279 ~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 279 WCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 38999999 889999999999999999999999998 8899999999999999999999999999999999988654
Q ss_pred c
Q 009126 425 K 425 (543)
Q Consensus 425 K 425 (543)
|
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.78 E-value=1e-08 Score=114.58 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~ 426 (543)
-++|||||+| +..++|.||++.|+.||+|++|.++. .||||||+.....+|.+|+.+|+.+.+.++.|+|+|+..++
T Consensus 420 ~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 3789999999 99999999999999999999999988 99999999999999999999999999999999999999887
Q ss_pred cch
Q 009126 427 RLV 429 (543)
Q Consensus 427 ~~~ 429 (543)
-..
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 544
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=9.2e-09 Score=94.60 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
-|||+++ ...+||++|.+.|..||+|..+.+-.| -.+|||.|.|++.+.|++|+..+|+..+-|..|.|.|+--+
T Consensus 74 Ii~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 7999999 889999999999999999999999887 46899999999999999999999999999999999998665
Q ss_pred cc
Q 009126 426 SR 427 (543)
Q Consensus 426 ~~ 427 (543)
+.
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 43
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.74 E-value=1.4e-08 Score=103.29 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=70.2
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~~~ 428 (543)
-+|||||| +..+++.+|+.+|++||+|.+|.|+ |.||||..++...++.|+..|++-.|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 38999999 8899999999999999999999997 579999999999999999999999999999999999888543
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.9e-08 Score=106.97 Aligned_cols=77 Identities=18% Similarity=0.404 Sum_probs=72.7
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccccc
Q 009126 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (543)
Q Consensus 351 IfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~~~ 428 (543)
|||.|| +.++|..+|.++|+.||+|.+|++..| .++|| ||.|+++++|++|++.+||..+.|+.|.|..+..+.++
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 999999999999999999999999996 68999 99999999999999999999999999999998887654
Q ss_pred h
Q 009126 429 V 429 (543)
Q Consensus 429 ~ 429 (543)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 4
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.73 E-value=1.4e-08 Score=97.38 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEE-Eeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~V-rI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....+|||||| ++.++|..|.+.|+.||.+.+. .|++| .++|||||.|.+.|.+.+|+..||++.+++|++.|.
T Consensus 94 ~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 34479999999 8899999999999999998774 45553 789999999999999999999999999999999999
Q ss_pred eccccccch
Q 009126 421 PYREKSRLV 429 (543)
Q Consensus 421 ~Ak~K~~~~ 429 (543)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 998776544
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.66 E-value=5.9e-08 Score=95.74 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHH----HhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 347 GSRQIYLTFPAESTFTEQDVSN----YFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~----~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.+.||||-|| ...+..++|++ +|++||.|.+|....- +.||=|||.|.+.+.|..|+.+|+|..+.|+.++|.+
T Consensus 8 pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3449999999 88899999998 9999999999987653 7899999999999999999999999999999999999
Q ss_pred ccccccchhh
Q 009126 422 YREKSRLVDR 431 (543)
Q Consensus 422 Ak~K~~~~~~ 431 (543)
|+.+.....+
T Consensus 87 A~s~sdii~~ 96 (221)
T KOG4206|consen 87 AKSDSDIIAQ 96 (221)
T ss_pred ccCccchhhc
Confidence 9988766544
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=5.4e-08 Score=98.04 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEE-cC--eEEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV-CG--ARVLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i-~G--r~V~V 419 (543)
...+|||||-| ...-.|||++..|..||+|++|.+.++ .+|||+||.|.+.-+|+.||..+++..- -| .-+.|
T Consensus 17 ~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 36789999999 888999999999999999999999984 7899999999999999999999876543 23 46889
Q ss_pred eeccccccchhhHhh
Q 009126 420 KPYREKSRLVDRKYV 434 (543)
Q Consensus 420 k~Ak~K~~~~~~~~~ 434 (543)
|++...+++..|+.+
T Consensus 96 K~ADTdkER~lRRMQ 110 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQ 110 (371)
T ss_pred EeccchHHHHHHHHH
Confidence 998776665555443
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=3.3e-08 Score=99.55 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.+|...+|||-.| +.++.+.+|-..|-.||.|++.+|..| ++|.||||.|+++.+++.||..|||..|+-+|++|
T Consensus 281 eGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 3466779999999 889999999999999999999999876 79999999999999999999999999999999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
...++|..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99888754
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.1e-08 Score=100.23 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccC----CCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~----sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
...|+.+-|||--| .+.+|++||.-+||.||+|..|.|++|+ +-.||||.|++.+++++|+-+|+++.|+.|+|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45688899999999 8889999999999999999999999984 456999999999999999999999999999999
Q ss_pred Eeeccc
Q 009126 419 VKPYRE 424 (543)
Q Consensus 419 Vk~Ak~ 424 (543)
|.+.+.
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 987654
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.5e-07 Score=100.16 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
....+|||.|+ +..++++.|+++|+.||+|..++|+.+ +++|||||.|.+.++|.+|+..+|+..+.++.+.|.++
T Consensus 268 ~~~~nl~vknl-d~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 268 LQGANLYVKNL-DETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred ccccccccccC-ccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 44669999999 999999999999999999999999985 89999999999999999999999999999999999998
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
+.+..
T Consensus 347 qr~~~ 351 (369)
T KOG0123|consen 347 QRKED 351 (369)
T ss_pred hhhcc
Confidence 85543
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=2.6e-07 Score=96.37 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||..+ ..+.+|+||+..|+.||+|.+|.+.++ .+|||||++|.+......|+..||-..++|.-++|..+
T Consensus 209 ~fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 209 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3569999999 999999999999999999999999885 78999999999999999999999999999999999876
Q ss_pred ccc
Q 009126 423 REK 425 (543)
Q Consensus 423 k~K 425 (543)
...
T Consensus 288 vTP 290 (544)
T KOG0124|consen 288 VTP 290 (544)
T ss_pred cCC
Confidence 543
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.44 E-value=5.2e-07 Score=95.98 Aligned_cols=78 Identities=27% Similarity=0.320 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhh-cCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs-~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...|.+||+|| ++++.=.+|+++|. +-|+|+.|.+..| +.||||.|+|+++|.+++|++.||.+.+.||.|.||-
T Consensus 42 ~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34567999999 99999999999996 6999999999997 8999999999999999999999999999999999986
Q ss_pred ccc
Q 009126 422 YRE 424 (543)
Q Consensus 422 Ak~ 424 (543)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=7.9e-07 Score=99.14 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=68.3
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
+|||.|| .+++|.++|...|.++|.|.++.|... .+.|||||.|.+.++|++|+..|+|+.|+|+.|.|+.+
T Consensus 517 ~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4999999 999999999999999999999999773 24599999999999999999999999999999999998
Q ss_pred c
Q 009126 423 R 423 (543)
Q Consensus 423 k 423 (543)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=97.48 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V 417 (543)
.|.++++||||| +..++|+.|-..|+.||+|..|+|++- +.+-||||.|-+..+|++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 577899999999 889999999999999999999999872 668899999999999999999999999999999
Q ss_pred EEeecccc
Q 009126 418 LVKPYREK 425 (543)
Q Consensus 418 ~Vk~Ak~K 425 (543)
++.|.+.-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998543
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.34 E-value=6.6e-07 Score=97.50 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.++|||.+| ...+...||+++|++||+|+-.+|+.. .-|.|||||..+.++|.++|+.|+.+.+.||.|.|..++
T Consensus 405 gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 579999999 888889999999999999999999985 458899999999999999999999999999999999876
Q ss_pred c
Q 009126 424 E 424 (543)
Q Consensus 424 ~ 424 (543)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.28 E-value=1.8e-06 Score=93.26 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~----d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
..+|||++| +.++++++|+++|.+||+|++.+|.. ++...||||+|.+.+.++.|+.+ +...|+|+++.|+--+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 346999999 99999999999999999999998876 34448999999999999999999 7999999999998766
Q ss_pred cc
Q 009126 424 EK 425 (543)
Q Consensus 424 ~K 425 (543)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 54
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.26 E-value=6.6e-07 Score=99.75 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.++|.|.|| ++..+-.+|+.+|+.||.|.+|+||.. .+||||||+|-++.+|.+|+..+..+.+.||++.+.||+
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 569999999 999999999999999999999999983 579999999999999999999999999999999999998
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7654
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=1.4e-06 Score=86.45 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=67.2
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
.++|||+| ++.+.+.+|.++|..||.|.+|.+ ..|||||.|++..+|..|+-.+|+.+++|.++.|.+++.+
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 37899999 999999999999999999999988 6799999999999999999999999999999888888753
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=8.1e-07 Score=87.63 Aligned_cols=79 Identities=22% Similarity=0.179 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
.+..+||||+|+ ...++|+-|.++|-+-|+|.+|.|+.+ ..--||||.|.++-.+..|++-||+..+.++.+.|++-
T Consensus 6 ae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 355789999999 999999999999999999999999885 23339999999999999999999999999999999875
Q ss_pred cc
Q 009126 423 RE 424 (543)
Q Consensus 423 k~ 424 (543)
.-
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 43
No 77
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.08 E-value=8.7e-06 Score=79.74 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcC-CCEEEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~f-G~V~~VrI~~----d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....-+||+.+ +.-+.|..+..+|.+| |.|..+++-+ +.+||||||.|++++.|+-|-+.||+-.+.|+.+.|.
