Query 009127
Match_columns 543
No_of_seqs 222 out of 1706
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 20:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 6E-111 1E-115 896.3 61.1 529 5-537 8-536 (539)
2 PLN02991 oxidoreductase 100.0 8E-110 2E-114 882.7 60.8 515 22-538 22-536 (543)
3 PLN02354 copper ion binding / 100.0 5E-109 1E-113 882.3 61.1 538 1-540 1-546 (552)
4 PLN00044 multi-copper oxidase- 100.0 3E-108 6E-113 875.1 59.4 532 10-542 9-564 (596)
5 PLN02792 oxidoreductase 100.0 1E-107 2E-112 867.9 59.7 515 23-538 11-529 (536)
6 PLN02168 copper ion binding / 100.0 8E-107 2E-111 861.4 60.2 510 25-534 23-543 (545)
7 KOG1263 Multicopper oxidases [ 100.0 6E-100 1E-104 802.0 57.7 520 19-539 19-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 5.3E-99 1E-103 811.5 58.2 497 27-532 2-539 (539)
9 PLN02604 oxidoreductase 100.0 1.9E-96 4E-101 793.1 59.5 500 21-537 17-566 (566)
10 PLN02191 L-ascorbate oxidase 100.0 1.4E-96 3E-101 792.3 57.3 496 25-537 20-566 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.1E-95 2E-100 785.1 56.1 489 28-533 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 3.1E-93 6.7E-98 763.9 53.9 477 29-516 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 5.7E-80 1.2E-84 660.2 51.5 427 29-513 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 4.3E-79 9.3E-84 649.1 47.3 411 28-513 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 8.2E-77 1.8E-81 626.6 44.3 399 30-514 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.9E-61 4E-66 512.4 43.2 412 30-514 34-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 6.2E-49 1.3E-53 393.8 28.1 264 23-299 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.5E-36 3.2E-41 260.2 11.2 116 34-149 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.2E-30 4.7E-35 231.0 10.4 108 407-514 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 4.1E-26 8.9E-31 207.9 12.8 139 160-298 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 1.4E-18 3E-23 154.6 11.7 103 42-146 36-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.7E-15 3.8E-20 152.3 21.4 244 190-514 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.6 6.1E-16 1.3E-20 166.9 12.1 99 46-146 484-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.4 1.6E-12 3.5E-17 111.7 12.1 97 21-132 17-121 (135)
25 PRK10965 multicopper oxidase; 99.4 3E-11 6.5E-16 129.7 21.3 231 47-282 212-510 (523)
26 TIGR03389 laccase laccase, pla 99.3 1.8E-10 3.9E-15 125.0 22.5 234 48-283 167-508 (539)
27 PLN02835 oxidoreductase 99.3 1.3E-10 2.8E-15 125.3 20.8 245 47-296 191-512 (539)
28 PRK10883 FtsI repressor; Provi 99.3 1.1E-10 2.3E-15 124.2 19.3 221 45-283 207-456 (471)
29 COG2132 SufI Putative multicop 99.1 1.6E-09 3.6E-14 115.4 16.4 229 44-282 186-436 (451)
30 TIGR03388 ascorbase L-ascorbat 99.0 7.6E-09 1.6E-13 112.3 18.7 221 59-283 203-512 (541)
31 PLN02792 oxidoreductase 99.0 1.8E-08 3.9E-13 108.5 19.5 228 191-495 36-267 (536)
32 PLN02354 copper ion binding / 99.0 1.5E-08 3.1E-13 109.7 18.8 233 191-497 47-283 (552)
33 PLN02604 oxidoreductase 99.0 1.2E-08 2.7E-13 111.1 18.1 222 59-283 224-535 (566)
34 PLN02991 oxidoreductase 99.0 1.8E-08 3.8E-13 108.5 18.8 224 191-494 48-276 (543)
35 PLN02168 copper ion binding / 99.0 3.3E-08 7.2E-13 106.5 19.5 220 191-488 46-267 (545)
36 TIGR03390 ascorbOXfungal L-asc 98.9 7.4E-08 1.6E-12 104.4 20.5 235 191-489 28-266 (538)
37 PLN00044 multi-copper oxidase- 98.9 1.6E-07 3.5E-12 101.8 19.6 237 191-493 49-291 (596)
38 PF07731 Cu-oxidase_2: Multico 98.8 3.5E-08 7.6E-13 87.6 11.4 79 201-281 32-121 (138)
39 PLN02191 L-ascorbate oxidase 98.8 3E-07 6.4E-12 100.3 19.2 229 52-283 219-535 (574)
40 PF07732 Cu-oxidase_3: Multico 98.7 3E-08 6.5E-13 85.1 7.5 90 412-515 26-116 (117)
41 PRK02710 plastocyanin; Provisi 98.7 1.6E-07 3.4E-12 81.0 11.7 74 58-146 46-119 (119)
42 PF13473 Cupredoxin_1: Cupredo 98.5 1.9E-07 4.2E-12 78.5 6.9 70 59-145 35-104 (104)
43 KOG1263 Multicopper oxidases [ 98.5 7E-06 1.5E-10 88.3 20.1 228 191-497 48-286 (563)
44 TIGR02656 cyanin_plasto plasto 98.3 2E-06 4.3E-11 71.6 8.1 84 56-146 14-99 (99)
45 PF00394 Cu-oxidase: Multicopp 98.1 6.5E-06 1.4E-10 74.9 7.3 93 411-514 59-157 (159)
46 TIGR03095 rusti_cyanin rusticy 98.1 1.4E-05 3.1E-10 71.3 8.2 90 412-513 52-148 (148)
47 PF00127 Copper-bind: Copper b 98.0 9E-06 2E-10 67.7 5.1 79 56-146 14-99 (99)
48 PRK02888 nitrous-oxide reducta 98.0 2.6E-05 5.6E-10 83.7 9.5 98 39-148 533-635 (635)
49 TIGR02657 amicyanin amicyanin. 97.9 7.5E-05 1.6E-09 59.9 8.3 73 58-146 10-83 (83)
50 PF06525 SoxE: Sulfocyanin (So 97.7 0.00034 7.4E-09 64.1 10.4 100 49-149 75-189 (196)
51 TIGR02656 cyanin_plasto plasto 97.6 0.0002 4.3E-09 59.6 7.5 83 412-513 17-99 (99)
52 TIGR03094 sulfo_cyanin sulfocy 97.6 0.00056 1.2E-08 61.3 10.6 96 50-149 75-188 (195)
53 COG3794 PetE Plastocyanin [Ene 97.5 0.00039 8.4E-09 59.8 8.0 75 59-147 54-128 (128)
54 TIGR02375 pseudoazurin pseudoa 97.5 0.00036 7.8E-09 59.4 7.7 76 58-149 14-90 (116)
55 TIGR03096 nitroso_cyanin nitro 97.3 0.00092 2E-08 58.0 7.6 59 413-498 62-120 (135)
56 TIGR03102 halo_cynanin halocya 97.2 0.0022 4.7E-08 54.5 8.3 75 56-146 39-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.7 0.0041 8.8E-08 52.1 6.4 67 413-510 36-102 (104)
58 PF00127 Copper-bind: Copper b 96.5 0.016 3.5E-07 48.0 8.6 82 412-513 17-99 (99)
59 PRK02710 plastocyanin; Provisi 96.1 0.022 4.7E-07 49.0 7.3 72 413-513 48-119 (119)
60 PRK10378 inactive ferrous ion 96.0 0.061 1.3E-06 55.2 11.3 78 55-149 40-119 (375)
61 PRK02888 nitrous-oxide reducta 96.0 0.024 5.1E-07 61.5 8.5 75 412-513 555-633 (635)
62 PF06525 SoxE: Sulfocyanin (So 95.5 0.12 2.5E-06 47.8 9.9 89 191-281 74-172 (196)
63 COG4454 Uncharacterized copper 95.3 0.18 3.8E-06 44.6 9.8 89 55-147 59-158 (158)
64 TIGR02375 pseudoazurin pseudoa 95.2 0.1 2.2E-06 44.5 7.9 75 413-516 16-90 (116)
65 COG4454 Uncharacterized copper 94.9 0.074 1.6E-06 46.9 6.1 93 414-513 65-157 (158)
66 TIGR02657 amicyanin amicyanin. 94.8 0.16 3.5E-06 40.5 7.6 72 413-513 12-83 (83)
67 PF00116 COX2: Cytochrome C ox 94.6 0.15 3.3E-06 43.8 7.6 74 58-145 45-119 (120)
68 TIGR02695 azurin azurin. Azuri 94.4 0.24 5.1E-06 42.3 7.9 87 57-144 14-124 (125)
69 PF00116 COX2: Cytochrome C ox 94.1 1.1 2.4E-05 38.5 11.7 64 202-284 45-108 (120)
70 TIGR03102 halo_cynanin halocya 92.9 0.59 1.3E-05 39.8 7.9 73 413-513 43-115 (115)
71 TIGR02866 CoxB cytochrome c ox 89.5 1.1 2.4E-05 42.2 7.0 77 412-516 117-194 (201)
72 TIGR02866 CoxB cytochrome c ox 88.6 3.1 6.8E-05 39.2 9.4 78 58-149 116-194 (201)
73 COG4263 NosZ Nitrous oxide red 87.4 0.78 1.7E-05 47.4 4.6 79 59-147 558-637 (637)
74 PF12690 BsuPI: Intracellular 87.3 6.4 0.00014 31.2 8.9 65 213-278 4-82 (82)
75 COG3794 PetE Plastocyanin [Ene 86.2 2.9 6.3E-05 36.2 6.9 74 413-514 55-128 (128)
76 COG1622 CyoA Heme/copper-type 86.1 3.4 7.4E-05 40.2 8.1 78 59-150 137-215 (247)
77 COG1622 CyoA Heme/copper-type 80.9 4.6 0.0001 39.3 6.7 78 412-517 137-215 (247)
78 PF12690 BsuPI: Intracellular 79.3 4.1 8.9E-05 32.4 4.8 57 60-127 17-80 (82)
79 TIGR02695 azurin azurin. Azuri 75.8 18 0.00039 31.0 7.9 79 202-280 15-112 (125)
80 TIGR03094 sulfo_cyanin sulfocy 74.5 22 0.00048 32.5 8.5 95 413-515 86-187 (195)
81 PF04744 Monooxygenase_B: Mono 69.5 23 0.00049 36.2 8.2 70 45-120 249-335 (381)
82 TIGR03079 CH4_NH3mon_ox_B meth 68.5 41 0.00089 34.3 9.7 23 98-120 331-354 (399)
83 PRK10378 inactive ferrous ion 66.9 31 0.00068 35.7 8.9 86 192-298 33-118 (375)
84 COG3354 FlaG Putative archaeal 65.5 96 0.0021 27.3 10.7 83 191-280 51-142 (154)
85 PF07705 CARDB: CARDB; InterP 64.0 63 0.0014 25.8 8.9 66 206-280 14-83 (101)
86 PF05506 DUF756: Domain of unk 63.6 33 0.00072 27.4 6.8 64 57-128 7-73 (89)
87 PF10633 NPCBM_assoc: NPCBM-as 63.0 37 0.00079 26.3 6.8 67 207-280 1-75 (78)
88 PF14344 DUF4397: Domain of un 62.5 95 0.0021 26.2 10.0 21 214-234 3-24 (122)
89 PF14481 Fimbrial_PilY2: Type 61.0 4.5 9.8E-05 33.2 1.2 85 1-87 1-96 (118)
90 PF04151 PPC: Bacterial pre-pe 60.6 49 0.0011 24.9 7.0 66 202-279 4-69 (70)
91 MTH00047 COX2 cytochrome c oxi 59.6 44 0.00096 31.2 7.8 76 413-516 117-193 (194)
92 MTH00140 COX2 cytochrome c oxi 59.2 29 0.00062 33.4 6.7 77 412-516 140-217 (228)
93 COG2967 ApaG Uncharacterized p 54.8 15 0.00032 31.1 3.2 66 71-150 34-107 (126)
94 PTZ00047 cytochrome c oxidase 54.7 48 0.001 29.9 6.7 75 414-516 75-150 (162)
95 KOG4063 Major epididymal secre 54.2 86 0.0019 27.8 8.0 60 60-119 49-123 (158)
96 PF01835 A2M_N: MG2 domain; I 53.1 25 0.00053 28.6 4.5 69 207-281 11-86 (99)
97 MTH00098 COX2 cytochrome c oxi 53.1 39 0.00084 32.5 6.4 77 412-516 140-217 (227)
98 PRK05461 apaG CO2+/MG2+ efflux 52.4 17 0.00037 31.5 3.5 21 96-116 66-86 (127)
99 PF14874 PapD-like: Flagellar- 52.3 1.1E+02 0.0023 24.8 8.3 58 206-275 15-81 (102)
100 MTH00129 COX2 cytochrome c oxi 50.6 41 0.00089 32.4 6.2 77 412-516 140-217 (230)
101 MTH00047 COX2 cytochrome c oxi 50.2 1.2E+02 0.0026 28.4 9.0 61 203-282 116-176 (194)
102 PF05938 Self-incomp_S1: Plant 48.5 73 0.0016 26.5 6.8 71 70-149 2-72 (110)
103 MTH00140 COX2 cytochrome c oxi 45.2 1.1E+02 0.0024 29.3 8.3 62 202-282 139-200 (228)
104 TIGR01433 CyoA cytochrome o ub 44.2 57 0.0012 31.3 6.1 76 413-516 140-216 (226)
105 PF11142 DUF2917: Protein of u 42.4 76 0.0016 23.7 5.2 47 205-263 2-48 (63)
106 COG1188 Ribosome-associated he 39.9 21 0.00045 29.4 1.9 34 50-83 36-69 (100)
107 PF11614 FixG_C: IG-like fold 39.1 1.1E+02 0.0025 25.6 6.6 48 212-268 34-83 (118)
108 MTH00008 COX2 cytochrome c oxi 38.5 1.1E+02 0.0025 29.3 7.2 77 412-516 140-217 (228)
109 PF14392 zf-CCHC_4: Zinc knuck 38.0 63 0.0014 22.7 4.0 40 465-504 5-45 (49)
110 MTH00185 COX2 cytochrome c oxi 37.8 1.2E+02 0.0026 29.2 7.2 77 412-516 140-217 (230)
111 PF07691 PA14: PA14 domain; I 37.2 1.4E+02 0.0029 25.8 7.1 61 204-269 53-120 (145)
112 smart00758 PA14 domain in bact 35.6 2.3E+02 0.0051 24.1 8.3 62 205-271 52-114 (136)
113 MTH00076 COX2 cytochrome c oxi 35.1 90 0.002 30.0 5.9 77 412-516 140-217 (228)
114 PF14524 Wzt_C: Wzt C-terminal 34.4 1.4E+02 0.0031 25.4 6.7 83 193-280 19-107 (142)
115 PF04379 DUF525: Protein of un 33.8 1.1E+02 0.0024 24.7 5.2 49 212-263 15-67 (90)
116 MTH00117 COX2 cytochrome c oxi 33.0 1.6E+02 0.0035 28.3 7.2 77 412-516 140-217 (227)
117 PRK13254 cytochrome c-type bio 32.9 53 0.0011 29.3 3.6 73 23-100 28-101 (148)
118 PF02102 Peptidase_M35: Deuter 32.6 15 0.00032 37.8 0.0 45 80-129 77-122 (359)
119 cd00916 Npc2_like Niemann-Pick 32.0 1.9E+02 0.0041 24.7 6.8 61 59-119 22-92 (123)
120 PRK13202 ureB urease subunit b 31.7 1.4E+02 0.0031 24.6 5.5 59 60-118 12-84 (104)
121 TIGR01432 QOXA cytochrome aa3 30.9 1.1E+02 0.0024 29.2 5.6 75 414-516 132-207 (217)
122 PF14451 Ub-Mut7C: Mut7-C ubiq 28.7 46 0.00099 26.3 2.2 28 45-72 47-74 (81)
123 MTH00008 COX2 cytochrome c oxi 28.7 1.8E+02 0.0039 28.0 6.7 61 202-281 139-199 (228)
124 cd00918 Der-p2_like Several gr 28.2 2.3E+02 0.0051 24.2 6.6 62 58-119 19-88 (120)
125 PF10989 DUF2808: Protein of u 28.0 66 0.0014 28.5 3.4 28 103-130 96-126 (146)
126 COG5633 Predicted periplasmic 27.7 2.6E+02 0.0056 23.8 6.4 16 1-18 1-16 (123)
127 PTZ00047 cytochrome c oxidase 27.5 4.7E+02 0.01 23.7 8.9 61 203-282 73-133 (162)
128 MTH00023 COX2 cytochrome c oxi 27.5 2.2E+02 0.0048 27.6 7.2 77 412-516 151-228 (240)
129 COG1470 Predicted membrane pro 26.6 8.2E+02 0.018 26.2 15.6 177 61-281 278-468 (513)
130 PF10989 DUF2808: Protein of u 26.5 65 0.0014 28.6 3.0 25 474-498 99-127 (146)
131 PRK05461 apaG CO2+/MG2+ efflux 26.4 1.9E+02 0.004 25.1 5.7 49 212-263 32-84 (127)
132 PRK10301 hypothetical protein; 26.2 3E+02 0.0065 23.6 7.0 29 66-100 85-114 (124)
133 TIGR01433 CyoA cytochrome o ub 24.4 3.8E+02 0.0081 25.7 8.0 62 203-283 139-200 (226)
134 KOG1554 COP9 signalosome, subu 23.6 57 0.0012 32.0 2.2 26 124-149 134-174 (347)
135 MTH00098 COX2 cytochrome c oxi 23.2 4.3E+02 0.0093 25.4 8.2 60 203-281 140-199 (227)
136 MTH00129 COX2 cytochrome c oxi 23.0 2.2E+02 0.0047 27.4 6.2 60 203-281 140-199 (230)
137 MTH00051 COX2 cytochrome c oxi 22.7 2.5E+02 0.0053 27.1 6.5 61 202-281 143-203 (234)
138 PF14016 DUF4232: Protein of u 22.5 4.3E+02 0.0093 22.6 7.5 54 212-268 21-81 (131)
139 TIGR02988 YaaA_near_RecF S4 do 22.5 49 0.0011 24.1 1.2 22 50-71 36-58 (59)
140 MTH00051 COX2 cytochrome c oxi 21.8 3.3E+02 0.0071 26.3 7.1 77 412-516 144-221 (234)
141 TIGR01432 QOXA cytochrome aa3 21.8 4.2E+02 0.009 25.2 7.8 61 203-282 130-190 (217)
142 PRK09918 putative fimbrial cha 21.6 4.9E+02 0.011 25.0 8.3 14 253-266 187-200 (230)
143 TIGR00192 urease_beta urease, 21.5 3E+02 0.0064 22.8 5.5 58 61-118 13-83 (101)
144 COG4633 Plastocyanin domain co 21.4 5.7E+02 0.012 24.5 8.1 88 42-150 80-172 (272)
145 PRK13203 ureB urease subunit b 20.8 3.1E+02 0.0067 22.7 5.5 59 60-118 12-83 (102)
146 MTH00038 COX2 cytochrome c oxi 20.8 3.4E+02 0.0074 26.0 7.0 77 412-516 140-217 (229)
147 PRK09918 putative fimbrial cha 20.7 3.5E+02 0.0075 26.0 7.1 60 202-266 75-134 (230)
148 PRK13202 ureB urease subunit b 20.5 4.1E+02 0.009 22.0 6.2 64 203-267 11-84 (104)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=5.6e-111 Score=896.27 Aligned_cols=529 Identities=62% Similarity=1.131 Sum_probs=428.3
Q ss_pred hHHHHHHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceee
Q 009127 5 RVLCSLIALLLSLAVHGVYGDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLIS 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH 84 (543)
-|++++++.+.+++ ...+.+++++|+|+|++..+++||+++.+|+||||+|||+||+++||+|+|+|+|+|+++|+||
T Consensus 8 ~~~~~~~~~~~~~~--~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiH 85 (539)
T PLN02835 8 HLLLGVLAVLSSVS--LVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLT 85 (539)
T ss_pred HHHHHHHHHHHHHh--hhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEE
Confidence 34555555543333 3344568899999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEE
Q 009127 85 WNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTV 164 (543)
Q Consensus 85 ~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l 164 (543)
|||++|++++++||++++||||+||++|+|+|++++++||||||||++.|+.+||+|+|||++++..+.++..+|+|+++
T Consensus 86 WHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l 165 (539)
T PLN02835 86 WNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTL 165 (539)
T ss_pred eCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEE
Confidence 99999999999999999999999999999999986689999999999999999999999998765555566678999999
Q ss_pred EeeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcc
Q 009127 165 LAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSH 244 (543)
Q Consensus 165 ~~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~ 244 (543)
+++||++.....+...+..+...+.++.+||||+. .+.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+
