Query 009126
Match_columns 543
No_of_seqs 363 out of 1817
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 19:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 8.6E-24 3E-28 210.0 10.7 94 332-428 118-232 (240)
2 4f25_A Polyadenylate-binding p 99.7 7.3E-18 2.5E-22 147.5 9.5 81 347-428 4-86 (115)
3 4fxv_A ELAV-like protein 1; RN 99.7 1.1E-17 3.7E-22 143.4 10.1 77 347-424 18-98 (99)
4 3s8s_A Histone-lysine N-methyl 99.7 3.5E-17 1.2E-21 143.1 11.5 81 346-427 4-88 (110)
5 2lxi_A RNA-binding protein 10; 99.7 1.1E-17 3.6E-22 141.0 7.5 80 348-428 1-86 (91)
6 3mdf_A Peptidyl-prolyl CIS-tra 99.7 8E-17 2.7E-21 131.8 10.1 79 344-423 3-85 (85)
7 1whw_A Hypothetical protein ri 99.7 1.5E-16 5.2E-21 134.2 11.9 82 345-427 5-90 (99)
8 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.8E-17 2.3E-21 132.8 9.3 80 346-426 4-87 (87)
9 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.2E-16 7.6E-21 134.3 12.7 83 344-427 11-95 (103)
10 3md1_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 130.6 9.9 77 349-426 2-82 (83)
11 2cq3_A RNA-binding protein 9; 99.7 2.8E-16 9.5E-21 133.7 12.9 84 344-428 11-96 (103)
12 2x1f_A MRNA 3'-END-processing 99.7 2.5E-16 8.6E-21 132.5 12.0 82 348-430 2-87 (96)
13 2e5h_A Zinc finger CCHC-type a 99.7 3.6E-16 1.2E-20 130.4 12.8 80 343-423 11-94 (94)
14 4f02_A Polyadenylate-binding p 99.7 3.4E-17 1.2E-21 156.8 7.3 85 347-432 102-188 (213)
15 2dgs_A DAZ-associated protein 99.7 1.7E-16 6E-21 134.0 10.6 83 344-428 6-92 (99)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.5E-16 5.1E-21 134.9 10.2 85 343-428 7-95 (102)
17 2cq0_A Eukaryotic translation 99.7 1.9E-16 6.4E-21 134.7 10.7 83 345-428 12-98 (103)
18 4a8x_A RNA-binding protein wit 99.7 2.1E-16 7.2E-21 129.9 10.5 79 347-426 3-86 (88)
19 2dgx_A KIAA0430 protein; RRM d 99.7 2.9E-16 9.8E-21 132.8 11.5 81 346-427 7-92 (96)
20 2wbr_A GW182, gawky, LD47780P; 99.7 2.1E-16 7.2E-21 134.7 10.5 76 345-423 4-79 (89)
21 1x5u_A Splicing factor 3B subu 99.7 2.9E-16 1E-20 133.8 11.4 83 344-427 11-97 (105)
22 2dnz_A Probable RNA-binding pr 99.7 1.9E-16 6.6E-21 132.3 9.9 81 346-427 3-87 (95)
23 1x5t_A Splicing factor 3B subu 99.7 1.4E-16 4.9E-21 133.4 9.1 82 346-428 3-89 (96)
24 1sjq_A Polypyrimidine tract-bi 99.7 1.5E-16 5.1E-21 139.4 9.3 81 345-428 13-95 (105)
25 1x4h_A RNA-binding protein 28; 99.7 4.8E-16 1.6E-20 133.5 12.3 83 345-428 12-104 (111)
26 1x4a_A Splicing factor, argini 99.7 5.4E-16 1.8E-20 133.4 12.6 82 345-427 19-101 (109)
27 2dnm_A SRP46 splicing factor; 99.7 1.6E-16 5.6E-21 135.1 9.0 82 345-427 10-95 (103)
28 2do4_A Squamous cell carcinoma 99.7 3.1E-16 1E-20 132.7 10.5 81 346-427 15-98 (100)
29 2cqc_A Arginine/serine-rich sp 99.7 4.9E-16 1.7E-20 129.6 11.4 80 344-424 11-94 (95)
30 2dgo_A Cytotoxic granule-assoc 99.7 4.9E-16 1.7E-20 134.7 11.7 83 345-428 12-98 (115)
31 2e5j_A Methenyltetrahydrofolat 99.7 2.1E-16 7.2E-21 133.5 8.9 82 343-426 14-95 (97)
32 2jvr_A Nucleolar protein 3; RN 99.7 3E-16 1E-20 138.1 10.2 81 345-426 25-106 (111)
33 2err_A Ataxin-2-binding protei 99.7 2.6E-16 8.9E-21 136.4 9.5 83 343-426 24-108 (109)
34 2cpf_A RNA binding motif prote 99.7 3.9E-16 1.3E-20 131.4 10.3 81 346-427 3-90 (98)
35 1x5s_A Cold-inducible RNA-bind 99.7 2.1E-16 7E-21 134.1 8.5 84 343-427 7-94 (102)
36 2ytc_A PRE-mRNA-splicing facto 99.7 6.1E-16 2.1E-20 126.7 11.0 76 345-423 9-85 (85)
37 3ns6_A Eukaryotic translation 99.6 5.1E-17 1.7E-21 138.8 4.5 79 348-427 6-95 (100)
38 2lkz_A RNA-binding protein 5; 99.6 1.9E-16 6.3E-21 135.5 7.9 78 346-424 7-94 (95)
39 2dnh_A Bruno-like 5, RNA bindi 99.6 3.8E-16 1.3E-20 133.1 9.9 84 344-428 11-100 (105)
40 2cpz_A CUG triplet repeat RNA- 99.6 3.1E-16 1.1E-20 136.2 9.4 82 345-427 22-107 (115)
41 1oo0_B CG8781-PA, drosophila Y 99.6 4.9E-16 1.7E-20 133.6 10.5 81 346-427 24-108 (110)
42 2la4_A Nuclear and cytoplasmic 99.6 3.2E-16 1.1E-20 132.8 8.9 77 346-425 25-101 (101)
43 2d9p_A Polyadenylate-binding p 99.6 3.4E-16 1.1E-20 133.2 9.0 82 346-428 13-96 (103)
44 1s79_A Lupus LA protein; RRM, 99.6 1.9E-16 6.5E-21 137.0 7.5 78 346-425 9-89 (103)
45 2cph_A RNA binding motif prote 99.6 7.3E-16 2.5E-20 131.5 11.0 83 345-428 12-100 (107)
46 1p27_B RNA-binding protein 8A; 99.6 3.2E-16 1.1E-20 133.7 8.4 80 346-426 21-104 (106)
47 2dgv_A HnRNP M, heterogeneous 99.6 3.7E-16 1.3E-20 129.9 8.5 82 345-427 5-88 (92)
48 2do0_A HnRNP M, heterogeneous 99.6 9.6E-16 3.3E-20 132.4 11.4 82 344-426 11-95 (114)
49 3p5t_L Cleavage and polyadenyl 99.6 7.1E-17 2.4E-21 134.8 4.0 78 349-427 2-85 (90)
50 2cpi_A CCR4-NOT transcription 99.6 3.3E-16 1.1E-20 136.0 8.3 80 346-426 13-102 (111)
51 1nu4_A U1A RNA binding domain; 99.6 4.5E-16 1.5E-20 130.6 8.9 83 346-429 6-93 (97)
52 3ucg_A Polyadenylate-binding p 99.6 7.1E-16 2.4E-20 127.2 9.9 76 348-425 6-85 (89)
53 2ywk_A Putative RNA-binding pr 99.6 5.3E-16 1.8E-20 129.6 9.1 78 346-424 14-94 (95)
54 2dgp_A Bruno-like 4, RNA bindi 99.6 5.2E-16 1.8E-20 132.5 9.2 82 345-427 10-98 (106)
55 3r27_A HnRNP L, heterogeneous 99.6 7.3E-16 2.5E-20 133.9 10.3 81 343-426 16-98 (100)
56 1x4c_A Splicing factor, argini 99.6 1.9E-15 6.4E-20 130.4 12.8 79 346-428 13-96 (108)
57 2dgu_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 130.1 11.4 79 346-429 9-87 (103)
58 1x4d_A Matrin 3; structural ge 99.6 4E-16 1.4E-20 135.6 8.5 79 346-427 13-94 (102)
59 2dnq_A RNA-binding protein 4B; 99.6 7.5E-16 2.6E-20 128.1 9.7 78 345-427 5-82 (90)
60 2cq1_A PTB-like protein L; RRM 99.6 1E-15 3.4E-20 132.5 10.7 80 345-427 12-93 (101)
61 2dh8_A DAZ-associated protein 99.6 7.3E-16 2.5E-20 131.5 9.7 82 345-428 13-98 (105)
62 1u6f_A Tcubp1, RNA-binding pro 99.6 1.7E-15 6E-20 135.4 12.5 84 344-428 38-125 (139)
63 2a3j_A U1 small nuclear ribonu 99.6 5.3E-16 1.8E-20 139.6 9.1 84 345-429 26-114 (127)
64 3s7r_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 125.6 10.6 76 345-422 8-87 (87)
65 2xnq_A Nuclear polyadenylated 99.6 1.3E-15 4.6E-20 129.4 11.1 79 343-426 17-96 (97)
66 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.5E-20 132.1 11.2 81 345-427 22-106 (109)
67 1why_A Hypothetical protein ri 99.6 8.9E-16 3E-20 129.4 9.8 79 346-427 15-95 (97)
68 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-15 3.9E-20 131.6 10.4 80 346-428 23-102 (109)
69 3n9u_C Cleavage and polyadenyl 99.6 7.3E-16 2.5E-20 142.8 9.9 80 347-427 54-139 (156)
70 2dgt_A RNA-binding protein 30; 99.6 2.1E-15 7.1E-20 125.9 11.7 78 345-427 7-84 (92)
71 2cqd_A RNA-binding region cont 99.6 2.3E-15 7.7E-20 130.9 12.4 81 345-427 14-98 (116)
72 2div_A TRNA selenocysteine ass 99.6 7.6E-16 2.6E-20 129.8 9.0 81 345-426 6-95 (99)
73 2khc_A Testis-specific RNP-typ 99.6 1.2E-15 4.1E-20 132.8 10.2 78 345-423 37-118 (118)
74 2ad9_A Polypyrimidine tract-bi 99.6 6.4E-16 2.2E-20 138.1 8.6 82 344-428 27-110 (119)
75 2cpj_A Non-POU domain-containi 99.6 8.8E-16 3E-20 129.9 9.0 80 345-427 12-91 (99)
76 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.8E-15 9.5E-20 133.4 12.7 79 343-422 58-140 (140)
77 2dng_A Eukaryotic translation 99.6 1.8E-15 6.1E-20 128.9 10.9 79 346-427 13-95 (103)
78 1p1t_A Cleavage stimulation fa 99.6 5.1E-16 1.7E-20 131.8 7.5 83 347-430 7-93 (104)
79 2jrs_A RNA-binding protein 39; 99.6 6.4E-16 2.2E-20 134.0 8.2 81 345-426 23-107 (108)
80 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 4.2E-20 128.0 9.7 79 345-427 8-86 (89)
81 2cpe_A RNA-binding protein EWS 99.6 1.1E-15 3.8E-20 132.1 9.6 82 346-428 13-106 (113)
82 2fy1_A RNA-binding motif prote 99.6 1.1E-15 3.7E-20 134.2 9.5 82 346-428 5-89 (116)
83 2kxn_B Transformer-2 protein h 99.6 9E-16 3.1E-20 137.6 9.2 81 345-426 43-127 (129)
84 2nlw_A Eukaryotic translation 99.6 1.4E-15 4.8E-20 130.7 10.0 80 347-427 14-102 (105)
85 3lqv_A PRE-mRNA branch site pr 99.6 1.1E-15 3.7E-20 132.5 9.3 80 346-426 6-86 (115)
86 2kt5_A RNA and export factor-b 99.6 2.6E-15 8.9E-20 132.2 11.7 84 343-427 30-116 (124)
87 3ex7_B RNA-binding protein 8A; 99.6 1.1E-15 3.7E-20 134.6 9.1 84 345-429 19-106 (126)
88 2la6_A RNA-binding protein FUS 99.6 8.7E-16 3E-20 129.9 8.2 79 344-423 9-99 (99)
89 2cq4_A RNA binding motif prote 99.6 8.4E-16 2.9E-20 133.2 8.3 78 347-426 24-105 (114)
90 2dgw_A Probable RNA-binding pr 99.6 2.6E-15 8.8E-20 124.9 10.9 79 346-427 8-89 (91)
91 1wex_A Hypothetical protein (r 99.6 9.4E-16 3.2E-20 133.2 8.5 80 345-427 12-93 (104)
92 2cqp_A RNA-binding protein 12; 99.6 8.8E-16 3E-20 129.2 8.1 82 344-426 11-96 (98)
93 1wi8_A EIF-4B, eukaryotic tran 99.6 3.1E-15 1.1E-19 127.6 11.5 80 346-428 13-97 (104)
94 2cpd_A Apobec-1 stimulating pr 99.6 5.3E-15 1.8E-19 125.1 12.8 79 344-427 11-91 (99)
95 2dnp_A RNA-binding protein 14; 99.6 2.7E-15 9.1E-20 124.8 10.8 78 345-427 6-83 (90)
96 2dhg_A TRNA selenocysteine ass 99.6 7.1E-16 2.4E-20 131.2 7.3 81 346-427 7-92 (104)
97 2mss_A Protein (musashi1); RNA 99.6 5.4E-16 1.9E-20 124.4 6.2 71 350-422 1-75 (75)
98 3ulh_A THO complex subunit 4; 99.6 2.1E-15 7.2E-20 128.9 10.2 78 345-423 26-106 (107)
99 2dis_A Unnamed protein product 99.6 1.1E-15 3.9E-20 130.9 8.6 83 346-429 6-96 (109)
100 2cqg_A TDP-43, TAR DNA-binding 99.6 4.6E-15 1.6E-19 126.1 12.0 81 345-428 12-96 (103)
101 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 131.1 10.1 80 347-428 26-109 (116)
102 1x5p_A Negative elongation fac 99.6 7.6E-15 2.6E-19 123.9 13.1 78 346-428 13-90 (97)
103 3md3_A Nuclear and cytoplasmic 99.6 3.5E-15 1.2E-19 134.0 11.7 79 345-424 84-166 (166)
104 2kn4_A Immunoglobulin G-bindin 99.6 2.3E-15 7.8E-20 137.2 10.4 81 346-427 68-152 (158)
105 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.3E-16 2.2E-20 131.6 6.3 79 345-426 16-99 (100)
106 2cpy_A RNA-binding protein 12; 99.6 2E-15 6.8E-20 131.6 9.6 81 345-427 12-96 (114)
107 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.1E-15 1E-19 136.7 11.0 83 344-427 35-121 (156)
108 2jvo_A Nucleolar protein 3; nu 99.6 2.6E-15 8.9E-20 130.4 9.8 78 345-427 28-105 (108)
109 2i2y_A Fusion protein consists 99.6 1.9E-15 6.6E-20 137.2 9.3 81 344-426 69-149 (150)
110 2hvz_A Splicing factor, argini 99.6 7.6E-16 2.6E-20 130.5 6.0 77 349-427 1-77 (101)
111 2m2b_A RNA-binding protein 10; 99.6 6.9E-16 2.4E-20 137.7 5.7 80 346-427 21-110 (131)
112 2kvi_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 128.9 6.6 78 345-427 7-85 (96)
113 1wg5_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 128.1 9.6 78 346-425 13-94 (104)
114 2cqh_A IGF-II mRNA-binding pro 99.6 1.9E-15 6.5E-20 126.2 7.8 79 346-428 6-86 (93)
115 1whx_A Hypothetical protein ri 99.6 2.1E-15 7.1E-20 131.4 8.3 76 347-425 9-84 (111)
116 1x4e_A RNA binding motif, sing 99.6 5.6E-16 1.9E-20 127.2 4.3 77 346-423 3-83 (85)
117 2ek1_A RNA-binding protein 12; 99.6 9.5E-16 3.2E-20 128.1 5.7 79 345-424 12-94 (95)
118 2krb_A Eukaryotic translation 99.6 1.4E-15 4.7E-20 124.3 6.5 72 348-420 1-81 (81)
119 2jwn_A Embryonic polyadenylate 99.6 3.5E-15 1.2E-19 131.0 9.4 77 348-426 36-116 (124)
120 2fc9_A NCL protein; structure 99.6 4.8E-15 1.6E-19 125.6 9.9 80 344-427 11-93 (101)
121 1uaw_A Mouse-musashi-1; RNP-ty 99.6 9.8E-16 3.4E-20 123.0 5.2 72 349-422 1-76 (77)
122 2ki2_A SS-DNA binding protein 99.6 4.2E-16 1.4E-20 129.2 3.1 77 349-427 2-82 (90)
123 2cpx_A Hypothetical protein FL 99.6 3.2E-15 1.1E-19 129.3 8.6 83 345-428 22-108 (115)
124 1x4f_A Matrin 3; structural ge 99.6 1.4E-15 4.7E-20 134.6 6.3 81 345-428 22-105 (112)
125 2cq2_A Hypothetical protein LO 99.6 4.3E-15 1.5E-19 132.0 9.4 79 346-427 23-108 (114)
126 1l3k_A Heterogeneous nuclear r 99.6 6.9E-15 2.3E-19 136.4 11.0 84 346-431 102-189 (196)
127 2db1_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 132.8 7.1 79 346-426 15-99 (118)
128 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.6E-15 1.6E-19 137.3 9.7 83 346-429 70-156 (165)
129 1wf1_A RNA-binding protein RAL 99.6 6.3E-15 2.1E-19 127.1 9.3 76 346-426 25-101 (110)
130 2e44_A Insulin-like growth fac 99.6 7E-15 2.4E-19 123.2 9.1 79 346-425 13-92 (96)
131 2dnn_A RNA-binding protein 12; 99.6 5.8E-15 2E-19 129.4 8.9 75 348-425 16-93 (109)
132 2lea_A Serine/arginine-rich sp 99.6 2.1E-15 7E-20 136.1 6.1 82 346-428 45-130 (135)
133 2hgl_A HNRPF protein, heteroge 99.6 2.8E-15 9.6E-20 136.4 6.8 79 346-426 42-126 (136)
