BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009127
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 151/557 (27%), Positives = 238/557 (42%), Gaps = 67/557 (12%)
Query: 26 SPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLIS 84
S R + W++ Y P + + INGQFPGP I A D++++ + N L E +I
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 85 WNGLQQRRNSWQDGVYGTT-CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGI 143
W+G+ QR W DG + C I PG+ F Y D G++FY ++AG +G +
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSL 119
Query: 144 RIWSRXXXXXXXXXXAGDFTVLAGDWYRSNHYVLRRLLDSGHN--LPFPDGLLINGRG-- 199
I G+ +L DW+ + + L S + P +L+NGRG
Sbjct: 120 -IVDPPQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQF 178
Query: 200 ----------------------WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKL 237
Y F V P +TYR RI++ ++NF I H + +
Sbjct: 179 DCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLV 238
Query: 238 VEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAP-QDYYIVVSSRF----TPRVLTTTAI 292
VE +G++ + +DI+ G++YSVL+T DQ P ++Y++ V +R TP LT
Sbjct: 239 VEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNY 298
Query: 293 LHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTI 352
L S S+ S P P T +++++ + +TA+ P P +K +R I
Sbjct: 299 LPNSVSKLPTSPP----PQTPAWDDFDRSKNFTYRITAAMGSPKPP-------VKFNRRI 347
Query: 353 TLANSAPYMNGKQRYAINSVSFVPADTP---------LKLADYFKIPGVFTLG-SMPTSP 402
L N+ +NG ++AIN VS TP L D P VF + T P
Sbjct: 348 FLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPP 407
Query: 403 NWGNAYLQTSVMAANFREFVEIVFQNWE------DTVQSYHIDGYSFFVVGMDGGQWTPA 456
+ V E V+++ QN +H+ G+ F+V+G G+++
Sbjct: 408 TNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAE 467
Query: 457 SRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPA 516
+ NL++ R+T ++P WTAI DN G+W ++G A
Sbjct: 468 EESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVF-----A 522
Query: 517 NSWRDELPIPKNALLCG 533
IP AL CG
Sbjct: 523 EGVEKVGRIPTKALACG 539
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 151/369 (40%), Gaps = 46/369 (12%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTND----NLIISVYNY-LREPFLISWNGLQ 89
I+ G + P G +Q IL+N FP P I D N+I ++ N+ + + I W+G
Sbjct: 10 ISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q +W DG + CPI G F Y Q DQ G+++Y G G I ++
Sbjct: 70 QHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYTF-- 205
D TV+ DWY V G +P D LING G + T
Sbjct: 130 NDPHASLYDVDDDSTVITLADWYHLAAKV-------GAPVPTADATLINGLGRSAATLAA 182
Query: 206 -----TVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQT 260
TV G+ YRFR+ ++ + F I GHS+ ++E + + +T +L I Q
Sbjct: 183 DLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQR 242
Query: 261 YSVLVTMDQAPQDYYI-VVSSRFTPRVL--TTTAILHYSNSRRGVSGPIPGGPTTEIAWS 317
YS ++ DQ +Y+I + + T T +AIL Y G P PTT S
Sbjct: 243 YSFVLNADQDVDNYWIRALPNSGTQNFAGGTNSAILRY-------DGAAPVEPTTSQTPS 295
Query: 318 LN---QARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSF 374
N ++ TA+ P P G + LA + + + IN SF
Sbjct: 296 TNPLVESALTTLKGTAAPGSPTPGG------------VDLALNMAFGFAGGNFTINGASF 343
Query: 375 VPADTPLKL 383
P P+ L
Sbjct: 344 TPPTVPVLL 352
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 151/369 (40%), Gaps = 46/369 (12%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTND----NLIISVYNY-LREPFLISWNGLQ 89
I+ G + P G +Q IL+N FP P I D N+I ++ N+ + + I W+G
Sbjct: 10 ISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q +W DG + CPI G F Y Q DQ G+++Y G G I ++
Sbjct: 70 QHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYTF-- 205
D TV+ DWY V G +P D LING G + T
Sbjct: 130 NDPHASLYDVDDDSTVITLADWYHLAAKV-------GAPVPTADATLINGLGRSAATLAA 182
Query: 206 -----TVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQT 260
TV G+ YRFR+ ++ + F I GHS+ ++E + + +T +L I Q
Sbjct: 183 DLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQR 242
Query: 261 YSVLVTMDQAPQDYYI-VVSSRFTPRVL--TTTAILHYSNSRRGVSGPIPGGPTTEIAWS 317
YS ++ DQ +Y+I + + T T +AIL Y G P PTT S
Sbjct: 243 YSFVLNADQDVDNYWIRALPNSGTQNFAGGTNSAILRY-------DGAAPVEPTTSQTPS 295
Query: 318 LN---QARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSF 374
N ++ TA+ P P G + LA + + + IN SF
Sbjct: 296 TNPLVESALTTLKGTAAPGSPTPGG------------VDLALNMAFGFAGGNFTINGASF 343
Query: 375 VPADTPLKL 383
P P+ L
Sbjct: 344 TPPTVPVLL 352
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 114/259 (44%), Gaps = 22/259 (8%)
Query: 32 TWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWN 86
T +T ++ P G + GIL+NG GP I NDN ++V N L P + I W+
Sbjct: 8 TMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH 66
Query: 87 GLQQRRNSWQDGVYGTT-CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRI 145
GL QR +W DG G CPI PG F Y G+++Y F G G + I
Sbjct: 67 GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVI 126
Query: 146 WSRXXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRG----- 199
+ + T++ DWY H + + PD LING+G
Sbjct: 127 YDDNDPHAALYDEDDENTIITLADWY---HIPAPSIQGAAQ----PDATLINGKGRYVGG 179
Query: 200 --WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHL 257
VE G+ YR R+ ++ + F I GH + ++EV+G T +T L I
Sbjct: 180 PAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFT 239
Query: 258 GQTYSVLVTMDQAPQDYYI 276
GQ YS ++ +Q +Y+I
Sbjct: 240 GQRYSFVLDANQPVDNYWI 258
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 114/259 (44%), Gaps = 22/259 (8%)
Query: 32 TWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWN 86
T +T ++ P G + GIL+NG GP I NDN ++V N L P + I W+
Sbjct: 8 TMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH 66
Query: 87 GLQQRRNSWQDGVYGTT-CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRI 145
GL QR +W DG G CPI PG F Y G+++Y F G G + I
Sbjct: 67 GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVI 126
Query: 146 WSRXXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRG----- 199
+ + T++ DWY H + + PD LING+G
Sbjct: 127 YDDNDPHAALYDEDDENTIITLADWY---HIPAPSIQGAAQ----PDATLINGKGRYVGG 179
Query: 200 --WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHL 257
VE G+ YR R+ ++ + F I GH + ++EV+G T +T L I
Sbjct: 180 PAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFT 239