T Consensus 166 ~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~--~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~ 243 (539)
T PLN02835 166 LVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQT--QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSH 243 (539)
T ss_pred EeeccccCCHHHHHHHhhcCCCCCCCceEEEcccc--CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCcc
Confidence 99999999877666556566666788999999999 8999999999999999999999999999999999999999999
Q ss_pred ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCcccccccccccc
Q 009127 245 TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSI 324 (543)
Q Consensus 245 ~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 324 (543)
++|..++++.|++||||||+|++++.+|+|||++...+........|+|+|.++..+.+.++|..|..+.......+...
T Consensus 244 v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 323 (539)
T PLN02835 244 TIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTY 323 (539)
T ss_pred CCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhcc
Confidence 99999999999999999999999988899999986544333467899999988653332233332211111122222222
Q ss_pred ccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCC
Q 009127 325 RWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNW 404 (543)
Q Consensus 325 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~ 404 (543)
...+.+....+.+...........++++.+.......+|...|.|||++|..|+.|++++.+.+.++.|+.++....+..
T Consensus 324 ~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~ 403 (539)
T PLN02835 324 RWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSG 403 (539)
T ss_pred ccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCC
Confidence 22233222223322211111223345554432222234667899999999999999987766656666664433333333
Q ss_pred CCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEE
Q 009127 405 GNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYM 484 (543)
Q Consensus 405 ~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf 484 (543)
...+.+++++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.+|++|||+.|+++||++|||
T Consensus 404 ~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF 483 (539)
T PLN02835 404 GPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILV 483 (539)
T ss_pred CccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEE
Confidence 33455688899999999999999998889999999999999999999897655556788999999999999999999999
Q ss_pred EecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcchhccccCC
Q 009127 485 ALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNALLCGRARG 537 (543)
Q Consensus 485 ~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~ 537 (543)
++||||.|+|||||++|+..||+++|+|.++.+....+.++|++++.||..++
T Consensus 484 ~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 484 SLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred ECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 99999999999999999999999999999987777778899999999998777
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=8.3e-110 Score=882.67 Aligned_cols=515 Identities=69% Similarity=1.214 Sum_probs=425.9
Q ss_pred cccCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC
Q 009127 22 VYGDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG 101 (543)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~ 101 (543)
..+.+++++|+|+|++..+++||+++.+++||||+|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||+++
T Consensus 22 ~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~ 101 (543)
T PLN02991 22 VAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG 101 (543)
T ss_pred hhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHh
Q 009127 102 TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLL 181 (543)
Q Consensus 102 tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 181 (543)
+||||+||++|+|+|++++|+||||||||.+.|+.+||+|+|||++++..+.|+..+++|++++|+||+++....+...+
T Consensus 102 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~ 181 (543)
T PLN02991 102 TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQL 181 (543)
T ss_pred CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHh
Confidence 99999999999999999768999999999999999999999999998766666666789999999999999876665555
Q ss_pred ccCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeE
Q 009127 182 DSGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTY 261 (543)
Q Consensus 182 ~~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~ 261 (543)
..+...+.+|.+|||||.. .+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|..++++.|++||||
T Consensus 182 ~~~~~~~~~d~~liNG~~~-~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRy 260 (543)
T PLN02991 182 DNGGKLPLPDGILINGRGS-GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSY 260 (543)
T ss_pred hcCCCCCCCCEEEEccCCC-CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEE
Confidence 5555567889999999973 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 009127 262 SVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSY 341 (543)
Q Consensus 262 dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~ 341 (543)
||+|++++++|+|||++...+........|||+|+++..+...+.|..|. ...+..++.......+.+....+.|...+
T Consensus 261 dvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~~~~ 339 (543)
T PLN02991 261 SVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQGSY 339 (543)
T ss_pred EEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCCccc
Confidence 99999999899999999865444446789999999875322223333221 11122222112223333322233333222
Q ss_pred CcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcE
Q 009127 342 HYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREF 421 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ 421 (543)
......+++.+.+.......++...|.|||.+|..|+.|+|++.+..++++|+.+.+.+.|.........+++.++.|++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 419 (543)
T PLN02991 340 HYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAF 419 (543)
T ss_pred cccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCE
Confidence 22223344444443211112456789999999999999999887777778877654444444333445577888999999
Q ss_pred EEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhh
Q 009127 422 VEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWAR 501 (543)
Q Consensus 422 v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H 501 (543)
|||+|+|.+...||||||||+||||++|.|.|++.+...||+.||++|||+.||++||++|||++||||.|+|||||..|
T Consensus 420 VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h 499 (543)
T PLN02991 420 VEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWER 499 (543)
T ss_pred EEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCcccc
Confidence 99999999888999999999999999999999876666799999999999999999999999999999999999999999
Q ss_pred hhcccEEEEEEecCCCCCCCcCCCCCcchhccccCCC
Q 009127 502 QYLGQQFYLRVYSPANSWRDELPIPKNALLCGRARGR 538 (543)
Q Consensus 502 ed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~ 538 (543)
+..||.+.+.|.++++..+.+.++|++.++||..++.
T Consensus 500 ~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~~ 536 (543)
T PLN02991 500 QYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATGH 536 (543)
T ss_pred ccccEEEEEEecCCCCccccccCCCcccCccccCCCC
Confidence 9999999999999888777788999999999987764
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=5.1e-109 Score=882.26 Aligned_cols=538 Identities=57% Similarity=1.037 Sum_probs=430.6
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCC
Q 009127 1 MRDSRVLCSLIALLLSLAVHGVYGDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREP 80 (543)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~ 80 (543)
|-..|+++++++++++.++.+. +.+++++|+|+|++...++||+.+.+++||||+|||+|++++||+|+|+|+|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ 79 (552)
T PLN02354 1 MMGGRLLAVLLCLAAAVALVVR-AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEP 79 (552)
T ss_pred CchHHHHHHHHHHHHHHHHhhh-ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCC
Confidence 4556888777777755554333 345789999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCC
Q 009127 81 FLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAG 160 (543)
Q Consensus 81 ~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~ 160 (543)
++|||||++|++++++||+++|||||+||++|+|+|++.+++||||||||.+.|+.+||+|+|||+++...+.+|+.+++
T Consensus 80 ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~ 159 (552)
T PLN02354 80 FLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPED 159 (552)
T ss_pred cccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCc
Confidence 99999999999999999999999999999999999998668999999999999999999999999998766667766789
Q ss_pred ceEEEeeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCC-----CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCee
Q 009127 161 DFTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGW-----NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSM 235 (543)
Q Consensus 161 e~~l~~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~-----~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~ 235 (543)
|++++++||+++....+...+..+...+.++.+||||+.. ..+.++|++||+|||||||+|....+.|+|+||+|
T Consensus 160 e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~ 239 (552)
T PLN02354 160 DYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKM 239 (552)
T ss_pred eEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceE
Confidence 9999999999998777666666565456689999999962 24789999999999999999999999999999999
Q ss_pred EEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCccc
Q 009127 236 KLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIA 315 (543)
Q Consensus 236 ~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~ 315 (543)
+|||+||.+++|..++++.|++||||||+|++++.+|+|||++...+........|+|+|.++..+.+...|..+. ...
T Consensus 240 tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~-~~~ 318 (552)
T PLN02354 240 KLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPV-GWA 318 (552)
T ss_pred EEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCc-ccc
Confidence 9999999999999999999999999999999998899999999864444446789999998875432222222221 111
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCC-Ccccc
Q 009127 316 WSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKI-PGVFT 394 (543)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~-~~~~~ 394 (543)
+..........++.+....+.+..........+++++.+.......++...|.|||++|..|+.|+|.+.+.++ .+.++
T Consensus 319 ~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~ 398 (552)
T PLN02354 319 WSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFK 398 (552)
T ss_pred cchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccc
Confidence 11222222222233222222222211111233455555543221234567899999999999999987765433 24444
Q ss_pred cCCCCCC-CC-CCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeE
Q 009127 395 LGSMPTS-PN-WGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTT 472 (543)
Q Consensus 395 ~~~~~~~-p~-~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv 472 (543)
.+..+.. |. ......+.+++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+
T Consensus 399 ~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv 478 (552)
T PLN02354 399 YDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTV 478 (552)
T ss_pred cCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceE
Confidence 3311121 11 112334568889999999999999998889999999999999999999998766667899999999999
Q ss_pred EeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcchhccccCCCCC
Q 009127 473 QVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNALLCGRARGRHT 540 (543)
Q Consensus 473 ~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~~~ 540 (543)
.||++||++|||++||||.|+|||||..|+..||.+.+.|.++.+..+...++|++.+.|+..++...
T Consensus 479 ~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~~ 546 (552)
T PLN02354 479 QVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLPK 546 (552)
T ss_pred EeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCCCC
Confidence 99999999999999999999999999999999999999998877666666678999999998887653
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3e-108 Score=875.09 Aligned_cols=532 Identities=51% Similarity=0.907 Sum_probs=425.7
Q ss_pred HHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCC--eeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCc
Q 009127 10 LIALLLSLAVHGVYGDSPYRFFTWKITYGDIYPLG--VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNG 87 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG 87 (543)
+++.+++++.+.+.|.+++++|+|+|++..+++|| ..+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHG 88 (596)
T PLN00044 9 LLAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHG 88 (596)
T ss_pred HHHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECC
Confidence 34444445555566778899999999999999999 5568999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCC-CceEEEe
Q 009127 88 LQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPA-GDFTVLA 166 (543)
Q Consensus 88 ~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~ 166 (543)
++|+.++|+||+++|||||+||++|+|+|++++|+||||||||++.|+.+||+|+|||++++..+.||..++ +|.+++|
T Consensus 89 l~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l 168 (596)
T PLN00044 89 VQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFI 168 (596)
T ss_pred ccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEe
Confidence 999999999999889999999999999999977899999999999999999999999999876666665434 7999999
Q ss_pred eeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCC------------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCe
Q 009127 167 GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGW------------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHS 234 (543)
Q Consensus 167 ~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~------------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~ 234 (543)
+||++.+..++...+..|.....++.++|||++. ..+.++|++|++|||||||++..+.+.|+|+||+
T Consensus 169 ~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~ 248 (596)
T PLN00044 169 ADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHN 248 (596)
T ss_pred cccccCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCE
Confidence 9999998776665666565556789999999863 1247999999999999999999999999999999
Q ss_pred eEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCc-ceEEEEeeccC----CCccceEEEEEecCCCCCCCCCCCCC
Q 009127 235 MKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQ-DYYIVVSSRFT----PRVLTTTAILHYSNSRRGVSGPIPGG 309 (543)
Q Consensus 235 ~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~----~~~~~~~~il~y~~~~~~~~~~~p~~ 309 (543)
|+||++||.+++|+.+++|.|++||||||+|++++.++ +|||++...+. .+...+.|||+|.++......+.|..