134 1fjc_A Nucleolin RBD2, protein 99.6 4.9E-15 1.7E-19 124.2 7.7 80 346-427 14-93 (96)
135 1fj7_A Nucleolin RBD1, protein 99.6 1.3E-15 4.4E-20 129.1 4.0 79 346-427 15-97 (101)
136 1iqt_A AUF1, heterogeneous nuc 99.6 2E-15 6.8E-20 120.9 4.5 71 350-422 1-75 (75)
137 1wg1_A KIAA1579 protein, homol 99.6 9E-15 3.1E-19 121.5 8.7 76 347-426 4-79 (88)
138 2lmi_A GRSF-1, G-rich sequence 99.5 2.2E-15 7.7E-20 129.9 5.0 79 346-426 9-93 (107)
139 1x5o_A RNA binding motif, sing 99.5 8.4E-15 2.9E-19 126.7 8.5 80 346-426 23-113 (114)
140 2e5g_A U6 snRNA-specific termi 99.5 1.3E-14 4.3E-19 121.8 9.3 79 346-427 6-84 (94)
141 3q2s_C Cleavage and polyadenyl 99.5 3.8E-15 1.3E-19 146.0 6.8 79 347-426 67-151 (229)
142 1wf0_A TDP-43, TAR DNA-binding 99.5 7.3E-15 2.5E-19 121.6 7.4 78 346-427 3-80 (88)
143 1wel_A RNA-binding protein 12; 99.5 2.1E-15 7.1E-20 133.2 4.4 80 346-427 23-106 (124)
144 3egn_A RNA-binding protein 40; 99.5 6.8E-15 2.3E-19 132.6 7.8 83 346-429 43-134 (143)
145 1wez_A HnRNP H', FTP-3, hetero 99.5 5.4E-15 1.8E-19 127.2 6.5 79 345-426 12-93 (102)
146 2xs2_A Deleted in azoospermia- 99.5 4.6E-15 1.6E-19 125.9 6.0 80 347-429 8-90 (102)
147 1sjr_A Polypyrimidine tract-bi 99.5 1.5E-14 5E-19 136.2 9.5 78 348-426 46-125 (164)
148 3tyt_A Heterogeneous nuclear r 99.5 2.4E-14 8.1E-19 137.8 11.0 79 346-426 2-81 (205)
149 2qfj_A FBP-interacting repress 99.5 5.4E-15 1.9E-19 139.2 6.2 81 346-427 123-207 (216)
150 2fc8_A NCL protein; structure 99.5 2.4E-14 8.2E-19 121.3 9.3 80 344-427 11-94 (102)
151 2hzc_A Splicing factor U2AF 65 99.5 2.8E-14 9.6E-19 117.0 9.1 71 347-421 5-86 (87)
152 2lcw_A RNA-binding protein FUS 99.3 9.4E-16 3.2E-20 133.5 0.0 81 346-427 5-97 (116)
153 2bz2_A Negative elongation fac 99.5 1.8E-14 6.2E-19 127.8 8.0 78 346-428 37-114 (121)
154 4f02_A Polyadenylate-binding p 99.5 3.3E-14 1.1E-18 136.0 10.1 81 346-427 13-97 (213)
155 1fje_B Nucleolin RBD12, protei 99.5 6E-14 2.1E-18 128.3 11.0 79 346-426 97-175 (175)
156 1b7f_A Protein (SXL-lethal pro 99.5 4.6E-14 1.6E-18 127.5 10.0 80 347-427 2-85 (168)
157 1fxl_A Paraneoplastic encephal 99.5 5.9E-14 2E-18 126.1 10.4 79 348-427 2-84 (167)
158 2dha_A FLJ20171 protein; RRM d 99.5 1.3E-14 4.3E-19 130.0 5.5 78 347-426 22-106 (123)
159 3beg_B Splicing factor, argini 99.5 1.9E-14 6.6E-19 125.9 6.5 76 347-426 15-95 (115)
160 3md3_A Nuclear and cytoplasmic 99.5 4.7E-14 1.6E-18 126.6 9.0 77 349-426 1-80 (166)
161 3zzy_A Polypyrimidine tract-bi 99.5 8.9E-14 3E-18 126.2 10.6 77 348-426 28-107 (130)
162 2f3j_A RNA and export factor b 99.5 5E-14 1.7E-18 132.9 9.3 83 344-427 84-169 (177)
163 2hgn_A Heterogeneous nuclear r 99.5 1E-14 3.6E-19 133.2 4.3 79 346-427 44-125 (139)
164 2e5i_A Heterogeneous nuclear r 99.5 9.2E-14 3.1E-18 124.9 10.1 74 350-426 27-103 (124)
165 2cjk_A Nuclear polyadenylated 99.5 3.7E-14 1.3E-18 128.2 7.5 78 347-426 86-167 (167)
166 3nmr_A Cugbp ELAV-like family 99.5 8.5E-14 2.9E-18 126.3 9.8 77 346-423 93-175 (175)
167 2hgm_A HNRPF protein, heteroge 99.5 3.3E-14 1.1E-18 128.0 6.8 77 346-425 40-121 (126)
168 1b7f_A Protein (SXL-lethal pro 99.5 1E-13 3.5E-18 125.1 9.9 76 346-422 87-168 (168)
169 1fxl_A Paraneoplastic encephal 99.5 8.2E-14 2.8E-18 125.2 8.2 76 346-422 86-167 (167)
170 2dnl_A Cytoplasmic polyadenyla 99.5 1.6E-13 5.5E-18 119.5 9.7 76 346-425 6-88 (114)
171 2adc_A Polypyrimidine tract-bi 99.5 1E-13 3.5E-18 134.1 9.1 83 342-426 28-111 (229)
172 2yh0_A Splicing factor U2AF 65 99.5 1.4E-13 4.7E-18 127.8 9.6 81 346-427 112-196 (198)
173 2ghp_A U4/U6 snRNA-associated 99.5 3.6E-13 1.2E-17 133.5 13.1 81 344-426 206-292 (292)
174 1l3k_A Heterogeneous nuclear r 99.5 1.6E-13 5.6E-18 127.1 9.9 80 346-427 11-94 (196)
175 3pgw_S U1-70K; protein-RNA com 99.5 2E-13 6.8E-18 145.8 11.9 82 345-427 99-184 (437)
176 2g4b_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 125.4 8.5 76 346-422 92-171 (172)
177 2pe8_A Splicing factor 45; RRM 99.4 2.7E-13 9.1E-18 117.9 10.2 79 346-424 6-93 (105)
178 2dit_A HIV TAT specific factor 99.4 4.8E-13 1.6E-17 116.3 11.3 83 345-427 12-104 (112)
179 3pgw_A U1-A; protein-RNA compl 99.4 3.3E-13 1.1E-17 133.2 11.5 82 345-427 6-92 (282)
180 3smz_A Protein raver-1, ribonu 99.4 2.9E-13 1E-17 133.7 10.8 84 346-430 182-269 (284)
181 2qfj_A FBP-interacting repress 99.4 2.7E-13 9.4E-18 127.5 9.9 80 348-428 28-111 (216)
182 2voo_A Lupus LA protein; RNA-b 99.4 3.1E-13 1E-17 129.1 10.1 76 348-425 109-187 (193)
183 2diu_A KIAA0430 protein; struc 99.4 3.2E-13 1.1E-17 116.4 8.6 77 346-429 6-88 (96)
184 3nmr_A Cugbp ELAV-like family 99.4 2.9E-13 1E-17 122.7 7.8 79 347-426 2-89 (175)
185 3pgw_A U1-A; protein-RNA compl 99.4 7.4E-13 2.5E-17 130.7 11.3 78 345-424 204-282 (282)
186 2cjk_A Nuclear polyadenylated 99.4 4E-13 1.4E-17 121.4 8.5 77 347-426 2-82 (167)
187 1qm9_A Polypyrimidine tract-bi 99.4 2.3E-13 7.9E-18 127.3 6.9 78 347-426 2-80 (198)
188 3sde_A Paraspeckle component 1 99.4 5.1E-13 1.7E-17 131.8 9.3 79 347-426 95-180 (261)
189 2j8a_A Histone-lysine N-methyl 99.4 8.3E-13 2.9E-17 120.1 7.5 75 349-423 3-94 (136)
190 3sde_A Paraspeckle component 1 99.3 2.4E-12 8.1E-17 126.9 10.8 78 346-426 20-97 (261)
191 2yh0_A Splicing factor U2AF 65 99.3 2.2E-12 7.5E-17 119.7 9.8 77 346-426 2-89 (198)
192 1fje_B Nucleolin RBD12, protei 99.3 9.7E-13 3.3E-17 120.2 6.8 81 345-427 10-93 (175)
193 2g4b_A Splicing factor U2AF 65 99.3 2.6E-12 8.9E-17 116.6 9.5 75 347-425 3-88 (172)
194 1qm9_A Polypyrimidine tract-bi 99.3 2.5E-12 8.5E-17 120.3 8.7 79 345-425 117-197 (198)
195 2adc_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 123.3 9.4 79 345-425 148-228 (229)
196 1jmt_A Splicing factor U2AF 35 99.3 9.2E-13 3.1E-17 114.1 4.0 69 353-422 20-103 (104)
197 3v4m_A Splicing factor U2AF 65 99.3 6E-12 2E-16 109.3 8.8 80 346-425 3-97 (105)
198 3smz_A Protein raver-1, ribonu 99.3 7.3E-12 2.5E-16 123.7 10.5 80 346-426 93-176 (284)
199 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.7E-11 5.7E-16 106.1 11.4 79 346-427 8-92 (100)
200 3tyt_A Heterogeneous nuclear r 99.3 4.8E-12 1.6E-16 121.6 7.1 76 346-422 121-204 (205)
201 2ghp_A U4/U6 snRNA-associated 99.3 9.6E-12 3.3E-16 123.3 9.3 80 347-427 116-199 (292)
202 3tht_A Alkylated DNA repair pr 99.3 1.5E-11 5E-16 128.1 10.8 78 343-423 13-97 (345)
203 3s6e_A RNA-binding protein 39; 99.2 1.7E-11 5.8E-16 108.4 8.9 80 346-425 5-93 (114)
204 3ue2_A Poly(U)-binding-splicin 99.2 1.2E-11 4E-16 110.0 7.4 78 347-424 19-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 1.8E-09 6.1E-14 92.3 9.2 78 343-425 2-86 (91)
206 1ufw_A Synaptojanin 2; RNP dom 98.7 3.3E-08 1.1E-12 85.0 7.0 75 342-422 9-92 (95)
207 1owx_A Lupus LA protein, SS-B, 98.6 9.9E-08 3.4E-12 85.5 8.6 76 345-423 15-94 (121)
208 3dxb_A Thioredoxin N-terminall 98.6 4.4E-08 1.5E-12 93.9 6.0 64 361-424 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 97.3 0.00091 3.1E-08 59.1 9.0 74 348-424 21-99 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.2 0.0017 5.8E-08 56.6 9.8 75 346-426 6-85 (104)
211 2d9n_A Cleavage and polyadenyl 96.7 0.00069 2.4E-08 55.6 2.5 26 189-214 7-32 (77)
212 1wwh_A Nucleoporin 35, nucleop 96.6 0.0088 3E-07 53.3 8.9 75 347-426 23-98 (119)
213 2rhk_C Cleavage and polyadenyl 96.5 0.00048 1.7E-08 56.1 0.5 25 190-214 14-38 (72)
214 1wey_A Calcipressin 1; structu 96.5 0.0038 1.3E-07 54.5 5.8 76 348-425 5-84 (104)
215 3d2q_A Muscleblind-like protei 96.1 0.0015 5.1E-08 52.7 1.1 23 192-214 6-29 (70)
216 2cqe_A KIAA1064 protein; CCCH 96.0 0.0023 7.9E-08 55.0 1.9 23 192-214 13-35 (98)
217 2d9m_A Zinc finger CCCH-type d 95.8 0.0021 7.3E-08 52.1 1.0 23 192-214 20-42 (69)
218 3p3d_A Nucleoporin 53; structu 95.7 0.011 3.7E-07 53.6 5.3 72 350-424 9-98 (132)
219 1m9o_A Tristetraproline; Cys3H 95.6 0.0044 1.5E-07 50.2 2.1 26 189-214 9-35 (77)
220 3d2q_A Muscleblind-like protei 95.5 0.0038 1.3E-07 50.3 1.2 23 191-214 41-63 (70)
221 2cqe_A KIAA1064 protein; CCCH 95.5 0.004 1.4E-07 53.5 1.4 23 192-214 36-59 (98)
222 3d2n_A Muscleblind-like protei 95.5 0.0049 1.7E-07 51.6 1.9 23 192-214 9-32 (83)
223 1m9o_A Tristetraproline; Cys3H 95.0 0.004 1.4E-07 50.4 0.0 24 191-214 49-73 (77)
224 1nmr_A Poly(A)-binding protein 94.9 0.011 3.9E-07 49.6 2.3 52 8-62 29-80 (85)
225 2e5s_A Otthump00000018578; ZF- 94.8 0.007 2.4E-07 52.1 0.9 24 190-214 54-77 (98)
226 1ifw_A Polyadenylate-binding p 94.8 0.018 6.1E-07 49.2 3.3 52 8-62 26-79 (92)
227 1i2t_A HYD protein; four alpha 94.7 0.011 3.8E-07 46.8 1.8 51 8-61 7-57 (61)
228 2rpp_A Muscleblind-like protei 94.7 0.0078 2.7E-07 51.0 1.0 23 192-214 17-40 (89)
229 2e5s_A Otthump00000018578; ZF- 94.6 0.0037 1.3E-07 53.8 -1.2 23 192-214 20-43 (98)
230 3d2n_A Muscleblind-like protei 94.0 0.015 5E-07 48.7 1.1 24 190-214 41-64 (83)
231 3pq1_A Poly(A) RNA polymerase; 93.7 0.023 7.9E-07 61.2 2.2 56 348-406 53-108 (464)
232 2dyd_A Poly(A)-binding protein 93.5 0.021 7.2E-07 48.0 1.3 52 8-62 28-79 (85)
233 1g9l_A Polyadenylate-binding p 93.5 0.032 1.1E-06 51.2 2.6 52 9-63 73-124 (144)
234 2d9n_A Cleavage and polyadenyl 93.2 0.033 1.1E-06 45.5 1.9 23 192-215 38-61 (77)
235 3kuj_A Polyadenylate-binding p 92.9 0.047 1.6E-06 46.2 2.4 51 8-61 26-76 (88)
236 2rhk_C Cleavage and polyadenyl 92.8 0.025 8.6E-07 45.9 0.7 24 191-215 43-67 (72)
237 2kn4_A Immunoglobulin G-bindin 92.4 0.05 1.7E-06 48.6 2.2 33 378-410 2-36 (158)
238 2rpp_A Muscleblind-like protei 91.5 0.05 1.7E-06 46.1 0.9 23 191-214 50-72 (89)
239 1uw4_A UPF3X; nonsense mediate 91.1 0.63 2.2E-05 39.4 7.4 65 349-414 2-72 (91)
240 1whv_A Poly(A)-specific ribonu 88.7 0.81 2.8E-05 39.5 6.2 54 348-407 16-69 (100)
241 2i2y_A Fusion protein consists 88.6 0.092 3.1E-06 46.7 0.3 41 385-426 11-52 (150)
242 3ctr_A Poly(A)-specific ribonu 85.3 0.87 3E-05 39.4 4.5 54 349-408 7-60 (101)
243 2fc6_A Nuclear, target of EGR1 75.6 0.86 2.9E-05 34.5 1.0 26 190-215 18-44 (50)
244 2l08_A Regulator of nonsense t 75.2 4.7 0.00016 34.5 5.7 66 348-414 9-80 (97)
245 4f25_A Polyadenylate-binding p 64.2 0.32 1.1E-05 41.5 -4.1 20 345-365 94-113 (115)
246 3v33_A Ribonuclease ZC3H12A; r 63.5 1.4 4.7E-05 43.2 -0.2 25 188-214 188-212 (223)
247 3d45_A Poly(A)-specific ribonu 59.4 23 0.00078 38.3 8.4 55 348-408 440-494 (507)
248 3u9g_A Zinc finger CCCH-type a 49.0 5.5 0.00019 39.0 1.3 25 190-214 87-115 (229)
249 3u9g_A Zinc finger CCCH-type a 40.5 11 0.00037 36.9 1.9 23 191-214 174-196 (229)
250 2g0c_A ATP-dependent RNA helic 36.0 61 0.0021 25.2 5.4 69 350-423 2-75 (76)
251 1i25_A Huwentoxin-II, HWTX-II; 29.1 20 0.00068 25.1 1.2 22 187-211 10-31 (37)
252 3ts2_A Protein LIN-28 homolog 24.0 15 0.00052 33.3 -0.2 28 364-395 2-29 (148)
253 3dve_B Voltage-dependent N-typ 21.7 15 0.0005 23.6 -0.6 14 21-34 1-14 (23)
254 3e50_C Protransforming growth 21.4 23 0.00077 26.6 0.3 22 192-214 5-26 (50)
255 2rnl_A Amphiregulin; AR, color 21.3 22 0.00075 26.6 0.2 22 192-214 9-30 (50)
256 3dvk_B Voltage-dependent R-typ 20.2 16 0.00056 23.4 -0.6 14 21-34 2-15 (23)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.89 E-value=8.6e-24 Score=209.97 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=74.3
Q ss_pred cccCCCCCCCCCCCCCCCeEEEcCCCCCCC---------CHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHH
Q 009126 332 LEYSGEKSDPGGIVAGSRQIYLTFPAESTF---------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQ 402 (543)
Q Consensus 332 ~~~r~dr~d~g~~~~~~rtIfVg~L~~~~~---------tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~ 402 (543)
...+.++.+.+......++||||+| +..+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++
T Consensus 118 ~~~~d~~~g~gs~~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~ 194 (240)
T 3u1l_A 118 ADYREDMGGIGSFRKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEF 194 (240)
T ss_dssp GGTC---------CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHH
T ss_pred ccchhcccCcCccccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHH
Confidence 3344455555566778899999999 7777 7999999999999999999998 89999999999999999
Q ss_pred HHHhcCCeEE------------cCeEEEEeeccccccc
Q 009126 403 ILAKGNPHFV------------CGARVLVKPYREKSRL 428 (543)
Q Consensus 403 Al~~mng~~i------------~Gr~V~Vk~Ak~K~~~ 428 (543)
|++.|++..| +|+.|.|+||++++..