Query: 258 GQTYSVLVTMDQAPQDYYI 276
GQ YS ++ +Q +Y+I
Sbjct: 240 GQRYSFVLDANQPVDNYWI 258
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 148/369 (40%), Gaps = 46/369 (12%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTND----NLIISVYNY-LREPFLISWNGLQ 89
I+ G + P G +Q IL+N FP P I D N+I ++ N+ + + I W+G
Sbjct: 10 ISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q +W DG + CPI G F Y Q DQ G+++Y G G I ++
Sbjct: 70 QHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYTF-- 205
D TV+ DWY V G +P D LING G + T
Sbjct: 130 QDPHKSLYDVDDDSTVITLADWYHLAAKV-------GSPVPTADATLINGLGRSIDTLNA 182
Query: 206 -----TVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQT 260
TV G+ YRFR+ ++ + F I GHS+ ++E + + T ++ I Q
Sbjct: 183 DLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQR 242
Query: 261 YSVLVTMDQAPQDYYIVVSSRFTPRVL---TTTAILHYSNSRRGVSGPIPGGPTTEIAWS 317
YS ++ DQ +Y+I R +AIL Y G P PTT S
Sbjct: 243 YSFVLNADQDVGNYWIRALPNSGTRNFDGGVNSAILRY-------DGAAPVEPTTSQTPS 295
Query: 318 LN---QARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSF 374
N ++ TA+ P P G + LA + + ++ IN SF
Sbjct: 296 TNPLVESALTTLEGTAAPGSPAPGG------------VDLALNMAFGFAGGKFTINGASF 343
Query: 375 VPADTPLKL 383
P P+ L
Sbjct: 344 TPPTVPVLL 352
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 149/367 (40%), Gaps = 41/367 (11%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
IT + P G +Q +++NG PGP I D ++V + L + I W+G
Sbjct: 10 ITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q+ +W DG + CPI G +F Y Q DQ G+++Y G G ++
Sbjct: 70 QKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPF-PDGLLINGRGWNGYTFT 206
D TV+ DWY +V +L G P D LING+G + T T
Sbjct: 130 NDPAADLYDVDNDDTVITLVDWY----HVAAKL---GPAFPLGADATLINGKGRSPSTTT 182
Query: 207 -------VEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQ 259
V PG+ YRFR+ ++ + F I GH+M ++E + +T ++ I Q
Sbjct: 183 ADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQ 242
Query: 260 TYSVLVTMDQAPQDYYIVVSSRFTPRVLT---TTAILHYSNSRRGVSGPIPGGPTTEIAW 316
YS ++ +QA +Y+I + F T +AIL Y G + P T
Sbjct: 243 RYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYD----GAAAVEPTTTQTTSTA 298
Query: 317 SLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVP 376
LN+ TA P ++ + LA + + + IN SF P
Sbjct: 299 PLNEVNLHPLVATAVPGSP------------VAGGVDLAINMAFNFNGTNFFINGASFTP 346
Query: 377 ADTPLKL 383
P+ L
Sbjct: 347 PTVPVLL 353
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 150/369 (40%), Gaps = 45/369 (12%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
IT + P G +Q +++NG PGP + D ++V + L + I W+G
Sbjct: 10 ITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q +W DG + CPI PG +F Y Q DQ G+++Y G G ++
Sbjct: 70 QHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFP---DGLLINGRG----- 199
D TV+ DWY + + R FP D LING+G
Sbjct: 130 NDPHASRYDVDNDDTVITLADWYHTAAKLGPR---------FPGGADATLINGKGRAPSD 180
Query: 200 --WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHL 257
V G+ YRFR+ ++ + F I GH++ ++EV+ ++ ++ I
Sbjct: 181 SVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFA 240
Query: 258 GQTYSVLVTMDQAPQDYYIVVSSRFTPRVLT---TTAILHYSNSRRGVSGPIPGGPTTEI 314
Q YS ++ +QA +Y+I + F +AIL Y G PTT
Sbjct: 241 AQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRY-------DGAPAVEPTTNQ 293
Query: 315 AWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSF 374
S+ + + S P P GS G + + I +A + NG + IN SF
Sbjct: 294 TTSVKPLNEVDLHPLVSTPVP---GSPSSG--GVDKAINMAFN---FNGSNFF-INGASF 344
Query: 375 VPADTPLKL 383
VP P+ L
Sbjct: 345 VPPTVPVLL 353
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 148/369 (40%), Gaps = 45/369 (12%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
IT + P G +Q +++NG PGP + D ++V + L + I W+G
Sbjct: 10 ITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q +W DG + CPI PG +F Y Q DQ G+++Y G G ++
Sbjct: 70 QHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFP---DGLLINGRG----- 199
D TV+ DWY + + R FP D LING+G
Sbjct: 130 NDPHASRYDVDNDDTVITLADWYHTAAKLGPR---------FPGGADATLINGKGRAPSD 180
Query: 200 --WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHL 257
V G+ YRFR+ ++ + F I GH++ ++EV+ ++ ++ I
Sbjct: 181 SVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFA 240
Query: 258 GQTYSVLVTMDQAPQDYYIVVSSRFTPRVLT---TTAILHYSNSRRGVSGPIPGGPTTEI 314
Q YS ++ +QA +Y+I + F +AIL Y G PTT
Sbjct: 241 AQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRY-------DGAPAVEPTTNQ 293
Query: 315 AWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSF 374
S+ + + S P P S + + I +A + NG + IN SF
Sbjct: 294 TTSVKPLNEVDLHPLVSTPVPGAPSSG-----GVDKAINMAFN---FNGSNFF-INGASF 344
Query: 375 VPADTPLKL 383
VP P+ L
Sbjct: 345 VPPTVPVLL 353
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 116/484 (23%), Positives = 181/484 (37%), Gaps = 65/484 (13%)
Query: 34 KITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGL 88
I+ D+ P G + ++ NG FPGP I DN I+V + L + I W+GL
Sbjct: 9 TISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGL 68
Query: 89 QQRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWS 147
Q +W DG + CPI G +F Y DQ G+++Y G G + ++
Sbjct: 69 FQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYD 128
Query: 148 RXXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRG------- 199
D TV+ DWY + + P D +LING G
Sbjct: 129 PSDPYASMYDVDDDTTVITLSDWYHTAAKLGPAFP------PNADSVLINGLGRFAGGNA 182
Query: 200 WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQ 259
+ TVE + YRFR+ ++ + F I GH+M ++EV+G + ++ I Q
Sbjct: 183 SDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFASQ 242
Query: 260 TYSVLVTMDQAPQDYYIVVSSRFTPRVLT-------TTAILHYSNSRRGVSGPIPGGPTT 312
YS ++ Q+ +Y+I R P T +AIL YS + + P T+
Sbjct: 243 RYSFVLNATQSVDNYWI----RAIPNTGTIDTTGGLNSAILRYSGAD--IVDPTANATTS 296
Query: 313 EIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSV 372
I + P G G + ++ + + NG + IN+
Sbjct: 297 VIPLVETDLVPLD--------SPAAPGDPVVGGVDLAMNLDFS-----FNGTNFF-INNE 342
Query: 373 SFVPADTPLK---LADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNW 429
+ +P P+ L+ + GS+ T P L + N N
Sbjct: 343 TLIPPTVPVLLQILSGAQSASDLLPTGSVYTLPLNSTIELSFPITTVNG-------VTNA 395
Query: 430 EDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQV-YPRSWTAIYMALDN 488