T Consensus 249 mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~ 328 (596)
T PLN00044 249 LLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDA 328 (596)
T ss_pred EEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999998765 89999864321 24467889999988653222223332
Q ss_pred C--CCccccccccccccccccCCCCCCCCCCCCCCcccccceEEEEEecc-CCCcCCeEEEEEcCeeecCCCCchhhhcc
Q 009127 310 P--TTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANS-APYMNGKQRYAINSVSFVPADTPLKLADY 386 (543)
Q Consensus 310 p--~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~iNg~~f~~~~~p~~~~~~ 386 (543)
| ..+..++.+....+..+.......+.|.+........+.+.+.+... .....|+..|+|||++|..|+.|++++.+
T Consensus 329 p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~ 408 (596)
T PLN00044 329 PDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQI 408 (596)
T ss_pred CcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhh
Confidence 2 12222222222233322222222233332221111222222222110 01112567899999999999999998877
Q ss_pred cCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCC
Q 009127 387 FKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDT 466 (543)
Q Consensus 387 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p 466 (543)
.++.++|+.+ +++.|........+.++.+++|++|||+|+|.....||||||||+|+||++|.|.|++.+...||+.||
T Consensus 409 ~~~~gv~~~~-fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP 487 (596)
T PLN00044 409 FNVPGVFKLD-FPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDG 487 (596)
T ss_pred ccCCCcccCC-CCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCC
Confidence 7777877654 344333333334678899999999999999987779999999999999999999999877778999999
Q ss_pred CcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCC-CCCcCCCCCcchhccccCCCCCCC
Q 009127 467 VARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANS-WRDELPIPKNALLCGRARGRHTRP 542 (543)
Q Consensus 467 ~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~-~~~~~~~p~~~~~c~~~~~~~~~~ 542 (543)
++|||+.||++||++|||++||||.|++||||+.|++.||++.|.|.++.+. .+.+.++|++.+.||..+++..++
T Consensus 488 p~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~~~ 564 (596)
T PLN00044 488 VARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQKEQ 564 (596)
T ss_pred CccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCCCC
Confidence 9999999999999999999999999999999999999999999999987754 556788999999999988877654
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.1e-107 Score=867.91 Aligned_cols=515 Identities=64% Similarity=1.120 Sum_probs=423.1
Q ss_pred ccCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCC
Q 009127 23 YGDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGT 102 (543)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~t 102 (543)
...+++.+|+|+|++...++||+.+++++||||+|||+|++++||+|+|+|+|+|+++++|||||++|++++|+||++++
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhc
Q 009127 103 TCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLD 182 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 182 (543)
||||+||++|+|+|++++|+||||||||.+.|+.+||+|+|||++++..+.+++.+++|++++++||++.....+...+.
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999997789999999999999999999999998866555666677899999999999988766665555
Q ss_pred cCCCCC-CCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCe
Q 009127 183 SGHNLP-FPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQT 260 (543)
Q Consensus 183 ~g~~~~-~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR 260 (543)
.+...+ .+|.+||||++. ..+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|+||||
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqR 250 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQT 250 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCce
Confidence 554333 789999999963 246799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCC-CCccccccccccccccccCCCCCCCCCCC
Q 009127 261 YSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGP-TTEIAWSLNQARSIRWNLTASGPRPNPQG 339 (543)
Q Consensus 261 ~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 339 (543)
|||+|++++.+|+|||++...+........|||+|.++..... ..|..| ..+..+........+..+.+..+.+.|.+
T Consensus 251 ydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 329 (536)
T PLN02792 251 YSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQG 329 (536)
T ss_pred EEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCc
Confidence 9999999988899999998754434467889999988653211 111111 12222222222222333332223334433
Q ss_pred CCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCC-CCCccceeEEecCC
Q 009127 340 SYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNW-GNAYLQTSVMAANF 418 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~ 418 (543)
........+++++.+.......++...|+|||.+|..|++|+|++.++++.++++.+.+++.|.. +....++.++.++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~ 409 (536)
T PLN02792 330 SYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHH 409 (536)
T ss_pred ccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCC
Confidence 32222234455554433222233567899999999999999998877666677765444443332 22334678889999
Q ss_pred CcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecc
Q 009127 419 REFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSEN 498 (543)
Q Consensus 419 g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHi 498 (543)
|++|||+|+|.....||||||||+||||++|.|.|++.+...||+.||++||||.|+++||++|||++||||.|+||||+
T Consensus 410 ~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~ 489 (536)
T PLN02792 410 NAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQF 489 (536)
T ss_pred CCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcc
Confidence 99999999998888999999999999999999999887677899999999999999999999999999999999999999
Q ss_pred hhhhhcccEEEEEEecCCCCCCCcCCCCCcchhccccCCC
Q 009127 499 WARQYLGQQFYLRVYSPANSWRDELPIPKNALLCGRARGR 538 (543)
Q Consensus 499 l~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~ 538 (543)
..|+..||++.|.|.++.+..+.+.++|++.++||..+++
T Consensus 490 ~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~ 529 (536)
T PLN02792 490 WARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNK 529 (536)
T ss_pred hhccccceEEEEEEccCCCccccccCCCcccCccccccCC
Confidence 9999999999999998887777788999999999987764
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=8.5e-107 Score=861.36 Aligned_cols=510 Identities=51% Similarity=0.916 Sum_probs=405.3
Q ss_pred CCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCC
Q 009127 25 DSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTC 104 (543)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~ 104 (543)
.+++++|+|+|++...++||+.+++++||||+|||+||+++||+|+|+|+|+|+++|+|||||++|.+++++||+++|||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQc 102 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNC 102 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhccC
Q 009127 105 PIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLDSG 184 (543)
Q Consensus 105 ~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~g 184 (543)
||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.++..+++|++|+++||++.+...+...+..+
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 182 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNG 182 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcC
Confidence 99999999999999768999999999999999999999999998766666667789999999999998765554444444
Q ss_pred CCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEE
Q 009127 185 HNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVL 264 (543)
Q Consensus 185 ~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~ 264 (543)
...+.++.+||||++...+.++|++|++|||||||+|..+.+.|+|+||+|+||++||.+++|..+++|.|++||||||+
T Consensus 183 ~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvl 262 (545)
T PLN02168 183 HSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVL 262 (545)
T ss_pred CCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEE
Confidence 44567899999999643679999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC----cceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCC-CccccccccccccccccCCCCCCCCCCC
Q 009127 265 VTMDQAP----QDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPT-TEIAWSLNQARSIRWNLTASGPRPNPQG 339 (543)
Q Consensus 265 v~~~~~~----g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 339 (543)
|++++.+ ++|||++............|+|+|.++......++|..|. .+..........+...+.+....+.|..
T Consensus 263 v~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~ 342 (545)
T PLN02168 263 VTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQG 342 (545)
T ss_pred EEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcc
Confidence 9998654 3899999875444456788999998865322223333221 1111111111111112222222223322
Q ss_pred CCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCC
Q 009127 340 SYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFR 419 (543)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g 419 (543)
.+......+++++.+.......++...|.|||++|..|++|+++..++++++.+..+.++..|.+.....+++++.++.|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~ 422 (545)
T PLN02168 343 SYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYK 422 (545)
T ss_pred cccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCC
Confidence 22122223445554433111124567899999999999999987665544443333322222322112234678899999
Q ss_pred cEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecch
Q 009127 420 EFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENW 499 (543)
Q Consensus 420 ~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil 499 (543)
++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.||++||++|||++||||.|+|||||.
T Consensus 423 ~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~ 502 (545)
T PLN02168 423 DFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKA 502 (545)
T ss_pred CEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCc
Confidence 99999999998889999999999999999999998766667999999999999999999999999999999999999999
Q ss_pred hhhhcccEEEEEEe-----cCCCC-CCCcCCCCCcchhccc
Q 009127 500 ARQYLGQQFYLRVY-----SPANS-WRDELPIPKNALLCGR 534 (543)
Q Consensus 500 ~Hed~GMm~~~~V~-----~p~~~-~~~~~~~p~~~~~c~~ 534 (543)
.|++.||++.+.|. +|++. .+.+.++|++.++||.
T Consensus 503 ~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 503 EQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred ccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 99999999999885 34333 3445689999999984
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.4e-100 Score=801.97 Aligned_cols=520 Identities=50% Similarity=0.830 Sum_probs=452.6
Q ss_pred hhccccCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCC
Q 009127 19 VHGVYGDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDG 98 (543)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG 98 (543)
+++..+.++.+.|+|+++...+.++|.+++++++||++|||+|+|++||+|.|+|.|+++++++|||||++|..++|+||
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG 98 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG 98 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeec-cHHHH
Q 009127 99 VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRS-NHYVL 177 (543)
Q Consensus 99 ~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~ 177 (543)
+.+|||||+||++|+|+|++++|.||||||+|++.|+++|++|+|||.++...+.|++.+++|++|+++||+.+ ....+
T Consensus 99 ~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l 178 (563)
T KOG1263|consen 99 VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNL 178 (563)
T ss_pred CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHH
Confidence 33499999999999999999889999999999999999999999999999887778888999999999999996 77777
Q ss_pred HHHhccCCCCCC-CCeEEEcCCCCCc----ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCe
Q 009127 178 RRLLDSGHNLPF-PDGLLINGRGWNG----YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAA 252 (543)
Q Consensus 178 ~~~~~~g~~~~~-~~~~liNG~~~~~----p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~ 252 (543)
...++.+...+. +|..+|||+.... +.++|++||+|||||+|+|....+.|+|++|+|+||++||.+++|..+++
T Consensus 179 ~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~ 258 (563)
T KOG1263|consen 179 KNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDS 258 (563)
T ss_pred HHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeece
Confidence 777766554444 8999999998422 78999999999999999999889999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEEeCCCCcceEEEEeeccCCC----ccceEEEEEecCCCCCCCCCCC----CCCCCcccccccccccc
Q 009127 253 LDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPR----VLTTTAILHYSNSRRGVSGPIP----GGPTTEIAWSLNQARSI 324 (543)
Q Consensus 253 v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~----~~~~~~il~y~~~~~~~~~~~p----~~p~~~~~~~~~~~~~~ 324 (543)
+.|.||||+||++++++.+++|+|.+...+... ...+.++++|.++..+.+...+ ..|..+..++..+.+.+
T Consensus 259 l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~ 338 (563)
T KOG1263|consen 259 LDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSI 338 (563)
T ss_pred EEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcc
Confidence 999999999999999999999999999876654 6789999999985544333322 22224555667777777
Q ss_pred ccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccC-CCcccccCCCCCCC-
Q 009127 325 RWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFK-IPGVFTLGSMPTSP- 402 (543)
Q Consensus 325 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~-~~~~~~~~~~~~~p- 402 (543)
+..+....+.++|.+.+......+.+.+.+.......+++..++||+.+|..|+.|.+++.++. +++.++ +.+++.|
T Consensus 339 r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~-~d~p~~P~ 417 (563)
T KOG1263|consen 339 RSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFT-NDFPDKPP 417 (563)
T ss_pred cccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCcccc-CccCCCCc
Confidence 7777777778888887776666777777776654445778999999999999999998887655 444444 3355555
Q ss_pred -CCC--CCccceeEEecCCCcEEEEEEEeCCC---CCCCeeecCCCeEEEeecCCCCCC--CCCCCCCCCCCCcceeEEe
Q 009127 403 -NWG--NAYLQTSVMAANFREFVEIVFQNWED---TVQSYHIDGYSFFVVGMDGGQWTP--ASRTRYNLRDTVARSTTQV 474 (543)
Q Consensus 403 -~~~--~~~~~~~~~~~~~g~~v~~~i~N~~~---~~HP~HlHG~~F~Vl~~~~g~~~~--~~~~~~~~~~p~~rDTv~v 474 (543)
... +.+.+++++.+++++.+|++|+|.+. ..||||||||.|+||+.|.|.|++ +....||+.+|+.||||.|
T Consensus 418 ~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V 497 (563)
T KOG1263|consen 418 IKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQV 497 (563)
T ss_pred cccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEe
Confidence 221 23788999999999999999999874 458999999999999999999998 4446799999999999999
Q ss_pred CCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcchhccccCCCC
Q 009127 475 YPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNALLCGRARGRH 539 (543)
Q Consensus 475 p~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~~~~~ 539 (543)
||+||++|||.|||||+|++|||+.+|...||++.|.|.++++..+.+.++|++.++||..++..
T Consensus 498 ~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 498 PPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred CCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 99999999999999999999999999999999999999999988888899999999999987754
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=5.3e-99 Score=811.51 Aligned_cols=497 Identities=29% Similarity=0.505 Sum_probs=384.4
Q ss_pred CeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCc
Q 009127 27 PYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCP 105 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~ 105 (543)
++|+|+|+|+++.+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||+++ |||+
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHH-HHHhccC
Q 009127 106 IPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVL-RRLLDSG 184 (543)
Q Consensus 106 i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~-~~~~~~g 184 (543)
|+||++|+|+|++++++||||||||...|+ +||+|+|||+++.+.+.++..+|+|++|+++||++....++ ......+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999966899999999998765 59999999999876556666779999999999999876554 3333344
Q ss_pred CCCCCCCeEEEcCCCC--------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEc
Q 009127 185 HNLPFPDGLLINGRGW--------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIH 256 (543)
Q Consensus 185 ~~~~~~~~~liNG~~~--------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~ 256 (543)
..+..+|+++||||.. ..+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 4455779999999962 13579999999999999999999899999999999999999999999999999999
Q ss_pred CCCeEEEEEEeCCCCcceEEEEeeccCC----CccceEEEEEecCCCCCCCCCCCCCCC-CccccccccccccccccCCC
Q 009127 257 LGQTYSVLVTMDQAPQDYYIVVSSRFTP----RVLTTTAILHYSNSRRGVSGPIPGGPT-TEIAWSLNQARSIRWNLTAS 331 (543)
Q Consensus 257 pgeR~dv~v~~~~~~g~y~i~~~~~~~~----~~~~~~~il~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~ 331 (543)
+||||||+|++++.+|+|||++...... ......|+|+|.++........+..+. ........... .+...
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~l~~~ 316 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSN----KLRSL 316 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHh----hcccc
Confidence 9999999999998889999999754221 235689999998865321111111110 01000000000 11111
Q ss_pred CCCCCCCCCCCcccccceEEEEEeccC-----------CCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCC
Q 009127 332 GPRPNPQGSYHYGMIKISRTITLANSA-----------PYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPT 400 (543)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~ 400 (543)
.....|.. .. ...++++.+.... ...+....|.|||++|..|+.|++.+.+.++.+.+..+....