T Consensus 195 A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 195 AKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp HHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred HHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 9999999999 9999999999887643
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=7.3e-18 Score=147.50 Aligned_cols=81 Identities=21% Similarity=0.474 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
...+|||+|| ++++||++|+++|++||+|.+|+|+.| .+||||||+|.+.++|++|++.|+++.|+|+.|.|.++++
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4568999999 999999999999999999999999986 5689999999999999999999999999999999999988
Q ss_pred cccc
Q 009126 425 KSRL 428 (543)
Q Consensus 425 K~~~ 428 (543)
+...
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 7543
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=143.44 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|.|.+|
T Consensus 18 ~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4568999999 999999999999999999999999985 57899999999999999999999999999999999999
Q ss_pred cc
Q 009126 423 RE 424 (543)
Q Consensus 423 k~ 424 (543)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=143.06 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
++.++|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..++|+.|.|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
+..+.+
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976543
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=141.03 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeecc----CCCceEEEEECCHHHHHHHHHhc-CCeEEcCeEEEEee
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKP 421 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG-~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~Gr~V~Vk~ 421 (543)
+++|||+|| ++++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.+ ++..++|++|.|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 479999999 99999999999999999 8999999986 68999999999999999999987 56689999999999
Q ss_pred ccccccc
Q 009126 422 YREKSRL 428 (543)
Q Consensus 422 Ak~K~~~ 428 (543)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887653
No 6
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=8e-17 Score=131.80 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
..+..++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|
T Consensus 3 ~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467789999999 899999999999999999999999875 57999999999999999999999999999999999
Q ss_pred eecc
Q 009126 420 KPYR 423 (543)
Q Consensus 420 k~Ak 423 (543)
.+++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9975
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=134.16 Aligned_cols=82 Identities=27% Similarity=0.482 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999 999999999999999999999999885 578999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
+++++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988764
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=132.76 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45679999999 889999999999999999999999885 4689999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
+++|+
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 98763
No 9
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=134.28 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ .+||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999 899999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 988654
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1e-16 Score=130.59 Aligned_cols=77 Identities=12% Similarity=0.196 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
.+|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.++++
T Consensus 2 ~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999 999999999999999999999999875 5699999999999999999999999999999999999988
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=133.70 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ .++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999 999999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred ccccccc
Q 009126 422 YREKSRL 428 (543)
Q Consensus 422 Ak~K~~~ 428 (543)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887643
No 12
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=2.5e-16 Score=132.54 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
+++|||+|| ++.+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|.|.+++
T Consensus 2 ~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 579999999 999999999999999999999999986 569999999999999999999999999999999999999
Q ss_pred ccccchh
Q 009126 424 EKSRLVD 430 (543)
Q Consensus 424 ~K~~~~~ 430 (543)
++.....
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 8876543
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-16 Score=130.44 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
...+..++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|++|.
T Consensus 11 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34466789999999 899999999999999999999999885 5789999999999999999999999999999999
Q ss_pred Eeecc
Q 009126 419 VKPYR 423 (543)
Q Consensus 419 Vk~Ak 423 (543)
|.+|+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99975
No 14
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=3.4e-17 Score=156.78 Aligned_cols=85 Identities=19% Similarity=0.424 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
..++|||+|| ++++|+++|+++|++||.|++|+|+.| .+||||||+|.+.++|++|++.||++.|+|+.|.|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4569999999 999999999999999999999999986 5799999999999999999999999999999999999998
Q ss_pred cccchhhH
Q 009126 425 KSRLVDRK 432 (543)
Q Consensus 425 K~~~~~~~ 432 (543)
+.+...+.
T Consensus 181 ~~~~~~~~ 188 (213)
T 4f02_A 181 RKEREAEL 188 (213)
T ss_dssp HHHHHHHH
T ss_pred Ccccchhh
Confidence 76544333
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=134.01 Aligned_cols=83 Identities=28% Similarity=0.387 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ |+++.|+|+.|.|
T Consensus 6 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 3456789999999 999999999999999999999999985 579999999999999999999 8999999999999
Q ss_pred eeccccccc
Q 009126 420 KPYREKSRL 428 (543)
Q Consensus 420 k~Ak~K~~~ 428 (543)
.+++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999887653
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=134.91 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
......++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 7 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 7 GMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34466789999999 899999999999999999999999886 5799999999999999999999999999999999
Q ss_pred Eeeccccccc
Q 009126 419 VKPYREKSRL 428 (543)
Q Consensus 419 Vk~Ak~K~~~ 428 (543)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887543
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=134.74 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 456789999999 899999999999999999999999875 568999999999999999999999999999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887543
No 18
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=129.86 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccC-----CCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~-----sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+. ++|||||+|.+.++|++|++.||+..++|+.|.|.+
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4679999999 9999999999999999999999998863 899999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97653
No 19
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=132.79 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr----~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....+|||+|| ++++++++|+ ++|++||+|.+|+|+.| ..||||||+|.+.++|++|++.||+..++|++|+|.
T Consensus 7 ~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44679999999 9999999999 99999999999999986 239999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987653
No 20
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=2.1e-16 Score=134.68 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
...+..|||||| ++.+||++|+++|.+||+|.+++++. +||||||+|.++++|++|++.||+..++||.|+|+.|.
T Consensus 4 ~~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356779999999 99999999999999999999999988 99999999999999999999999999999999999994
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=133.76 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999 999999999999999999999999885 57999999999999999999999999999999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
.+++++.+
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99988754
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=132.32 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999 899999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
++++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 988754
No 23
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=133.37 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEE-Eeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~V-rI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
+..++|||+|| ++++|+++|+++|++||+|.+| +|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45689999999 9999999999999999999999 99885 579999999999999999999999999999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99887643
No 24
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=139.40 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CeEEcCeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~Gr~V~Vk~A 422 (543)
.+..++|||+|| ++++||++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.++ +..|+|+.|.|.++
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 356789999999 99999999999999999999999998 58999999999999999999775 58999999999999
Q ss_pred cccccc
Q 009126 423 REKSRL 428 (543)
Q Consensus 423 k~K~~~ 428 (543)
+++...
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 877543
No 25
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=133.49 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcC------CeEEcC
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGN------PHFVCG 414 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mn------g~~i~G 414 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+| ++.|+|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 355789999999 999999999999999999999999986 579999999999999999999999 999999
Q ss_pred eEEEEeeccccccc
Q 009126 415 ARVLVKPYREKSRL 428 (543)
Q Consensus 415 r~V~Vk~Ak~K~~~ 428 (543)
+.|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999887543
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=133.42 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
....++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+++
T Consensus 19 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 356789999999 899999999999999999999999886 579999999999999999999999999999999999998
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=135.10 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 10 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 355789999999 999999999999999999999999985 579999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987654
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=132.74 Aligned_cols=81 Identities=11% Similarity=0.177 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.++
T Consensus 15 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45789999999 999999999999999999999999985 56899999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88754
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.9e-16 Score=129.62 Aligned_cols=80 Identities=26% Similarity=0.287 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
..+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|++|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999999875 56899999999999999999999999999999999
Q ss_pred eeccc
Q 009126 420 KPYRE 424 (543)
Q Consensus 420 k~Ak~ 424 (543)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=4.9e-16 Score=134.68 Aligned_cols=83 Identities=16% Similarity=0.312 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356789999999 999999999999999999999999985 468999999999999999999999999999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
+++++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 31
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=133.46 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...+..++|||+|| ++++|+++|+++|++||.|. ++++.++++|||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 14 ~~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 14 EGAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 33456789999999 99999999999999999997 78888889999999999999999999999999999999999999
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8875
No 32
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=3e-16 Score=138.15 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG-~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.+...+|||+|| ++++|+++|+++|++|| +|..|+|+.++++|||||+|.+.++|++|++.||+..++|+.|.|.++.
T Consensus 25 p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 345679999999 99999999999999999 9999999877799999999999999999999999999999999999987
Q ss_pred ccc
Q 009126 424 EKS 426 (543)
Q Consensus 424 ~K~ 426 (543)
.++
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 33
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=136.36 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
......++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.
T Consensus 24 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456789999999 999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=131.41 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45689999999 999999999999999999999999864 4589999999999999999999999999999999
Q ss_pred Eeecccccc
Q 009126 419 VKPYREKSR 427 (543)
Q Consensus 419 Vk~Ak~K~~ 427 (543)
|.+++++..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999988754
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=134.06 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
...+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 7 ~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 7 GMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456789999999 999999999999999999999999985 5799999999999999999999999999999999
Q ss_pred Eeecccccc
Q 009126 419 VKPYREKSR 427 (543)
Q Consensus 419 Vk~Ak~K~~ 427 (543)
|.+++++..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999988764
No 36
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.1e-16 Score=126.73 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhc-CCeEEcCeEEEEeecc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~Gr~V~Vk~Ak 423 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.| ++..++|++|.|.+++
T Consensus 9 ~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 356789999999 88999999999999999999999998 7999999999999999999999 9999999999999975
No 37
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=5.1e-17 Score=138.76 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCC------CCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcC-eE
Q 009126 348 SRQIYLTFPAES------TFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG-AR 416 (543)
Q Consensus 348 ~rtIfVg~L~~~------~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-r~ 416 (543)
.++|||+|| ++ ++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..++| +.
T Consensus 6 ~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 579999999 88 9999999999999999999999986 579999999999999999999999999999 99
Q ss_pred EEEeecccccc
Q 009126 417 VLVKPYREKSR 427 (543)
Q Consensus 417 V~Vk~Ak~K~~ 427 (543)
|.|.++.++.+
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987654
No 38
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=135.55 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC--EEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCe----EEcCe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP--VQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCGA 415 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~--V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~----~i~Gr 415 (543)
..-+||||+|| ++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|+||
T Consensus 7 ~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34569999999 999999999999999995 679999986 68999999999999999999999875 69999
Q ss_pred EEEEeeccc
Q 009126 416 RVLVKPYRE 424 (543)
Q Consensus 416 ~V~Vk~Ak~ 424 (543)
+|.|.+|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=3.8e-16 Score=133.06 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcC---eEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCG---ARV 417 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~G---r~V 417 (543)
..+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456789999999 999999999999999999999999986 558999999999999999999999999998 999
Q ss_pred EEeeccccccc
Q 009126 418 LVKPYREKSRL 428 (543)
Q Consensus 418 ~Vk~Ak~K~~~ 428 (543)
.|.+++++...
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999887643
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=3.1e-16 Score=136.18 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.+..++|||+|| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 356789999999 999999999999999999999999985 568999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9988754
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=4.9e-16 Score=133.64 Aligned_cols=81 Identities=11% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 24 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45689999999 899999999999999999999999875 5689999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
++++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 988753
No 42
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.2e-16 Score=132.82 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
+..++|||+|| ++++|+++|+++|++||.|.+|+|+. +||||||+|.+.++|++|+..||+..++|+.|+|.+++++
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 44689999999 89999999999999999999999986 8999999999999999999999999999999999999875
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=133.18 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.+++
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46789999999 999999999999999999999999976 679999999999999999999999999999999999998
Q ss_pred ccccc
Q 009126 424 EKSRL 428 (543)
Q Consensus 424 ~K~~~ 428 (543)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
No 44
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-16 Score=137.02 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ ++++.++|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34679999999 999999999999999999999999986 689999999999999999999 7999999999999987
Q ss_pred ccc
Q 009126 423 REK 425 (543)
Q Consensus 423 k~K 425 (543)
.+.
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=131.51 Aligned_cols=83 Identities=20% Similarity=0.392 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-----CCCceEEEEECCHHHHHHHHHhc-CCeEEcCeEEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVL 418 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-----~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~Gr~V~ 418 (543)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.| |++.|+|+.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 356789999999 999999999999999999999999875 46999999999999999999999 99999999999
Q ss_pred Eeeccccccc
Q 009126 419 VKPYREKSRL 428 (543)
Q Consensus 419 Vk~Ak~K~~~ 428 (543)
|.+++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887543
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=133.75 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 21 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45679999999 999999999999999999999999875 5689999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98875
No 47
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=3.7e-16 Score=129.89 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999 899999999999999999999999875 57999999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87653
No 48
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.6e-16 Score=132.42 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
..+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3456789999999 899999999999999999999999986 568999999999999999999999999999999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
+++...
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987654
No 49
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=7.1e-17 Score=134.76 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCC--CEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG--~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
.+|||+|| ++++|+++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||+..++|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 37999999 99999999999999999 9999999986 67999999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 88754
No 50
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=135.99 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHH---HHhhcCCCEEEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCeEEcCe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVS---NYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr---~~Fs~fG~V~~VrI~~d-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr 415 (543)
...++|||+|| ++++++++|+ ++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 34679999999 9999999999 99999999999999975 3569999999999999999999999999999
Q ss_pred EEEEeeccccc
Q 009126 416 RVLVKPYREKS 426 (543)
Q Consensus 416 ~V~Vk~Ak~K~ 426 (543)
.|.|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999885
No 51
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=4.5e-16 Score=130.55 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr----~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
+..++|||+|| ++++++++|+ ++|++||+|.+|+|+.. +++|||||+|.+.++|++|++.||+..++|+.|.|.
T Consensus 6 ~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 56789999999 9999999999 99999999999999853 579999999999999999999999999999999999
Q ss_pred eccccccch
Q 009126 421 PYREKSRLV 429 (543)
Q Consensus 421 ~Ak~K~~~~ 429 (543)
+++++.+..