+H+ G++F VV A + YN + V R T P I DN
Sbjct: 396 PGAPHPFHLHGHAFSVV-------RSAGSSDYNYVNPVRRDTVSTGNPGDNVTIRFTTDN 448
Query: 489 VGMW 492
G W
Sbjct: 449 AGPW 452
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 152/369 (41%), Gaps = 45/369 (12%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
IT P G +Q +++NG PGP + D ++V + L + + W+G
Sbjct: 10 ITDAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q+ +W DG + CPI PG +F Y Q +Q G+++Y G G ++
Sbjct: 70 QQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFP---DGLLINGRGWNGYT 204
D TV+ DWY + + R FP D LING+G
Sbjct: 130 NDPHASRYDVDNDDTVITLADWYHTAAKLGPR---------FPAGADATLINGKGRAPSD 180
Query: 205 FTVE-------PGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHL 257
+ E G+ RFR+ ++ + F I GH++ ++EV+ S++ + ++ I
Sbjct: 181 TSAELSVIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFA 240
Query: 258 GQTYSVLVTMDQAPQDYYIVVSSRFTPRVLT---TTAILHYSNSRRGVSGPIPGGPTTEI 314
Q YS ++ +QA +Y+I + F +AIL Y G PTT
Sbjct: 241 AQRYSFVLNANQAVDNYWIRANPNFGNVGFNGGINSAILRY-------DGAPAVEPTTNQ 293
Query: 315 AWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSF 374
S+ + + S P P GS G + + I +A + NG + IN SF
Sbjct: 294 TTSVKPLNEVNLHPLVSTPVP---GSPSSG--GVDKAINMAFN---FNGSNFF-INGASF 344
Query: 375 VPADTPLKL 383
VP P+ L
Sbjct: 345 VPPSVPVLL 353
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 147/368 (39%), Gaps = 38/368 (10%)
Query: 34 KITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGL 88
I DI P G + + G FPGP I DN I +N L E + I W+G
Sbjct: 10 HIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGE 69
Query: 89 QQRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWS 147
Q+ +W DG + T CPI G +F+Y G+Y+Y G G ++
Sbjct: 70 FQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYD 129
Query: 148 RXXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGY--- 203
D T++ DWY +VL + + +G + D LI+G G
Sbjct: 130 PNDPDANLYDVDDDTTIITLADWY----HVLAKEMGAGGAIT-ADSTLIDGLGRTHVNVA 184
Query: 204 -----TFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLG 258
TVE G+ YR R+ ++ + +F I GH M ++E +G + + T + I
Sbjct: 185 AVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAA 244
Query: 259 QTYSVLVTMDQAPQDYYIVVSSRFTPRVL---TTTAILHYSNSRRGVSGPIPGGPTTEIA 315
Q YS ++ +Q +Y+I + +AIL Y G P T +A
Sbjct: 245 QRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRY-------DGATTADPVT-VA 296
Query: 316 WSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFV 375
+++ I +L R G+ H G + ++L + + IN VSF
Sbjct: 297 STVHTKCLIETDLHPLS-RNGVPGNPHQGGADCNLNLSLGFAC------GNFVINGVSFT 349
Query: 376 PADTPLKL 383
P P+ L
Sbjct: 350 PPTVPVLL 357
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 122/286 (42%), Gaps = 33/286 (11%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
+T +I P G ++ I++N FP P I DN +++ N + + I W+G
Sbjct: 10 VTNANIVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q+ +W DG + CPI G +F Y Q Q G+++Y G G ++
Sbjct: 70 QKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPF-PDGLLINGRGWNGYT-- 204
+ TV+ DWY +V +L G P D LING G + T
Sbjct: 130 NDPHANLYDVDDESTVITLADWY----HVAAKL---GPRFPKGADSTLINGLGRSTSTPT 182
Query: 205 -----FTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQ 259
+V G+ YRFR+ ++ + F I H + ++E +G T T ++ I Q
Sbjct: 183 ADLAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQ 242
Query: 260 TYSVLVTMDQAPQDYYIVVSSRFTPRVLTT-------TAILHYSNS 298
YS ++ +Q +Y+I R P TT +AIL Y ++
Sbjct: 243 RYSFVLNANQDVDNYWI----RANPNFGTTGFADGVNSAILRYDDA 284
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 111/258 (43%), Gaps = 22/258 (8%)
Query: 40 IYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQQRRNS 94
+ P G + I++NG FP P I D ++V + L + I W+G Q +
Sbjct: 15 VSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTN 74
Query: 95 WQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXX 153
W DG + CPI G +F Y DQ G+++Y G G ++
Sbjct: 75 WADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHA 134
Query: 154 XXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPF-PDGLLINGRGWNGYTFT----- 206
+ TV+ DWY + RL G P D LING G + T T
Sbjct: 135 SRYDVDNESTVITLTDWY----HTAARL---GPRFPLGADATLINGLGRSASTPTAALAV 187
Query: 207 --VEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVL 264
V+ G+ YRFR+ ++ + F I GH++ ++EV+G ++ ++ I Q YS +
Sbjct: 188 INVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFV 247
Query: 265 VTMDQAPQDYYIVVSSRF 282
+ +Q +Y+I + F
Sbjct: 248 LNANQTVGNYWIRANPNF 265
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 132/335 (39%), Gaps = 47/335 (14%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
IT P G +Q +++NG PGP + D ++V + L + + W+G
Sbjct: 10 ITNAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWS- 147
Q+ +W DG + CPI PG +F Y Q +Q G+++Y G G ++
Sbjct: 70 QQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 148 RXXXXXXXXXXAGDFTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRG-------W 200
D T+ DWY + + + D LING+G
Sbjct: 130 NDPHASRYDVDNDDTTITLADWYHTAAKLGPAFPNGA------DSTLINGKGRAPSDSSA 183
Query: 201 NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQT 260
+V G+ RFR+ ++ + F I GH+ ++E + ++ ++ I Q
Sbjct: 184 QLSVVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQR 243
Query: 261 YSVLVTMDQAPQDYYIVVSSRF------------------------TPRVLTTTAILHYS 296
YS + +QA +Y+I + F T T+T L+ +
Sbjct: 244 YSFTLNANQAVDNYWIRANPNFGNVGFNGGINSAILRYDGAPAVEPTTNQSTSTQPLNET 303
Query: 297 NSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTAS 331
N VS P+PG P A +++A ++ +N S
Sbjct: 304 NLHPLVSTPVPGSPA---AGGVDKAINMAFNFNGS 335
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 144/367 (39%), Gaps = 41/367 (11%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
+T + P G ++ +++NG P P I D ++V + L + I W+G
Sbjct: 10 LTNAQVSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q+ +W DG + CPI G +F Y Q DQ G+++Y G G ++
Sbjct: 70 QQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPF-PDGLLINGRG------- 199
D TV+ DWY +V +L G PF D LING G
Sbjct: 130 NDPHASLYDIDNDDTVITLADWY----HVAAKL---GPRFPFGSDSTLINGLGRTTGIAP 182
Query: 200 WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQ 259