T Consensus 317 ~~~~~~~~-~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~ 392 (539)
T TIGR03389 317 NSAQYPAN-VP---VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPAN 392 (539)
T ss_pred cccCCCCC-CC---CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccC
Confidence 00000100 00 1223332221110 001234679999999998899988655443333322110000
Q ss_pred CCC-----------CCCCccceeEEecCCCcEEEEEEEeCC---CCCCCeeecCCCeEEEeecCCCCCCCC-CCCCCCCC
Q 009127 401 SPN-----------WGNAYLQTSVMAANFREFVEIVFQNWE---DTVQSYHIDGYSFFVVGMDGGQWTPAS-RTRYNLRD 465 (543)
Q Consensus 401 ~p~-----------~~~~~~~~~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~ 465 (543)
.|. +-..+.+.+++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|+.|
T Consensus 393 ~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~n 472 (539)
T TIGR03389 393 PPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVD 472 (539)
T ss_pred CCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCC
Confidence 110 001223567899999999999999975 348999999999999999999887532 23689999
Q ss_pred CCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcchhc
Q 009127 466 TVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNALLC 532 (543)
Q Consensus 466 p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c 532 (543)
|++|||+.||++||++|||++||||.|+|||||++|+..||++.|.+.+.+.....++++|++++.|
T Consensus 473 P~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 473 PPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999876655555678999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.9e-96 Score=793.10 Aligned_cols=500 Identities=32% Similarity=0.539 Sum_probs=386.0
Q ss_pred ccccCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECC-CCCceeecCcccCCCCCCCCCC
Q 009127 21 GVYGDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGV 99 (543)
Q Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~ 99 (543)
...+.+++++|+|+|+++.+++||+.+.+|+|||++|||+|++++||+|+|+|+|++ +++++|||||+++.+++++||+
T Consensus 17 ~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~ 96 (566)
T PLN02604 17 FPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGT 96 (566)
T ss_pred hhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCC
Confidence 445557899999999999999999999999999999999999999999999999998 5899999999999999999999
Q ss_pred CC-CCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHH
Q 009127 100 YG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLR 178 (543)
Q Consensus 100 p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~ 178 (543)
++ +||+|+||++++|+|++ +++||||||||.+.|+.+||+|+|||+++.+.+.++ .++.|.+|+|+||++....+..
T Consensus 97 ~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~ 174 (566)
T PLN02604 97 EGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQA 174 (566)
T ss_pred CccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHH
Confidence 98 99999999999999999 589999999999999999999999999986555555 4689999999999998765543
Q ss_pred HHhccC--CCCCCCCeEEEcCCCC-----------------------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCC
Q 009127 179 RLLDSG--HNLPFPDGLLINGRGW-----------------------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGH 233 (543)
Q Consensus 179 ~~~~~g--~~~~~~~~~liNG~~~-----------------------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~ 233 (543)
...... .....++.++|||++. ..+.++|++|++|||||||+|+.+.+.|+|+||
T Consensus 175 ~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH 254 (566)
T PLN02604 175 LGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGH 254 (566)
T ss_pred HhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCC
Confidence 222211 1123578999999853 123689999999999999999999999999999
Q ss_pred eeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCc-ceEEEEeeccC-CCccceEEEEEecCCCCCCCCC-C-CCC
Q 009127 234 SMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQ-DYYIVVSSRFT-PRVLTTTAILHYSNSRRGVSGP-I-PGG 309 (543)
Q Consensus 234 ~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~-~~~~~~~~il~y~~~~~~~~~~-~-p~~ 309 (543)
+|+|||+||.+++|+++++|.|++||||||+|++++.+| +|||++..... .+...+.|||+|.+.......+ . +..
T Consensus 255 ~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~ 334 (566)
T PLN02604 255 NMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSG 334 (566)
T ss_pred EEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999998765 89999864322 2346789999998653211111 0 101
Q ss_pred CC-CccccccccccccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccC
Q 009127 310 PT-TEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFK 388 (543)
Q Consensus 310 p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~ 388 (543)
+. ......+++... +......+. ......++++.+.......++...|.||+.+|..|..|++++.+..
T Consensus 335 ~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~ 404 (566)
T PLN02604 335 PLWNDVEPRLNQSLA----IKARHGYIH------PPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKEN 404 (566)
T ss_pred Ccccccchhhcchhc----ccccccCcC------CCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhc
Confidence 10 000000000000 000000000 0012345555543322223356789999999998888988765544
Q ss_pred CCcccccCCCCC-----------CCCCCCCccceeEEecCCCcEEEEEEEeCC------CCCCCeeecCCCeEEEeecCC
Q 009127 389 IPGVFTLGSMPT-----------SPNWGNAYLQTSVMAANFREFVEIVFQNWE------DTVQSYHIDGYSFFVVGMDGG 451 (543)
Q Consensus 389 ~~~~~~~~~~~~-----------~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~~~g 451 (543)
..+.++.+.... .+.....+.+..++.++.|++||++|+|.+ ...||||||||+||||++|.|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G 484 (566)
T PLN02604 405 LTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEG 484 (566)
T ss_pred CCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCC
Confidence 445554221100 000112234567789999999999999985 357999999999999999999
Q ss_pred CCCCCC-CCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcch
Q 009127 452 QWTPAS-RTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNAL 530 (543)
Q Consensus 452 ~~~~~~-~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~ 530 (543)
.|+... ...+|+.+|++|||+.||++||++|||++||||.|+|||||++|...||+++|.+. ++ ...++|++++
T Consensus 485 ~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~----~~~~~p~~~~ 559 (566)
T PLN02604 485 KFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE----RVGKLPSSIM 559 (566)
T ss_pred CCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----hccCCCCCcC
Confidence 887542 34688999999999999999999999999999999999999999999999999754 33 2457899999
Q ss_pred hccccCC
Q 009127 531 LCGRARG 537 (543)
Q Consensus 531 ~c~~~~~ 537 (543)
+|+..+|
T Consensus 560 ~C~~~~~ 566 (566)
T PLN02604 560 GCGESKG 566 (566)
T ss_pred ccccCCC
Confidence 9997664
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.4e-96 Score=792.27 Aligned_cols=496 Identities=30% Similarity=0.531 Sum_probs=377.3
Q ss_pred CCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-C
Q 009127 25 DSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-T 102 (543)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-t 102 (543)
.+++++|+|+|++..+++||+++++++||||+|||+||+++||+|+|+|+|+|+ ++++|||||+++++++++||+++ +
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 357899999999999999999999999999999999999999999999999998 78999999999999999999999 9
Q ss_pred CCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhc
Q 009127 103 TCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLD 182 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 182 (543)
||+|+||++|+|+|+++ ++||||||||.+.|+.+||+|+|||+++.+.+.++ .+|+|++|+++||++....+....+.
T Consensus 100 q~pI~PG~s~~Y~f~~~-~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~ 177 (574)
T PLN02191 100 QCAINPGETFTYKFTVE-KPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLS 177 (574)
T ss_pred cCCcCCCCeEEEEEECC-CCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhc
Confidence 99999999999999994 89999999999999999999999999754432233 46999999999999986443221121
Q ss_pred c--CCCCCCCCeEEEcCCCCC-------------------------cc-eEEEecCCEEEEEEEEcCCcceEEEEEeCCe
Q 009127 183 S--GHNLPFPDGLLINGRGWN-------------------------GY-TFTVEPGRTYRFRISNVGLTTSINFRIQGHS 234 (543)
Q Consensus 183 ~--g~~~~~~~~~liNG~~~~-------------------------~p-~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~ 234 (543)
. ......++.++|||++.. .| .++|++||+|||||||+|+.+.+.|+|+||+
T Consensus 178 ~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~ 257 (574)
T PLN02191 178 SKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHK 257 (574)
T ss_pred cCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCe
Confidence 1 111245788999987520 12 5999999999999999999999999999999
Q ss_pred eEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCC-cceEEEEeeccCC-CccceEEEEEecCCCCCCC--CCCCCCC
Q 009127 235 MKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAP-QDYYIVVSSRFTP-RVLTTTAILHYSNSRRGVS--GPIPGGP 310 (543)
Q Consensus 235 ~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~~-~~~~~~~il~y~~~~~~~~--~~~p~~p 310 (543)
|+|||+||.+++|+.+++|.|++||||||+|++++.+ ++||||+...... ......|||+|.+...... .+.+..|
T Consensus 258 ~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p 337 (574)
T PLN02191 258 LVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTP 337 (574)
T ss_pred EEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999876 5899998654321 1234579999987653211 1111111
Q ss_pred CCccccccccccccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCC
Q 009127 311 TTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIP 390 (543)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~ 390 (543)
... . ..........+......+.+.. ...++++.+... ....+..+|.|||.+|..|..|+|++.+.+..
T Consensus 338 ~~~-~--~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~ 407 (574)
T PLN02191 338 RWD-D--FERSKNFSKKIFSAMGSPSPPK------KYRKRLILLNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKYNLK 407 (574)
T ss_pred ccc-c--cchhhcccccccccccCCCCCC------cccceEEEeccc-ceeCCeEEEEECcccCcCCCcchHHHHhhccC
Confidence 100 0 0000011111100000011110 112344433321 11234568999999999899999877654444
Q ss_pred cccccCCCCC---------CCC-CCCCccceeEEecCCCcEEEEEEEeCC------CCCCCeeecCCCeEEEeecCCCCC
Q 009127 391 GVFTLGSMPT---------SPN-WGNAYLQTSVMAANFREFVEIVFQNWE------DTVQSYHIDGYSFFVVGMDGGQWT 454 (543)
Q Consensus 391 ~~~~~~~~~~---------~p~-~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~~~g~~~ 454 (543)
+.+..+.... .+. ....+.+.+++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~ 487 (574)
T PLN02191 408 LGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFK 487 (574)
T ss_pred cccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCC
Confidence 3332211000 000 001234567888999999999999985 568999999999999999999998
Q ss_pred CCC-CCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcchhcc
Q 009127 455 PAS-RTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNALLCG 533 (543)
Q Consensus 455 ~~~-~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~ 533 (543)
++. ...+|+.||++|||+.||++||++|||++||||.|+|||||++|...||++.|. +.+++ +.++|++.+.|+
T Consensus 488 ~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~~----~~~~p~~~~~C~ 562 (574)
T PLN02191 488 PGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLNR----IGKIPDEALGCG 562 (574)
T ss_pred cccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChhh----ccCCCcchhhhh
Confidence 632 246899999999999999999999999999999999999999999999999994 44442 345788999999
Q ss_pred ccCC
Q 009127 534 RARG 537 (543)
Q Consensus 534 ~~~~ 537 (543)
.+.+
T Consensus 563 ~~~~ 566 (574)
T PLN02191 563 LTKQ 566 (574)
T ss_pred cccc
Confidence 7654
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.1e-95 Score=785.11 Aligned_cols=489 Identities=31% Similarity=0.551 Sum_probs=376.9
Q ss_pred eEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-CCCc
Q 009127 28 YRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-TTCP 105 (543)
Q Consensus 28 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-tq~~ 105 (543)
+|+|+|+|+++.+++||+.+.+++|||++|||+|++++||+|+|+|+|+|. ++++|||||+++.+++++||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999985 88999999999999999999998 9999
Q ss_pred CCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhcc-C
Q 009127 106 IPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLDS-G 184 (543)
Q Consensus 106 i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~-g 184 (543)
|+||++++|+|++ +++||||||||.+.|+.+||+|+|||+++...+.++ .+|+|++|+|+||+++...+....... .
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 589999999999999999999999999986544555 468999999999999876543222221 1
Q ss_pred -CCCCCCCeEEEcCCCC-------------------------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEE
Q 009127 185 -HNLPFPDGLLINGRGW-------------------------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLV 238 (543)
Q Consensus 185 -~~~~~~~~~liNG~~~-------------------------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~vi 238 (543)
.....++.++|||++. ....++|++|++|||||||+|+.+.+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 1124578999999852 01348999999999999999999999999999999999
Q ss_pred EEcCccccccccCeEEEcCCCeEEEEEEeCCCC-cceEEEEeeccC-CCccceEEEEEecCCCCCCC--CCCCCCCCCcc
Q 009127 239 EVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAP-QDYYIVVSSRFT-PRVLTTTAILHYSNSRRGVS--GPIPGGPTTEI 314 (543)
Q Consensus 239 a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~-~~~~~~~~il~y~~~~~~~~--~~~p~~p~~~~ 314 (543)
|+||.+++|..+++|.|+|||||||+|++++.+ |+|||++..... .....+.|||+|.++..... .+.+..|. ..
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~-~~ 317 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPA-WD 317 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCC-cc
Confidence 999999999999999999999999999999766 589999876433 22346789999987643211 11111121 00
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccc
Q 009127 315 AWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFT 394 (543)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~ 394 (543)
+... .......+......+.+. ...++++.+.......++...|.+||.+|..|..|+|.+.+.+..+.+.
T Consensus 318 ~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~ 388 (541)
T TIGR03388 318 DFDR--SKAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFD 388 (541)
T ss_pred ccch--hhccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCcccc
Confidence 0000 000000000000011111 1234554433322223455679999999988889998776544333332
Q ss_pred cCCCC----------CCCCCCCCccceeEEecCCCcEEEEEEEeCC------CCCCCeeecCCCeEEEeecCCCCCCC-C
Q 009127 395 LGSMP----------TSPNWGNAYLQTSVMAANFREFVEIVFQNWE------DTVQSYHIDGYSFFVVGMDGGQWTPA-S 457 (543)
Q Consensus 395 ~~~~~----------~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~~~g~~~~~-~ 457 (543)
.+... ..+.....+.+..++.++.|++||++|+|.+ ...||||||||+||||++|.|.|+.. .
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~ 468 (541)
T TIGR03388 389 QKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVD 468 (541)
T ss_pred CCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccC
Confidence 11000 0011123345678889999999999999974 45799999999999999998888743 2
Q ss_pred CCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcchhcc
Q 009127 458 RTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNALLCG 533 (543)
Q Consensus 458 ~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~ 533 (543)
...+|+.+|++|||+.||++||++|||++||||.|+|||||++|+..||++.|.+. ++ ...++|+++++||
T Consensus 469 ~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 469 EKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred cccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 34689999999999999999999999999999999999999999999999999654 33 2456899999997
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=3.1e-93 Score=763.91 Aligned_cols=477 Identities=23% Similarity=0.388 Sum_probs=365.8
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-CCCcC
Q 009127 29 RFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-TTCPI 106 (543)
Q Consensus 29 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-tq~~i 106 (543)
..|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|++++++||+|+ |||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46999999999999999999999999999999999999999999999997 89999999999999999999999 99999
Q ss_pred CCCCeEEEEEEeC-CCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhccCC
Q 009127 107 PPGKNFTYVLQAK-DQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLDSGH 185 (543)
Q Consensus 107 ~PG~~~~y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~g~ 185 (543)
+||++|+|+|+++ +++||||||||.+.|+. ||+|+|||+++... ++ .+|+|++|+|+||+++...++...+..+.
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTP 164 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccC
Confidence 9999999999984 47999999999999987 59999999987543 33 45899999999999998776543332221
Q ss_pred --CCCCCCeEEEcCCCC--------------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCe-eEEEEEcCcccccc
Q 009127 186 --NLPFPDGLLINGRGW--------------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHS-MKLVEVEGSHTLQN 248 (543)
Q Consensus 186 --~~~~~~~~liNG~~~--------------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~-~~via~DG~~~~p~ 248 (543)
....++.++||||.. ..+.++|++||+|||||||+|+.+.+.|+|+||+ |+|||+||.+++|+
T Consensus 165 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 165 FTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred CccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 124568999999962 1368999999999999999999999999999999 99999999999999
Q ss_pred ccCeEEEcCCCeEEEEEEeCCC-------CcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCccccccccc
Q 009127 249 TYAALDIHLGQTYSVLVTMDQA-------PQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQA 321 (543)
Q Consensus 249 ~~~~v~l~pgeR~dv~v~~~~~-------~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~ 321 (543)
.++++.|++||||||+|++++. +|+||||+......+...+.|||+|.++........|..+...........