T Consensus 85 ~a~~~~~~~ 93 (97)
T 1nu4_A 85 YAKTDSDII 93 (97)
T ss_dssp ECSSCCTHH
T ss_pred EccCCCccc
Confidence 999886544
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=7.1e-16 Score=127.16 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .+|++.++|+.|.|.+++
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 479999999 999999999999999999999999875 57999999999999999999 899999999999999987
Q ss_pred cc
Q 009126 424 EK 425 (543)
Q Consensus 424 ~K 425 (543)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=129.64 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.++
T Consensus 14 ~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 45689999999 999999999999999999999999986 56899999999999999999999999999999999998
Q ss_pred cc
Q 009126 423 RE 424 (543)
Q Consensus 423 k~ 424 (543)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 54
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=5.2e-16 Score=132.47 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEE---cCeEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV---CGARV 417 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i---~Gr~V 417 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..+ +|+.|
T Consensus 10 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 356789999999 999999999999999999999999985 5799999999999999999999999988 99999
Q ss_pred EEeecccccc
Q 009126 418 LVKPYREKSR 427 (543)
Q Consensus 418 ~Vk~Ak~K~~ 427 (543)
.|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987754
No 55
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=133.93 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCe--EEcCeEEEEe
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPH--FVCGARVLVK 420 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~--~i~Gr~V~Vk 420 (543)
...+++++|||+|| ++++||++|+++|++||+|.+|+|++ .||||||+|.+.++|.+|++.|++. .++||+|.|.
T Consensus 16 ~~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34467899999999 89999999999999999999999997 7999999999999999999998765 4899999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998763
No 56
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=130.37 Aligned_cols=79 Identities=18% Similarity=0.082 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcC-----eEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-----ARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-----r~V~Vk 420 (543)
....+|||+|| ++++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++|++.||++.|+| +.|.|.
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 34679999999 899999999999999999999999985 999999999999999999999999999 999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
+++++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99987543
No 57
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=1.2e-15 Score=130.15 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||++.|+|+.|.|.+++++
T Consensus 9 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 45789999999 8899999999999999999999995 789999999999999999999999999999999999887
Q ss_pred ccch
Q 009126 426 SRLV 429 (543)
Q Consensus 426 ~~~~ 429 (543)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6544
No 58
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4e-16 Score=135.58 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCC--eEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP--HFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~-~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng--~~i~Gr~V~Vk~A 422 (543)
.+.++|||+|| ++ ++||++|+++|++||+|.+|+|+. .||||||+|++.++|++|++.||+ ..|+||+|.|.++
T Consensus 13 ~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 46789999999 88 999999999999999999999998 679999999999999999998874 5699999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
+.+..
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 87654
No 59
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=128.13 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..++|++|.|.++++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 356789999999 9999999999999999999999996 79999999999999999999999999999999999988
Q ss_pred ccc
Q 009126 425 KSR 427 (543)
Q Consensus 425 K~~ 427 (543)
+..
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 60
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=132.50 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhc--CCeEEcCeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG--NPHFVCGARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~m--ng~~i~Gr~V~Vk~A 422 (543)
.++.++|||+|| ++++||++|+++|++||.|.+|+|+. .||||||+|.+.++|++|++.+ ++..++|+.|.|.++
T Consensus 12 ~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 356789999999 89999999999999999999999998 5999999999999999999976 578899999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
+++..
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 87654
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=131.52 Aligned_cols=82 Identities=28% Similarity=0.427 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|.
T Consensus 13 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 356789999999 999999999999999999999999986 5689999999999999999999 9999999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99887653
No 62
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=135.41 Aligned_cols=84 Identities=24% Similarity=0.406 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.....++|||+|| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3455789999999 999999999999999999999999986 46999999999999999999999999999999999
Q ss_pred eeccccccc
Q 009126 420 KPYREKSRL 428 (543)
Q Consensus 420 k~Ak~K~~~ 428 (543)
.+++++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999987654
No 63
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=139.61 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr----~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.++.++|||+|| ++.+++++|+ ++|++||+|.+|.+... ++||||||+|.+.++|.+|++.||+..|+|+.|.|
T Consensus 26 ~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 355789999999 8999999876 69999999999999764 78999999999999999999999999999999999
Q ss_pred eeccccccch
Q 009126 420 KPYREKSRLV 429 (543)
Q Consensus 420 k~Ak~K~~~~ 429 (543)
.+++.+....
T Consensus 105 ~~a~~~~~~~ 114 (127)
T 2a3j_A 105 TFSETPQSQV 114 (127)
T ss_dssp EECCCCCHHH
T ss_pred EEccCcchhc
Confidence 9999886544
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.2e-15 Score=125.63 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.++|+.|.|+
T Consensus 8 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 356789999999 999999999999999999999999875 5699999999999999999976 8899999999999
Q ss_pred ec
Q 009126 421 PY 422 (543)
Q Consensus 421 ~A 422 (543)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 65
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.3e-15 Score=129.41 Aligned_cols=79 Identities=15% Similarity=0.352 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 343 GIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~-~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...+..++|||+|| ++ ++++++|+++|++||.|.+|+| ++|||||+|.+.++|++|++.||+..++|++|.|.+
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34467889999999 87 9999999999999999999999 589999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=1.3e-15 Score=132.11 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+ ++.++|+.|.|.
T Consensus 22 ~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 355789999999 999999999999999999999999985 57999999999999999999996 599999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9988754
No 67
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.9e-16 Score=129.39 Aligned_cols=79 Identities=10% Similarity=0.159 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEc--CeEEEEeecc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC--GARVLVKPYR 423 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~--Gr~V~Vk~Ak 423 (543)
+..++|||+|| ++++|+++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.||++.++ |+.|.|.+++
T Consensus 15 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 45689999999 89999999999999999999999988 5899999999999999999999999999 9999999998
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 68
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=131.60 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
+..++|||+|| ++.+|+++|+++|++||+|.+|+|+. .+|||||+|.+.++|++|++.|+++.|+|+.|.|.+++++
T Consensus 23 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45679999999 89999999999999999999999998 4999999999999999999999999999999999999887
Q ss_pred ccc
Q 009126 426 SRL 428 (543)
Q Consensus 426 ~~~ 428 (543)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 69
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=142.82 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCC--CEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG--~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
..++|||+|| ++++||++|+++|++|| .|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 99999999999999999 9999999976 679999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9987653
No 70
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=125.93 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.||++.++|+.|.|.++++
T Consensus 7 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 356789999999 9999999999999999999999996 56999999999999999999999999999999999988
Q ss_pred ccc
Q 009126 425 KSR 427 (543)
Q Consensus 425 K~~ 427 (543)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 71
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=130.89 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++ .|+|+.|.|.
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 356789999999 999999999999999999999999985 5799999999999999999999998 8999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
++.++.+
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9987643
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.6e-16 Score=129.85 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEE-EEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeE---
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--- 416 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~-~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~--- 416 (543)
....++|||+|| ++++|+++|+++|++||+|. +|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999 89999999999999999999 9999986 56899999999999999999999999999999
Q ss_pred -EEEeeccccc
Q 009126 417 -VLVKPYREKS 426 (543)
Q Consensus 417 -V~Vk~Ak~K~ 426 (543)
|+|.++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997654
No 73
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-15 Score=132.79 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 37 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 356789999999 899999999999999999999999875 569999999999999999999999999999999999
Q ss_pred ecc
Q 009126 421 PYR 423 (543)
Q Consensus 421 ~Ak 423 (543)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 74
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.4e-16 Score=138.13 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CeEEcCeEEEEee
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKP 421 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~Gr~V~Vk~ 421 (543)
..++.++|||+|| ++++||++|+++|++||.|++|+|+. .||||||+|++.++|++|++.++ +..|+|+.|.|.+
T Consensus 27 ~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3466789999999 99999999999999999999999998 58999999999999999999886 4689999999999
Q ss_pred ccccccc
Q 009126 422 YREKSRL 428 (543)
Q Consensus 422 Ak~K~~~ 428 (543)
++++...
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9877543
No 75
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-16 Score=129.87 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
.+..++|||++| ++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|+++.++|++|.|.++++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 456789999999 89999999999999999999999997 699999999999999999999999999999999999988
Q ss_pred ccc
Q 009126 425 KSR 427 (543)
Q Consensus 425 K~~ 427 (543)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 76
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=133.36 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
...+..++|||+|| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44456889999999 899999999999999999999999886 5799999999999999999999999999999999
Q ss_pred Eeec
Q 009126 419 VKPY 422 (543)
Q Consensus 419 Vk~A 422 (543)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 77
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.8e-15 Score=128.87 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++|+++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .||+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 13 EPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45789999999 99999999999999997 999999986 46899999999999999999 8999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 988754
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.1e-16 Score=131.83 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|.|.++
T Consensus 7 ~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4579999999 899999999999999999999999975 45899999999999999999999999999999999999
Q ss_pred cccccchh
Q 009126 423 REKSRLVD 430 (543)
Q Consensus 423 k~K~~~~~ 430 (543)
.++.....
T Consensus 86 ~~~~~~~~ 93 (104)
T 1p1t_A 86 ASEKNKEE 93 (104)
T ss_dssp TCTTHHHH
T ss_pred CCccchhh
Confidence 88765443
No 79
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=6.4e-16 Score=134.03 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.+..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 23 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 889999999999999999999999875 568999999999999999999999999999999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 80
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=128.01 Aligned_cols=79 Identities=22% Similarity=0.382 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
.+...+||||+| ++++||++|+++|++||+|.+|+|+.+ +||||||+|.+.++|+++ .. ..+.++|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~-~~-~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSL-CG-EDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHH-TT-CEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHH-cC-CCcccCCEEEEEEEcCC
Confidence 456789999999 999999999999999999999999985 899999999999999843 22 24456799999999988
Q ss_pred ccc
Q 009126 425 KSR 427 (543)
Q Consensus 425 K~~ 427 (543)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 81
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=132.05 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEE--------EEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--------DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~--------~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~ 413 (543)
...++|||+|| ++++|+++|+++|++||.|. .|+|+.+ +++|||||+|.+.++|++|++.||++.|+
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999 89999999999999999999 6999886 57999999999999999999999999999
Q ss_pred CeEEEEeeccccccc
Q 009126 414 GARVLVKPYREKSRL 428 (543)
Q Consensus 414 Gr~V~Vk~Ak~K~~~ 428 (543)
|+.|.|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887653
No 82
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=134.19 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...++|||+|| ++++|+++|+++|++||.|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34679999999 999999999999999999999999986 57899999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 423 REKSRL 428 (543)
Q Consensus 423 k~K~~~ 428 (543)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 877643
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=9e-16 Score=137.57 Aligned_cols=81 Identities=27% Similarity=0.294 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 43 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456789999999 999999999999999999999999985 679999999999999999999999999999999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
+++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998764
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=130.72 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCC------CHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCe-EE
Q 009126 347 GSRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RV 417 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~------tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr-~V 417 (543)
..++|||+|| ++.+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|+..||+..++|+ .|
T Consensus 14 ~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4679999999 7888 78999999999999999999853 6899999999999999999999999999999 99
Q ss_pred EEeecccccc
Q 009126 418 LVKPYREKSR 427 (543)
Q Consensus 418 ~Vk~Ak~K~~ 427 (543)
.|.++.+..+
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999986644
No 85
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=1.1e-15 Score=132.55 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
+..++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ .++|||||+|.+.++|.+|++.||+..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45689999999 999999999999999999999999986 6799999999999999999999999999999999999986
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=2.6e-15 Score=132.19 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
......++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|.|
T Consensus 30 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999 999999999999999999999999986 57999999999999999999999999999999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
.++.++..
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987643
No 87
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.1e-15 Score=134.57 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345789999999 899999999999999999999999875 569999999999999999999999999999999999
Q ss_pred eccccccch
Q 009126 421 PYREKSRLV 429 (543)
Q Consensus 421 ~Ak~K~~~~ 429 (543)
++.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998876543
No 88
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=8.7e-16 Score=129.92 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE--------EEeecc----CCCceEEEEECCHHHHHHHHHhcCCeE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHF 411 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~--------VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~ 411 (543)
..+..++|||+|| ++++|+++|+++|++||.|.+ |+|+.+ +++|||||+|.+.++|++|++.||+..
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456789999999 999999999999999999999 999886 568999999999999999999999999
Q ss_pred EcCeEEEEeecc
Q 009126 412 VCGARVLVKPYR 423 (543)
Q Consensus 412 i~Gr~V~Vk~Ak 423 (543)
++|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 89
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.4e-16 Score=133.21 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++++|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|+|+.|.|.++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3579999999 999999999999999999999999975 57999999999999999999 89999999999999998
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
+++.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 8764
No 90
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=124.93 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...++|||+|| ++++|+++|+++|++| .|.+|+|+.+ +++|||||+|.+.++|++|++ ||+..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 45689999999 9999999999999999 9999999986 569999999999999999999 9999999999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
.++++
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87753
No 91
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-16 Score=133.23 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCC--eEEcCeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP--HFVCGARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng--~~i~Gr~V~Vk~A 422 (543)
.++.++|||+|| ++++||++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|++ ..++|++|.|.++
T Consensus 12 ~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 356789999999 89999999999999999999999988 699999999999999999998754 5699999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87653
No 92
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.8e-16 Score=129.23 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
..+..++|||+|| ++++|+++|+++|++||.|.+++++.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3455789999999 999999999999999999998887764 56899999999999999999999999999999999
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
.++..+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9987654
No 93
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=127.61 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
...++|||+|| ++++|+++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|+|+.|.|.
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45689999999 99999999999999999 999999975 45999999999999999999 999999999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
+++++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887543
No 94
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-15 Score=125.07 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcC--CCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~f--G~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
..+..++|||+|| ++.+|+++|+++|++| |.|.+|++ .||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKK----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEE----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEE----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999 8999999999999999 99999988 588999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
++++.+
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988754
No 95
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=124.79 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.||++.++|+.|.|.++++
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 356789999999 8999999999999999999999996 56999999999999999999999999999999999987
Q ss_pred ccc
Q 009126 425 KSR 427 (543)
Q Consensus 425 K~~ 427 (543)
+..
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.1e-16 Score=131.15 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhc-CCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeE-EcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSK-FGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-VCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~-fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~-i~Gr~V~Vk 420 (543)
...++|||+|| ++++|+++|+++|++ ||+|.+|+|+.+ +++|||||+|.+.++|++|++.|+++. ++|+.|.|.
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999 899999999999999 999999999986 579999999999999999999999999 999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9987754
No 97
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=5.4e-16 Score=124.36 Aligned_cols=71 Identities=30% Similarity=0.414 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
+|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++ ++++.++|++|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 6999999 999999999999999999999999875 579999999999999999998 8999999999999986
No 98
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.1e-15 Score=128.88 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.+..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356789999999 999999999999999999999999976 6799999999999999999999999999999999998
Q ss_pred cc
Q 009126 422 YR 423 (543)
Q Consensus 422 Ak 423 (543)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 99
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=130.95 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC-EEEEEee-cc----CCCceEEEEECCHHHHHHHHHhcC--CeEEcCeEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIP-CQ----QKRMFGFVTFVFAETVKQILAKGN--PHFVCGARV 417 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~-V~~VrI~-~d----~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~Gr~V 417 (543)
...++|||+|| ++++|+++|+++|++||. |.+|+|+ .+ ++||||||+|.+.++|++|++.|+ +..++|+.|
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45689999999 899999999999999999 9999998 43 689999999999999999999996 589999999
Q ss_pred EEeeccccccch
Q 009126 418 LVKPYREKSRLV 429 (543)
Q Consensus 418 ~Vk~Ak~K~~~~ 429 (543)
.|.+++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876543
No 100
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-15 Score=126.09 Aligned_cols=81 Identities=28% Similarity=0.369 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. ++.++|+.|.|.
T Consensus 12 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred cCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 345689999999 999999999999999999999999885 5689999999999999999995 789999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887653
No 101
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=131.11 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.|+|+.|.|.++
T Consensus 26 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3579999999 999999999999999999999999986 5799999999999999999999 999999999999999
Q ss_pred cccccc
Q 009126 423 REKSRL 428 (543)
Q Consensus 423 k~K~~~ 428 (543)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 988653
No 102
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.6e-15 Score=123.85 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|+ ++|+++|+++|++||+|.+|+|.. ++|||||+|.+.++|++|++.||++.|+|+.|.|.+++++
T Consensus 13 ~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 45689999997 789999999999999999999975 8999999999999999999999999999999999999887
Q ss_pred ccc
Q 009126 426 SRL 428 (543)
Q Consensus 426 ~~~ 428 (543)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 103
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.5e-15 Score=134.03 Aligned_cols=79 Identities=11% Similarity=0.200 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++.+|+++|+++|++||.|.+++++.+ .++|||||+|.+.++|.+|+..||+..++|+.|.|.