+ V G+ YRFR+ ++ + F I H+M ++E + +T ++ I Q
Sbjct: 183 SDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQ 242
Query: 260 TYSVLVTMDQAPQDYYIVVSSRFTPRVLT---TTAILHYSNSRRGVSGPIPGGPTTEIAW 316
YS ++ Q +Y+I + F +AIL Y + + PT
Sbjct: 243 RYSFVLDASQPVDNYWIRANPAFGNTGFAGGINSAILRYDGAPEIEPTSVQTTPTKP--- 299
Query: 317 SLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVP 376
LN+ +L P P P GS G + + NG + IN +FVP
Sbjct: 300 -LNEV-----DLHPLSPMPVP-GSPEPGGVDKPLNLVFN-----FNGTNFF-INDHTFVP 346
Query: 377 ADTPLKL 383
P+ L
Sbjct: 347 PSVPVLL 353
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 116/293 (39%), Gaps = 29/293 (9%)
Query: 40 IYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-ISWNGLQQRRNSWQDG 98
I P G + + NG PGP I A DNLII V N L I W+G++Q + DG
Sbjct: 79 ITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDG 138
Query: 99 VYGTT-CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXX 157
V G T CPI PG TY Q Q G+ +Y F G FG + I
Sbjct: 139 VPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLII--NGPATADYDE 195
Query: 158 XAGDFTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGR---------------GWNG 202
G + DW + + + G P + L+NG G
Sbjct: 196 DVG--VIFLQDWAHESVFEIWDTARLGAP-PALENTLMNGTNTFDCSASTDPNCVGGGKK 252
Query: 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYS 262
+ T G YR R+ NVG+ + F I H++ ++ + + T L I +GQ Y
Sbjct: 253 FELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYD 312
Query: 263 VLVTMDQAPQDYYIV----VSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPT 311
V+V + A +Y+I + T IL Y +S ++ P G T
Sbjct: 313 VIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS--IANPTSVGTT 363
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 437 HIDGYSFFVVGMDGGQW-TPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIR 495
H+ G+ FF+V + + + S ++NL + R + + AI LDN G W +
Sbjct: 466 HLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLH 525
Query: 496 -------SENWARQYLGQQFYLRV 512
SE A Q++ Q + V
Sbjct: 526 CHIAWHASEGLAMQFVESQSSIAV 549
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 116/293 (39%), Gaps = 29/293 (9%)
Query: 40 IYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-ISWNGLQQRRNSWQDG 98
I P G + + NG PGP I A DNLII V N L I W+G++Q + DG
Sbjct: 79 ITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDG 138
Query: 99 VYGTT-CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXX 157
V G T CPI PG TY Q Q G+ +Y F G FG + I
Sbjct: 139 VPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLII--NGPATADYDE 195
Query: 158 XAGDFTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGR---------------GWNG 202
G + DW + + + G P + L+NG G
Sbjct: 196 DVG--VIFLQDWAHESVFEIWDTARLGAP-PALENTLMNGTNTFDCSASTDPNCVGGGKK 252
Query: 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYS 262
+ T G YR R+ NVG+ + F I H++ ++ + + T L I +GQ Y
Sbjct: 253 FELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYD 312
Query: 263 VLVTMDQAPQDYYIV----VSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPT 311
V+V + A +Y+I + T IL Y +S ++ P G T
Sbjct: 313 VIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS--IANPTSVGTT 363
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 437 HIDGYSFFVVGMDGGQW-TPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIR 495
H+ G+ FF+V + + + S ++NL + R + + AI LDN G W +
Sbjct: 466 HLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLH 525
Query: 496 -------SENWARQYLGQQFYLRV 512
SE A Q++ Q + V
Sbjct: 526 CHIAWHASEGMAMQFVESQSSIAV 549
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/457 (25%), Positives = 175/457 (38%), Gaps = 76/457 (16%)
Query: 46 KQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQQRRNSWQDG-V 99
+ + G P I +D I+V + L + + I W+G Q + DG
Sbjct: 42 ARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPA 101
Query: 100 YGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXXXA 159
+ CPI P ++F Y Q G+Y+Y G G ++
Sbjct: 102 FVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVD 161
Query: 160 GDFTVLA-GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGY--------TFTVEPG 210
TV+ DWY S VL + P PD LING G N +V+ G
Sbjct: 162 DASTVITIADWYHSLSTVL--FPNPNKAPPAPDTTLINGLGRNSANPSAGQLAVVSVQSG 219
Query: 211 RTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQA 270
+ YRFRI + + F I GH M ++EV+G T +L I GQ YSV+V +QA
Sbjct: 220 KRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQA 279
Query: 271 PQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGG-----------PTTE--IAWS 317
+Y+I R P SN R G +G I PTT +
Sbjct: 280 VGNYWI----RANP-----------SNGRNGFTGGINSAIFRYQGAAVAEPTTSQNSGTA 324
Query: 318 LNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPA 377
LN+A I + P P G+ ++I R T A+ + IN F+P
Sbjct: 325 LNEANLIPLINPGAPGNPVPGGADINLNLRIGRNATTAD----------FTINGAPFIPP 374
Query: 378 DTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYH 437
P+ L + GV T+PN + +V++ + +EI + +H
Sbjct: 375 TVPVLLQ---ILSGV-------TNPN--DLLPGGAVISLPANQVIEISIPGGGN--HPFH 420
Query: 438 IDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQV 474
+ G++F VV TP S YN + V R +
Sbjct: 421 LHGHNFDVV------RTPGSSV-YNYVNPVRRDVVSI 450
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 16/245 (6%)
Query: 45 VKQQGILINGQFPGPQIDAVTNDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGVYGTT 103
VK++ +LING GP I A D + ++V N L I W+G+ Q+ + DG G T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVT 112
Query: 104 -CPIPP-GKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXXXAGD 161
CPIPP G TY +A+ Q G+ +Y F G G I+I G
Sbjct: 113 ECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPYDIDLGV 169
Query: 162 FTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYT-------FTVEPGRTYR 214
F + +YR+ ++ + PF D +LING N T T+ PG+ +R
Sbjct: 170 FPI-TDYYYRAADDLVH--FTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHR 226
Query: 215 FRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDY 274
RI N + H+M ++ + T +L + +GQ Y V++ +AP +Y
Sbjct: 227 LRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNY 286
Query: 275 YIVVS 279
+ V+
Sbjct: 287 WFNVT 291
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 16/245 (6%)
Query: 45 VKQQGILINGQFPGPQIDAVTNDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGVYGTT 103