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDW 324 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhh
Confidence 9999999999999999999975 489999997654444456899999986543211111111100000000000
Q ss_pred cccccccCCCCCCCCCCCCCCcccccceEEEEEeccCC--CcCCeEEEEEcCeeecC--CCCchhhhcccCCCcccccCC
Q 009127 322 RSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAP--YMNGKQRYAINSVSFVP--ADTPLKLADYFKIPGVFTLGS 397 (543)
Q Consensus 322 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~iNg~~f~~--~~~p~~~~~~~~~~~~~~~~~ 397 (543)
. ...+.+......+. +. ....+++++.+..... ..++...|.|||++|.. ++.|+|...+.+.. .....
T Consensus 325 ~--~~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~--~~~~~ 397 (538)
T TIGR03390 325 L--EYELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGL--PATPN 397 (538)
T ss_pred h--heeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCC--CcCCC
Confidence 0 01122111110000 00 0124566666555321 12456789999999985 78899876542210 00000
Q ss_pred CCCCCCCCCCccceeEEecCCCcEEEEEEEeCC--------CCCCCeeecCCCeEEEeecCCCCCCCC-CCCCCCCCCCc
Q 009127 398 MPTSPNWGNAYLQTSVMAANFREFVEIVFQNWE--------DTVQSYHIDGYSFFVVGMDGGQWTPAS-RTRYNLRDTVA 468 (543)
Q Consensus 398 ~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~--------~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~p~~ 468 (543)
.+..+........++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+++.||++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~r 477 (538)
T TIGR03390 398 YTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVL 477 (538)
T ss_pred cccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCe
Confidence 000000111223466788999999999999974 468999999999999999999998543 23578889999
Q ss_pred ceeEEeC----------CCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCC
Q 009127 469 RSTTQVY----------PRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 469 rDTv~vp----------~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
|||+.|| +++|++|||++||||.|+|||||.+|...||++.|.|.+.+
T Consensus 478 RDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 478 RDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred ecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 9999996 78999999999999999999999999999999999997654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=5.7e-80 Score=660.19 Aligned_cols=427 Identities=21% Similarity=0.273 Sum_probs=321.2
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCcCC
Q 009127 29 RFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCPIP 107 (543)
Q Consensus 29 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~ 107 (543)
++|+|++++..+.++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||+|+ +||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999764 57999998 999999
Q ss_pred CCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhc-----
Q 009127 108 PGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLD----- 182 (543)
Q Consensus 108 PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~----- 182 (543)
||++|+|+|+++ ++||||||||.+.|+++||+|+|||++++..+ + .+|+|++|+|+||++....++...+.
T Consensus 124 PG~s~~Y~f~~~-~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p--~-~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPVR-QSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDP--V-RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEECC-CCeeEEEecCchhHhhccceEEEEECCCcccc--C-CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 999999999995 79999999999999999999999999865433 3 45899999999999765443311110
Q ss_pred -----------------cCCC----------------C------CCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCC
Q 009127 183 -----------------SGHN----------------L------PFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGL 222 (543)
Q Consensus 183 -----------------~g~~----------------~------~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~ 222 (543)
.|.. . .....+||||+.. ..+++.+++|++|||||||+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~ 279 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSA 279 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCC
Confidence 0100 0 0112489999973 2356899999999999999999
Q ss_pred cceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCCCC
Q 009127 223 TTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGV 302 (543)
Q Consensus 223 ~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~ 302 (543)
.+.+.|+|+||+|+||++||.+++|+.++++.|+|||||||+|+.+ ..|.|+|.+..... .....++|.+.+.....
T Consensus 280 ~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~~ 356 (587)
T TIGR01480 280 MTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR--TGYARGTLAVRLGLTAP 356 (587)
T ss_pred CceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC--CceEEEEEecCCCCCCC
Confidence 9999999999999999999999999999999999999999999987 46899999876432 23677788876542111
Q ss_pred CCCCCCCCCCcc-ccccccc---ccc-----------c---------------cc-------------------------
Q 009127 303 SGPIPGGPTTEI-AWSLNQA---RSI-----------R---------------WN------------------------- 327 (543)
Q Consensus 303 ~~~~p~~p~~~~-~~~~~~~---~~~-----------~---------------~~------------------------- 327 (543)
..+++..|.... +...... ... . .+
T Consensus 357 ~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (587)
T TIGR01480 357 VPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPM 436 (587)
T ss_pred CCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcc
Confidence 111111110000 0000000 000 0 00
Q ss_pred --cCCCC--CCCCCCCCC----------CcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCccc
Q 009127 328 --LTASG--PRPNPQGSY----------HYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVF 393 (543)
Q Consensus 328 --l~~~~--~~~~p~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~ 393 (543)
+.... ......... .......++++.+... .....+.|+|||+.|.+ .
T Consensus 437 ~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~--g~m~~~~wtiNG~~~~~-~--------------- 498 (587)
T TIGR01480 437 DRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLT--GNMERFAWSFDGEAFGL-K--------------- 498 (587)
T ss_pred cccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEc--CCCceeEEEECCccCCC-C---------------
Confidence 00000 000000000 0000124555554432 12235679999987731 0
Q ss_pred ccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEE
Q 009127 394 TLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQ 473 (543)
Q Consensus 394 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~ 473 (543)
..+.++.|++++|.|.|...+.||||||||.|+++..++ .+ +.++||+.
T Consensus 499 ------------------~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G-~~------------~~~~dTv~ 547 (587)
T TIGR01480 499 ------------------TPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQG-EF------------QVRKHTVD 547 (587)
T ss_pred ------------------CceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCC-cc------------cccCCcee
Confidence 114578999999999999999999999999999987643 11 35789999
Q ss_pred eCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEe
Q 009127 474 VYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 474 vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|+|++++.++|++||||.|+||||++.|++.|||..|+|.
T Consensus 548 V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 548 VPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999999999999999999999999883
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=4.3e-79 Score=649.13 Aligned_cols=411 Identities=19% Similarity=0.220 Sum_probs=302.4
Q ss_pred eEEEEEEEEEEEecCCCee-EEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcC
Q 009127 28 YRFFTWKITYGDIYPLGVK-QQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPI 106 (543)
Q Consensus 28 ~~~~~l~~~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i 106 (543)
...|+|++++....++|.. ..+|+|||++|||+||+++||+|+|+++|+|+++|+|||||+++.+ .+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCC
Confidence 3469999999999887644 4799999999999999999999999999999999999999998865 599998 8999
Q ss_pred CCCCeEEEEEEeCCCcccceecCCc----hhhhhccceeEEEEecCCCCCCCCCC--CCCceEEEeeeeeeccHHHHHHH
Q 009127 107 PPGKNFTYVLQAKDQIGSYFYFPSF----LFHKAAGAFGGIRIWSRPRIPVPFPP--PAGDFTVLAGDWYRSNHYVLRRL 180 (543)
Q Consensus 107 ~PG~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~ 180 (543)
.||++++|+|++++++||||||||. +.|+++||+|+|||+++.+.+.+++. ..+|++|+++||+++...++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996568999999995 79999999999999998754333332 34699999999999765543211
Q ss_pred hcc--CCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEE-eCCeeEEEEEcCccc-cccccCeEEEc
Q 009127 181 LDS--GHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRI-QGHSMKLVEVEGSHT-LQNTYAALDIH 256 (543)
Q Consensus 181 ~~~--g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i-~g~~~~via~DG~~~-~p~~~~~v~l~ 256 (543)
.+. ......++.++|||+. .|.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||.||+++ +|..+++|.|+
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~--~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~la 277 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAI--YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPIL 277 (523)
T ss_pred ccccccccCccCCeEEECCcc--cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEEC
Confidence 111 1123467899999999 8999885 579999999999999999998 899999999999986 89999999999
Q ss_pred CCCeEEEEEEeCCCCcceEEEEeeccCCC-----ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCC
Q 009127 257 LGQTYSVLVTMDQAPQDYYIVVSSRFTPR-----VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTAS 331 (543)
Q Consensus 257 pgeR~dv~v~~~~~~g~y~i~~~~~~~~~-----~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~ 331 (543)
|||||||+|+++ .+++|.+......... ......++++.........++|... ...
T Consensus 278 pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l------------------~~~ 338 (523)
T PRK10965 278 MGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL------------------ASL 338 (523)
T ss_pred ccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh------------------ccC
Confidence 999999999998 4678998875432110 0112344444432211111121110 000
Q ss_pred CCCCCCCCCCCcccccceEEEEEeccC-------------------C---------Cc--------------CCe-----
Q 009127 332 GPRPNPQGSYHYGMIKISRTITLANSA-------------------P---------YM--------------NGK----- 364 (543)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------------~---------~~--------------~g~----- 364 (543)
.+.+.+.. ...|++.+.... . .. .+.
T Consensus 339 ~~~~~~~~-------~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (523)
T PRK10965 339 PALPSLEG-------LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFH 411 (523)
T ss_pred CCCCcccc-------cceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000000 000111110000 0 00 000
Q ss_pred EEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCCC-CCCCeeecCCCe
Q 009127 365 QRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWED-TVQSYHIDGYSF 443 (543)
Q Consensus 365 ~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F 443 (543)
..|+|||++|.. +. ..+.++.|++++|+|.|.+. +.|||||||++|
T Consensus 412 ~~~~ING~~~~~-~~--------------------------------~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F 458 (523)
T PRK10965 412 HANKINGKAFDM-NK--------------------------------PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQF 458 (523)
T ss_pred ccccCCCeECCC-CC--------------------------------cceecCCCCEEEEEEEeCCCCCccCeEEeCcEE
Confidence 114788887742 11 11457899999999999875 689999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEec----CcccceeeecchhhhhcccEEEEEEe
Q 009127 444 FVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALD----NVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 444 ~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad----npG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|||++++.... ...+.|||||.|++ +.+.|+++++ ++|.||||||||+|||.|||..|+|.
T Consensus 459 ~Vl~~~g~~~~--------~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 459 RILSENGKPPA--------AHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEEEecCCCCC--------ccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 99999764221 12368999999988 6777776664 56799999999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=8.2e-77 Score=626.59 Aligned_cols=399 Identities=19% Similarity=0.200 Sum_probs=295.2
Q ss_pred EEEEEEEEEEecCCC-eeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCC
Q 009127 30 FFTWKITYGDIYPLG-VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPP 108 (543)
Q Consensus 30 ~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~P 108 (543)
.++|+++.+....+| ..+.+|+|||++|||+||+++||+|+|+|+|+|+++|++||||+++... .+||++ ++|.|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 378999999988774 6789999999999999999999999999999999999999999998764 577765 88999
Q ss_pred CCeEEEEEEeCCCcccceecCCc----hhhhhccceeEEEEecCCCCCCCCC-C-CCCceEEEeeeeeeccHHHHHHHhc
Q 009127 109 GKNFTYVLQAKDQIGSYFYFPSF----LFHKAAGAFGGIRIWSRPRIPVPFP-P-PAGDFTVLAGDWYRSNHYVLRRLLD 182 (543)
Q Consensus 109 G~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~-~-~~~e~~l~~~d~~~~~~~~~~~~~~ 182 (543)
|++|+|+|++.+++||||||||. ..|+++||+|+|||+++.+.+.+++ . ..+|++|+++||.++...... +..
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~-~~~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPE-YNE 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcc-ccc
Confidence 99999999986669999999995 4699999999999999765443433 2 345999999999987543321 001
Q ss_pred cCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEE-eCCeeEEEEEcCccc-cccccCeEEEcCCCe
Q 009127 183 SGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRI-QGHSMKLVEVEGSHT-LQNTYAALDIHLGQT 260 (543)
Q Consensus 183 ~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i-~g~~~~via~DG~~~-~p~~~~~v~l~pgeR 260 (543)
.......++.++|||+. .|.++|++| +|||||||+|+.+.+.|+| ++|+|+||++||+++ +|..++++.|+||||
T Consensus 202 ~~~~g~~gd~~lvNG~~--~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR 278 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQ--SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGER 278 (471)
T ss_pred cccCCccCCeeEECCcc--CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCe
Confidence 11123467899999999 899999975 8999999999999999999 899999999997776 899999999999999
Q ss_pred EEEEEEeCCCCcceEEEEeeccCCC-cc----------ceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccC
Q 009127 261 YSVLVTMDQAPQDYYIVVSSRFTPR-VL----------TTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLT 329 (543)
Q Consensus 261 ~dv~v~~~~~~g~y~i~~~~~~~~~-~~----------~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~ 329 (543)
|||+|++++ .+.+.+++....... .. ....+++...... .+..+ ..++..+.
T Consensus 279 ~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~p~~l~ 341 (471)
T PRK10883 279 REILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL-----LPLVT-----------DNLPMRLL 341 (471)
T ss_pred EEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEcccc-----ccCCC-----------CcCChhhc
Confidence 999999984 556666653211000 00 0011111111100 00000 00000111
Q ss_pred CCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCcc
Q 009127 330 ASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYL 409 (543)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 409 (543)
+.. ..+ ......+++.+.. ..|.|||++|.+...
T Consensus 342 ~~~--~~~------~~~~~~~~~~l~~--------~~~~INg~~~~~~~~------------------------------ 375 (471)
T PRK10883 342 PDE--IME------GSPIRSREISLGD--------DLPGINGALWDMNRI------------------------------ 375 (471)
T ss_pred CCC--CCC------CCCcceEEEEecC--------CcCccCCcccCCCcc------------------------------
Confidence 000 000 0011233444321 136899999853110
Q ss_pred ceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCc
Q 009127 410 QTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNV 489 (543)
Q Consensus 410 ~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnp 489 (543)
.+.++.|++++|+|.|. +.||||||||.|||+++++.... ..+..|||||.|+ +.++|+++++++
T Consensus 376 ---~~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~ 440 (471)
T PRK10883 376 ---DVTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQP 440 (471)
T ss_pred ---eeecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCC
Confidence 13468999999999886 68999999999999999763211 1124799999996 469999999988
Q ss_pred c----cceeeecchhhhhcccEEEEEEec
Q 009127 490 G----MWNIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 490 G----~w~~HCHil~Hed~GMm~~~~V~~ 514 (543)
| .||||||||+|||.|||..|+|..
T Consensus 441 ~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 441 SWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CCCCCcEEeecccccccccCCccCeEEec
Confidence 7 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-61 Score=512.44 Aligned_cols=412 Identities=21% Similarity=0.225 Sum_probs=296.7
Q ss_pred EEEEEEEEEEe-cCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCcCC
Q 009127 30 FFTWKITYGDI-YPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCPIP 107 (543)
Q Consensus 30 ~~~l~~~~~~~-~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~ 107 (543)
...+....... ..++.....|+|||++|||+||+++||+|+|+++|+|.+.|++||||+.++ +.+||++. +|+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCC
Confidence 33444444443 456677889999999999999999999999999999988899999998665 68999998 999999
Q ss_pred CCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhccCCCC
Q 009127 108 PGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLDSGHNL 187 (543)
Q Consensus 108 PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~g~~~ 187 (543)
||++++|.|+.+ ++||||||+|.+.|+++||+|++||++....+. .+|++..++..+|........... ......