T Consensus 84 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 355779999999 999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred eccc
Q 009126 421 PYRE 424 (543)
Q Consensus 421 ~Ak~ 424 (543)
+|++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9864
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=2.3e-15 Score=137.25 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 68 ~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 68 EGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 999999999999999999999999986 6899999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
++++..
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987643
No 105
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=6.3e-16 Score=131.60 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
....++|||+|| ++++|+++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .||+..|+|+.|.|
T Consensus 16 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 355789999999 99999999999999999 999999875 46999999999999999999 89999999999999
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=131.61 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCE-EEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV-QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V-~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++++|+++|+++|++||.| .+|+|++| ++||||||+|.+.++|++|++. |++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 345689999999 9999999999999999999 89999986 6899999999999999999998 9999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
++.++..
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987653
No 107
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.1e-15 Score=136.74 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.....++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 35 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 899999999999999999999999886 46899999999999999999999999999999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
.+++++..
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987654
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.6e-15 Score=130.35 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..++|+.|.|.++++
T Consensus 28 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 356789999999 9999999999999999999999997 89999999999999999999999999999999999988
Q ss_pred ccc
Q 009126 425 KSR 427 (543)
Q Consensus 425 K~~ 427 (543)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 109
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=1.9e-15 Score=137.21 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|.+|++.||+..|+|+.|.|.+++
T Consensus 69 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3456789999999 999999999999999999999999986 79999999999999999999999999999999999998
Q ss_pred ccc
Q 009126 424 EKS 426 (543)
Q Consensus 424 ~K~ 426 (543)
++.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 110
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=7.6e-16 Score=130.53 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSR 427 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~~ 427 (543)
++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|++.|++..++|+.|.|.+++++..
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 48999999 889999999999999999999999987 799999999999999999999999999999999999988763
No 111
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=6.9e-16 Score=137.69 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE--EEeecc----CCCceEEEEECCHHHHHHHHHhcCCe----EEcCe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCGA 415 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~--VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~----~i~Gr 415 (543)
...++|||+|| ++++||++|+++|++||.|.. |+|++| ++||||||+|.+. +|.+|+..||+. .++|+
T Consensus 21 ~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 55789999999 999999999999999999977 999986 5899999999999 999999999999 99999
Q ss_pred EEEEeecccccc
Q 009126 416 RVLVKPYREKSR 427 (543)
Q Consensus 416 ~V~Vk~Ak~K~~ 427 (543)
.|.|++++++..
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 112
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.1e-15 Score=128.93 Aligned_cols=78 Identities=17% Similarity=0.421 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~-~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.+..++|||+|| ++ .+|+++|+++|++||+|.+|+| +||||||+|.+.++|++|++.||+..++|++|.|.+++
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEE----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 356789999999 87 9999999999999999999999 48999999999999999999999999999999999998
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
++..
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 113
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=128.10 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE-EEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~-VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
....+|||+|| ++++|+++|+++|++||.|.+ |+|+.+ +++|||||+|.+.++|++|++. +++.++||.|.|.+
T Consensus 13 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45689999999 999999999999999999998 889875 7899999999999999999999 99999999999998
Q ss_pred cccc
Q 009126 422 YREK 425 (543)
Q Consensus 422 Ak~K 425 (543)
+.++
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 114
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=126.21 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC-EEEEEeeccCCCceEEEEECCHHHHHHHHHhcCC-eEEcCeEEEEeecc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPYR 423 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~-V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng-~~i~Gr~V~Vk~Ak 423 (543)
+..++|||+|| ++++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ +.++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 6 SGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 56789999999 999999999999999999 6666663 699999999999999999999999 99999999999998
Q ss_pred ccccc
Q 009126 424 EKSRL 428 (543)
Q Consensus 424 ~K~~~ 428 (543)
++...
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 87543
No 115
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=131.42 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
..++|||+|| ++++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..++|+.|.|.++...
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3569999999 89999999999999999999999987 8999999999999999999999999999999999998764
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-16 Score=127.19 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+..++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.++|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999 999999999999999999999999885 5699999999999999999999999999999998877
Q ss_pred cc
Q 009126 422 YR 423 (543)
Q Consensus 422 Ak 423 (543)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 117
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=9.5e-16 Score=128.12 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.+..++|||+|| ++++|+++|+++|++||.|.+++++.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345689999999 999999999999999999998888774 578999999999999999999999999999999999
Q ss_pred eccc
Q 009126 421 PYRE 424 (543)
Q Consensus 421 ~Ak~ 424 (543)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=124.34 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=66.0
Q ss_pred CCeEEEcCCCCCCC------CHHHHHHHhhcCCCEEEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCe-EEE
Q 009126 348 SRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVL 418 (543)
Q Consensus 348 ~rtIfVg~L~~~~~------tEedLr~~Fs~fG~V~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr-~V~ 418 (543)
.++|||+|| ++.+ |+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..++|+ .|+
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 369999999 7888 77999999999999999999853 7899999999999999999999999999999 887
Q ss_pred Ee
Q 009126 419 VK 420 (543)
Q Consensus 419 Vk 420 (543)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 119
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.5e-15 Score=130.97 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|+|+.|.|.+++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 579999999 999999999999999999999999875 67999999999999999999 899999999999999988
Q ss_pred ccc
Q 009126 424 EKS 426 (543)
Q Consensus 424 ~K~ 426 (543)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 120
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=125.59 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.....++|||+|| ++++|+++|+++|++||.| +|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 3456789999999 9999999999999999987 45553 689999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
+++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9988754
No 121
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=9.8e-16 Score=123.02 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=68.2
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.++ +.++|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 899999999999999999999999885 569999999999999999999998 9999999999987
No 122
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=4.2e-16 Score=129.23 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.+ |.+|+..||+..++|+.|.|++|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999 999999999999999999999999985 56999999999999 9999999999999999999999987
Q ss_pred ccc
Q 009126 425 KSR 427 (543)
Q Consensus 425 K~~ 427 (543)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 123
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=129.33 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCE----EEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V----~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.+..++|||+|| ++++|+++|+++|++||.| ..+++..++++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 356789999999 8999999999999999999 66777766889999999999999999999999999999999999
Q ss_pred eccccccc
Q 009126 421 PYREKSRL 428 (543)
Q Consensus 421 ~Ak~K~~~ 428 (543)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887543
No 124
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=134.63 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CeEEcCeEEEEee
Q 009126 345 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKP 421 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~-~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~Gr~V~Vk~ 421 (543)
.++.++|||+|| +++ +||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.|+ +..|+||+|.|.+
T Consensus 22 ~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 356789999999 887 99999999999999999999987 89999999999999999999874 5679999999999
Q ss_pred ccccccc
Q 009126 422 YREKSRL 428 (543)
Q Consensus 422 Ak~K~~~ 428 (543)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876543
No 125
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=131.96 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=72.5
Q ss_pred CCCCeEEE--cCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE-----cCeEEE
Q 009126 346 AGSRQIYL--TFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV-----CGARVL 418 (543)
Q Consensus 346 ~~~rtIfV--g~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i-----~Gr~V~ 418 (543)
.++++||| ||| ++++||++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++.||++.+ .|+.|.
T Consensus 23 ~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 45789999 889 99999999999999999999999987 699999999999999999999999999 799999
Q ss_pred Eeecccccc
Q 009126 419 VKPYREKSR 427 (543)
Q Consensus 419 Vk~Ak~K~~ 427 (543)
|.+++..+.
T Consensus 100 v~~a~~~p~ 108 (114)
T 2cq2_A 100 LNFVEKVQW 108 (114)
T ss_dssp EEEESCCCC
T ss_pred EEecccCcc
Confidence 999876543
No 126
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=6.9e-15 Score=136.44 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++. +++.++|+.|.|.+
T Consensus 102 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 45689999999 999999999999999999999999975 5699999999999999999998 89999999999999
Q ss_pred ccccccchhh
Q 009126 422 YREKSRLVDR 431 (543)
Q Consensus 422 Ak~K~~~~~~ 431 (543)
+.++.+....
T Consensus 180 a~~k~~~~~~ 189 (196)
T 1l3k_A 180 ALSKQEMASA 189 (196)
T ss_dssp CC--------
T ss_pred cCChhHhccc
Confidence 9988765433
No 127
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2.1e-15 Score=132.75 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC---EEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~---V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
...++|||+|| ++++|+++|+++|++||. |.+|+|+.+ ++||||||+|.+.++|++|++ +|++.|+||.|.|
T Consensus 15 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 44679999999 999999999999999999 899999986 679999999999999999999 8999999999999
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
.++.++.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 128
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=4.6e-15 Score=137.30 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++.+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999 889999999999999999999999975 4689999999999999999999999999999999999
Q ss_pred ccccccch
Q 009126 422 YREKSRLV 429 (543)
Q Consensus 422 Ak~K~~~~ 429 (543)
+.++....
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 98876544
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=6.3e-15 Score=127.11 Aligned_cols=76 Identities=16% Similarity=0.323 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 346 AGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~-~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
+..++|||+|| +++ +|+++|+++|++||+|.+|+| ++|||||+|.+.++|++|++.||++.|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44689999999 888 999999999999999999999 689999999999999999999999999999999999985
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 130
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7e-15 Score=123.24 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEE-eeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~Vr-I~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|++|++.||+..|+|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34689999999 99999999999999999999995 88887777799999999999999999999999999999999988
Q ss_pred c
Q 009126 425 K 425 (543)
Q Consensus 425 K 425 (543)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 7
No 131
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.8e-15 Score=129.38 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
..+|||+|| ++++||++|+++|++| .|.+|+|+.| ++||||||+|.+.++|++|+ .+|++.|+||.|.|..+.+
T Consensus 16 ~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 469999999 9999999999999999 8999999986 68999999999999999999 5799999999999999876
Q ss_pred c
Q 009126 425 K 425 (543)
Q Consensus 425 K 425 (543)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=2.1e-15 Score=136.09 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 45 ~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999 999999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred ccccccc
Q 009126 422 YREKSRL 428 (543)
Q Consensus 422 Ak~K~~~ 428 (543)
++++...
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=2.8e-15 Score=136.43 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC---EEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~---V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
....+|||+|| ++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ +|++.|+||.|.|
T Consensus 42 ~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45679999999 999999999999999999 899999986 679999999999999999999 8999999999999
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
.++.++.
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9986553
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=4.9e-15 Score=124.19 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|| ++.+|+++|+++|++||.|..+ ...++++|||||+|.+.++|++|++.|++..++|+.|.|.++.++
T Consensus 14 ~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45689999999 9999999999999999999877 333478999999999999999999999999999999999999887
Q ss_pred cc
Q 009126 426 SR 427 (543)
Q Consensus 426 ~~ 427 (543)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-15 Score=129.12 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++|+++|+++|++||.|.. .++.+ ++||||||+|.+.++|++|++ ||++.|+|+.|.|.+
T Consensus 15 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNL-NPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 45679999999 999999999999999999988 55554 789999999999999999999 999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 988754
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2e-15 Score=120.86 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
||||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.++|+.|.|++|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999 999999999999999999999999875 5799999999999999999997 899999999999875
No 137
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=9e-15 Score=121.45 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K~ 426 (543)
..++|||+|| ++++|+++|+++|++| +|.+|+|. ++||||||+|.+.++|++|++.||+..++|++|+|.++..+.
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4579999999 9999999999999999 99999996 599999999999999999999999999999999999987654
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-15 Score=129.87 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC---EEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~---V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
....+|||+|| ++++|+++|+++|++||. |.+|+|+.+ ++||||||+|.+.++|++|++ ++++.++||.|.|
T Consensus 9 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45679999999 999999999999999998 999999986 689999999999999999999 8999999999999
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987654
No 139
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.4e-15 Score=126.69 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEE--------cC
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV--------CG 414 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i--------~G 414 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..| .+
T Consensus 23 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999 899999999999999999999999986 5689999999999999999999999999 57
Q ss_pred eEEEEeeccccc
Q 009126 415 ARVLVKPYREKS 426 (543)
Q Consensus 415 r~V~Vk~Ak~K~ 426 (543)
+.|.|+++.++.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999988653
No 140
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=121.82 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|| ++++|+++|+++|++||+|.+|.+-....+ ||||+|.+.++|++|++ ||++.|+|+.|.|.++.++
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 34679999999 999999999999999999999822222233 99999999999999999 9999999999999998766
Q ss_pred cc
Q 009126 426 SR 427 (543)
Q Consensus 426 ~~ 427 (543)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 141
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=3.8e-15 Score=145.97 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCC--CEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG--~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
..++|||+|| ++++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4569999999 99999999999999999 9999999986 579999999999999999999999999999999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
+++++.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 998764
No 142
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.3e-15 Score=121.62 Aligned_cols=78 Identities=27% Similarity=0.456 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. ...++|++|.|.++.++
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 34689999999 999999999999999999999999875 799999999999999865433 46679999999999887
Q ss_pred cc
Q 009126 426 SR 427 (543)
Q Consensus 426 ~~ 427 (543)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 143
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-15 Score=133.19 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
....+|||+|| ++++|+++|+++|++||.|.++.++.+ +++|||||+|.+.++|++||+ ||++.|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 45679999999 999999999999999999988555442 679999999999999999999 899999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
+.++..
T Consensus 101 a~~~~~ 106 (124)
T 1wel_A 101 ITKKGM 106 (124)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987653
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=132.58 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEE--------Eeec-cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV--------RIPC-QQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~V--------rI~~-d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~ 416 (543)
...++|||+|| ++++|+++|+++|++||.|..| ++.. ++++|||||+|.+.++|.+|+..||+..|+|+.
T Consensus 43 ~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45689999999 9999999999999999999764 4333 478999999999999999999999999999999
Q ss_pred EEEeeccccccch
Q 009126 417 VLVKPYREKSRLV 429 (543)
Q Consensus 417 V~Vk~Ak~K~~~~ 429 (543)
|.|.+++++....
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998765433
No 145
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-15 Score=127.22 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
....++|||+|| ++++||++|+++|++||.| +|+|++| ++||||||+|.+.++|++|++ +|++.|+||.|.|.+
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345679999999 9999999999999999954 9999986 679999999999999999995 699999999999999
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.6e-15 Score=125.88 Aligned_cols=80 Identities=20% Similarity=0.429 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
..++|||+|| ++++|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++ +++.++|+.|.|.++.
T Consensus 8 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4579999999 899999999999999999999999986 578999999999999999999 8999999999999998
Q ss_pred ccccch
Q 009126 424 EKSRLV 429 (543)
Q Consensus 424 ~K~~~~ 429 (543)
++....
T Consensus 85 ~~~~~~ 90 (102)
T 2xs2_A 85 RKQNLS 90 (102)
T ss_dssp ECC---
T ss_pred cCcchh
Confidence 876543
No 147
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=1.5e-14 Score=136.17 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcC--eEEEEeecccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREK 425 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--r~V~Vk~Ak~K 425 (543)
..+|||+|| ++.+|+++|+++|++||+|++|+|..++++|||||+|.+.++|++|++.||+..|.| ++|+|.+++++
T Consensus 46 vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 358999999 999999999999999999999999876678999999999999999999999999966 99999999987
Q ss_pred c
Q 009126 426 S 426 (543)
Q Consensus 426 ~ 426 (543)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 148
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=2.4e-14 Score=137.75 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCC-CCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 346 AGSRQIYLTFPAE-STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 346 ~~~rtIfVg~L~~-~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
++..+|||+|| + +.+|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|++|++.||++.+.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 56789999999 6 89999999999999999999999985 589999999999999999999999999999999999875
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=5.4e-15 Score=139.17 Aligned_cols=81 Identities=15% Similarity=0.312 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++|+++|+++|++||.|++|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 34679999999 899999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
+.++..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 988743
No 150
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=121.27 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
.....++|||+|| ++++|+++|+++|++|+ +|+++.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGL-SEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECC-CTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999 99999999999999886 4555554 56899999999999999999999999999999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99998764
No 151
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2.8e-14 Score=117.04 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcC----C-------CEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCe
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~f----G-------~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr 415 (543)
..++|||+|| ++++|+++|+++|++| | +|.+++++. .||||||+|.+.++|++|+ .||+..++|+
T Consensus 5 ~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 4679999999 9999999999999999 8 999999987 6999999999999999999 9999999999
Q ss_pred EEEEee
Q 009126 416 RVLVKP 421 (543)
Q Consensus 416 ~V~Vk~ 421 (543)
.|+|++
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 152
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=9.4e-16 Score=133.50 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEE--------EEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~--------VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~ 413 (543)
+..++|||+|| ++++|+++|+++|++||.|.+ |+|+.+ +++|||||+|.+.++|++|++.||+..|+
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45689999999 899999999999999999999 888875 57999999999999999999999999999
Q ss_pred CeEEEEeecccccc
Q 009126 414 GARVLVKPYREKSR 427 (543)
Q Consensus 414 Gr~V~Vk~Ak~K~~ 427 (543)
|+.|.|.+++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999988754
No 153
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=1.8e-14 Score=127.83 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|+ ++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..++|+.|.|.+++++
T Consensus 37 ~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 45789999997 589999999999999999999985 8999999999999999999999999999999999999887
Q ss_pred ccc
Q 009126 426 SRL 428 (543)
Q Consensus 426 ~~~ 428 (543)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=3.3e-14 Score=136.01 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
.+.+||||||| ++++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+|+..+.|+.++|.+
T Consensus 13 ~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35679999999 999999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876543
No 155
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=6e-14 Score=128.30 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|| ++++|+++|+++|++||.|..+ ...++++|||||+|.+.++|.+|++.||+..++|+.|.|.++.+|
T Consensus 97 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 45689999999 8999999999999999999887 333478999999999999999999999999999999999999887
Q ss_pred c
Q 009126 426 S 426 (543)
Q Consensus 426 ~ 426 (543)
+
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=4.6e-14 Score=127.49 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
+.++|||+|| ++++|+++|+++|++||+|.+|+++.+ +++|||||+|.+.++|++|++.+++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4679999999 899999999999999999999999875 47899999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87653
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.50 E-value=5.9e-14 Score=126.11 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.++|||+|| ++++|+++|+++|++||+|.+|+++.+ +++|||||+|.+.++|++|++.+++..++|+.|.|.++.