VK++ +LING GP I A D + ++V N L I W+G+ Q+ + DG G T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVT 112
Query: 104 -CPIPP-GKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXXXAGD 161
CPIPP G TY +A+ Q G+ +Y F G G I+I G
Sbjct: 113 ECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPYDIDLGV 169
Query: 162 FTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYT-------FTVEPGRTYR 214
F + +YR+ ++ + PF D +LING N T T+ PG+ +R
Sbjct: 170 FPI-TDYYYRAADDLVH--FTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHR 226
Query: 215 FRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDY 274
RI N + H+M ++ + T +L + +GQ Y V++ +AP +Y
Sbjct: 227 LRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNY 286
Query: 275 YIVVS 279
+ V+
Sbjct: 287 WFNVT 291
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 16/245 (6%)
Query: 45 VKQQGILINGQFPGPQIDAVTNDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGVYGTT 103
VK++ +LING GP I A D + ++V N L I W+G+ Q+ + DG G T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVT 112
Query: 104 -CPIPP-GKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXXXAGD 161
CPIPP G TY +A+ Q G+ +Y F G G I+I G
Sbjct: 113 ECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPYDIDLGV 169
Query: 162 FTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYT-------FTVEPGRTYR 214
F + +YR+ ++ + PF D +LING N T T+ PG+ +R
Sbjct: 170 FPI-TDYYYRAADDLVH--FTQNNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHR 226
Query: 215 FRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDY 274
RI N + H+M ++ + T +L + +GQ Y V++ +AP +Y
Sbjct: 227 LRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNY 286
Query: 275 YIVVS 279
+ V+
Sbjct: 287 WFNVT 291
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 110/470 (23%), Positives = 173/470 (36%), Gaps = 87/470 (18%)
Query: 35 ITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-----ISWNGLQ 89
+T + G + +++NG PGP I D ++V N L + + W+G
Sbjct: 10 VTNAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFF 69
Query: 90 QRRNSWQDG-VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSR 148
Q+ +W DG + CPI G +F Y Q G+++Y G G ++
Sbjct: 70 QKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDP 129
Query: 149 XXXXXXXXXXAGDFTVLA-GDWYRSNHYVLRRLLDSGHNLPF----PDGLLINGRG---- 199
TV+ DWY + + N P D LING+G
Sbjct: 130 NDPSANLYDVDNLNTVITLTDWYHT----------AAQNGPAKPGGADATLINGQGRGPS 179
Query: 200 ---WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIH 256
+ +V G+ YRFR+ + + F I GH M +++V+ + + I+
Sbjct: 180 SPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIY 239
Query: 257 LGQTYSVLVTMDQAPQDYYIVVSSR-----FTPRVLTTTAILHYSNSRRGVSGPIPGGPT 311
Q YS ++ +QA +Y+I + FT + +AIL YS G + P
Sbjct: 240 AAQRYSFILNANQAVNNYWIRANPNQGNVGFTNGI--NSAILRYS----GAAATQPTTSQ 293
Query: 312 TEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLA-NSAPYMNGKQRYAIN 370
T L+Q TA P ++ + LA N A NG + ++
Sbjct: 294 TSSVQPLDQTNLHPLTATAVPGSP------------VAGGVNLAINQAFNFNGTNHF-VD 340
Query: 371 SVSFVPADTPL---------KLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREF 421
SFVP P+ AD V+ S+P+ N ++ TS A F
Sbjct: 341 GASFVPPTVPVLSQIVSGAQSAADLLASGLVY---SLPSDANIEISFPATSAAAGGPHPF 397
Query: 422 VEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARST 471
H+ G++F VV G T YN D + R T
Sbjct: 398 ---------------HLHGHAFAVVRSAG-------STTYNYNDPIFRDT 425
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 113/465 (24%), Positives = 173/465 (37%), Gaps = 52/465 (11%)
Query: 50 ILINGQFPGPQIDAVTNDNLIISVYNYLREPFL-ISWNGLQQRRNSWQDGV-YGTTCPIP 107
I NGQFP P I D + I + N + + ++GL Q + DGV + T CPI
Sbjct: 25 ITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIA 84
Query: 108 PGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXXXAGDFTVLAG 167
PG Y +G+Y+Y H G++ + ++
Sbjct: 85 PGSTMLYNFTVDYNVGTYWYHS----HTDGQYEDGMKGLFIIKDDSFPYDYDEELSLSLS 140
Query: 168 DWYRSNHYVLRRLLDSGHN----LPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLT 223
+WY L + S +N P P L++N T+ V+P TY RI NVG
Sbjct: 141 EWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTM--NLTWEVQPDTTYLLRIVNVGGF 198
Query: 224 TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFT 283
S F I+ H M +VE++G T +N L I + Q Y+VLV + D + +F
Sbjct: 199 VSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHT-KNDTDKNFAIMQKFD 257
Query: 284 PRVLTTT-AILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRP-NPQGSY 341
+L + L + + V PT N SI L +P + Y
Sbjct: 258 DTMLDVIPSDLQLNATSYMVYNKTAALPTQ------NYVDSIDNFLDDFYLQPYEKEAIY 311
Query: 342 HYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTS 401
I+ + + N NG N++++ K+P + T+ S
Sbjct: 312 GEPDHVITVDVVMDN---LKNGVNYAFFNNITYTAP----------KVPTLMTVLSSGDQ 358
Query: 402 PNWGNAY-LQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMD----------G 450
N Y T E VEIV N + +H+ G++F + D
Sbjct: 359 ANNSEIYGSNTHTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDRTYDDALGEVP 418
Query: 451 GQWTPASR---TRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492
+ P + Y +R R T V P+S I DN G+W
Sbjct: 419 HSFDPDNHPAFPEYPMR----RDTLYVRPQSNFVIRFKADNPGVW 459
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 111/253 (43%), Gaps = 21/253 (8%)
Query: 40 IYPLGV-KQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQD 97
I P GV K +L+N + GP I A DN+ ++V N L+ + W+GL+Q N + D
Sbjct: 88 IGPDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFND 147
Query: 98 GVYGTT-CPIPP-GKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXX 155
G G T CPIPP G TY +A Q G+ +Y F G G I+I
Sbjct: 148 GANGVTECPIPPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQI--DGPASLPY 204
Query: 156 XXXAGDFTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRG---------WNGYTFT 206
G F L +YRS ++ +G P D +L NG W Y T
Sbjct: 205 DIDLGVFP-LMDYYYRSADELVHFTQSNG--APPSDNVLFNGTARHPETGAGQW--YNVT 259
Query: 207 VEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVT 266
+ PG+ +R RI N + GH+M ++ + T ++L + +GQ Y V +
Sbjct: 260 LTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTID 319
Query: 267 MDQAPQDYYIVVS 279
+ +Y+ V+
Sbjct: 320 ANSPVGNYWFNVT 332