T Consensus 112 ~~~~~~y~f~~~-~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 186 (451)
T COG2132 112 PGETPTYTFTQD-VPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGG 186 (451)
T ss_pred CCCcEEEeecCC-CCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccC
Confidence 999999999995 677999999999999999999999999865443 447777777788876543322211 111123
Q ss_pred CCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEe
Q 009127 188 PFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTM 267 (543)
Q Consensus 188 ~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~ 267 (543)
..++..+|||+. .|.+.++.| +||||++|+++.+.+.+++.+++|+||++||.+++|..+|.+.|+||||+||++++
T Consensus 187 ~~g~~~~vnG~~--~p~~~~~~g-~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~ 263 (451)
T COG2132 187 FPGDTLLVNGAI--LPFKAVPGG-VVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDM 263 (451)
T ss_pred CCCCeEEECCCc--cceeecCCC-eEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEc
Confidence 456899999987 677777665 69999999998888999999999999999999999989999999999999999999
Q ss_pred CCCCcceEEEEeeccCCCccceEEEEEecCCCCCC---CCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcc
Q 009127 268 DQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGV---SGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYG 344 (543)
Q Consensus 268 ~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~---~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 344 (543)
++ .+.+.+.+...... ....+........... ..+....+..+. ....... .+... ...+.
T Consensus 264 ~~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~--~~~~~--~~~~~------ 327 (451)
T COG2132 264 ND-GGAVTLTALGEDMP--DTLKGFRAPNPILTPSYPVLNGRVGAPTGDM---ADHAPVG--LLVTI--LVEPG------ 327 (451)
T ss_pred CC-CCeEEEEeccccCC--ceeeeeeccccccccccccccccccCCCcch---hhccccc--cchhh--cCCCc------
Confidence 94 77788887652111 1122222111111000 000000010000 0000000 00000 00000
Q ss_pred cccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEE
Q 009127 345 MIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEI 424 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 424 (543)
...+..+.+.. ..+...|.+|++.|.+ + ...+.++.|++++|
T Consensus 328 -~~~~~~~~l~~----~~~~~~~~~n~~~~~~-~--------------------------------~~~~~~~~G~~~~~ 369 (451)
T COG2132 328 -PNRDTDFHLIG----GIGGYVWAINGKAFDD-N--------------------------------RVTLIAKAGTRERW 369 (451)
T ss_pred -ccccccchhhc----ccccccccccCccCCC-C--------------------------------cCceeecCCCEEEE
Confidence 00111111111 1123457777777642 1 11245789999999
Q ss_pred EEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhc
Q 009127 425 VFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYL 504 (543)
Q Consensus 425 ~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~ 504 (543)
+|.|.+.+.|||||||+.|+|++.+. ......+.||||+.+.+++.++|+|.+++||.||||||+++|++.
T Consensus 370 ~i~n~~~~~HP~HlHg~~F~v~~~~~---------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~ 440 (451)
T COG2132 370 VLTNDTPMPHPFHLHGHFFQVLSGDA---------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDN 440 (451)
T ss_pred EEECCCCCccCeEEcCceEEEEecCC---------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhc
Confidence 99999999999999999999999971 112234689999999999999999999999999999999999999
Q ss_pred ccEEEEEEec
Q 009127 505 GQQFYLRVYS 514 (543)
Q Consensus 505 GMm~~~~V~~ 514 (543)
|||..+.|..
T Consensus 441 Gm~~~~~v~~ 450 (451)
T COG2132 441 GMMGQFGVVP 450 (451)
T ss_pred CCeeEEEecC
Confidence 9999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=6.2e-49 Score=393.77 Aligned_cols=264 Identities=17% Similarity=0.183 Sum_probs=219.3
Q ss_pred ccCCCeEEEEEEEEEEEec-CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC--CCceeecCcccCCCCCCCCCC
Q 009127 23 YGDSPYRFFTWKITYGDIY-PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR--EPFLISWNGLQQRRNSWQDGV 99 (543)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~-~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~--~~~~iH~HG~~~~~~~~~DG~ 99 (543)
.+...+++|+|++++.++. .+|..+.+|+|||++|||+||+++||+|+|+|+|+++ ..+++||||.. .+||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCC
Confidence 3555789999999999987 5799999999999999999999999999999999986 57899999962 47888
Q ss_pred CC-CCCcCCCCCeEEEEEEeCCCcccceecCC----chhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccH
Q 009127 100 YG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPS----FLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNH 174 (543)
Q Consensus 100 p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~ 174 (543)
+. +| |.||++++|+|+++ ++|||||||| +..|+.+||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~~-~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKAT-RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEcC-CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 76 65 99999999999994 8999999999 4679999999999999875422 458999999999998754
Q ss_pred HHHHHHhc-c-C-CCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccc-
Q 009127 175 YVLRRLLD-S-G-HNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNT- 249 (543)
Q Consensus 175 ~~~~~~~~-~-g-~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~- 249 (543)
........ . + .....++.++|||+.. ..+.+++++|+++||||+|++..+.+.||++|+.|++|+.||.+++|..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~ 249 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNR 249 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCC
Confidence 32110000 0 0 0123568999999952 1467899999999999999999889999999999999999999998644
Q ss_pred -cCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCC
Q 009127 250 -YAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSR 299 (543)
Q Consensus 250 -~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~ 299 (543)
++++.|+||||+||+|+++ .+|.|+++++...........++|+|++..
T Consensus 250 ~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 250 DVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred CcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 8999999999999999999 589999999765433234578999998764
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.5e-36 Score=260.20 Aligned_cols=116 Identities=39% Similarity=0.704 Sum_probs=108.3
Q ss_pred EEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCcCCCCCeE
Q 009127 34 KITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCPIPPGKNF 112 (543)
Q Consensus 34 ~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~PG~~~ 112 (543)
+|++..+.++|..+++|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++...+++||+++ +||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999999889999999999999999999999999999999999999999999988889999998 99999999999
Q ss_pred EEEEEeCCCcccceecCCchhhhhccceeEEEEecCC
Q 009127 113 TYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRP 149 (543)
Q Consensus 113 ~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 149 (543)
+|+|++++++||||||||...|..+||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 9999997559999999998888889999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=2.2e-30 Score=230.98 Aligned_cols=108 Identities=30% Similarity=0.462 Sum_probs=97.5
Q ss_pred CccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 009127 407 AYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMAL 486 (543)
Q Consensus 407 ~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 486 (543)
.+.+...+.++.|++++|+|+|.+...|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 34567789999999999999999999999999999999999998776555555678889999999999999999999999
Q ss_pred cCcccceeeecchhhhhcccEEEEEEec
Q 009127 487 DNVGMWNIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 487 dnpG~w~~HCHil~Hed~GMm~~~~V~~ 514 (543)
||||.|+||||+++|+|.|||+.|+|.+
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.93 E-value=4.1e-26 Score=207.90 Aligned_cols=139 Identities=35% Similarity=0.644 Sum_probs=115.3
Q ss_pred CceEEEeeeeeeccHHHHHH-HhccC----CCCCCCCeEEEcCCCC-----------CcceEEEecCCEEEEEEEEcCCc
Q 009127 160 GDFTVLAGDWYRSNHYVLRR-LLDSG----HNLPFPDGLLINGRGW-----------NGYTFTVEPGRTYRFRISNVGLT 223 (543)
Q Consensus 160 ~e~~l~~~d~~~~~~~~~~~-~~~~g----~~~~~~~~~liNG~~~-----------~~p~~~v~~G~~~rlRiiN~~~~ 223 (543)
+|++|+++||+++....+.. .+..+ ..++.+++++|||++. ..+.+++++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 47899999999987665533 33222 2267899999999753 26899999999999999999999
Q ss_pred ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec----cCCCccceEEEEEecCC
Q 009127 224 TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR----FTPRVLTTTAILHYSNS 298 (543)
Q Consensus 224 ~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~----~~~~~~~~~~il~y~~~ 298 (543)
+.+.|+|+||+|+|||+||.+++|..++++.|+|||||||+|++++++|+|+|++... .........|+|+|.++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999997799999999522 12235679999999863
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.78 E-value=1.4e-18 Score=154.63 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=82.3
Q ss_pred CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC---CCceeecCcccCCCCCCCCCCCC-CCCcCCCC----Ce--
Q 009127 42 PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR---EPFLISWNGLQQRRNSWQDGVYG-TTCPIPPG----KN-- 111 (543)
Q Consensus 42 ~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~---~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~PG----~~-- 111 (543)
..+....-+.++| .++|+|++++||+|+|+|+|.+. ....||+||...+..+.+||++. +|++|.|+ +.
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 3455566678888 46999999999999999999954 45677777776555567999998 99998884 11
Q ss_pred EEEEEEeCCCcccceecCCchhhhhccceeEEEEe
Q 009127 112 FTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 112 ~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (543)
.++.|+++ ++||||||||...|+.+||+|.|||+
T Consensus 115 ~~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 34556654 79999999999999999999999996
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.70 E-value=1.7e-15 Score=152.26 Aligned_cols=244 Identities=13% Similarity=0.032 Sum_probs=157.9
Q ss_pred CCeEEEcCCCCCcceEEEecCCEEEEEEEEcCC-cceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC
Q 009127 190 PDGLLINGRGWNGYTFTVEPGRTYRFRISNVGL-TTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 190 ~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~-~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
.+.+++||+.. .|.++++.|+++++++.|... ...|.+|+|++. +.||.. ....|.|||++.+.|+++
T Consensus 47 ~~~~~~nG~~p-GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~------~~~~I~PG~t~ty~F~~~ 115 (311)
T TIGR02376 47 YQAMTFDGSVP-GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGA------ALTQVNPGETATLRFKAT 115 (311)
T ss_pred EEEEEECCccc-CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCC------cceeECCCCeEEEEEEcC
Confidence 45799999973 699999999999999999864 247889999874 456643 123489999999999998
Q ss_pred CCCcceEEEEeecc--CCC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCccc
Q 009127 269 QAPQDYYIVVSSRF--TPR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGM 345 (543)
Q Consensus 269 ~~~g~y~i~~~~~~--~~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 345 (543)
.+|.||++|+... ..+ .....+.|.+..... .+ .. +....+. .. +|.+...... .
T Consensus 116 -~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~-----~~-~~--d~e~~l~-l~--d~~~~~~~~~---~------- 173 (311)
T TIGR02376 116 -RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG-----LP-EY--DKEYYIG-ES--DLYTPKDEGE---G------- 173 (311)
T ss_pred -CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC-----Cc-Cc--ceeEEEe-ee--eEeccccccc---c-------
Confidence 6999999998532 111 123344455543221 11 00 1000000 00 0111100000 0
Q ss_pred ccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEE
Q 009127 346 IKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIV 425 (543)
Q Consensus 346 ~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~ 425 (543)
..+..............+.|||+.+.. .| .+.++.|++++|.
T Consensus 174 ----~~~~~~~~~~~~~~~~~~~iNG~~~~~--~~--------------------------------~~~v~~G~~~RlR 215 (311)
T TIGR02376 174 ----GAYEDDVAAMRTLTPTHVVFNGAVGAL--TG--------------------------------DNALTAGVGERVL 215 (311)
T ss_pred ----ccccchHHHHhcCCCCEEEECCccCCC--CC--------------------------------CcccccCCcEEEE
Confidence 000000000000111347888875410 00 1246789999999
Q ss_pred EEeCCC-CCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCC-cceeEEeCCCCEEEEEEEecCcccceeeecchhhh-
Q 009127 426 FQNWED-TVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTV-ARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQ- 502 (543)
Q Consensus 426 i~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~-~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~He- 502 (543)
|.|.+. ..+.||++|++|.++..++....+ +. ..|++.|.||+.+.|.++++.||.|++|||...|.
T Consensus 216 iiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~ 285 (311)
T TIGR02376 216 FVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAF 285 (311)
T ss_pred EEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHH
Confidence 999976 568999999999999996543221 22 36999999999999999999999999999999887
Q ss_pred hcccEEEEEEec
Q 009127 503 YLGQQFYLRVYS 514 (543)
Q Consensus 503 d~GMm~~~~V~~ 514 (543)
..||++.++|..
T Consensus 286 ~~g~~~~i~~~g 297 (311)
T TIGR02376 286 EKGAAAQVKVEG 297 (311)
T ss_pred hCCCEEEEEECC
Confidence 779999998854
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.65 E-value=6.1e-16 Score=166.92 Aligned_cols=99 Identities=20% Similarity=0.336 Sum_probs=85.6
Q ss_pred eEEEEEECCcCCCc--eEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC---CCCCcCCCCCeEEEEEEeCC
Q 009127 46 KQQGILINGQFPGP--QIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY---GTTCPIPPGKNFTYVLQAKD 120 (543)
Q Consensus 46 ~~~~~~~Ng~~pgP--~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p---~tq~~i~PG~~~~y~f~~~~ 120 (543)
.+.+|+|||+.+++ .|++++||+|+|++.|.+...+.|||||+..... ..||.. .....|.||++++|+|++ +
T Consensus 484 ~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~a-d 561 (587)
T TIGR01480 484 ERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTA-D 561 (587)
T ss_pred ceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEEC-C
Confidence 56789999998874 7999999999999999999999999999976432 336642 233789999999999999 5
Q ss_pred CcccceecCCchhhhhccceeEEEEe
Q 009127 121 QIGSYFYFPSFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 121 ~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (543)
++|+||||||...|...||++.+.|.
T Consensus 562 ~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 562 ALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 79999999999999999999999874
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.43 E-value=1.6e-12 Score=111.72 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=78.6
Q ss_pred ccccCCCeEEEEEEEE--EEEe---cCCCeeEEEE-EECCcCCCceEEEecCCEEEEEEEECCCCCc--eeecCcccCCC
Q 009127 21 GVYGDSPYRFFTWKIT--YGDI---YPLGVKQQGI-LINGQFPGPQIDAVTNDNLIISVYNYLREPF--LISWNGLQQRR 92 (543)
Q Consensus 21 ~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~--~iH~HG~~~~~ 92 (543)
+..+.++.++|+++|. +.++ ...|+....+ ++|+++..+.|+|++||+|++++.|..+.++ .+++||.
T Consensus 17 ~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---- 92 (135)
T TIGR03096 17 MGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI---- 92 (135)
T ss_pred ccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc----
Confidence 4456667789999999 6665 4678887666 9999999999999999999999999876543 4444432
Q ss_pred CCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCch
Q 009127 93 NSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL 132 (543)
Q Consensus 93 ~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~ 132 (543)
+..|+||++.+|+|++ +++|+|||||-.+
T Consensus 93 ----------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 93 ----------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred ----------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 2568999999999999 5899999999754
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.39 E-value=3e-11 Score=129.66 Aligned_cols=231 Identities=18% Similarity=0.192 Sum_probs=141.8
Q ss_pred EEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeec-CcccCCCCCCCCCCCC------CCCcCCCCCeEEEEEEe
Q 009127 47 QQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISW-NGLQQRRNSWQDGVYG------TTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~-HG~~~~~~~~~DG~p~------tq~~i~PG~~~~y~f~~ 118 (543)
...+++||+. .|.+.++ |.++|+|+.|... ....+.+ .|..+. ....||.+. ....|.|||+++..+++
T Consensus 212 gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~-vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~ 288 (523)
T PRK10965 212 GDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY-VIASDGGLLAEPVKVSELPILMGERFEVLVDT 288 (523)
T ss_pred CCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-EEEeCCCcccCccEeCeEEECccceEEEEEEc
Confidence 3568999996 7898885 6699999999965 4456665 443222 246898542 33569999999999998
Q ss_pred CCCcccceecCCchhhhh------ccceeEEEEecCC---CCCCC-----CCCC-------CCceEEEeeeeee------
Q 009127 119 KDQIGSYFYFPSFLFHKA------AGAFGGIRIWSRP---RIPVP-----FPPP-------AGDFTVLAGDWYR------ 171 (543)
Q Consensus 119 ~~~~Gt~wYH~H~~~q~~------~Gl~G~liV~~~~---~~~~~-----~~~~-------~~e~~l~~~d~~~------ 171 (543)
. +.|.++...-...+.. +.-+-.+.|.... ..+.| .+.. .+.+.+.+..+..