T Consensus 47 ~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 34557899999 8889999999999998 7888888866 3799999999999999999999999999999999998
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
.-.+...
T Consensus 126 vmppe~~ 132 (214)
T KOG4208|consen 126 VMPPEQK 132 (214)
T ss_pred EeCchhh
Confidence 8766533
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.94 E-value=2.7e-05 Score=78.66 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
....+|+|.|| ++.++++||+++|.+||.++.+-|-+| ++.|.|=|+|...++|..|++.++++-++|+.+++...
T Consensus 81 ~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 44579999999 999999999999999999999999887 67899999999999999999999999999999998766
Q ss_pred ccc
Q 009126 423 REK 425 (543)
Q Consensus 423 k~K 425 (543)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.87 E-value=2.5e-05 Score=83.45 Aligned_cols=73 Identities=22% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+...+|||.|| ++++|=..|++-|..||.|..+.|+.. +++| .|.|.++++|++|+..||+..++||.|+|.+
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34568999999 999999999999999999999999763 6665 9999999999999999999999999999975
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.80 E-value=2.4e-05 Score=78.62 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...+.+|||++ ++.+|-+++..+|+.+|.|..|.|++| +.+||+||.|.+.+.++.||. ||+..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45679999999 999998889999999999999999987 578999999999999999999 899999999999988
Q ss_pred cccc
Q 009126 422 YREK 425 (543)
Q Consensus 422 Ak~K 425 (543)
.+-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6654
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.79 E-value=1.7e-05 Score=79.96 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.-+||-|.| .-+++++.|.+.|.+|-.-...++++| +++|||||.|.+..++..|+.+|||..++.|.|+.....
T Consensus 190 DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 190 DFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 459999999 888999999999999999999999997 899999999999999999999999999999998876543
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=2.3e-05 Score=85.82 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
....++|+|-+| +.++++++|++.|+.||+|.+|+.-. .++|-.||.|-+..+|++|++++|+..|.|++++
T Consensus 72 ~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999 99999999999999999999987744 3799999999999999999999999999999998
No 83
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.63 E-value=0.00017 Score=78.01 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~ 426 (543)
....+-+.-.+..--|-++|..+|.+||+|..|.|-+ +---|.|||.+..+|-.|... .+..|+||.|+|.|..+-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEEEecCCc
Confidence 3344444433222336689999999999999998866 434689999999999888887 8999999999999998855
No 84
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.61 E-value=2.6e-05 Score=85.25 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=113.8
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.+|+|+-.+ .-..++-+|.++|+.+|+|.+|+|+.| +++|.|||.|.+.+.+..|+. +.|+-+.|..|.|...+
T Consensus 179 ~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 569999998 678899999999999999999999997 789999999999999999995 59999999999998865
Q ss_pred ccccchhhHhhhhcCCCCccCCCCCCCccccccchhhcccHHHHhhHHHHHH-HHhhhHhHHHHHhhhhcc-CCCCCCCC
Q 009126 424 EKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEH-EQAIELERRRLSEMQLAC-KPMNHHSY 501 (543)
Q Consensus 424 ~K~~~~~~~~~~~~~~~~~~sp~~~~~d~~l~~~~R~~~n~r~lrrk~~E~~-~q~lEl~~r~l~~~q~~~-k~~~~~~~ 501 (543)
...... .. .++.+...-. .-.+-| .+-.. |...+.|+. +.-+|-+.+ +..-|+.- .++++...
T Consensus 257 aeknr~-------a~----~s~a~~~k~~-~~p~~r-l~vgn-LHfNite~~lr~ifepfg~-Ie~v~l~~d~~tG~skg 321 (549)
T KOG0147|consen 257 AEKNRA-------AN----ASPALQGKGF-TGPMRR-LYVGN-LHFNITEDMLRGIFEPFGK-IENVQLTKDSETGRSKG 321 (549)
T ss_pred HHHHHH-------Hh----cccccccccc-ccchhh-hhhcc-cccCchHHHHhhhccCccc-ceeeeeccccccccccC
Confidence 432221 11 1111110000 000001 11101 111223322 233344443 33333333 44899999
Q ss_pred CCCCccccccchHHHHhhhcchheee--eecccccCCcccc
Q 009126 502 FGYSMDELQPLQNKVISRLLSVSIIC--WMFSIMVPPVRTK 540 (543)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 540 (543)
|||+.--.+...+++.-.|+||-++. -..+.+..=+.++
T Consensus 322 fGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 322 FGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred cceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999777777899999999988752 2244444433333
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.56 E-value=0.00031 Score=69.91 Aligned_cols=87 Identities=13% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec-cC----CCceEEEEECCHHHHHHHHHhcCCeEE---cCeEEE
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-QQ----KRMFGFVTFVFAETVKQILAKGNPHFV---CGARVL 418 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~-d~----sRGFGFVtF~~~e~A~~Al~~mng~~i---~Gr~V~ 418 (543)
..|||||.+| +.++...+|..+|..|---+.+.+-+ ++ .+-+|||+|.+...|.+|+.++||..+ .+..++
T Consensus 33 ~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4689999999 99999999999999987666665533 21 246999999999999999999999999 478899
Q ss_pred EeeccccccchhhHhh
Q 009126 419 VKPYREKSRLVDRKYV 434 (543)
Q Consensus 419 Vk~Ak~K~~~~~~~~~ 434 (543)
+..|+...+...++..
T Consensus 112 iElAKSNtK~kr~k~s 127 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGS 127 (284)
T ss_pred eeehhcCcccccCCCC
Confidence 9999887766555433
No 86
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.54 E-value=1.8e-05 Score=53.73 Aligned_cols=23 Identities=43% Similarity=1.246 Sum_probs=18.4
Q ss_pred ccccccccc-ccCCCCCCCcccCC
Q 009126 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrf~Hg 214 (543)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 579999988 99999999999997
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.41 E-value=0.00055 Score=73.05 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~ 426 (543)
+..|.|.+|..+.+|.+.|-..|+-||.|.+|+|.+.+ +--|.|.|.+...|+-|++.++|+.+.|++|+|...+-..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 67899999988999999999999999999999999854 3689999999999999999999999999999999877543
No 88
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.36 E-value=0.0005 Score=72.05 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE--------EEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeE
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~--------VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~ 416 (543)
+..|||.|| +.++|-+++.++|+++|-|.+ |++-.+ +-+|=|.++|-..+++..|+..|++..+.|+.