T Consensus 2 ~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999 899999999999999999999999885 467999999999999999999999999999999999998
Q ss_pred cccc
Q 009126 424 EKSR 427 (543)
Q Consensus 424 ~K~~ 427 (543)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7643
No 158
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=129.99 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCE----EEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V----~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
...+|||+|| ++++||++|+++|++||+| .+|+|+.| ++||||||+|.+.++|++|++. |++.++||.|.|
T Consensus 22 ~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 3569999999 9999999999999999986 68999875 6799999999999999999998 999999999999
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986553
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=1.9e-14 Score=125.87 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeE-----EEEee
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR-----VLVKP 421 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~-----V~Vk~ 421 (543)
...+|||+|| ++++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++|++.||+..|+|++ |+|..
T Consensus 15 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 3579999999 899999999999999999999999875 99999999999999999999999999998 77777
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
+.++.
T Consensus 91 ~~~~~ 95 (115)
T 3beg_B 91 DGPRS 95 (115)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 66543
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.7e-14 Score=126.63 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=72.7
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
|+|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++.++
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 68999999 899999999999999999999999886 57899999999999999999999999999999999998766
Q ss_pred c
Q 009126 426 S 426 (543)
Q Consensus 426 ~ 426 (543)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=8.9e-14 Score=126.19 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCce-EEEEECCHHHHHHHHHhcCCeEEcC--eEEEEeeccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYRE 424 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGF-GFVtF~~~e~A~~Al~~mng~~i~G--r~V~Vk~Ak~ 424 (543)
.-+|||+|| ++.+|+++|+++|++||+|.+|+|+. +.+|| |||+|.+.++|++|++.|||..|.| +.|+|.++++
T Consensus 28 VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 28 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred eEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 348999999 99999999999999999999998876 45788 9999999999999999999999998 9999999987
Q ss_pred cc
Q 009126 425 KS 426 (543)
Q Consensus 425 K~ 426 (543)
+.
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=5e-14 Score=132.90 Aligned_cols=83 Identities=10% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
.....++|||+|| ++.+++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455789999999 999999999999999999999999985 679999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9976543
No 163
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=1e-14 Score=133.22 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
...++|||+|| ++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|+ .+|++.|+||.|.|..+
T Consensus 44 ~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34679999999 99999999999999999 779999986 68999999999999999999 77999999999999998
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
.++..
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87654
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=9.2e-14 Score=124.90 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCce-EEEEECCHHHHHHHHHhcCCeEEcC--eEEEEeeccccc
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREKS 426 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGF-GFVtF~~~e~A~~Al~~mng~~i~G--r~V~Vk~Ak~K~ 426 (543)
.|||+|| ++.+|+++|+++|++||.|.+|+|+. ..|| |||+|.+.++|..|++.|||..|.| +.|+|.+|+++.
T Consensus 27 ~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999 99999999999999999999999976 3597 9999999999999999999999988 699999998875
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.48 E-value=3.7e-14 Score=128.23 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3569999999 899999999999999999999999875 579999999999999999998 7999999999999999
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
.+|.
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8873
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=8.5e-14 Score=126.29 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEc---CeEEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARVLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~---Gr~V~V 419 (543)
...++|||+|| ++++|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..+. |+.|.|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 35679999999 999999999999999999999999886 56999999999999999999999998776 499999
Q ss_pred eecc
Q 009126 420 KPYR 423 (543)
Q Consensus 420 k~Ak 423 (543)
++|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 167
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.48 E-value=3.3e-14 Score=128.04 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEE--EEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--DVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~--~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
...++|||+|| ++++||++|+++|++| .|+ +|+|++| ++||||||+|.+.++|++|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 45679999999 9999999999999999 677 9999986 6899999999999999999997 7799999999999
Q ss_pred ecccc
Q 009126 421 PYREK 425 (543)
Q Consensus 421 ~Ak~K 425 (543)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=1e-13 Score=125.15 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcC--eEEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--r~V~V 419 (543)
...++|||+|| +..+|+++|+++|++||.|.+|+++.+ +++|||||+|.+.++|.+|++.||+..++| ++|.|
T Consensus 87 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 45689999999 889999999999999999999999885 468999999999999999999999999988 99999
Q ss_pred eec
Q 009126 420 KPY 422 (543)
Q Consensus 420 k~A 422 (543)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.46 E-value=8.2e-14 Score=125.16 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeE--EEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--VLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~--V~V 419 (543)
...++|||+|| ++.+|+++|+++|++||.|.+++++.+ +++|||||+|.+.++|.+|++.||+..++|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 45679999999 889999999999999999999999875 46899999999999999999999999999975 888
Q ss_pred eec
Q 009126 420 KPY 422 (543)
Q Consensus 420 k~A 422 (543)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=119.49 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~ 418 (543)
...++|||+|| ++++|+++|+++|++||+|. +.++.+ ++||||||+|.+.++|++|++.| +.++|+.+.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 45689999999 99999999999999999999 888774 56999999999999999999998 468999888
Q ss_pred Eeecccc
Q 009126 419 VKPYREK 425 (543)
Q Consensus 419 Vk~Ak~K 425 (543)
|..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 8866543
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=1e-13 Score=134.06 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 342 GGIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 342 g~~~~~~rtIfVg~L~~~-~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
+...+..++|||+|| ++ ++|+++|+++|++||+|.+|+|+.++ +|||||+|.+.++|++|++.+|+..++|+.|.|.
T Consensus 28 ~~~~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 28 GLAGAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GGGCCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344567899999999 77 99999999999999999999999865 8999999999999999999999999999999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
+++++.
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 998653
No 172
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.4e-13 Score=127.83 Aligned_cols=81 Identities=14% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999 889999999999999999999999975 4599999999999999999999999999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
++++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988754
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=3.6e-13 Score=133.52 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEEEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEE
Q 009126 344 IVAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (543)
Q Consensus 344 ~~~~~rtIfVg~L~~~~-~tEedLr~~Fs~fG~V~~VrI~~d-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V 417 (543)
.....++|||+|| ++. +|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+ .||+..|+|+.|
T Consensus 206 ~~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 206 ATLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp -CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred cCCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 3456789999999 888 999999999999999999999885 45999999999999999999 999999999999
Q ss_pred EEeeccccc
Q 009126 418 LVKPYREKS 426 (543)
Q Consensus 418 ~Vk~Ak~K~ 426 (543)
.|.++++|+
T Consensus 284 ~V~~a~~k~ 292 (292)
T 2ghp_A 284 SVSLADKKP 292 (292)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999999874
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=1.6e-13 Score=127.12 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.++|+.|.|.+
T Consensus 11 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45789999999 999999999999999999999999986 4689999999999999999988 99999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
+.++..
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 877643
No 175
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=2e-13 Score=145.85 Aligned_cols=82 Identities=16% Similarity=0.339 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
....++|||+|| ++.+|+++|+++|++||+|+.|.|+.+ +++|||||+|.+.++|.+||+.||++.|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999 999999999999999999999999975 579999999999999999999999999999999999
Q ss_pred ecccccc
Q 009126 421 PYREKSR 427 (543)
Q Consensus 421 ~Ak~K~~ 427 (543)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987643
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=1.2e-13 Score=125.40 Aligned_cols=76 Identities=16% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|++|.|++
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 44789999999 889999999999999999999999886 4689999999999999999999999999999999998
Q ss_pred c
Q 009126 422 Y 422 (543)
Q Consensus 422 A 422 (543)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=2.7e-13 Score=117.91 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCC----CCCHHHHHHHhhcCCCEEEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeE
Q 009126 346 AGSRQIYLTFPAES----TFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (543)
Q Consensus 346 ~~~rtIfVg~L~~~----~~tEedLr~~Fs~fG~V~~VrI~~d-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~ 416 (543)
..+++|+|.|+.+. +.++++|++.|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 46789999999321 2478999999999999999999875 56999999999999999999999999999999
Q ss_pred EEEeeccc
Q 009126 417 VLVKPYRE 424 (543)
Q Consensus 417 V~Vk~Ak~ 424 (543)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 178
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.8e-13 Score=116.29 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCC----------CHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 345 VAGSRQIYLTFPAESTF----------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~----------tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
...+++|+|.||..... ++++|+++|++||+|.+|.|+...++|||||+|.+.++|++|+..||+..++|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35688999999922211 26899999999999999977543689999999999999999999999999999
Q ss_pred eEEEEeecccccc
Q 009126 415 ARVLVKPYREKSR 427 (543)
Q Consensus 415 r~V~Vk~Ak~K~~ 427 (543)
|.|.|.++.++..
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999988754
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=3.3e-13 Score=133.18 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEEEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr----~~Fs~fG~V~~VrI~~d-~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
....++|||+|| ++++|+++|+ ++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 6 ~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 356789999999 9999999977 89999999999999874 78999999999999999999999999999999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
.+++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99977653
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.44 E-value=2.9e-13 Score=133.65 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCC-CHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTF-TEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~-tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
...++|||+|| ++++ |+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..||+..++|+.|.|.+
T Consensus 182 ~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 55789999999 8884 99999999999999999999885 5699999999999999999999999999999999999
Q ss_pred ccccccchh
Q 009126 422 YREKSRLVD 430 (543)
Q Consensus 422 Ak~K~~~~~ 430 (543)
+.++.....
T Consensus 261 a~~~~~~~~ 269 (284)
T 3smz_A 261 CAPGPPGRS 269 (284)
T ss_dssp CCSSSCHHH
T ss_pred ecCCCcccc
Confidence 998876443
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.43 E-value=2.7e-13 Score=127.48 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..|+|+.|.|.++.
T Consensus 28 ~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 569999999 999999999999999999999999875 589999999999999999999999999999999999987
Q ss_pred ccccc
Q 009126 424 EKSRL 428 (543)
Q Consensus 424 ~K~~~ 428 (543)
.+...
T Consensus 107 ~~~~~ 111 (216)
T 2qfj_A 107 NIGQA 111 (216)
T ss_dssp CCGGG
T ss_pred Ccccc
Confidence 76543
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=3.1e-13 Score=129.08 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+ ++.++|+.|.|.++++
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 479999999 899999999999999999999999985 67999999999999999999885 4699999999998765
Q ss_pred c
Q 009126 425 K 425 (543)
Q Consensus 425 K 425 (543)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=116.42 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=68.9
Q ss_pred CCCCe-EEEcCCCCCCCCHHH----HHHHhhcC-CCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 346 AGSRQ-IYLTFPAESTFTEQD----VSNYFSKF-GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 346 ~~~rt-IfVg~L~~~~~tEed----Lr~~Fs~f-G~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
+++.| |||+|| ++++++++ |+++|++| |+|.+| ..|||||+|.+.++|++|++.|++..+.||.|+|
T Consensus 6 ~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 44555 999999 99999988 55899999 599998 2499999999999999999999999999999999
Q ss_pred eeccccccch
Q 009126 420 KPYREKSRLV 429 (543)
Q Consensus 420 k~Ak~K~~~~ 429 (543)
.+|+.+.+..
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9999887654
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=2.9e-13 Score=122.73 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCeEEc---CeEE
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARV 417 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d------~sRGFGFVtF~~~e~A~~Al~~mng~~i~---Gr~V 417 (543)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+. ++.+
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4679999999 999999999999999999999999985 47899999999999999999999998776 6788
Q ss_pred EEeeccccc
Q 009126 418 LVKPYREKS 426 (543)
Q Consensus 418 ~Vk~Ak~K~ 426 (543)
.|.++..+.
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888876554
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=7.4e-13 Score=130.66 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEc-CeEEEEeecc
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPYR 423 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~-Gr~V~Vk~Ak 423 (543)
.+..++|||+|| ++.+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.||+..|+ |+.|+|.+++
T Consensus 204 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 456789999999 8999999999999999999999999754 699999999999999999999999999 9999999986
Q ss_pred c
Q 009126 424 E 424 (543)
Q Consensus 424 ~ 424 (543)
.
T Consensus 282 k 282 (282)
T 3pgw_A 282 K 282 (282)
T ss_pred C
Confidence 3
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=4e-13 Score=121.43 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. ++.++|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3579999999 999999999999999999999999985 6799999999999999999996 58999999999998
Q ss_pred cccc
Q 009126 423 REKS 426 (543)
Q Consensus 423 k~K~ 426 (543)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7653
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.40 E-value=2.3e-13 Score=127.28 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 347 GSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 347 ~~rtIfVg~L~~~-~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
+.++|||+|| ++ ++|+++|+++|++||+|.+|+|+.++ +|||||+|.+.++|++|++.+|+..++|+.|.|.++..+
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 3579999999 77 99999999999999999999999865 899999999999999999999999999999999999866
Q ss_pred c
Q 009126 426 S 426 (543)
Q Consensus 426 ~ 426 (543)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=5.1e-13 Score=131.77 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhc-CCeEEc---CeEEEE
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKG-NPHFVC---GARVLV 419 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~---Gr~V~V 419 (543)
..++|||+|| ++.+|+++|+++|++||.|.+|+|+.| +++|||||+|.+.++|.+|+..| ++..+. |+.|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3569999999 899999999999999999999999986 67999999999999999999999 566665 999999
Q ss_pred eeccccc
Q 009126 420 KPYREKS 426 (543)
Q Consensus 420 k~Ak~K~ 426 (543)
.++.++.
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9988754
No 189
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=8.3e-13 Score=120.05 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=65.8
Q ss_pred CeEEEcCC---CCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECC----HHH----HHHHHH--hcCCeE
Q 009126 349 RQIYLTFP---AESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVF----AET----VKQILA--KGNPHF 411 (543)
Q Consensus 349 rtIfVg~L---~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~----~e~----A~~Al~--~mng~~ 411 (543)
.+||||+| .++.++|++|+++|++||+|.+|+++.| +++|||||+|.+ +++ |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 4568999999999999999999999997 789999999996 333 888988 789999
Q ss_pred EcCeEEEEeecc
Q 009126 412 VCGARVLVKPYR 423 (543)
Q Consensus 412 i~Gr~V~Vk~Ak 423 (543)
|+||.|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999743
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.35 E-value=2.4e-12 Score=126.95 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecccc
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~K 425 (543)
...++|||+|| ++++|+++|+++|++||.|.+|+|.. ++|||||+|.+.++|.+|+..+|+..++|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 45679999999 99999999999999999999999987 7999999999999999999999999999999999998764
Q ss_pred c
Q 009126 426 S 426 (543)
Q Consensus 426 ~ 426 (543)
.
T Consensus 97 ~ 97 (261)
T 3sde_A 97 A 97 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=2.2e-12 Score=119.69 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcC----C-------CEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~f----G-------~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
...++|||+|| ++++|+++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .+|++.++|
T Consensus 2 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 34689999999 9999999999999999 6 788888765 8999999999999999999 899999999
Q ss_pred eEEEEeeccccc
Q 009126 415 ARVLVKPYREKS 426 (543)
Q Consensus 415 r~V~Vk~Ak~K~ 426 (543)
+.|.|.++.++.