T Consensus 289 ~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~ 367 (523)
T PRK10965 289 S-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQM 367 (523)
T ss_pred C-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhh
Confidence 5 5677776653211111 0011123333211 10110 0000 0122222211100
Q ss_pred ----ccHHHHHH--------Hh--------ccCC--CCCCC---CeEEEcCCCC--CcceEEEecCCEEEEEEEEcCCcc
Q 009127 172 ----SNHYVLRR--------LL--------DSGH--NLPFP---DGLLINGRGW--NGYTFTVEPGRTYRFRISNVGLTT 224 (543)
Q Consensus 172 ----~~~~~~~~--------~~--------~~g~--~~~~~---~~~liNG~~~--~~p~~~v~~G~~~rlRiiN~~~~~ 224 (543)
........ .+ +.+. ..+.. ..++|||+.+ ..+.++++.|++++|+|+|.+...
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~ 447 (523)
T PRK10965 368 LMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMNKPMFAAKKGQYERWVISGVGDMM 447 (523)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCCCcceecCCCCEEEEEEEeCCCCC
Confidence 00000000 00 0000 00001 1248999986 356689999999999999999755
Q ss_pred eEEEEEeCCeeEEEEEcCcccc---ccccCeEEEcCCCeEEEEEEeCC---CCcceEEEEeecc
Q 009127 225 SINFRIQGHSMKLVEVEGSHTL---QNTYAALDIHLGQTYSVLVTMDQ---APQDYYIVVSSRF 282 (543)
Q Consensus 225 ~~~~~i~g~~~~via~DG~~~~---p~~~~~v~l~pgeR~dv~v~~~~---~~g~y~i~~~~~~ 282 (543)
.|+|||||++|+|++.||.+.. +.+.|+|.+.| ++++++++++. .+|.|.++|+...
T Consensus 448 ~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~ 510 (523)
T PRK10965 448 LHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLE 510 (523)
T ss_pred ccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchh
Confidence 7999999999999999998764 35689999976 88999999973 4579999998753
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.32 E-value=1.8e-10 Score=124.96 Aligned_cols=234 Identities=12% Similarity=0.147 Sum_probs=143.7
Q ss_pred EEEEECCcC-C--------CceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeE
Q 009127 48 QGILINGQF-P--------GPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNF 112 (543)
Q Consensus 48 ~~~~~Ng~~-p--------gP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~ 112 (543)
..+++||+. + .++|+|++|+++++|+.|... ....+|.+|..+.. .+.||++. ....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V-Ia~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV-VEVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE-EEeCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 248999999999999999964 45678888876543 57899863 23569999999
Q ss_pred EEEEEeCCCcccceecCCch--hh--hh-ccceeEEEEecCCCCCCCC----CCCCC---------ceE-EEeeeeee--
Q 009127 113 TYVLQAKDQIGSYFYFPSFL--FH--KA-AGAFGGIRIWSRPRIPVPF----PPPAG---------DFT-VLAGDWYR-- 171 (543)
Q Consensus 113 ~y~f~~~~~~Gt~wYH~H~~--~q--~~-~Gl~G~liV~~~~~~~~~~----~~~~~---------e~~-l~~~d~~~-- 171 (543)
+..+++.+.+|.||.+.+.. .+ .. ..-.+.|..++....+.+. +..+. ++. +....+..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 99999954589999998742 11 11 1123333333322211110 00000 000 00000000
Q ss_pred -cc-HH----HHHHHhccCC-----C-CCCCCeEEEcCCCC---------------------------------------
Q 009127 172 -SN-HY----VLRRLLDSGH-----N-LPFPDGLLINGRGW--------------------------------------- 200 (543)
Q Consensus 172 -~~-~~----~~~~~~~~g~-----~-~~~~~~~liNG~~~--------------------------------------- 200 (543)
.. +. .+...+.... . ....-.+.|||..+
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00 00 0000000000 0 00001235555431
Q ss_pred -------CcceEEEecCCEEEEEEEEcCC--cceEEEEEeCCeeEEEEEc-Ccc-----------ccccccCeEEEcCCC
Q 009127 201 -------NGYTFTVEPGRTYRFRISNVGL--TTSINFRIQGHSMKLVEVE-GSH-----------TLQNTYAALDIHLGQ 259 (543)
Q Consensus 201 -------~~p~~~v~~G~~~rlRiiN~~~--~~~~~~~i~g~~~~via~D-G~~-----------~~p~~~~~v~l~pge 259 (543)
....+.++.|+++++.|.|.+. ...|+||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 0123677889999999999753 3379999999999999986 332 237778999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeeccC
Q 009127 260 TYSVLVTMDQAPQDYYIVVSSRFT 283 (543)
Q Consensus 260 R~dv~v~~~~~~g~y~i~~~~~~~ 283 (543)
-+-+.++++ +||.|.+||+....
T Consensus 486 ~vvirf~ad-NPG~W~~HCHi~~H 508 (539)
T TIGR03389 486 WAAIRFVAD-NPGVWFMHCHLEVH 508 (539)
T ss_pred eEEEEEecC-CCeEEEEEecccch
Confidence 999999999 79999999997654
No 27
>PLN02835 oxidoreductase
Probab=99.31 E-value=1.3e-10 Score=125.27 Aligned_cols=245 Identities=13% Similarity=0.101 Sum_probs=150.5
Q ss_pred EEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeEEEEEEeCC
Q 009127 47 QQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNFTYVLQAKD 120 (543)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~~y~f~~~~ 120 (543)
...+++||+. .|+++|++|+++++|+.|... ....+|+.|..+. ..+.||.+. ....|.|||+++.-+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~-VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMK-LVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEE-EEEECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 3678999997 589999999999999999975 4678888887654 357899864 2355999999999999965
Q ss_pred CcccceecCCchhh-hhccceeEEEEecCCC---CCCCC-CCCCC--c------eEEEeeeeeeccHH----HH-----H
Q 009127 121 QIGSYFYFPSFLFH-KAAGAFGGIRIWSRPR---IPVPF-PPPAG--D------FTVLAGDWYRSNHY----VL-----R 178 (543)
Q Consensus 121 ~~Gt~wYH~H~~~q-~~~Gl~G~liV~~~~~---~~~~~-~~~~~--e------~~l~~~d~~~~~~~----~~-----~ 178 (543)
.+|.||.+.-.... ......+.|-.++... .+.|. +..+. + ....+......... .. .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 58999998632111 1112234444433211 01111 00000 0 00000000000000 00 0
Q ss_pred HH--hccCCCC-CCCCeEEEcCCCCC---cc--------------------------------eEEEecCCEEEEEEEEc
Q 009127 179 RL--LDSGHNL-PFPDGLLINGRGWN---GY--------------------------------TFTVEPGRTYRFRISNV 220 (543)
Q Consensus 179 ~~--~~~g~~~-~~~~~~liNG~~~~---~p--------------------------------~~~v~~G~~~rlRiiN~ 220 (543)
.. +...... .....|.+||..+. .| .+.++.|+.+.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 00 0000000 00124667776641 11 23445677889999998
Q ss_pred CCcceEEEEEeCCeeEEEEE-cCcc----------ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccce
Q 009127 221 GLTTSINFRIQGHSMKLVEV-EGSH----------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTT 289 (543)
Q Consensus 221 ~~~~~~~~~i~g~~~~via~-DG~~----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~ 289 (543)
+.. .|+||||||.|+|++. +|.+ ..|...|++.+.+++.+-+.|+++ +||.|.++|+.... .....
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~~H-~~~Gm 505 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIWER-QYLGQ 505 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecchhh-hhccc
Confidence 765 7999999999999987 5532 248899999999999999999999 79999999987432 22233
Q ss_pred EEEEEec
Q 009127 290 TAILHYS 296 (543)
Q Consensus 290 ~~il~y~ 296 (543)
..++++.
T Consensus 506 ~~~~~V~ 512 (539)
T PLN02835 506 QFYLRVW 512 (539)
T ss_pred EEEEEEc
Confidence 4455554
No 28
>PRK10883 FtsI repressor; Provisional
Probab=99.30 E-value=1.1e-10 Score=124.22 Aligned_cols=221 Identities=13% Similarity=0.126 Sum_probs=135.3
Q ss_pred eeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeec-CcccCCCCCCCCCCC----C--CCCcCCCCCeEEEEE
Q 009127 45 VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISW-NGLQQRRNSWQDGVY----G--TTCPIPPGKNFTYVL 116 (543)
Q Consensus 45 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~-HG~~~~~~~~~DG~p----~--tq~~i~PG~~~~y~f 116 (543)
.....+++||+. .|.|.|+.| ++++|+.|... ....+++ .|.... ....||.+ . .+..|.|||+++.-.
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~-vIa~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLH-VIAGDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEE-EEEeCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345679999996 799999875 89999999976 4567777 554322 24678543 2 345689999999999
Q ss_pred EeCCCcccceecCCchhhhhcccee------------EEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHH-Hhcc
Q 009127 117 QAKDQIGSYFYFPSFLFHKAAGAFG------------GIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRR-LLDS 183 (543)
Q Consensus 117 ~~~~~~Gt~wYH~H~~~q~~~Gl~G------------~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~-~~~~ 183 (543)
++. +.+.+.+++-......+++.+ .+-++.....+ .. ...++..+............. .+..
T Consensus 284 d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~~~~l 358 (471)
T PRK10883 284 DMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSREISL 358 (471)
T ss_pred ECC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceEEEEe
Confidence 984 566777766321111111111 11111111000 00 000010000000000000000 0000
Q ss_pred CCCCCCCCeEEEcCCCCC--cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccc---cccCeEEEcCC
Q 009127 184 GHNLPFPDGLLINGRGWN--GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQ---NTYAALDIHLG 258 (543)
Q Consensus 184 g~~~~~~~~~liNG~~~~--~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p---~~~~~v~l~pg 258 (543)
+ .+.++|||+.++ .+.++++.|++++|+|.|.. .|+||||+++|+|++.||....| .+.|+|.+.
T Consensus 359 ~-----~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v~-- 428 (471)
T PRK10883 359 G-----DDLPGINGALWDMNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWVD-- 428 (471)
T ss_pred c-----CCcCccCCcccCCCcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcCcEEEcC--
Confidence 0 123479999863 33468999999999998862 69999999999999999986543 457999993
Q ss_pred CeEEEEEEeCCCCc---ceEEEEeeccC
Q 009127 259 QTYSVLVTMDQAPQ---DYYIVVSSRFT 283 (543)
Q Consensus 259 eR~dv~v~~~~~~g---~y~i~~~~~~~ 283 (543)
+++.+++++++..+ .|.++|+....
T Consensus 429 ~~v~i~~~f~~~~~~~~~~m~HCHiLeH 456 (471)
T PRK10883 429 GQVELLVYFGQPSWAHFPFLFYSQTLEM 456 (471)
T ss_pred CeEEEEEEecCCCCCCCcEEeecccccc
Confidence 57999999996444 79999987543
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=1.6e-09 Score=115.43 Aligned_cols=229 Identities=16% Similarity=0.156 Sum_probs=146.9
Q ss_pred CeeEEEEEECCcCCCceEEEecCCEEEEEEEECC-CCCceeecCcccCCCCCCCCCCC----C-CCCcCCCCCeEEEEEE
Q 009127 44 GVKQQGILINGQFPGPQIDAVTNDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGVY----G-TTCPIPPGKNFTYVLQ 117 (543)
Q Consensus 44 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~p----~-tq~~i~PG~~~~y~f~ 117 (543)
|.......+||+. -| +.+.++..+++|+.|.- .....+++.|..... ...||.+ . .+..+.|||+++....
T Consensus 186 ~~~g~~~~vnG~~-~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cc-eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4456677888855 24 44555566999999997 555666666555432 3567766 2 4567999999999999
Q ss_pred eCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeee-eeccHHHHHHHh-ccC----C-----C
Q 009127 118 AKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDW-YRSNHYVLRRLL-DSG----H-----N 186 (543)
Q Consensus 118 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~-~~~~~~~~~~~~-~~g----~-----~ 186 (543)
.. ..|++-+.|.. .+..+-+.+..-....... ++...+.+......|- ...........+ +.+ . .
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILTP--SYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeecccccccc--ccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 86 48899998876 3333333333322221110 0111111111111110 000000000000 000 0 0
Q ss_pred CCCCCeEEEcCCCCC--cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc---cccccCeEEEcCCCeE
Q 009127 187 LPFPDGLLINGRGWN--GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT---LQNTYAALDIHLGQTY 261 (543)
Q Consensus 187 ~~~~~~~liNG~~~~--~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~---~p~~~~~v~l~pgeR~ 261 (543)
......+.+||+.++ .+.+.++.|+++||+|.|-+. ..|+||+||+.|+|++.| ... .+..+|++.+.|++++
T Consensus 339 ~~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~ 416 (451)
T COG2132 339 GIGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERL 416 (451)
T ss_pred ccccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEE
Confidence 012346899999873 467899999999999999998 589999999999999999 222 3577899999999999
Q ss_pred EEEEEeCCCCcceEEEEeecc
Q 009127 262 SVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 262 dv~v~~~~~~g~y~i~~~~~~ 282 (543)
.+.++++ .+|.|.++|+...
T Consensus 417 ~v~~~a~-~~g~~~~HCH~l~ 436 (451)
T COG2132 417 LVRFDAD-YPGPWMFHCHILE 436 (451)
T ss_pred EEEEeCC-CCCceEEeccchh
Confidence 9999999 6889999998754
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.05 E-value=7.6e-09 Score=112.35 Aligned_cols=221 Identities=11% Similarity=0.079 Sum_probs=132.2
Q ss_pred ceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeEEEEEEeCCCc-ccceecCCc
Q 009127 59 PQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNFTYVLQAKDQI-GSYFYFPSF 131 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~~y~f~~~~~~-Gt~wYH~H~ 131 (543)
++|.|++|+++++|+.|... ....+++.|..+. ..+.||.+. ....|.|||+++.-+++.+.+ |.||.+.-.
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~-VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLT-VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEE-EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 35899999999999999863 5667777776553 357899763 235599999999999995334 589998653
Q ss_pred hhh---hhccceeEEEEecCC-CCCCC---C---CCCCC-------ceEEEeeeeeeccHHHHHHH--h-ccCCCCCCCC
Q 009127 132 LFH---KAAGAFGGIRIWSRP-RIPVP---F---PPPAG-------DFTVLAGDWYRSNHYVLRRL--L-DSGHNLPFPD 191 (543)
Q Consensus 132 ~~q---~~~Gl~G~liV~~~~-~~~~~---~---~~~~~-------e~~l~~~d~~~~~~~~~~~~--~-~~g~~~~~~~ 191 (543)
..+ ...+ .+++..... ....+ . +..+. +..++-.............. + ..+.......
T Consensus 282 ~~~~~~~~~~--~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (541)
T TIGR03388 282 RGRKPNTPPG--LTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYT 359 (541)
T ss_pred ccCCCCCccE--EEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceE
Confidence 322 1122 244443221 10000 0 00000 00000000000000000000 0 0000000011
Q ss_pred eEEEcCCCCC---------------------------------------------cceEEEecCCEEEEEEEEcCC----
Q 009127 192 GLLINGRGWN---------------------------------------------GYTFTVEPGRTYRFRISNVGL---- 222 (543)
Q Consensus 192 ~~liNG~~~~---------------------------------------------~p~~~v~~G~~~rlRiiN~~~---- 222 (543)
.+.+||..+. .-.+.++.|++|.+.|.|...