T Consensus 134 Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 556999999 999999999999999998864 344433 67899999999999999999999999999999
Q ss_pred EEEeeccc
Q 009126 417 VLVKPYRE 424 (543)
Q Consensus 417 V~Vk~Ak~ 424 (543)
|+|..|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99998763
No 89
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.11 E-value=0.00043 Score=74.16 Aligned_cols=124 Identities=21% Similarity=0.250 Sum_probs=79.9
Q ss_pred cccccccccccCCccHHHHHHHhhhccccccCCCCCccccc--------ccccccccccCCCCCCCCCCCCCCCeEEEcC
Q 009126 284 GYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVIL--------AEDVPKYLEYSGEKSDPGGIVAGSRQIYLTF 355 (543)
Q Consensus 284 ~~~~esqR~~k~G~s~~kll~rlknsi~~ier~~gQ~~vvl--------~ed~~K~~~~r~dr~d~g~~~~~~rtIfVg~ 355 (543)
.++-.--|.-+.||-..++++-+ .++...-|.+.+-+.+| .|+-.|.. .-..-.++....-..++|.+.+
T Consensus 161 ~fLlkhvrrnkeGyVpv~~vaSF-KKvK~LTrd~~~va~ALr~S~kL~vseDgkKVr-RisPlp~~~~eel~srtivaen 238 (484)
T KOG1855|consen 161 AFLLKHVRRNKEGYVPVKLVASF-KKVKALTRDWKLVADALRKSSKLEVSEDGKKVR-RISPLPEFDEEELPSRTIVAEN 238 (484)
T ss_pred HHHHHHHhcCCCCceeeehhhhH-HHHHHHhhhhHHHHHHHhhcceEEEccCCceee-ecCCCCCccccccccceEEEec
Confidence 33344456677899766666666 34444444443332222 22222221 1111122223334689999999
Q ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEeec------c-----------CCCceEEEEECCHHHHHHHHHhcCCe
Q 009126 356 PAESTFTEQDVSNYFSKFGPVQDVRIPC------Q-----------QKRMFGFVTFVFAETVKQILAKGNPH 410 (543)
Q Consensus 356 L~~~~~tEedLr~~Fs~fG~V~~VrI~~------d-----------~sRGFGFVtF~~~e~A~~Al~~mng~ 410 (543)
| +.+-.-+.|.++|+.+|.|..|+|.. + +.+-+|+|+|+..+.|.+|.+.+|.-
T Consensus 239 L-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 239 L-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred C-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 9 66666689999999999999999965 1 13568999999999999999997543
No 90
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.09 E-value=0.00027 Score=46.97 Aligned_cols=22 Identities=32% Similarity=1.234 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCCcccCC
Q 009126 193 KVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 193 kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
.+|.+|..|.|++|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999996
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.01 E-value=0.0021 Score=69.97 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
+...-|-+.+| +|++|++||.+||+-. .|+.+.+++. +..|=|||+|.++|++++|+++ +...+..|-|.|..+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 33456777899 9999999999999999 5888888874 7889999999999999999999 8889999999998876
Q ss_pred ccc
Q 009126 424 EKS 426 (543)
Q Consensus 424 ~K~ 426 (543)
.+.
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 543
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.96 E-value=0.004 Score=54.88 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=64.1
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhc--CCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEc----CeEEE
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVL 418 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~--fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~----Gr~V~ 418 (543)
+||-|.|| |-..|.++|.+++.. .|...-+.+|.| .+.|||||.|.+++.|.+-.+..+|+.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 58999999 888999999988864 567777788877 56999999999999999999999998885 56678
Q ss_pred Eeeccccc
Q 009126 419 VKPYREKS 426 (543)
Q Consensus 419 Vk~Ak~K~ 426 (543)
|.+|+-.+
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 88876544
No 93
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.82 E-value=0.0032 Score=49.29 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHH
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQIL 404 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al 404 (543)
+.|-|.+. +.. ..+.+.++|.+||+|+++.+.. ..-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf-~~~-~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPD-LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cch-HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 56778787 433 3466778999999999999874 5779999999999999985
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.77 E-value=0.00079 Score=69.74 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=72.6
Q ss_pred CCCeEE-EcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 347 GSRQIY-LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 347 ~~rtIf-Vg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++| |+++ +..+++++|+.+|..+|.|..++++.+ ..+|||+|.|........++.. ..+.+.++.+.+..
T Consensus 183 ~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 345677 9999 999999999999999999999999885 6899999999999999999988 89999999999999
Q ss_pred ccccccch
Q 009126 422 YREKSRLV 429 (543)
Q Consensus 422 Ak~K~~~~ 429 (543)
..++++..
T Consensus 261 ~~~~~~~~ 268 (285)
T KOG4210|consen 261 DEPRPKSD 268 (285)
T ss_pred CCCCcccc
Confidence 88876543
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.73 E-value=0.0046 Score=53.33 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=47.4
Q ss_pred CeEEEcCCCCCCCCHHHH----HHHhhcCC-CEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 349 RQIYLTFPAESTFTEQDV----SNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedL----r~~Fs~fG-~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
..|||.|| +.+.+...| +.++.-+| +|.+| ..+-|+|.|.+.+.|.+|.+.|++-.+.|++|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999 766666655 45555654 77776 47899999999999999999999999999999999875
Q ss_pred ccc
Q 009126 424 EKS 426 (543)
Q Consensus 424 ~K~ 426 (543)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.73 E-value=0.00098 Score=66.43 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=60.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...+.|.++ ...+...+|+++|+.||.+..+.+ .++++||.|...+++.+|++.+++..+.|+.|.|..
T Consensus 99 ~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 447778888 677888999999999999966655 589999999999999999999999999999999933
No 97
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.63 E-value=0.0092 Score=52.88 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=52.5
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEE-------------eeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCe
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-------------IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~Vr-------------I~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr 415 (543)
+.|.|-+. +.. ....|-++|++||+|.+.. ++. ...+--|+|+++.+|.+||.+ ||..++|.
T Consensus 7 ~wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGS 81 (100)
T ss_dssp CEEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTC
T ss_pred eEEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCc
Confidence 45666666 333 5677889999999999885 333 677899999999999999999 99999885
Q ss_pred -EEEEeeccc
Q 009126 416 -RVLVKPYRE 424 (543)
Q Consensus 416 -~V~Vk~Ak~ 424 (543)
.+-|++.++
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 566777643
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.56 E-value=0.0052 Score=64.42 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCCHH---HH--HHHhhcCCCEEEEEeeccC-----CCc-e-EEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 347 GSRQIYLTFPAESTFTEQ---DV--SNYFSKFGPVQDVRIPCQQ-----KRM-F-GFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEe---dL--r~~Fs~fG~V~~VrI~~d~-----sRG-F-GFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
..+-+||-+|++...+|+ .| .+||++||.|.+|.|-+.. --+ + .||||...|+|.++|++.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 355799999955556665 33 4899999999999886531 112 3 3999999999999999999999999
Q ss_pred eEEEEeecccc
Q 009126 415 ARVLVKPYREK 425 (543)
Q Consensus 415 r~V~Vk~Ak~K 425 (543)
|.|+..+...|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99998776544
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.48 E-value=0.0036 Score=55.72 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC
Q 009126 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (543)
Q Consensus 351 IfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn 408 (543)
|.|.++ +..++-++|++.|++||+|..|.+.. .---|+|.|.+.+.|+.|++.+.
T Consensus 4 l~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 4 LKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 667777 77788999999999999999998876 44579999999999999999863
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.0044 Score=68.48 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...+|||++| +..+++..+++....||++...+++.| .++||+|..|.+......|++.+||..++++++.|..|
T Consensus 288 ~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4579999999 999999999999999999999988875 68999999999999999999999999999999999998
Q ss_pred cccccc
Q 009126 423 REKSRL 428 (543)
Q Consensus 423 k~K~~~ 428 (543)
......
T Consensus 367 ~~g~~~ 372 (500)
T KOG0120|consen 367 IVGASN 372 (500)
T ss_pred hccchh
Confidence 776543
No 101
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.26 E-value=0.031 Score=58.98 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=68.8
Q ss_pred cCCCCCCCCCCCCCCCeEEEcCCCC---CCCC-------HHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHH
Q 009126 334 YSGEKSDPGGIVAGSRQIYLTFPAE---STFT-------EQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQI 403 (543)
Q Consensus 334 ~r~dr~d~g~~~~~~rtIfVg~L~~---~~~t-------EedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~A 403 (543)
.++++ +-.......++|.+.|+-. ...+ .++|++--++||.|.+|.|--....|.+-|+|.+.+.|..+
T Consensus 252 w~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~c 330 (382)
T KOG1548|consen 252 WRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQC 330 (382)
T ss_pred cCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHH
Confidence 44444 2233445577899988822 1233 34566668899999999664335789999999999999999
Q ss_pred HHhcCCeEEcCeEEEEeeccccc
Q 009126 404 LAKGNPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 404 l~~mng~~i~Gr~V~Vk~Ak~K~ 426 (543)
++.|+|..++||.|.....-.+.