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQ-DGV-YGTTCPIPPGK 110
NGQ P P I + D++ ++V N P I W+G+ Q R +WQ DGV + T I PG
Sbjct: 28 NGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQ-RGTWQSDGVPHATQHAIEPGD 86
Query: 111 NFTYVLQAK 119
FTY +A+
Sbjct: 87 TFTYKFKAE 95
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 36/247 (14%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG P P+I+ D L I V N L+E I W+G+ + QDG PI G+
Sbjct: 76 NGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPD--QDG--SPHDPILAGEER 131
Query: 113 TYVLQA-KDQIGSYFYFPSFLFHKAAGAFGGIRIWSRXXXXXXXXXXAGDFTVLAGDWYR 171
Y + +D G+Y+Y P + + F G+ AG F + A
Sbjct: 132 IYRFEIPQDSAGTYWYHPHPHYTASKQVFMGL---------------AGAFVIKAKKDAL 176
Query: 172 SNHYVLRRLLDS----GHNLPFPDGLL---INGRG-----WNG-YTFTVEPGRTYRFRIS 218
S H + L+ S N P+ L +NGR NG + ++ R RI
Sbjct: 177 S-HLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIY 235
Query: 219 NVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVV 278
N +N RIQG LV +G ++ T ++ L V V +D AP+D +
Sbjct: 236 NATAARYLNLRIQGAKFILVGTDGG-LIEKTIYKEELFLSPASRVEVLID-APKDGNFKL 293
Query: 279 SSRFTPR 285
S + R
Sbjct: 294 ESAYYDR 300
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 42 PLGVK-QQGILIN--GQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDG 98
PL + Q+ L+ G FPGP + D + +++ N L EP + W+GL
Sbjct: 27 PLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGL-----PISPK 81
Query: 99 VYGTTCPIPPGKNFTYVLQA-KDQIGSYFYFPSFLFHKAAGAFGGI 143
V IPPG+++TY K+ G+++Y P A F G+
Sbjct: 82 VDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGL 127
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 44 GVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTT 103
G+ +G NG+ PGP + A D L I N P I ++G+ + + DG G
Sbjct: 51 GIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHR---ATMDGTPGIG 107
Query: 104 C-PIPPGKNFTYVLQAKDQIGSYFYF---PSFLFHKAAGAFGGIRIWSR 148
I PG++FTY A G++ Y H A G +GG + +
Sbjct: 108 AGSIAPGQSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPK 155
>pdb|3FZD|A Chain A, Mutation Of Asn28 Disrupts The Enzymatic Activity And
Dimeri Sars 3clpro
Length = 301
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T LAG W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 25 TTLAGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 26 SPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISW 85
+P + TY + G +G+L P I + +++ N L EP ++ W
Sbjct: 11 APVPPLIKEATYIEATASGYMAEGVL------NPTIILRRGQRVDMTLKNKLTEPTIVHW 64
Query: 86 NGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFP 129
+G +W + + + I PG+++ Y ++ G+Y Y P
Sbjct: 65 HGFDV---NWHNDAHPSFA-ITPGESYNYSFDVVNRAGTYLYHP 104
>pdb|2YY4|A Chain A, Crystal Structure Of Ms8104
pdb|2YY4|B Chain B, Crystal Structure Of Ms8104
Length = 316
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|3M3V|A Chain A, Sars-Cov Main Protease Triple Mutant StiA WITH TWO
N-Terminal Additional Residue (Gly-Ser)
pdb|3M3V|B Chain B, Sars-Cov Main Protease Triple Mutant StiA WITH TWO
N-Terminal Additional Residue (Gly-Ser)
Length = 308
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|2PWX|A Chain A, Crystal Structure Of G11a Mutant Of Sars-Cov 3c-Like
Protease
Length = 308
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|1WOF|A Chain A, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor N1
pdb|1WOF|B Chain B, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor N1
pdb|2AMD|A Chain A, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N9
pdb|2AMD|B Chain B, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N9
pdb|2AMQ|A Chain A, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N3
pdb|2AMQ|B Chain B, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N3
pdb|2D2D|A Chain A, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor I2
pdb|2D2D|B Chain B, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor I2
Length = 311
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 30 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 76
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 77 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 131
>pdb|2A5K|A Chain A, Crystal Structures Of Sars Coronavirus Main Peptidase
Inhibited By An Aza-Peptide Epoxide In Space Group
P212121
pdb|2A5K|B Chain B, Crystal Structures Of Sars Coronavirus Main Peptidase
Inhibited By An Aza-Peptide Epoxide In Space Group
P212121
pdb|2GT8|A Chain A, Crystal Structure Of Sars Coronavirus Main Peptidase (With
An Additional Ala At The N-Terminus Of Each Protomer) In
The Space Group P43212
pdb|2GTB|A Chain A, Crystal Structure Of Sars Coronavirus Main Peptidase (With
An Additional Ala At The N-Terminus Of Each Protomer)
Inhibited By An Aza-Peptide Epoxide In The Space Group
P43212
Length = 307
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 26 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 72
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 73 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 127
>pdb|3M3S|A Chain A, Crystal Structure Of Sars-Cov Main Protease Asn214ala
Mutant With Authorize N-Terminus
pdb|3M3S|B Chain B, Crystal Structure Of Sars-Cov Main Protease Asn214ala
Mutant With Authorize N-Terminus
Length = 306
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|2QC2|A Chain A, Crystal Structure Of Severe Acute Respiratory Syndrome
(Sars) 3c-Like Protease Asn214ala Mutant
pdb|2QC2|B Chain B, Crystal Structure Of Severe Acute Respiratory Syndrome
(Sars) 3c-Like Protease Asn214ala Mutant
Length = 308
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|3F9F|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9F|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9H|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
pdb|3F9H|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
Length = 308
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|3EA9|A Chain A, Crystal Structure Of Sars-Cov Main Protease Quadruple
Mutant StifA WITH ONE MOLECULE IN ONE ASYMMETRIC UNIT
pdb|3EAJ|A Chain A, Crystal Structure Of Sars-Cov Main Protease Quadruple
Mutant StifA WITH TWO MOLECULES IN ONE ASYMMETRIC UNIT