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999987764
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.34 E-value=9.7e-13 Score=120.24 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec---cCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~---d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
....++|||+|| ++++|+++|+++|++||.|..+.|.. +++||||||+|.+.++|++|++ ||+..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 355789999999 99999999999999999877632221 2689999999999999999995 899999999999999
Q ss_pred cccccc
Q 009126 422 YREKSR 427 (543)
Q Consensus 422 Ak~K~~ 427 (543)
+.++..
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 987653
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.34 E-value=2.6e-12 Score=116.59 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcC----C-------CEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCe
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~f----G-------~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr 415 (543)
..++|||+|| ++++|+++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .+|++.++|+
T Consensus 3 ~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 4579999999 9999999999999999 7 899998876 7999999999999999999 8999999999
Q ss_pred EEEEeecccc
Q 009126 416 RVLVKPYREK 425 (543)
Q Consensus 416 ~V~Vk~Ak~K 425 (543)
.|.|.++...
T Consensus 79 ~i~v~~~~~~ 88 (172)
T 2g4b_A 79 SLKIRRPHDY 88 (172)
T ss_dssp ECEEECCSSC
T ss_pred eeeecCCccc
Confidence 9999987654
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=2.5e-12 Score=120.25 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEc-CeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG-~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~-Gr~V~Vk~A 422 (543)
.++.++|||+|| ++.+|+++|+++|++|| .|.+|+|+.+ .+|||||+|.+.++|.+|++.||+..++ |+.|.|.++
T Consensus 117 ~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 117 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 356889999999 88999999999999999 9999999653 5899999999999999999999999999 999999998
Q ss_pred ccc
Q 009126 423 REK 425 (543)
Q Consensus 423 k~K 425 (543)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.31 E-value=3.5e-12 Score=123.25 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEc-CeEEEEeec
Q 009126 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEedLr~~Fs~fG-~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~-Gr~V~Vk~A 422 (543)
.+..++|||+|| ++.+|+++|+++|++|| +|.+|+|+. .++|||||+|.+.++|.+|++.||+..++ |+.|.|.++
T Consensus 148 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 148 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 345789999999 88999999999999999 999999955 26899999999999999999999999999 999999999
Q ss_pred ccc
Q 009126 423 REK 425 (543)
Q Consensus 423 k~K 425 (543)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=9.2e-13 Score=114.10 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=60.3
Q ss_pred EcCCCCCCCCHHHHHHHh------------hcCCCEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEE
Q 009126 353 LTFPAESTFTEQDVSNYF------------SKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (543)
Q Consensus 353 Vg~L~~~~~tEedLr~~F------------s~fG~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V 417 (543)
+++| ++.+++++|+++| ++||+|.+|+|+.+ ++||||||+|.+.++|++|+..|||..++||.|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 4556 5667777777666 99999999999986 579999999999999999999999999999999
Q ss_pred EEeec
Q 009126 418 LVKPY 422 (543)
Q Consensus 418 ~Vk~A 422 (543)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=6e-12 Score=109.25 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCC-CC--------CHHHHHHHhhcCCCEEEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCe
Q 009126 346 AGSRQIYLTFPAES-TF--------TEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPH 410 (543)
Q Consensus 346 ~~~rtIfVg~L~~~-~~--------tEedLr~~Fs~fG~V~~VrI~~d------~sRGFGFVtF~~~e~A~~Al~~mng~ 410 (543)
.+++.|.|.|+-+. .+ .+++|++.|++||+|++|+|+.+ +++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788899988332 22 34799999999999999999986 36899999999999999999999999
Q ss_pred EEcCeEEEEeecccc
Q 009126 411 FVCGARVLVKPYREK 425 (543)
Q Consensus 411 ~i~Gr~V~Vk~Ak~K 425 (543)
.++||.|.|.++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998654
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.29 E-value=7.3e-12 Score=123.65 Aligned_cols=80 Identities=10% Similarity=0.143 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEee
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d----~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~ 421 (543)
+..++|||+|| ++++|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.+++..++|+.|.|.+
T Consensus 93 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35579999999 999999999999999999999999875 5789999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 422 YREKS 426 (543)
Q Consensus 422 Ak~K~ 426 (543)
+.++.
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 98764
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-11 Score=106.07 Aligned_cols=79 Identities=10% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCC------CCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEE
Q 009126 346 AGSRQIYLTFPAE------STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (543)
Q Consensus 346 ~~~rtIfVg~L~~------~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~V 419 (543)
...++|-|..... ..+||++|+++|++||+|.+|+|+. ++||||||+|.+.++|+.|++.+++ +.|+.|.|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 3355666665522 4589999999999999999999984 6899999999999999999998544 68999999
Q ss_pred eecccccc
Q 009126 420 KPYREKSR 427 (543)
Q Consensus 420 k~Ak~K~~ 427 (543)
.|++++..
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99988754
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.26 E-value=4.8e-12 Score=121.64 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCE--EEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCeEEcCe----EE
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPV--QDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA----RV 417 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V--~~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr----~V 417 (543)
++.++|||+|| ++++|+++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+|+..||+..|+|+ .+
T Consensus 121 ~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 56789999999 9999999999999999999 89999886 4579999999999999999999999999988 46
Q ss_pred EEeec
Q 009126 418 LVKPY 422 (543)
Q Consensus 418 ~Vk~A 422 (543)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.26 E-value=9.6e-12 Score=123.27 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG-~V~~VrI~~d---~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
..++|||+|| ++.+|+++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|.+|++.|+++.++|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4689999999 99999999999999999 9999999886 58999999999999999999999999999999999999
Q ss_pred ccccc
Q 009126 423 REKSR 427 (543)
Q Consensus 423 k~K~~ 427 (543)
.++..
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 87654
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.5e-11 Score=128.06 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=68.5
Q ss_pred CCCCCCCeEEEcC--CCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEc---Ce--
Q 009126 343 GIVAGSRQIYLTF--PAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC---GA-- 415 (543)
Q Consensus 343 ~~~~~~rtIfVg~--L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~---Gr-- 415 (543)
....++++||||| | ++.+||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 13 ~~~~ps~~l~VgN~gl-~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 13 TVSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CCSSCCSEEEEETCSG-GGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred ecCCCCCEEEEEcCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3456788999999 5 68999999999999999999999987 8999999999999999999999999983 45
Q ss_pred EEEEeecc
Q 009126 416 RVLVKPYR 423 (543)
Q Consensus 416 ~V~Vk~Ak 423 (543)
.+.|.+++
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 56777764
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=1.7e-11 Score=108.42 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCC---------CCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeE
Q 009126 346 AGSRQIYLTFPAEST---------FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~---------~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~ 416 (543)
.+++.|.+.|+-+.. -.++||++.|++||+|++|.|+.+..+|||||+|.+.++|++|++.|||..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346678888873321 12468999999999999999988778999999999999999999999999999999
Q ss_pred EEEeecccc
Q 009126 417 VLVKPYREK 425 (543)
Q Consensus 417 V~Vk~Ak~K 425 (543)
|.|.++...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998654
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=1.2e-11 Score=109.99 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCC----CCCHHHHHHHhhcCCCEEEEEeeccC--------CCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 347 GSRQIYLTFPAES----TFTEQDVSNYFSKFGPVQDVRIPCQQ--------KRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 347 ~~rtIfVg~L~~~----~~tEedLr~~Fs~fG~V~~VrI~~d~--------sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
++++|+|.|+-+. +-.++||++.|++||+|.+|+|+.+. ++||+||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5678999998332 22479999999999999999999862 46999999999999999999999999999
Q ss_pred eEEEEeeccc
Q 009126 415 ARVLVKPYRE 424 (543)
Q Consensus 415 r~V~Vk~Ak~ 424 (543)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=92.26 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=65.5
Q ss_pred CCCCCCCeEEEcCCCC---CC-CCH---HHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCe
Q 009126 343 GIVAGSRQIYLTFPAE---ST-FTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (543)
Q Consensus 343 ~~~~~~rtIfVg~L~~---~~-~tE---edLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr 415 (543)
..+|+.-||+|.-.++ .+ +++ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+|++ ||+..++||
T Consensus 2 ~~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 2 SSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4567888999988631 12 342 6799999999999999998744 8999999999999998 999999999
Q ss_pred EEEEeecccc
Q 009126 416 RVLVKPYREK 425 (543)
Q Consensus 416 ~V~Vk~Ak~K 425 (543)
.|+|+.+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998754
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=3.3e-08 Score=84.99 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCCCCCCCeEEEcCCCCCC------CCH---HHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEE
Q 009126 342 GGIVAGSRQIYLTFPAEST------FTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (543)
Q Consensus 342 g~~~~~~rtIfVg~L~~~~------~tE---edLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (543)
...+|+.-||+|.-+ +++ +++ .+|.+.|++||+|..||++.|+ +||+|.+.++|.+|++ ||+..+
T Consensus 9 ~~~GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCCCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEE
T ss_pred eecCCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeee
Confidence 356788889999987 422 332 4689999999999999999865 9999999999999999 899999
Q ss_pred cCeEEEEeec
Q 009126 413 CGARVLVKPY 422 (543)
Q Consensus 413 ~Gr~V~Vk~A 422 (543)
+||.|+|+.-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=9.9e-08 Score=85.51 Aligned_cols=76 Identities=11% Similarity=0.002 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECC-HHHHHHHHHhc--CCeEEcCeEEEEe
Q 009126 345 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVF-AETVKQILAKG--NPHFVCGARVLVK 420 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~-~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~-~e~A~~Al~~m--ng~~i~Gr~V~Vk 420 (543)
.+...-|||+|| +++ +++++|+++|++||+|..|.++.| +-.|||.|.+ .++|..|+..+ ++..|+|..+.+.
T Consensus 15 ~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 15 EKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 355678999999 888 999999999999999999999985 4479999999 89999999998 4888999888887
Q ss_pred ecc
Q 009126 421 PYR 423 (543)
Q Consensus 421 ~Ak 423 (543)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=4.4e-08 Score=93.94 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=58.7
Q ss_pred CCHHHHHHHhhcCCCEEEEEeecc--------CCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeeccc
Q 009126 361 FTEQDVSNYFSKFGPVQDVRIPCQ--------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (543)
Q Consensus 361 ~tEedLr~~Fs~fG~V~~VrI~~d--------~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak~ 424 (543)
-.+++|++.|++||+|.+|.|+.+ +++||+||+|.+.++|.+|++.|||..++||.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 357899999999999999999852 5789999999999999999999999999999999999764
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00091 Score=59.07 Aligned_cols=74 Identities=8% Similarity=0.034 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcC-----CCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeec
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKF-----GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~f-----G~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~A 422 (543)
.++|-+-+| +.++++..|+.+...| |.|++|.+.. ..|=|+|.|.+..+|-+|.=.++|..|+||+|+|.-.
T Consensus 21 ~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 578999999 8899999999999999 9999999988 4566999999999999999889999999999999876
Q ss_pred cc
Q 009126 423 RE 424 (543)
Q Consensus 423 k~ 424 (543)
.+
T Consensus 98 ~e 99 (117)
T 2l9w_A 98 ND 99 (117)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.0017 Score=56.57 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhc-----CCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEe
Q 009126 346 AGSRQIYLTFPAESTFTEQDVSNYFSK-----FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (543)
Q Consensus 346 ~~~rtIfVg~L~~~~~tEedLr~~Fs~-----fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk 420 (543)
...++|.|.+| +..++++.|+-||+. =|+|++|.... +=|+|+|.+++.|++.|+. ..|.++|.+|.|.
T Consensus 6 ~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 34679999999 778999999999987 37999987742 6799999999999999998 7899999999999
Q ss_pred eccccc
Q 009126 421 PYREKS 426 (543)
Q Consensus 421 ~Ak~K~ 426 (543)
++.++.
T Consensus 80 P~~~~~ 85 (104)
T 2dhx_A 80 PAPPRA 85 (104)
T ss_dssp ECCCCC
T ss_pred cCCCCC
Confidence 988775
No 211
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.00069 Score=55.64 Aligned_cols=26 Identities=31% Similarity=0.861 Sum_probs=22.4
Q ss_pred CCCcccccccccccCCCCCCCcccCC
Q 009126 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
...-.+|.||.+|.|++|.+|+|.|.
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred CCcceeCHhHccCcCCCCCCCCCccc
Confidence 33457899999999999999999998
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0088 Score=53.34 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcC-eEEEEeecccc
Q 009126 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-ARVLVKPYREK 425 (543)
Q Consensus 347 ~~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-r~V~Vk~Ak~K 425 (543)
..+.|.|-+. +.. ....|-++|++||+|.+...+. ...+-.|+|.++.+|++||.. |+..|+| -.|-|++...+
T Consensus 23 ~~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 23 DDTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp GGGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCH
T ss_pred CCCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCH
Confidence 3568888787 433 4677889999999999998744 677999999999999999999 9999985 77889997655
Q ss_pred c
Q 009126 426 S 426 (543)
Q Consensus 426 ~ 426 (543)
.
T Consensus 98 ~ 98 (119)
T 1wwh_A 98 N 98 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 213
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.51 E-value=0.00048 Score=56.06 Aligned_cols=25 Identities=32% Similarity=0.906 Sum_probs=22.8
Q ss_pred CCcccccccccccCCCCCCCcccCC
Q 009126 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
....+|.||.+|.|++|.+|+|.|.
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccc
Confidence 3467999999999999999999998
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.47 E-value=0.0038 Score=54.47 Aligned_cols=76 Identities=8% Similarity=0.008 Sum_probs=62.9
Q ss_pred CCeEEEcCCCCCCCCH----HHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 348 SRQIYLTFPAESTFTE----QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tE----edLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
.++|+|++|+..-++. +.++++|.+|+++......+ +-.=.-|.|.++++|.+|-..|++..+.|++++|..++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4689999993333343 46789999999999887776 44457999999999999999999999999999999998
Q ss_pred cc
Q 009126 424 EK 425 (543)
Q Consensus 424 ~K 425 (543)
+-
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 215
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.09 E-value=0.0015 Score=52.71 Aligned_cols=23 Identities=39% Similarity=1.092 Sum_probs=20.9
Q ss_pred cccccccccccCCCCCC-CcccCC
Q 009126 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~s-Crf~Hg 214 (543)
..+|.+|.+|.|++|.+ |+|.|.
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCC
T ss_pred chhCHHHhcCCCCCCCCCCCCccC
Confidence 35899999999999995 999997
No 216
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.99 E-value=0.0023 Score=55.01 Aligned_cols=23 Identities=39% Similarity=1.211 Sum_probs=14.1
Q ss_pred cccccccccccCCCCCCCcccCC
Q 009126 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
-.+|.||.+|.|++|.+|+|.|.
T Consensus 13 ~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 13 RELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccCcccccCcCCCCCCCCCCCC
Confidence 34566666666666666666664
No 217
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.0021 Score=52.05 Aligned_cols=23 Identities=35% Similarity=1.067 Sum_probs=22.1
Q ss_pred cccccccccccCCCCCCCcccCC
Q 009126 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
.+.|.+|..|.|+.|+.|.|.||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 49999999999999999999999
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.75 E-value=0.011 Score=53.60 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=54.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEEEE-Eeecc-----------------CCCceEEEEECCHHHHHHHHHhcCCeE
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ-----------------QKRMFGFVTFVFAETVKQILAKGNPHF 411 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~V~~V-rI~~d-----------------~sRGFGFVtF~~~e~A~~Al~~mng~~ 411 (543)
.|.|-+. +. -....+-++|++||.|.+- .+..+ ....+--|+|++..+|.+||.+ ||..
T Consensus 9 ~VtVFGF-p~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 9 AILVFGY-PE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp EEEEECC-CG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred EEEEEec-CH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 4555555 33 3566788999999999872 22210 1356779999999999999999 9999
Q ss_pred EcCeEEEEeeccc
Q 009126 412 VCGARVLVKPYRE 424 (543)
Q Consensus 412 i~Gr~V~Vk~Ak~ 424 (543)
|+|..|-|+++.+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999999964
No 219
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.63 E-value=0.0044 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.962 Sum_probs=22.9
Q ss_pred CCCcccccccc-cccCCCCCCCcccCC
Q 009126 189 EFPVKVCHYFN-KGFCKHGNNCRYFHG 214 (543)
Q Consensus 189 ~~~~kpC~YFa-rG~Ck~G~sCrf~Hg 214 (543)
...-++|.||. .|.|+.|.+|+|.|+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCC
Confidence 34578999995 899999999999998
No 220
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.50 E-value=0.0038 Score=50.32 Aligned_cols=23 Identities=43% Similarity=0.997 Sum_probs=21.4
Q ss_pred CcccccccccccCCCCCCCcccCC
Q 009126 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
....|.+|.+|.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 4778999999999999 9999998
No 221
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.49 E-value=0.004 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.769 Sum_probs=21.4
Q ss_pred ccccccc-ccccCCCCCCCcccCC
Q 009126 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YF-arG~Ck~G~sCrf~Hg 214 (543)
..+|.|| .+|.|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 6789999 5999999999999998
No 222
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.47 E-value=0.0049 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.951 Sum_probs=20.9
Q ss_pred cccccccccccCCCCC-CCcccCC
Q 009126 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~-sCrf~Hg 214 (543)
.-+|++|.||.|++|. .|+|.|-
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 4589999999999995 9999998
No 223
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.03 E-value=0.004 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.898 Sum_probs=0.0
Q ss_pred Cccccc-ccccccCCCCCCCcccCC
Q 009126 191 PVKVCH-YFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 191 ~~kpC~-YFarG~Ck~G~sCrf~Hg 214 (543)
..++|. |+..|+|++|..|+|.|+
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp -------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCC
Confidence 357897 556899999999999998
No 224
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.86 E-value=0.011 Score=49.64 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=40.9
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 009126 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (543)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~ 62 (543)
.-+|.+|++++||.|.||.|+||= .+..|++.|= -.+.+|++-|.+|-.-|.