T Consensus 331 iq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 331 IQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHhcCeeecceEEEEEEeCCcc
Confidence 99999999999999988765543
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.25 E-value=0.011 Score=65.46 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCCEEEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 364 QDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 364 edLr~~Fs~fG~V~~VrI~~d-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
|+++.-+++||.|..|.|+.+ -.-|--||+|.+.+++++|.++|+|..++||.|...++-+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 446666899999999999884 34566799999999999999999999999999988887543
No 103
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.21 E-value=0.0025 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=17.0
Q ss_pred cccccccccCCCCCCCcccCC
Q 009126 194 VCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 194 pC~YFarG~Ck~G~sCrf~Hg 214 (543)
||+||.. |++|++|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998877 999999999994
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.19 E-value=0.019 Score=57.35 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEc-CeEEEEeecc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~-Gr~V~Vk~Ak 423 (543)
.+++..+|+.+| +..++.+.+..+|.+|.--.+|+++.. .++.|||+|.+...+..|...+.+-.|- ...+.|..++
T Consensus 143 ~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 567889999999 888999999999999999999998763 4789999999999999999988777665 6777777664
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.10 E-value=0.017 Score=63.22 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE-EEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~-VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
....|=+.+| ++.+||+||.+||+--=.|.+ |-++.| ++-|=|||.|++.+.|+.||.. +...|+.|-|.|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4457888999 999999999999997755555 334444 6778999999999999999999 889999999999876
Q ss_pred c
Q 009126 423 R 423 (543)
Q Consensus 423 k 423 (543)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.033 Score=61.33 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhh-cCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEE----cCe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV----CGA 415 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs-~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i----~Gr 415 (543)
....+|||||+| +--+|.++|..+|. -||-|.-|-|=.| -.+|-|=|||.+..+--+||++ .-..| -.+
T Consensus 367 lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~~K 444 (520)
T KOG0129|consen 367 IDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDIDK 444 (520)
T ss_pred cCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEeccccce
Confidence 345789999999 88899999999999 7999999998776 4699999999999999999997 22333 246
Q ss_pred EEEEeecc-ccc
Q 009126 416 RVLVKPYR-EKS 426 (543)
Q Consensus 416 ~V~Vk~Ak-~K~ 426 (543)
+|.|+++. +..
T Consensus 445 RVEIkPYv~eDq 456 (520)
T KOG0129|consen 445 RVEIKPYVMEDQ 456 (520)
T ss_pred eeeecceecccc
Confidence 89999987 443
No 107
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.78 E-value=0.011 Score=62.32 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEE--------Eeecc----CCCceEEEEECCHHHHHHHHHhcCCeEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV--------RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~V--------rI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (543)
.....+|||-++ +..+++++|.++|.+.|.|..= .|-+| +.||=|-|+|+++..|+.|+.-.++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 455679999999 8889999999999999988642 22223 6799999999999999999999999999
Q ss_pred cCeEEEEeecccccc
Q 009126 413 CGARVLVKPYREKSR 427 (543)
Q Consensus 413 ~Gr~V~Vk~Ak~K~~ 427 (543)
+|..|+|..|..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999988774
No 108
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.78 E-value=0.0037 Score=66.83 Aligned_cols=26 Identities=42% Similarity=1.080 Sum_probs=24.2
Q ss_pred cccccccccccCCCCCCCcccCCCCC
Q 009126 192 VKVCHYFNKGFCKHGNNCRYFHGHPM 217 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrf~Hg~~~ 217 (543)
.|||.||-.|.|+-|.+|||.||..+
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccchHhhccccccCcccccccCccc
Confidence 89999999999999999999999544
No 109
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.63 E-value=0.012 Score=58.84 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (543)
....||||.|| ..++||++|+..|+.|--...++|-.....-.|||.|++.+.|..|+..+.|..|
T Consensus 208 ~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 44669999999 9999999999999999877777775422334789999888888888887766555
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.029 Score=61.76 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=54.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-------CCCc---eEEEEECCHHHHHHHHHhcCCeEEcCeE
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRM---FGFVTFVFAETVKQILAKGNPHFVCGAR 416 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-------~sRG---FGFVtF~~~e~A~~Al~~mng~~i~Gr~ 416 (543)
-+++||||+| +++++|+.|...|..||.+. |..+.. ..+| |.|..|+++..++.-+.+- ..+...
T Consensus 258 ~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~ 332 (520)
T KOG0129|consen 258 YSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGN 332 (520)
T ss_pred cccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccc
Confidence 4789999999 99999999999999999874 444421 3567 9999999999999877763 224444
Q ss_pred EEEeec
Q 009126 417 VLVKPY 422 (543)
Q Consensus 417 V~Vk~A 422 (543)
..++..
T Consensus 333 ~yf~vs 338 (520)
T KOG0129|consen 333 YYFKVS 338 (520)
T ss_pred eEEEEe
Confidence 444443
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.53 E-value=0.052 Score=57.87 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
+...-+.|-+|.....+-+.|-++|..||+|++|+.++ .+.|-|.|+..+..++++|+..||+..+.|.+|.|+..+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 34557889999556788899999999999999999987 46789999999999999999999999999999999987654
No 112
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.42 E-value=0.016 Score=47.47 Aligned_cols=51 Identities=33% Similarity=0.533 Sum_probs=38.8
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 009126 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (543)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l 61 (543)
.-+|.+|++++|+.|.||-|+||=- +-.|++.| +..+.+|.+-|.+|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLEm--d~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLEM--DNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeCC--CHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 4589999999999999999999854 55677776 455666677777765433
No 113
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.39 E-value=0.0095 Score=49.79 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=40.3
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHH
Q 009126 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60 (543)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~ 60 (543)
..+|.+|++++|++|.||-|+||= .+..|++.|=-.| .+|+.-|.+|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe--~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLE--MDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--SCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhc--CCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 468999999999999999999985 5667788886554 6777888877643
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.15 E-value=0.069 Score=50.43 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCCCCCCeEEEcCCCC------CCCCH---HHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE
Q 009126 342 GGIVAGSRQIYLTFPAE------STFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (543)
Q Consensus 342 g~~~~~~rtIfVg~L~~------~~~tE---edLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (543)
+..+|+..||.|.-. . ..+++ .+|-..|.+||+|.=||++- +-=+|||.+-+.|-+|++. +|..+
T Consensus 21 ~~~GPpDaTVvVsv~-~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 21 SSQGPPDATVVVSVD-SPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp -----TT-EEEEEEC-S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEE
T ss_pred HhcCCCCceEEEEec-CCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEE
Confidence 456788889988777 3 23444 25667899999999998874 4579999999999999998 99999
Q ss_pred cCeEEEEeeccc
Q 009126 413 CGARVLVKPYRE 424 (543)
Q Consensus 413 ~Gr~V~Vk~Ak~ 424 (543)
+|+.+.|+.-.+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999987554
No 115
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.92 E-value=0.026 Score=59.65 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=61.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCC--CEEEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG--~V~~VrI~~----d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.+||||| -|.+|++||-+....-| .+.+++... +++||||.|...+...+++.++.+....|.|..-.|-.+.
T Consensus 82 ~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 7999999 99999999998887766 334444433 3899999999999999999999999999999877776654
Q ss_pred c
Q 009126 424 E 424 (543)
Q Consensus 424 ~ 424 (543)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 116
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.68 E-value=0.04 Score=61.27 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=57.5
Q ss_pred CeEEEcCCCCCCCCHH-------HHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcC-eEE
Q 009126 349 RQIYLTFPAESTFTEQ-------DVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCG-ARV 417 (543)
Q Consensus 349 rtIfVg~L~~~~~tEe-------dLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-r~V 417 (543)
..|+|.|+ +.+-+. -|.+.|+++|+|+...+|.+ ..+||.|+.|.+..+|+.|++.+||+.++- .+.
T Consensus 59 ~vVvv~g~--PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGA--PVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCC--cccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 46777777 233333 36678999999999999975 789999999999999999999999999864 556
Q ss_pred EEeecc
Q 009126 418 LVKPYR 423 (543)
Q Consensus 418 ~Vk~Ak 423 (543)
.|...+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 665443
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.52 E-value=0.022 Score=58.04 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec-c--------CCCc-------eEEEEECCHHHHHHHHHhcCCeE
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-Q--------QKRM-------FGFVTFVFAETVKQILAKGNPHF 411 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~-d--------~sRG-------FGFVtF~~~e~A~~Al~~mng~~ 411 (543)
..-||+++| ++.++...|+++|++||.|-.|.+.. + +.+| =|+|.|.+-..|+++...||+..