pdb|3EAJ|B Chain B, Crystal Structure Of Sars-Cov Main Protease Quadruple
Mutant StifA WITH TWO MOLECULES IN ONE ASYMMETRIC UNIT
Length = 306
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|1UJ1|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro)
pdb|1UJ1|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro)
pdb|1UK2|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph8.0
pdb|1UK2|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph8.0
pdb|1UK3|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph7.6
pdb|1UK3|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph7.6
pdb|1UK4|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) Complexed With An Inhibitor
pdb|1UK4|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) Complexed With An Inhibitor
pdb|2BX3|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(P43212)
pdb|2BX4|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(P21212)
pdb|2A5A|A Chain A, Crystal Structure Of Unbound Sars Coronavirus Main
Peptidase In The Space Group C2
pdb|2A5I|A Chain A, Crystal Structures Of Sars Coronavirus Main Peptidase
Inhibited By An Aza-Peptide Epoxide In The Space Group
C2
pdb|2C3S|A Chain A, Structure Of Sars Cov Main Proteinase At 1.9 A (Ph6.5)
pdb|1Z1I|A Chain A, Crystal Structure Of Native Sars Clpro
pdb|2GZ7|A Chain A, Structure-Based Drug Design And Structural Biology Study
Of Novel Nonpeptide Inhibitors Of Sars-Cov Main Protease
pdb|2GZ8|A Chain A, Structure-Based Drug Design And Structural Biology Study
Of Novel Nonpeptide Inhibitors Of Sars-Cov Main Protease
pdb|2GZ9|A Chain A, Structure-Based Drug Design And Structural Biology Study
Of Novel Nonpeptide Inhibitors Of Sars-Cov Main Protease
pdb|2GT7|A Chain A, Crystal Structure Of Sars Coronavirus Main Peptidase At Ph
6.0 In The Space Group P21
pdb|2GT7|B Chain B, Crystal Structure Of Sars Coronavirus Main Peptidase At Ph
6.0 In The Space Group P21
pdb|2H2Z|A Chain A, Crystal Structure Of Sars-Cov Main Protease With Authentic
N And C-Termini
pdb|2HOB|A Chain A, Crystal Structure Of Sars-Cov Main Protease With Authentic
N And C-Termini In Complex With A Michael Acceptor N3
pdb|2GX4|A Chain A, Crystal Structure Of Sars Coronavirus 3cl Protease
Inhibitor Complex
pdb|2Z3C|A Chain A, A Mechanistic View Of Enzyme Inhibition And Peptide
Hydrolysis In The Active Site Of The Sars-Cov 3c-Like
Peptidase
pdb|2Z3D|A Chain A, A Mechanistic View Of Enzyme Inhibition And Peptide
Hydrolysis In The Active Site Of The Sars-cov 3c-like
Peptidase
pdb|2Z3E|A Chain A, A Mechanistic View Of Enzyme Inhibition And Peptide
Hydrolysis In The Active Site Of The Sars-Cov 3c-Like
Peptidase
pdb|2DUC|A Chain A, Crystal Structure Of Sars Coronavirus Main
Proteinase(3clpro)
pdb|2DUC|B Chain B, Crystal Structure Of Sars Coronavirus Main
Proteinase(3clpro)
pdb|2Z94|A Chain A, Complex Structure Of Sars-cov 3c-like Protease With Tdt
pdb|2Z9G|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With Pma
pdb|2Z9J|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With Epdtc
pdb|2Z9J|B Chain B, Complex Structure Of Sars-Cov 3c-Like Protease With Epdtc
pdb|2Z9K|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1600
pdb|2Z9K|B Chain B, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1600
pdb|2Z9L|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1586
pdb|2Z9L|B Chain B, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1586
pdb|2V6N|A Chain A, Crystal Structures Of The Sars-Coronavirus Main Proteinase
Inactivated By Benzotriazole Compounds
pdb|2ZU4|A Chain A, Complex Structure Of Sars-Cov 3cl Protease With Tg-0204998
pdb|2ZU5|A Chain A, Complex Structure Of Sars-Cov 3cl Protease With Tg-0205486
pdb|3IWM|A Chain A, The Octameric Sars-Cov Main Protease
pdb|3IWM|B Chain B, The Octameric Sars-Cov Main Protease
pdb|3IWM|C Chain C, The Octameric Sars-Cov Main Protease
pdb|3IWM|D Chain D, The Octameric Sars-Cov Main Protease
pdb|3SN8|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Cm- Ff-H (Soaking)
pdb|3SNB|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Dsfdq-H (Soaking)
pdb|3SNC|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Nstsq-H (Soaking)
pdb|3SND|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Estlq-H (Cocrystallization)
pdb|3SND|B Chain B, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Estlq-H (Cocrystallization)
pdb|3SNE|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Estlq-H (Soaking)
pdb|3SZN|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Sg75
pdb|3TIT|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Sg81
pdb|3TIU|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha,Beta-Unsaturated Ethyl Ester
Inhibitor Sg82
pdb|3TNS|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor Sg83
pdb|3TNT|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor Sg85
pdb|3VB3|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease In Apo Form
pdb|3VB3|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease In Apo Form
pdb|3VB4|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With B4z
pdb|3VB4|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With B4z
pdb|3VB5|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With C4z
pdb|3VB5|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With C4z
pdb|3VB6|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With C6z
pdb|3VB6|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With C6z
pdb|3VB7|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With M4z
pdb|3VB7|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With M4z
pdb|3V3M|A Chain A, Severe Acute Respiratory Syndrome Coronavirus (sars-cov)
3cl Protease In Complex With
N-[(1r)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl)
Ethyl]-n-(4-tert-butylphenyl)furan-2-carboxamide
Inhibitor
Length = 306
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|3D62|A Chain A, Development Of Broad-Spectrum Halomethyl Ketone Inhibitors
Against Coronavirus Main Protease 3clpro
Length = 299
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 23 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 69