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLE--md~~ElL~Ll-e~~e~L~~kV~EA~~vL~ 80 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLE--MDNGEILNLL-DTPGLLDAKVQEALEVLN 80 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSC--THHHHHHTTC-CTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccccchhhHhHhc--CCHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999985 4555677774 455677888888876654
No 225
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.80 E-value=0.007 Score=52.08 Aligned_cols=24 Identities=42% Similarity=0.892 Sum_probs=22.1
Q ss_pred CCcccccccccccCCCCCCCcccCC
Q 009126 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
.....|.||.+|.|.+| +|+|+|.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred CccccchhhccCCCCCC-CcCccCC
Confidence 45789999999999999 9999998
No 226
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.78 E-value=0.018 Score=49.16 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=40.9
Q ss_pred HHHHHhhhh--cCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 009126 8 KAVYNRIQK--LEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (543)
Q Consensus 8 ~~v~~riq~--~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~ 62 (543)
.-+|.+|++ ++||.|.||.|+||= .+..|++.|=- .+.+|++-|.+|-.-|.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLLE--md~~ElL~LLe-s~e~L~~kV~EA~~vL~ 79 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMILD--LPPQEVFPLLE-SDELFEQHYKEASAAYE 79 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHTT--SCHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHhc--CCHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 458999999 999999999999984 56677887754 45567788888766554
No 227
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=94.72 E-value=0.011 Score=46.78 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=39.2
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 009126 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (543)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l 61 (543)
..+|.+|++++|++|.||.|+||= .+..|++.|=-.| ..|++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLLE--~d~~ell~ll~~~-e~L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLLE--LSPAQLLLLLASE-DSLRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHTT--SCHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhcc--CCHHHHHHHHcCH-HHHHHHHHHHHHHH
Confidence 468999999999999999999985 4556778775544 45677777776543
No 228
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.70 E-value=0.0078 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.995 Sum_probs=21.4
Q ss_pred cccccccccccCCCCC-CCcccCC
Q 009126 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~-sCrf~Hg 214 (543)
.-+|.+|.||.|++|. .|+|.|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 5589999999999998 9999997
No 229
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.0037 Score=53.79 Aligned_cols=23 Identities=39% Similarity=1.079 Sum_probs=21.4
Q ss_pred cccccccccccCCCCC-CCcccCC
Q 009126 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~-sCrf~Hg 214 (543)
..+|.||.||.|++|. .|+|.|.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCC
Confidence 5689999999999998 7999998
No 230
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.02 E-value=0.015 Score=48.68 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.9
Q ss_pred CCcccccccccccCCCCCCCcccCC
Q 009126 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
.....|.+|.||.|.+| +|+|+|.
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCC
T ss_pred CceeehhHhhhccccCC-CcceeCC
Confidence 34789999999999998 9999998
No 231
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.69 E-value=0.023 Score=61.24 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=41.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHh
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK 406 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~ 406 (543)
.|.|||.. +..+++.+|.+||++||+|.++.+-. .+.-|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~~--~~~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHC--PEKISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEE--CCC---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEc--CCCCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHhc
Confidence 46899985 46799999999999999999997654 3345999999999999987665
No 232
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=93.53 E-value=0.021 Score=48.03 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=40.9
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 009126 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (543)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~ 62 (543)
.-+|.+|++++||+|.||.|+||=- +..|++.|=-.|| .|++-|..|-.-|.
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLEm--d~~Ell~Lles~e-~L~~kv~EA~~vL~ 79 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLEM--DQTEVLHLLESPD-ALKAKVAEAMEVLR 79 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHH--CHHHHHHHTTCSH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhhhhhcC--CHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 4689999999999999999999964 5666787755554 56778888876654
No 233
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=93.52 E-value=0.032 Score=51.21 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=41.8
Q ss_pred HHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhcC
Q 009126 9 AVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLGL 63 (543)
Q Consensus 9 ~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~~ 63 (543)
.+|-+|++++||+|.||.|+||= .+..|++.|=-.| .+|++.|.+|-.-|--
T Consensus 73 ~LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~-e~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 73 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESP-ESLRSKVDEAVAVLQA 124 (144)
T ss_dssp SSHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCT-THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 36899999999999999999995 4556788885554 5678888888887755
No 234
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.16 E-value=0.033 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.850 Sum_probs=20.7
Q ss_pred ccccccccc-ccCCCCCCCcccCCC
Q 009126 192 VKVCHYFNK-GFCKHGNNCRYFHGH 215 (543)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrf~Hg~ 215 (543)
..+|.||.+ |.|. |..|+|.|..
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~ 61 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHID 61 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCC
T ss_pred CCCCcccCCCCccC-CCCeeccCCC
Confidence 458999999 9999 8999999983
No 235
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=92.87 E-value=0.047 Score=46.18 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=39.6
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 009126 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (543)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l 61 (543)
.-+|.+|++++|+.|.||.|+||=- +..|++.|==. +..|++-|..|-.-|
T Consensus 26 E~Lyp~V~~~~p~~A~KITGMLLEm--d~~Ell~lle~-~e~L~~kV~EA~~vL 76 (88)
T 3kuj_A 26 ERLFPLIQAMHPTLAGKITGMLLEI--DNSELLHMLES-PESLRSKVDEAVAVL 76 (88)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHTTS--CHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhhCCCccchhhhHhhcC--CHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 3689999999999999999999954 55667777433 566788888776655
No 236
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.84 E-value=0.025 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.827 Sum_probs=21.5
Q ss_pred Cccccccccc-ccCCCCCCCcccCCC
Q 009126 191 PVKVCHYFNK-GFCKHGNNCRYFHGH 215 (543)
Q Consensus 191 ~~kpC~YFar-G~Ck~G~sCrf~Hg~ 215 (543)
...+|.||.+ |.|.+ ..|+|.|.-
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~ 67 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHID 67 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCC
Confidence 3568999999 99999 999999983
No 237
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.44 E-value=0.05 Score=48.59 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=26.9
Q ss_pred EEEeecc--CCCceEEEEECCHHHHHHHHHhcCCe
Q 009126 378 DVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPH 410 (543)
Q Consensus 378 ~VrI~~d--~sRGFGFVtF~~~e~A~~Al~~mng~ 410 (543)
.++|+.+ +++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence 3555554 68999999999999999999887653
No 238
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=91.46 E-value=0.05 Score=46.06 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=21.4
Q ss_pred CcccccccccccCCCCCCCcccCC
Q 009126 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
..-.|.+|.||.|.++ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4788999999999997 9999998
No 239
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=91.14 E-value=0.63 Score=39.36 Aligned_cols=65 Identities=6% Similarity=0.048 Sum_probs=53.6
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d------~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
.||.|.+| ++.+||+++.+..+.+..+.......+ ..-.-|+|.|.+.+++..-.+..+|+.+-+
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 48999999 999999999999999988776665543 123459999999999999888888888743
No 240
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=88.73 E-value=0.81 Score=39.49 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=42.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhc
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~m 407 (543)
.+-++|++ +.++...||.+.|+.||. ..|+.+- ---|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l~F--P~ewKt~DI~~lFs~fgg-v~I~Wid---DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHVTF--PKEWKTSDLYQLFSAFGN-IQISWID---DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEEEC--CTTCCHHHHHHHHTTTCS-CCCEEEE---TTEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEEeC--ChhhhhHHHHHHhhccCC-EEEEEEc---CCeEEEEecCHHHHHHHHHhc
Confidence 44666654 577889999999999994 3455554 446999999999999999875
No 241
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.60 E-value=0.092 Score=46.71 Aligned_cols=41 Identities=15% Similarity=-0.050 Sum_probs=37.5
Q ss_pred CCCceEEEEECCHHHHHHHHHhc-CCeEEcCeEEEEeeccccc
Q 009126 385 QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYREKS 426 (543)
Q Consensus 385 ~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~Gr~V~Vk~Ak~K~ 426 (543)
.-+|+++|+|.+.++|++|++++ |+..++| .+.|.++..+.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~ 52 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTF 52 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcc
Confidence 56899999999999999999999 9999999 99999887654
No 242
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=85.33 E-value=0.87 Score=39.36 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=42.8
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC
Q 009126 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (543)
Q Consensus 349 rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn 408 (543)
+-++|++ +.++...||...|+.|| -..|+.+- -.-|||.|.+++.|..|+..++
T Consensus 7 HV~~l~F--P~ewKt~Di~~lFs~fg-gv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTF--PKEWKTSDLYQLFSAFG-NIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEC--CTTCCHHHHHHHTTTSE-EEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeC--ChhhhhHHHHHHHhccC-CEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 3566755 46778899999999999 45666665 4469999999999999999753
No 243
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=75.62 E-value=0.86 Score=34.54 Aligned_cols=26 Identities=31% Similarity=0.802 Sum_probs=21.4
Q ss_pred CCcccccccc-cccCCCCCCCcccCCC
Q 009126 190 FPVKVCHYFN-KGFCKHGNNCRYFHGH 215 (543)
Q Consensus 190 ~~~kpC~YFa-rG~Ck~G~sCrf~Hg~ 215 (543)
..-.+|.=|+ -|+|.+|-.|.+.|-.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred cccchhhhccccccCCCCCCCCccccC
Confidence 4567888775 5999999999999973
No 244
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=75.23 E-value=4.7 Score=34.50 Aligned_cols=66 Identities=5% Similarity=0.030 Sum_probs=47.9
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCeEEcC
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d------~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (543)
+-||.|..| ++.+||+++.+.++.+=++.......+ ..-.-|+|.|.+.+++..-.+..+|+.+-+
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 458999999 899999998877776544432222221 112348999999999999999888888743
No 245
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=64.16 E-value=0.32 Score=41.48 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHH
Q 009126 345 VAGSRQIYLTFPAESTFTEQD 365 (543)
Q Consensus 345 ~~~~rtIfVg~L~~~~~tEed 365 (543)
....++|||+|| ++++|++.
T Consensus 94 ~~~~~~lyv~Nl-~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNF-GPGSTRAA 113 (115)
T ss_dssp ---------------------
T ss_pred cCCCCceEeCCC-CCCccccc
Confidence 345668999999 78888764
No 246
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=63.53 E-value=1.4 Score=43.15 Aligned_cols=25 Identities=36% Similarity=0.733 Sum_probs=0.0
Q ss_pred CCCCcccccccccccCCCCCCCcccCC
Q 009126 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 188 ~~~~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
++..+.||-|-. .|.-|+.|+|.|-
T Consensus 188 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 212 (223)
T 3v33_A 188 LEHRKQPCPYGR--KCTYGIKCRFFHP 212 (223)
T ss_dssp ---------------------------
T ss_pred cccCCCCCCCCc--ccccCCcceecCC
Confidence 455789999965 4999999999995
No 247
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=59.40 E-value=23 Score=38.27 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeeccCCCceEEEEECCHHHHHHHHHhcC
Q 009126 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (543)
Q Consensus 348 ~rtIfVg~L~~~~~tEedLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mn 408 (543)
.+.++|+.. ..+...+|.+.|+.||.| +|+.+ ....+||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~f~--~~~~~~~i~~~fs~fg~v-~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVTFP--KEWKTSDLYQLFSAFGNI-QISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEECC--TTCCHHHHHHHGGGGCCC-EEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEeCC--CCCCHHHHHHHHHhcCCE-EEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 457888854 566789999999999954 56555 45679999999999999999874
No 248
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=48.98 E-value=5.5 Score=39.00 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=22.0
Q ss_pred CCcccccccccccC----CCCCCCcccCC
Q 009126 190 FPVKVCHYFNKGFC----KHGNNCRYFHG 214 (543)
Q Consensus 190 ~~~kpC~YFarG~C----k~G~sCrf~Hg 214 (543)
-.++.|+||--|.| ..|+.|+|.|-
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 35899999999999 46799999997
No 249
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=40.54 E-value=11 Score=36.95 Aligned_cols=23 Identities=30% Similarity=0.714 Sum_probs=21.4
Q ss_pred CcccccccccccCCCCCCCcccCC
Q 009126 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
...+|.||-+|.|+. .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 489999999999999 89999887
No 250
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=35.96 E-value=61 Score=25.19 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=43.7
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCC-----EEEEEeeccCCCceEEEEECCHHHHHHHHHhcCCeEEcCeEEEEeecc
Q 009126 350 QIYLTFPAESTFTEQDVSNYFSKFGP-----VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (543)
Q Consensus 350 tIfVg~L~~~~~tEedLr~~Fs~fG~-----V~~VrI~~d~sRGFGFVtF~~~e~A~~Al~~mng~~i~Gr~V~Vk~Ak 423 (543)
++||..=....++..+|-.++..-+. |=.|+| .-.|.||.-... .+..+++.+++..++|+.+.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 45554333455677777777775544 445566 456899998874 4777889999999999999998764
No 251
>1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2
Probab=29.13 E-value=20 Score=25.10 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=18.1
Q ss_pred CCCCCcccccccccccCCCCCCCcc
Q 009126 187 LPEFPVKVCHYFNKGFCKHGNNCRY 211 (543)
Q Consensus 187 ~~~~~~kpC~YFarG~Ck~G~sCrf 211 (543)
....|-|||+ .--|+-|..|+|
T Consensus 10 I~KeG~kpCK---~KKC~GGWkCK~ 31 (37)
T 1i25_A 10 IEKEGDKPCK---KKKCKGGWKCKF 31 (37)
T ss_dssp SSBCSSSBCB---CCCCCTTEEECS
T ss_pred EcccCCCccc---cccCCCCceEEE
Confidence 3455779997 788999999998
No 252
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.00 E-value=15 Score=33.25 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCCEEEEEeeccCCCceEEEEEC
Q 009126 364 QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFV 395 (543)
Q Consensus 364 edLr~~Fs~fG~V~~VrI~~d~sRGFGFVtF~ 395 (543)
+|+..+|...|.|.-... .||||||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC----CCCeeEEeeC
Confidence 456667777787765544 7999999976
No 253
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=21.67 E-value=15 Score=23.62 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.6
Q ss_pred chhhhhhhhhcccC
Q 009126 21 NVSKIIGYLLLQDH 34 (543)
Q Consensus 21 ~a~ki~g~ll~qd~ 34 (543)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 46799999999875
No 254
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=21.39 E-value=23 Score=26.57 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=17.2
Q ss_pred cccccccccccCCCCCCCcccCC
Q 009126 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
..||.=-.++||-|| .|.|.+.
T Consensus 5 ~~~C~~~~~~yC~nG-~C~~~~~ 26 (50)
T 3e50_C 5 FNDCPDSHTQFCFHG-TCRFLVQ 26 (50)
T ss_pred ccccChhhcCcccCC-EEeeccC
Confidence 356666668999999 9999665
No 255
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=21.32 E-value=22 Score=26.58 Aligned_cols=22 Identities=32% Similarity=0.827 Sum_probs=18.0
Q ss_pred cccccccccccCCCCCCCcccCC
Q 009126 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (543)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrf~Hg 214 (543)
..||.=-..+||.|| .|+|.++
T Consensus 9 ~~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 9 KNPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CCTTTTTGGGTCSSS-EEEEETT
T ss_pred CcccCchhhCcCCCC-EEEEecC
Confidence 358876667999999 8999776
No 256
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=20.21 E-value=16 Score=23.39 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.0
Q ss_pred chhhhhhhhhcccC
Q 009126 21 NVSKIIGYLLLQDH 34 (543)
Q Consensus 21 ~a~ki~g~ll~qd~ 34 (543)
++.||-+.|||||+
T Consensus 2 ~VGKiYA~llI~d~ 15 (23)
T 3dvk_B 2 HMGKIYAAMMIMDY 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 57899999999975
Done!