T Consensus 74 ~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 357999999 88899999999999999999998865 2 1111 28899999999999999999999
Q ss_pred EcCeE
Q 009126 412 VCGAR 416 (543)
Q Consensus 412 i~Gr~ 416 (543)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99984
No 118
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.29 E-value=0.098 Score=56.42 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCe-EEEEeecc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr-~V~Vk~Ak 423 (543)
.|++.+|.+.++ +.+++||+|++.|.+-|-..+...-..+.|-++.+.+.+.|+|-.|+-.++.|.+++. -++|.+.+
T Consensus 411 ~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 366779999999 8899999999999999988887776666778999999999999999999999999876 78888765
No 119
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.98 E-value=0.024 Score=57.60 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=49.8
Q ss_pred HHHHHHhh-cCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 364 QDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 364 edLr~~Fs-~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
++|-..|+ +||+|+++.|-.. .-+|=.+|.|..+++|++|++.+|+..+.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555556 9999999976542 55888999999999999999999999999999998764
No 120
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.85 E-value=0.031 Score=58.38 Aligned_cols=28 Identities=46% Similarity=1.209 Sum_probs=25.5
Q ss_pred CCCCccccccccc-ccCCCCCCCcccCCC
Q 009126 188 PEFPVKVCHYFNK-GFCKHGNNCRYFHGH 215 (543)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~G~sCrf~Hg~ 215 (543)
....-++|.+|.+ |+||.|..|+|.|+.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4667899999999 999999999999993
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.79 E-value=0.27 Score=51.23 Aligned_cols=63 Identities=22% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHHHHHhhcCCCEEEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 363 EQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 363 EedLr~~Fs~fG~V~~VrI~~d-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
|+++++--++||.|..|.|..+ .-----||.|...+.|-+|+-.|||.+|+||.|...++...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 5677888899999999977553 11223799999999999999999999999999998887543
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.93 E-value=0.12 Score=58.80 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE-EEeec---cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~-VrI~~---d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+....|||..| +..+++.++-++|..--.|++ |.|.+ ++-++-|||.|..++++..|+..-..+.++.|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45679999999 889999999999998888888 65544 58899999999999988888888788999999999987
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
..++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 665543
No 123
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.14 E-value=0.34 Score=50.13 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=29.1
Q ss_pred CCCCeEEEcCCCC-C----------CCCHHHHHHHhhcCCCEEEEEeec
Q 009126 346 AGSRQIYLTFPAE-S----------TFTEQDVSNYFSKFGPVQDVRIPC 383 (543)
Q Consensus 346 ~~~rtIfVg~L~~-~----------~~tEedLr~~Fs~fG~V~~VrI~~ 383 (543)
....|||+.+||- | --+|+.|+..|..||.|..|.||.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3355888888732 1 146788999999999999999975
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.03 E-value=1.4 Score=35.95 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=43.9
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcC---CCEEEEEeeccCCCceEEEEECCHHHHHHHHHhc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKF---GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~f---G~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~m 407 (543)
..+|+|.|+ .+++.++++.||..| .....|..+-|. -+=|.|.+.+.|.+||..|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 358999999 568999999999999 234477777653 3678999999999999764
No 125
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.93 E-value=0.69 Score=48.44 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=59.4
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCe-EEEEeecccccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYREKSR 427 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr-~V~Vk~Ak~K~~ 427 (543)
..|-|-+.++- .-..|-..|++||+|++..... ...|=.|.|.+.-+|++||.. |+.+|+|. .|-|++...|..
T Consensus 198 ~WVTVfGFppg--~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 198 TWVTVFGFPPG--QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred ceEEEeccCcc--chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHH
Confidence 35555555233 4467889999999999987663 667999999999999999999 99999885 577888777754
Q ss_pred ch
Q 009126 428 LV 429 (543)
Q Consensus 428 ~~ 429 (543)
+.
T Consensus 273 i~ 274 (350)
T KOG4285|consen 273 IN 274 (350)
T ss_pred hc
Confidence 43
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.91 E-value=0.48 Score=55.53 Aligned_cols=83 Identities=8% Similarity=0.095 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcC--eEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--r~V~Vk~A 422 (543)
...++.++||+| .....-..|...|..||.|..|.+-. .--|++|.|++...++.|+..|.+.-|+| +++.|.++
T Consensus 452 st~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCC-CCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 345789999999 66678899999999999999977644 55699999999999999999999988876 78999998
Q ss_pred cccccchh
Q 009126 423 REKSRLVD 430 (543)
Q Consensus 423 k~K~~~~~ 430 (543)
.+-....+
T Consensus 529 ~~~~~~Pq 536 (975)
T KOG0112|consen 529 SPPGATPQ 536 (975)
T ss_pred cCCCCChh
Confidence 87665443
No 127
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.40 E-value=1.1 Score=44.03 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=48.0
Q ss_pred CHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CeEEcCeEEEEeeccccc
Q 009126 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPYREKS 426 (543)
Q Consensus 362 tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~Gr~V~Vk~Ak~K~ 426 (543)
..+.|+++|..|+++....+.. +-+=..|.|.+.++|.+|...++ +..+.|..++|.++..-.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4588999999999999988876 55568999999999999999998 899999999999885543
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.05 E-value=0.15 Score=53.85 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=60.8
Q ss_pred CeEEEcCCCCCCCCHHHHH--HHhhcCCCEEEEEeeccC----C---CceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 349 RQIYLTFPAESTFTEQDVS--NYFSKFGPVQDVRIPCQQ----K---RMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr--~~Fs~fG~V~~VrI~~d~----s---RGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
+.+||-+|+..-.+|..|+ ++|++||.|.+|.+-.+. + --=++|||...++|..||...++...+|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4678888844455666665 689999999999887642 1 112799999999999999999999999998777
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
.....+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 6666554
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=88.86 E-value=1.1 Score=51.34 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=61.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEE-EEEeec-c--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPC-Q--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~-~VrI~~-d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.+-|-+-|. +++++-+||-+||+-|-.+- +|++-+ | ..-|=+-|.|++.++|.+|...++++.|.+|.|++..
T Consensus 867 p~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 457778888 99999999999999998766 444444 2 5678899999999999999999999999999998753
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.85 E-value=0.097 Score=60.98 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.-.++|||+|+| +.++++.+|+..|..+|.|.+|.|-.- +---||||.|.+...+-.|+.++.+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345789999999 999999999999999999999988442 3345999999999999999999888888776777766
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
..++.
T Consensus 448 G~~ks 452 (975)
T KOG0112|consen 448 GQPKS 452 (975)
T ss_pred ccccc
Confidence 65543
No 131
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=0.16 Score=54.25 Aligned_cols=24 Identities=46% Similarity=1.131 Sum_probs=22.5
Q ss_pred ccccccccccCCCCCCCcccCCCC
Q 009126 193 KVCHYFNKGFCKHGNNCRYFHGHP 216 (543)
Q Consensus 193 kpC~YFarG~Ck~G~sCrf~Hg~~ 216 (543)
.+|+||.+|+|+.|.-|||.|-.+
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 799999999999999999999854
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=88.19 E-value=3.2 Score=44.81 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCeEEEcCCC-CCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcC--eEEEEeeccc
Q 009126 348 SRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYRE 424 (543)
Q Consensus 348 ~rtIfVg~L~-~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--r~V~Vk~Ak~ 424 (543)
++-|.++-|. -+.+|-+-|..+-...|+|.+|.|.+ +..--|.|+|++.+.|++|.+.|||..|.. -.++|.+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3344444442 47899999999999999999999887 233358999999999999999999999854 4678888887
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
..
T Consensus 199 ~r 200 (494)
T KOG1456|consen 199 TR 200 (494)
T ss_pred ce
Confidence 53
No 133
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=87.75 E-value=0.34 Score=53.98 Aligned_cols=35 Identities=37% Similarity=0.863 Sum_probs=30.5
Q ss_pred cCCCCCCCCCCCcccccccccccCCCCCCCcccCC
Q 009126 180 TSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 180 ~~~~s~~~~~~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
.-||.+.-.--..-||-=|.||.|++|.+|.|.||
T Consensus 224 ARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 224 ARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cccCCcccccccCccCcccccCCCCCCCccccccc
Confidence 45777766666788999999999999999999999
No 134
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.37 E-value=0.5 Score=51.37 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCe-EEcCeEEEEeecc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH-FVCGARVLVKPYR 423 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~-~i~Gr~V~Vk~Ak 423 (543)
+++|+||| .+.++..||+..|..- +++.. -+-||+||.+.+..-|.+|++.+++. .+.|+++.|....