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 70 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 124
>pdb|3F9G|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
pdb|3F9G|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
Length = 303
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|3M3T|A Chain A, Sars-Cov Main Protease Monomeric Arg298ala Mutant With
N-Terminal Additional Residues (Gly-Ser)
Length = 308
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|3F9E|A Chain A, Crystal Structure Of The S139a Mutant Of Sars-Coronovirus
3c-Like Protease
Length = 308
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|3E91|A Chain A, Crystal Structure Of Sars-Cov Mpro Mutant In P21 At Ph6.9
pdb|3E91|B Chain B, Crystal Structure Of Sars-Cov Mpro Mutant In P21 At Ph6.9
pdb|3EA7|A Chain A, Crystal Structure Of Sars-Cov Main Protease Triple Mutant
StiA IN SPACE GROUP P21
pdb|3EA7|B Chain B, Crystal Structure Of Sars-Cov Main Protease Triple Mutant
StiA IN SPACE GROUP P21
pdb|3EA8|A Chain A, Crystal Structure Of Sars-Cov Main Protease Triple Mutant
StiA IN SPACE GROUP C2
Length = 306
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|3ATW|A Chain A, Structure-Based Design, Synthesis, Evaluation Of
Peptide-Mimetic Sars 3cl Protease Inhibitors
pdb|3ATW|B Chain B, Structure-Based Design, Synthesis, Evaluation Of
Peptide-Mimetic Sars 3cl Protease Inhibitors
pdb|3AVZ|A Chain A, Structure Of Sars 3cl Protease With Peptidic Aldehyde
Inhibitor Containing Cyclohexyl Side Chain
pdb|3AW0|A Chain A, Structure Of Sars 3cl Protease With Peptidic Aldehyde
Inhibitor
pdb|3AW1|A Chain A, Structure Of Sars 3cl Protease Auto-Proteolysis Resistant
Mutant In The Absent Of Inhibitor
pdb|3AW1|B Chain B, Structure Of Sars 3cl Protease Auto-Proteolysis Resistant
Mutant In The Absent Of Inhibitor
Length = 306
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|2OP9|A Chain A, Substrate Specificity Profiling And Identification Of A
New Class Of Inhibitor For The Major Protease Of The
Sars Coronavirus
pdb|2OP9|B Chain B, Substrate Specificity Profiling And Identification Of A
New Class Of Inhibitor For The Major Protease Of The
Sars Coronavirus
Length = 302
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 26 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 72
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 73 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 127
>pdb|3SNA|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Nsfsq-H (Soaking)
Length = 301
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|2QCY|A Chain A, Crystal Structure Of A Monomeric Form Of Severe Acute
Respiratory Syndrome (Sars) 3c-Like Protease Mutant
Length = 306
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|2VJ1|A Chain A, A Structural View Of The Inactivation Of The Sars-
Coronavirus Main Proteinase By Benzotriazole Esters
pdb|2VJ1|B Chain B, A Structural View Of The Inactivation Of The Sars-
Coronavirus Main Proteinase By Benzotriazole Esters
Length = 309
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 24 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 70
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 71 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 125
>pdb|2QIQ|A Chain A, Structure-Based Design And Synthesis And Biological
Evaluation Of Peptidomimetic Sars-3clpro Inhibitors
Length = 301
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI + ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK---SNHSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|2ALV|A Chain A, X-Ray Structural Analysis Of Sars Coronavirus 3cl
Proteinase In Complex With Designed Anti-Viral
Inhibitors
Length = 306
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|1Z1J|A Chain A, Crystal Structure Of Sars 3clpro C145a Mutant
pdb|1Z1J|B Chain B, Crystal Structure Of Sars 3clpro C145a Mutant
Length = 306
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|1Q2W|A Chain A, X-Ray Crystal Structure Of The Sars Coronavirus Main
Protease
pdb|1Q2W|B Chain B, X-Ray Crystal Structure Of The Sars Coronavirus Main
Protease
Length = 308
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 27 TTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 73
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 74 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 128
>pdb|2Q6G|A Chain A, Crystal Structure Of Sars-cov Main Protease H41a Mutant In
Complex With An N-terminal Substrate
pdb|2Q6G|B Chain B, Crystal Structure Of Sars-cov Main Protease H41a Mutant In
Complex With An N-terminal Substrate
Length = 306
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFP--DGLLINGRGWNGYTFTVEPGRTYRFRISNV 220
T L G W Y R ++ + ++ P + LLI R N ++F V+ G
Sbjct: 25 TTLNGLWLDDTVYCPRAVICTAEDMLNPNYEDLLI--RKSN-HSFLVQAG---------- 71
Query: 221 GLTTSINFRIQGHSMK----LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYY 275
++ R+ GHSM+ ++V+ S+ Y + I GQT+SVL + +P Y
Sbjct: 72 ----NVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 126
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNF 112
NG GP + + + +YN L E + W+GL+ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYVLQAKDQIGSYFYFP 129
+ L + ++ P
Sbjct: 98 SVTLNVDQPAATCWFHP 114
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQ 117
GPQ+ A D + I N P+ I +G+Q + T P PG+ TYV +
Sbjct: 790 GPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESS--------TVTPTLPGETLTYVWK 841
Query: 118 AKDQIGS 124
++ G+
Sbjct: 842 IPERSGA 848
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQ 117
GPQ+ A D + I N P+ I +G+Q + T P PG+ TYV +
Sbjct: 809 GPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESS--------TVTPTLPGETLTYVWK 860
Query: 118 AKDQIGS 124
++ G+
Sbjct: 861 IPERSGA 867
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,496,442
Number of Sequences: 62578
Number of extensions: 767962
Number of successful extensions: 2003
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1876
Number of HSP's gapped (non-prelim): 82
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)