T Consensus 2 nklyignL-~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 47999999 9999999999999754 22221 16899999999999999999998764 5789999999888
Q ss_pred ccccch
Q 009126 424 EKSRLV 429 (543)
Q Consensus 424 ~K~~~~ 429 (543)
+|..+.
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 776443
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.20 E-value=0.074 Score=61.59 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=59.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~----d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
++||.+| +..+.+++|+..|+.+|.|..++|.. ++-||.|+|.|..++.+.+|+.....+.++...+-|.-
T Consensus 669 ~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 669 KIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 8999999 88999999999999999999988762 47899999999999999999998666666544444443
No 136
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=86.97 E-value=0.99 Score=48.74 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec--c-----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC--Q-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~--d-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.-|-|.|| .+.+|.++++.+|+-.|+|.+++++. | -..-.+||.|.+...+..|-.--|.++| ++-+.|-+
T Consensus 8 ~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv-draliv~p 85 (479)
T KOG4676|consen 8 GVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV-DRALIVRP 85 (479)
T ss_pred ceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee-eeeEEEEe
Confidence 37899999 89999999999999999999999865 2 2344899999999988876555454554 66666766
Q ss_pred cccc
Q 009126 422 YREK 425 (543)
Q Consensus 422 Ak~K 425 (543)
|-..
T Consensus 86 ~~~~ 89 (479)
T KOG4676|consen 86 YGDE 89 (479)
T ss_pred cCCC
Confidence 6543
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.86 E-value=0.3 Score=56.81 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec---cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~---d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
...+||.|+ ++..|.+.|+.+++++|++.+++++. ++.+|.+||.|.++.++.+++..+....+.-+.+.|....+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999 99999999999999999999999877 37899999999999999999999888777777777765443
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.26 E-value=0.72 Score=47.28 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcC----CeEEcCeEEEEee
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGN----PHFVCGARVLVKP 421 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mn----g~~i~Gr~V~Vk~ 421 (543)
.-|||.|| ..-++.+.+...|+.||+|+...+.-| +.-+=|+|.|...-.+.+|+...+ +-..+++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 68999999 888999999999999999998766654 566789999999999999988753 3345777888876
Q ss_pred ccc
Q 009126 422 YRE 424 (543)
Q Consensus 422 Ak~ 424 (543)
...
T Consensus 111 ~eq 113 (275)
T KOG0115|consen 111 MEQ 113 (275)
T ss_pred hhc
Confidence 543
No 139
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=84.96 E-value=4.3 Score=40.15 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE--cCeEEEEeec
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV--CGARVLVKPY 422 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i--~Gr~V~Vk~A 422 (543)
-.+.|.+| +.+-+=.||+++.-+-|.|....+.+ -|.|.|.|...|+.+-|+.++..+.+ .|-...+...
T Consensus 116 ~RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 116 YRVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred eeEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 38999999 78888999999999999999888865 67999999999999999999876665 4555555443
No 140
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=84.73 E-value=1.2 Score=50.21 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhh-cCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE---cCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs-~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i---~Gr~V~V 419 (543)
.++.++-|||.|| ---||.-.|+.+.. ..|.|++..| |+-+--+||+|.+.++|.+...+|+++.+ +++.|.|
T Consensus 440 R~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4456789999999 88899999999999 5777777733 44566699999999999999999999988 6777777
Q ss_pred eeccc
Q 009126 420 KPYRE 424 (543)
Q Consensus 420 k~Ak~ 424 (543)
.+...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 77654
No 141
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=84.17 E-value=4.4 Score=38.59 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCCCCeEEEcCCCCCCC-CHHHHHH---HhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTF-TEQDVSN---YFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~-tEedLr~---~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.|+-.||.|.-| ..++ ..+|++. ..+.||+|.+|... .|--|.|+|.+..+|=+|+.+... ..-|..+.+.
T Consensus 83 epPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 356679999887 4332 3455554 46889999999775 577899999999999999998644 5667778877
Q ss_pred ecc
Q 009126 421 PYR 423 (543)
Q Consensus 421 ~Ak 423 (543)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 142
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=84.15 E-value=0.53 Score=31.20 Aligned_cols=19 Identities=32% Similarity=0.952 Sum_probs=17.2
Q ss_pred cccccccc-cCCCCCCCcccC
Q 009126 194 VCHYFNKG-FCKHGNNCRYFH 213 (543)
Q Consensus 194 pC~YFarG-~Ck~G~sCrf~H 213 (543)
.|.|..+| .|+. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999998 9987 8999988
No 143
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=84.03 E-value=1.4 Score=35.69 Aligned_cols=68 Identities=32% Similarity=0.556 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHhhcCCC--CccccccchhHHHhhccccccccccccccccccCCc-cHHHHHHHhhhccccccCCCCC
Q 009126 243 SLERLEAEITELLKQRRGF--PISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY-SLTKLLARLKNSIRLIDRPHGQ 319 (543)
Q Consensus 243 sle~le~e~~ell~~r~g~--p~~~~slp~~Yf~~yg~~Lq~~~~~~esqR~~k~G~-s~~kll~rlknsi~~ier~~gQ 319 (543)
+++.+..+|.+++.+..+. .+....++..|...| ..+..+ .-|| ++..++..+++.+.+.++.+|+
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~~----------~yG~~~l~~ll~~~~~~~~i~~~~~g~ 70 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDPR----------DYGFSSLSELLESLPDVVEIEERQHGG 70 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--TC----------CTTSSSHHHHHHT-TTTEEEEEEECCC
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCcc----------ccCCCcHHHHHHhCCCeEEEeeeCCCC
Confidence 4677888999999666543 788888998888888 666543 3477 7999997788888887887776
Q ss_pred cc
Q 009126 320 HS 321 (543)
Q Consensus 320 ~~ 321 (543)
+.
T Consensus 71 ~~ 72 (74)
T PF12872_consen 71 QV 72 (74)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 144
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=83.31 E-value=1.7 Score=46.86 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=53.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhc----CCCEEEEEeec---cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSK----FGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~----fG~V~~VrI~~---d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
-|-..+| +++.++.++.+||.. -|-++.|-.+. ++.-|=|||.|..+++|++||.+ +...|+-|-|.+.+.
T Consensus 163 ivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 3445789 999999999999963 22334443333 37789999999999999999998 777776666665443
No 145
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.46 E-value=1.6 Score=49.90 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=77.4
Q ss_pred cccCCCCCcccccccccccccccCCCCCCCCCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEE
Q 009126 312 LIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGF 391 (543)
Q Consensus 312 ~ier~~gQ~~vvl~ed~~K~~~~r~dr~d~g~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGF 391 (543)
+...|.-+...|++..++ |. .+-..+....+...++|||++ ...+..+-++.+....|-|..+.... |||
T Consensus 8 ~a~~P~~~~~~~~~~~~p-~~---~p~qp~~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf 77 (668)
T KOG2253|consen 8 AAGMPMMPQVPMVGNGVP-YV---VPIQPVFQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGF 77 (668)
T ss_pred CCCCCCCCCCccccCCcc-cc---cCCcccccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcc
Confidence 334455555556666655 22 222333455567789999999 88888888999999999998887654 999
Q ss_pred EEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 392 VTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 392 VtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..|.......+|+..+....++|..+.++.-
T Consensus 78 ~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 78 CEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred cchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 9999999999999999889999998888774
No 146
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=80.12 E-value=2.1 Score=46.34 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE---EEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQD---VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~---VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...|-+.+| ++..+-|||-+||..|-.-.+ |.|+.. +.-|=|||.|.+.|.|..|.....++...+|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 558899999 999999999999998874332 566663 6779999999999999999998777777899999987
Q ss_pred cc
Q 009126 422 YR 423 (543)
Q Consensus 422 Ak 423 (543)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 147
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=78.96 E-value=0.77 Score=47.89 Aligned_cols=23 Identities=35% Similarity=1.067 Sum_probs=21.2
Q ss_pred ccccccccccCCCCCCCcccCCC
Q 009126 193 KVCHYFNKGFCKHGNNCRYFHGH 215 (543)
Q Consensus 193 kpC~YFarG~Ck~G~sCrf~Hg~ 215 (543)
-.|-||-.|.|..|..|+|.|+.
T Consensus 93 vvCafFk~g~C~KG~kCKFsHdl 115 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHDL 115 (343)
T ss_pred HHHHHHhccCCCCCCcccccchH
Confidence 46999999999999999999983
No 148
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=77.98 E-value=0.78 Score=48.41 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=21.2
Q ss_pred cccccccccccCCCCCC-CcccCC
Q 009126 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~s-Crf~Hg 214 (543)
.-+|.=|.||.|+||.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 46899999999999999 999996
No 149
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=76.59 E-value=1.3 Score=47.17 Aligned_cols=23 Identities=39% Similarity=1.208 Sum_probs=12.2
Q ss_pred ccccccccc-ccCCCCCCCcccCC
Q 009126 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrf~Hg 214 (543)
.++|.||+. |.|.+|..|.|.|+
T Consensus 105 ~rec~ff~~~g~c~~~~~c~y~h~ 128 (325)
T KOG1040|consen 105 MRECKFFSLFGECTNGKDCPYLHG 128 (325)
T ss_pred cccccccccccccccccCCcccCC
Confidence 345555544 55555555555555
No 150
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=74.26 E-value=1.5 Score=45.82 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=22.1
Q ss_pred ccccccc-ccccCCCCCCCcccCCC
Q 009126 192 VKVCHYF-NKGFCKHGNNCRYFHGH 215 (543)
Q Consensus 192 ~kpC~YF-arG~Ck~G~sCrf~Hg~ 215 (543)
.-||.|| .+|.|+.|++|.|.|..
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 5689999 88999999999999995
No 151
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=74.22 E-value=13 Score=32.30 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn 408 (543)
.+-.||+++ ......||.++|+.||.|.=--| .-.-|||...+.+.|..|+..+.
T Consensus 9 dHVFhltFP--keWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE----TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhc
Confidence 457788876 55678999999999999854444 45679999999999999888764
No 152
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=72.56 E-value=1.5 Score=44.15 Aligned_cols=22 Identities=36% Similarity=1.118 Sum_probs=19.3
Q ss_pred cccccc-ccccCCCCCCCcccCC
Q 009126 193 KVCHYF-NKGFCKHGNNCRYFHG 214 (543)
Q Consensus 193 kpC~YF-arG~Ck~G~sCrf~Hg 214 (543)
--|.|+ +.|.|.+|..|||+|.
T Consensus 207 vycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eEEEEecCCCcccCCceeeeecc
Confidence 458887 5699999999999998
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=70.64 E-value=2.4 Score=44.19 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~----d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...+.|+|++ .+.+.+.+...+|.++|.+..+.+.. +.++|++.|.|...+.+..+++..-...+.++.+.....
T Consensus 87 ~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4679999999 88888888999999999988887765 278999999999999999999985555666766665554
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 4443
No 154
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=69.77 E-value=15 Score=30.26 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHhhcCCCEE-----EEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 359 STFTEQDVSNYFSKFGPVQ-----DVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 359 ~~~tEedLr~~Fs~fG~V~-----~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++..+|-.++..-+.|. +|+| ...|.||.-... .|+.+++.+++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678889999998775544 5566 466999998874 688899999999999999999875
No 155
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=67.74 E-value=2.3 Score=45.30 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCCCCCCcccCC
Q 009126 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
..+-..|+||.+|.|+.|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 45688999999999999999999995
No 156
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=64.05 E-value=3.2 Score=43.39 Aligned_cols=27 Identities=41% Similarity=1.024 Sum_probs=23.7
Q ss_pred CCCCccccccccc-ccCCC-CCCCcccCC
Q 009126 188 PEFPVKVCHYFNK-GFCKH-GNNCRYFHG 214 (543)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~-G~sCrf~Hg 214 (543)
..+.-..|.+|.+ |.|+. |.+|+|.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 4567789999987 99999 999999888
No 157
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=52.71 E-value=14 Score=35.91 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhc-CCCE---EEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSK-FGPV---QDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~-fG~V---~~VrI~~d------~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
..+|.|.+| ++.+||+++++..+. +|.. ..+.-..+ ..-.-|+|.|.+.+++..-....+|+.+-+
T Consensus 7 ~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 359999999 999999999997776 6666 23321111 122349999999999999999999987743
No 158
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=51.30 E-value=11 Score=44.47 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE--cCeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV--CGARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i--~Gr~V~Vk~A 422 (543)
-|...+.++.+. .-..+..-|...|++||.|.+++..+ .-..|.|.|...+.|-.|++++.|..+ .|-..+|..|
T Consensus 295 ~plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 295 FPLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred ccCcchhhhhcc-cccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 344556677776 55678889999999999999999877 344699999999999999999877664 6788888887
Q ss_pred ccc
Q 009126 423 REK 425 (543)
Q Consensus 423 k~K 425 (543)
+.-
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 754
No 159
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=51.29 E-value=6 Score=39.40 Aligned_cols=24 Identities=29% Similarity=1.031 Sum_probs=19.5
Q ss_pred Cccccccc-ccccCCCCCCCcccCC
Q 009126 191 PVKVCHYF-NKGFCKHGNNCRYFHG 214 (543)
Q Consensus 191 ~~kpC~YF-arG~Ck~G~sCrf~Hg 214 (543)
-.-.|+=| ..|||--|.+|+|+|-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 34567765 4599999999999997
No 160
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=49.74 E-value=84 Score=28.42 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=49.3
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG-~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
..+-+..+ ++.++-++|..+.+.+- .|..++|++| .+|=.+.++|.+.+.|+.=....||..++.
T Consensus 14 ~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34445555 77777788876666654 5668899887 456678999999999999999999888754
No 161
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=49.54 E-value=7.8 Score=41.15 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=23.4
Q ss_pred CCCCCcccccccccccCCCCCCCcccCC
Q 009126 187 LPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 187 ~~~~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
++....--|+=|.+|.|.| .+|||+|.
T Consensus 66 V~~g~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 66 VSNGRVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred ccCCeEEEEeccccCccCc-ccceecCC
Confidence 4566788899999999999 55999998
No 162
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=49.50 E-value=8.4 Score=40.37 Aligned_cols=25 Identities=36% Similarity=0.992 Sum_probs=22.8
Q ss_pred CcccccccccccCCCCCCCcccCCC
Q 009126 191 PVKVCHYFNKGFCKHGNNCRYFHGH 215 (543)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrf~Hg~ 215 (543)
.--+|++|-+|-|+.|..|.|+|+.
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~~ 127 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHEY 127 (285)
T ss_pred CCcccchhccccCcCCCccccccCC
Confidence 4569999999999999999999993
No 163
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=47.89 E-value=7 Score=39.51 Aligned_cols=23 Identities=48% Similarity=1.096 Sum_probs=20.0
Q ss_pred cccccccccccCCCCCCCcccCCC
Q 009126 192 VKVCHYFNKGFCKHGNNCRYFHGH 215 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrf~Hg~ 215 (543)
-.-|.||--|.|.| -+|||+|-+
T Consensus 261 ipacryfllgkcnn-pncryvhih 283 (377)
T KOG1492|consen 261 IPACRYFLLGKCNN-PNCRYVHIH 283 (377)
T ss_pred cchhhhhhhccCCC-CCceEEEEe
Confidence 44699999999998 899999974
No 164
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=44.70 E-value=29 Score=39.45 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=48.7
Q ss_pred CCeEE-EcCCCCCCCCHHHHHHHhhc--CCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhc--CCeEEcCeEEE
Q 009126 348 SRQIY-LTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG--NPHFVCGARVL 418 (543)
Q Consensus 348 ~rtIf-Vg~L~~~~~tEedLr~~Fs~--fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~m--ng~~i~Gr~V~ 418 (543)
.|+|. +.-| +.++-+|+|+.+|.- +-++.+|..-. .- -.||||++..+|+.|++.+ .-..|.|+.|.
T Consensus 174 kRcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34554 4566 888899999999974 67888887765 22 3799999999999998865 23445565543
No 165
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=41.77 E-value=13 Score=39.23 Aligned_cols=26 Identities=35% Similarity=0.897 Sum_probs=23.8
Q ss_pred CCCccccccccc-ccCCCCCCCcccCC
Q 009126 189 EFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (543)
Q Consensus 189 ~~~~kpC~YFar-G~Ck~G~sCrf~Hg 214 (543)
.|.-+||.-+.+ |||.-|.-|.|.||
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred ccccCCccchhhcccCccccccccccC
Confidence 566799999887 99999999999999
No 166
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=40.51 E-value=5.5 Score=40.34 Aligned_cols=63 Identities=30% Similarity=0.374 Sum_probs=51.5
Q ss_pred CCeEEEcC----CCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeE
Q 009126 348 SRQIYLTF----PAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF 411 (543)
Q Consensus 348 ~rtIfVg~----L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~ 411 (543)
..|++-|+ | +..++++.+.+.|++-|+|+.+++..+ +.|.|+||++.....+-.++..-.+..
T Consensus 80 q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 80 QRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 34666666 6 778999999999999999999999885 789999999998888777777644433
No 167
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=39.72 E-value=11 Score=38.51 Aligned_cols=22 Identities=36% Similarity=0.964 Sum_probs=20.7
Q ss_pred ccccccccccCCCCCCCcccCC
Q 009126 193 KVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 193 kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
-.|-.|.-|.|..|..|+|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 4699999999999999999999
No 168
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=33.83 E-value=2.7e+02 Score=22.98 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 359 STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 359 ~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
..++-++++..+..|+- .+|+. | .-|| ||.|.+.++|+++....++..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999974 33332 2 3454 89999999999999999999988887654
No 169
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=32.76 E-value=20 Score=30.12 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=10.7
Q ss_pred hheeeeecccccCCcc
Q 009126 523 VSIICWMFSIMVPPVR 538 (543)
Q Consensus 523 ~~~~~~~~~~~~~~~~ 538 (543)
++.-|++++|||+|-.
T Consensus 52 ~aS~C~lLkNMFDP~~ 67 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAE 67 (73)
T ss_dssp ---SEEEEESSS-TTC
T ss_pred CCCceeeeecCCCccc
Confidence 5667999999999964
No 170
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.44 E-value=2e+02 Score=33.29 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCC-CCCHHHHHHHhhcC----CCEEEEEeec---c---------C-C--------------------
Q 009126 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKF----GPVQDVRIPC---Q---------Q-K-------------------- 386 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~-~~tEedLr~~Fs~f----G~V~~VrI~~---d---------~-s-------------------- 386 (543)
+..+++|-|-|+ +| .+..+||--+|+.| |.|.+|.|-. + . .
T Consensus 171 ~~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 456789999999 88 57889999998866 6999998743 0 0 0
Q ss_pred ---------C---------ceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 387 ---------R---------MFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 387 ---------R---------GFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
| =||.|+|.+.++|.+.++..+|..+...-..
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 1 2799999999999999999999988654333
No 171
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.84 E-value=99 Score=25.47 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCEEEEEee
Q 009126 364 QDVSNYFSKFGPVQDVRIP 382 (543)
Q Consensus 364 edLr~~Fs~fG~V~~VrI~ 382 (543)
.+||++|++.|+|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999887663
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.60 E-value=1.6e+02 Score=32.95 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcC-CCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~f-G~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
..+.|+|-.+ +-.+|-.||-.|...| -.|.+++|++| ..|=...++|.+.++|..-++..||..++.
T Consensus 73 ~~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3789999999 7788999998888765 47889999997 456568999999999999999999988744
No 173
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.62 E-value=45 Score=37.65 Aligned_cols=23 Identities=39% Similarity=0.967 Sum_probs=18.0
Q ss_pred ccccc-ccccCCCCCCCcccCCCC
Q 009126 194 VCHYF-NKGFCKHGNNCRYFHGHP 216 (543)
Q Consensus 194 pC~YF-arG~Ck~G~sCrf~Hg~~ 216 (543)
-|-+| +.|+|..|-+|||+-++.
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred ccceeeccccCCccceeehhhccc
Confidence 36666 569999999999976643
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=25.36 E-value=33 Score=35.49 Aligned_cols=27 Identities=26% Similarity=0.787 Sum_probs=23.7
Q ss_pred CCCCcccccccccccCCCCCCCcccCC
Q 009126 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 188 ~~~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
.-+.-..|-.|-++.|.+|..|-|.|-
T Consensus 148 T~~rea~C~~~e~~~C~rG~~CnFmH~ 174 (260)
T KOG2202|consen 148 TDFREAICGQFERTECSRGGACNFMHV 174 (260)
T ss_pred CchhhhhhcccccccCCCCCcCcchhh
Confidence 345567899999999999999999997
No 175
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=24.77 E-value=78 Score=36.04 Aligned_cols=75 Identities=9% Similarity=0.041 Sum_probs=50.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhh-cCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEc----CeEEEEe
Q 009126 350 QIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVLVK 420 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs-~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~----Gr~V~Vk 420 (543)
++-|.++ +-..|-..|.+.-. ..|.=.-+.++.| ...|||||.|.+++++..+.++.||+.++ .+.+.+.
T Consensus 390 t~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 390 TLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 5556666 44444444444422 3666666777776 56899999999999999999998888763 2444555
Q ss_pred ecccc
Q 009126 421 PYREK 425 (543)
Q Consensus 421 ~Ak~K 425 (543)
+|+-.
T Consensus 469 YArIQ 473 (549)
T KOG4660|consen 469 YARIQ 473 (549)
T ss_pred hhhhh
Confidence 55443
No 176
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=30 Score=36.51 Aligned_cols=26 Identities=23% Similarity=1.048 Sum_probs=20.7
Q ss_pred CCCccccccc-ccccCCCCCCCcccCC
Q 009126 189 EFPVKVCHYF-NKGFCKHGNNCRYFHG 214 (543)
Q Consensus 189 ~~~~kpC~YF-arG~Ck~G~sCrf~Hg 214 (543)
.+..-+|+=| --|||-.|-+|+|+|-
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhh
Confidence 3445678865 4599999999999996
No 177
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=21.76 E-value=55 Score=29.80 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=26.5
Q ss_pred CHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHH-HHHHHHH
Q 009126 362 TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAE-TVKQILA 405 (543)
Q Consensus 362 tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e-~A~~Al~ 405 (543)
+.+.|++.|+.|.+++ |+..++ .+.|++.|.|...- ....|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999999974 767665 46899999998753 3333433
No 178
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.75 E-value=46 Score=35.90 Aligned_cols=27 Identities=41% Similarity=0.872 Sum_probs=23.9
Q ss_pred CCCccccccccc--ccCCCCCCCcccCCC
Q 009126 189 EFPVKVCHYFNK--GFCKHGNNCRYFHGH 215 (543)
Q Consensus 189 ~~~~kpC~YFar--G~Ck~G~sCrf~Hg~ 215 (543)
+..-|.|.||.+ |.|..|+.|-|.|-.
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~~ 274 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHLL 274 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCcccccccc
Confidence 557899999987 899999999999974
No 179
>PHA02887 EGF-like protein; Provisional
Probab=20.67 E-value=45 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.0
Q ss_pred cccccccccccCCCCCCCcccCC
Q 009126 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
..||.=-.++||-|| .|+|.+.
T Consensus 83 f~pC~~eyk~YCiHG-~C~yI~d 104 (126)
T PHA02887 83 FEKCKNDFNDFCING-ECMNIID 104 (126)
T ss_pred ccccChHhhCEeeCC-EEEcccc
Confidence 679999999999998 9999776
No 180
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.55 E-value=89 Score=32.32 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=24.6
Q ss_pred EEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccc
Q 009126 390 GFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 390 GFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~ 426 (543)
|||||++..+|..|++....+ .++.+.|..|-+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcc
Confidence 799999999999999864222 33555666665443
No 181
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.06 E-value=61 Score=32.11 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=51.3
Q ss_pred eEEEcCCCCCCCCHH----HHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCe-EEEEeeccc
Q 009126 350 QIYLTFPAESTFTEQ----DVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYRE 424 (543)
Q Consensus 350 tIfVg~L~~~~~tEe----dLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr-~V~Vk~Ak~ 424 (543)
++.+..+....+++. ...++|-+|-+..-.++.+ +.++--|.|.+++.|..|..++....+.|. .++...+++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 456666633333333 3445556666554444443 666777899999999999999999999998 787777776
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
..
T Consensus 90 ~~ 91 (193)
T KOG4019|consen 90 GH 91 (193)
T ss_pred CC
Confidence 54
Done!