T Consensus 360 ~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~ 439 (541)
T TIGR03388 360 KWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGN 439 (541)
T ss_pred EEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCC
Confidence 2445554320 123677889999999999752
Q ss_pred -cceEEEEEeCCeeEEEEEc-Ccc-----------ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccC
Q 009127 223 -TTSINFRIQGHSMKLVEVE-GSH-----------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFT 283 (543)
Q Consensus 223 -~~~~~~~i~g~~~~via~D-G~~-----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~ 283 (543)
...|+||||||.|+|++.+ |.+ ..|...|++.+.++.-+-+.|+++ +||.|.+||+....
T Consensus 440 ~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~~H 512 (541)
T TIGR03388 440 NSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIEPH 512 (541)
T ss_pred CCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccchhh
Confidence 3479999999999999987 433 147788999999999999999999 79999999987644
No 31
>PLN02792 oxidoreductase
Probab=99.01 E-value=1.8e-08 Score=108.47 Aligned_cols=228 Identities=14% Similarity=0.130 Sum_probs=136.7
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEE-EEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLV-EVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..++|||+.. .|.|+++.|+++++++.|-... ...+|.||....-- ..||.+. + +-.|.||+.+...|++++
T Consensus 36 ~~~~vNGq~P-GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~q~~~~~~DGv~~----t-qcPI~PG~sftY~F~~~~ 108 (536)
T PLN02792 36 RGILINGQFP-GPEIRSLTNDNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGVYG----T-TCPIPPGKNYTYDFQVKD 108 (536)
T ss_pred EEEEECCCCC-CCcEEEECCCEEEEEEEeCCCC-CcCEeCCCcccCCCCccCCCCC----C-cCccCCCCcEEEEEEeCC
Confidence 5799999974 7999999999999999999764 45555555443222 2799542 2 258999999999999965
Q ss_pred CCcceEEEEeeccCCCccceEEEE-EecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcccccc
Q 009127 270 APQDYYIVVSSRFTPRVLTTTAIL-HYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKI 348 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~~~~~~~il-~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 348 (543)
.+|+||.+++.... ......|-| .+.....+ .+.+. +..+.. .-+.+..... . ...
T Consensus 109 q~GT~WYHsH~~~q-~~~Gl~G~liI~~~~~~~--~p~~~-~d~e~~----------i~l~Dw~~~~--~-------~~~ 165 (536)
T PLN02792 109 QVGSYFYFPSLAVQ-KAAGGYGSLRIYSLPRIP--VPFPE-PAGDFT----------FLIGDWYRRN--H-------TTL 165 (536)
T ss_pred CccceEEecCcchh-hhcccccceEEeCCcccC--cCCCc-ccceeE----------EEecccccCC--H-------HHH
Confidence 69999999986321 112233322 23211111 01110 000000 0011100000 0 000
Q ss_pred eEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEe
Q 009127 349 SRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQN 428 (543)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 428 (543)
...+ ........-.....|||+... ....++++.|++++|+|.|
T Consensus 166 ~~~~--~~g~~~~~~~d~~liNG~~~~----------------------------------~~~~~~v~~Gk~yRlRliN 209 (536)
T PLN02792 166 KKIL--DGGRKLPLMPDGVMINGQGVS----------------------------------YVYSITVDKGKTYRFRISN 209 (536)
T ss_pred HHHh--hccCcCCCCCCEEEEeccCCC----------------------------------CcceEEECCCCEEEEEEEE
Confidence 0000 000000000123667766321 0124678899999999999
Q ss_pred CCCC-CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC-cccceee
Q 009127 429 WEDT-VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN-VGMWNIR 495 (543)
Q Consensus 429 ~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn-pG~w~~H 495 (543)
.+.. ..-|+|.||+|.|++.++... .|...|++.|.+|+.+.+.++++. +|.|-+.
T Consensus 210 a~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 210 VGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred cCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 9765 589999999999999976422 244569999999999999999976 4765544
No 32
>PLN02354 copper ion binding / oxidoreductase
Probab=99.01 E-value=1.5e-08 Score=109.69 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=141.8
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEE-EEEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKL-VEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..++|||+.. .|.|+++.|+++++++.|.... ...+|.||....- -..||.+. ..-.|.||+.+...|++++
T Consensus 47 ~~~~iNGq~P-GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~ 119 (552)
T PLN02354 47 QVILINGQFP-GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKD 119 (552)
T ss_pred EEEEECCCCc-CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCC
Confidence 5799999974 7999999999999999999864 4556666654432 24788542 3458999999999999864
Q ss_pred CCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCC-CCCccccccccccccccccCCCCCCCCCCCCCCcccccc
Q 009127 270 APQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGG-PTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKI 348 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 348 (543)
.+|+||.+++.... ......|-|...+... .+.|.. +..+.. .-+....-.. . ...
T Consensus 120 q~GT~WYHsH~~~Q-~~~Gl~G~lII~~~~~---~~~p~~~~d~e~~----------l~l~Dw~~~~--~-------~~~ 176 (552)
T PLN02354 120 QIGSYFYYPSTGMH-RAAGGFGGLRVNSRLL---IPVPYADPEDDYT----------VLIGDWYTKS--H-------TAL 176 (552)
T ss_pred CCcceEEecCccce-ecCCccceEEEcCCcC---CCCCCCCcCceEE----------EEeeeeccCC--H-------HHH
Confidence 68999999875321 1112333333332211 011110 000000 0000000000 0 000
Q ss_pred eEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEe
Q 009127 349 SRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQN 428 (543)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 428 (543)
...+.... .........|||+..... . .....++++.|++++|+|+|
T Consensus 177 ~~~~~~g~---~~~~~d~~liNG~~~~~~----------------~--------------~~~~~~~v~~Gk~yRlRiIN 223 (552)
T PLN02354 177 KKFLDSGR---TLGRPDGVLINGKSGKGD----------------G--------------KDEPLFTMKPGKTYRYRICN 223 (552)
T ss_pred HHHHhcCC---CCCCCCeEEEeCCcCCCC----------------C--------------CCceEEEECCCCEEEEEEEe
Confidence 00000000 000112467777632100 0 01235788999999999999
Q ss_pred CCCC-CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC-cccceeeec
Q 009127 429 WEDT-VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN-VGMWNIRSE 497 (543)
Q Consensus 429 ~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn-pG~w~~HCH 497 (543)
.+.. ..-|||.||+|.||+.++... .|...|++.|.+|+...+.++++. +|.|-+.-.
T Consensus 224 a~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 224 VGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred cCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 8755 588999999999999976432 244569999999999999999975 788776654
No 33
>PLN02604 oxidoreductase
Probab=99.00 E-value=1.2e-08 Score=111.15 Aligned_cols=222 Identities=12% Similarity=0.162 Sum_probs=132.5
Q ss_pred ceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeEEEEEEeCCCcc-cceecCCc
Q 009127 59 PQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNFTYVLQAKDQIG-SYFYFPSF 131 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~~y~f~~~~~~G-t~wYH~H~ 131 (543)
++|.+++|+++++|+.|... ....+++-|..+. ..+.||.+. ....|.|||+++.-+++.+.+| .||-+...
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~-VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMT-VVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEE-EEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 58999999999999999965 4556666666543 357899774 2356999999999999954445 79998642
Q ss_pred h---hhhhccceeEEEEecCCC-CCCCCCCC----CCceEEEeee---------eeeccHHHHHHHh---ccCCCCCCCC
Q 009127 132 L---FHKAAGAFGGIRIWSRPR-IPVPFPPP----AGDFTVLAGD---------WYRSNHYVLRRLL---DSGHNLPFPD 191 (543)
Q Consensus 132 ~---~q~~~Gl~G~liV~~~~~-~~~~~~~~----~~e~~l~~~d---------~~~~~~~~~~~~~---~~g~~~~~~~ 191 (543)
. .|...| .+.|-.++... .+.+.... -.+....+.. ............. ..........
T Consensus 303 ~~~~~~~~~~-~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 381 (566)
T PLN02604 303 VSRNNTTPPG-LAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYR 381 (566)
T ss_pred ccCCCCCcce-eEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeE
Confidence 2 133333 23333332111 10010000 0000000000 0000000000000 0000000011
Q ss_pred eEEEcCCCCC----------------------------------------------cceEEEecCCEEEEEEEEcCC---
Q 009127 192 GLLINGRGWN----------------------------------------------GYTFTVEPGRTYRFRISNVGL--- 222 (543)
Q Consensus 192 ~~liNG~~~~----------------------------------------------~p~~~v~~G~~~rlRiiN~~~--- 222 (543)
.|.|||..+. ...+.++.|++|.+.|.|...
T Consensus 382 ~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~ 461 (566)
T PLN02604 382 RWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNA 461 (566)
T ss_pred EEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccC
Confidence 3455554320 113677889999999999752
Q ss_pred --cceEEEEEeCCeeEEEEEc-Ccc-----------ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccC
Q 009127 223 --TTSINFRIQGHSMKLVEVE-GSH-----------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFT 283 (543)
Q Consensus 223 --~~~~~~~i~g~~~~via~D-G~~-----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~ 283 (543)
...|+||+|||.|+|++.+ |.+ ..|...|++.+.++.-+-|.++++ +||.|.+||+....
T Consensus 462 ~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~~H 535 (566)
T PLN02604 462 NNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIESH 535 (566)
T ss_pred CCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecchhH
Confidence 3479999999999999987 432 137778999999999999999998 79999999987543
No 34
>PLN02991 oxidoreductase
Probab=99.00 E-value=1.8e-08 Score=108.47 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=137.2
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeE-EEEEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMK-LVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~-via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..++|||+.. .|.++++.|+++++++.|.... ...+|.||.... --..||.+ . + .-.|.||+++...|++++
T Consensus 48 ~~~~vNG~~P-GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~---~-t-QcpI~PG~sftY~F~~~~ 120 (543)
T PLN02991 48 QGILINGKFP-GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVY---G-T-TCPIPPGKNYTYALQVKD 120 (543)
T ss_pred EEEEEcCCCC-CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCC---C-C-CCccCCCCcEEEEEEeCC
Confidence 4799999974 7999999999999999999864 556777776542 23479964 2 2 457999999999999965
Q ss_pred CCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCC-CCCCccccccccccccccccCCCCCCCCCCCCCCcccccc
Q 009127 270 APQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPG-GPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKI 348 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 348 (543)
.+|+||.+++.... ......|-|...+... .+.|. ....+.. .-+.+..-.. . ...
T Consensus 121 q~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~----------i~l~DW~~~~--~-------~~~ 177 (543)
T PLN02991 121 QIGSFYYFPSLGFH-KAAGGFGAIRISSRPL---IPVPFPAPADDYT----------VLIGDWYKTN--H-------KDL 177 (543)
T ss_pred CCcceEEecCcchh-hhCCCeeeEEEeCCcc---cCcccccccceeE----------EEecceecCC--H-------HHH
Confidence 69999999986421 1122344333332211 01111 0000000 0000000000 0 000
Q ss_pred eEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEe
Q 009127 349 SRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQN 428 (543)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 428 (543)
...+ ... ....-.....|||+.. ...++++.|++++|+|+|
T Consensus 178 ~~~~--~~~-~~~~~~d~~liNG~~~------------------------------------~~~~~v~~G~~yRlRiIN 218 (543)
T PLN02991 178 RAQL--DNG-GKLPLPDGILINGRGS------------------------------------GATLNIEPGKTYRLRISN 218 (543)
T ss_pred HHHh--hcC-CCCCCCCEEEEccCCC------------------------------------CceEEECCCCEEEEEEEe
Confidence 0000 000 0000011355666521 123667899999999999
Q ss_pred CCCC-CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCc-c-ccee
Q 009127 429 WEDT-VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNV-G-MWNI 494 (543)
Q Consensus 429 ~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnp-G-~w~~ 494 (543)
.+.. .+-|+|.||+|+|++.++.. ..|...|++.|.+|+.+-+.++++++ | .|+.
T Consensus 219 a~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 219 VGLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred ccCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 8765 47999999999999997532 23556799999999999999999874 5 3443
No 35
>PLN02168 copper ion binding / pectinesterase
Probab=98.97 E-value=3.3e-08 Score=106.52 Aligned_cols=220 Identities=11% Similarity=0.080 Sum_probs=133.7
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEE-EEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLV-EVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..+++||+.. .|.++++.|+++++++.|.-.. ...+|.||....-- ..||.+. .+-.|.||+++...|++++
T Consensus 46 ~~~~vNG~~P-GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~ 118 (545)
T PLN02168 46 QVIVINDMFP-GPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKD 118 (545)
T ss_pred EEEEECCcCC-CCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCC
Confidence 4689999974 7999999999999999999875 56677777543222 2588652 2347999999999999965
Q ss_pred CCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcccccce
Q 009127 270 APQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKIS 349 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 349 (543)
.+|+||.+++.... ......|.|...+.... +.+.+ .+..+.. + -+....... .. ...
T Consensus 119 q~GT~WYHsH~~~Q-~~~GL~G~lII~~~~~~-~~p~~-~~d~e~~--l--------~l~Dw~~~~-~~--------~~~ 176 (545)
T PLN02168 119 QIGSYFYFPSLLLQ-KAAGGYGAIRIYNPELV-PVPFP-KPDEEYD--I--------LIGDWFYAD-HT--------VMR 176 (545)
T ss_pred CCceEEEecChhhh-hhCcceeEEEEcCCccc-CcCcC-cccceee--E--------EEEecCCCC-HH--------HHH
Confidence 69999999985321 11223344444332210 00111 0100100 0 011000000 00 000
Q ss_pred EEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeC
Q 009127 350 RTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNW 429 (543)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 429 (543)
.. +.... .........|||+... ...++++.|++++|+|.|.
T Consensus 177 ~~--~~~g~-~~~~~d~~liNG~~~~-----------------------------------~~~~~v~~G~~yRlRiiNa 218 (545)
T PLN02168 177 AS--LDNGH-SLPNPDGILFNGRGPE-----------------------------------ETFFAFEPGKTYRLRISNV 218 (545)
T ss_pred hh--hhcCC-CCCCCCEEEEeccCCC-----------------------------------cceEEeCCCCEEEEEEEec
Confidence 00 00000 0000113556665210 1246788999999999998
Q ss_pred CCC-CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC
Q 009127 430 EDT-VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN 488 (543)
Q Consensus 430 ~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn 488 (543)
+.. .+-|+|.||+|+|++.++... .|...|++.|.+|+.+.+.+++++
T Consensus 219 ~~~~~~~~~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 219 GLKTCLNFRIQDHDMLLVETEGTYV-----------QKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred cCCceEEEEECCcEEEEEEECCeEC-----------CCceeeEEEEcCCceEEEEEEcCC
Confidence 755 589999999999999876422 345569999999999999999974
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.93 E-value=7.4e-08 Score=104.44 Aligned_cols=235 Identities=11% Similarity=0.113 Sum_probs=140.7
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEE-EEEcCccccccccCeEEEcCCCeEEEEEEeC-
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKL-VEVEGSHTLQNTYAALDIHLGQTYSVLVTMD- 268 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~- 268 (543)
..++|||+.. .|.|+++.|+++++++.|.-......+|.||..+.- -..||.+. +..-.|.||+.+...++++
T Consensus 28 ~~~~~NG~~P-GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~~~ 102 (538)
T TIGR03390 28 YSVVVNGTSP-GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKPEP 102 (538)
T ss_pred EEEEECCcCC-CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEecC
Confidence 4799999974 799999999999999999865345677888775432 24788763 2233688999999999875
Q ss_pred CCCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcccccc
Q 009127 269 QAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKI 348 (543)
Q Consensus 269 ~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 348 (543)
+.+|+||.+++... +.....|.|...+.... +.. .+.+ ...-+....-.. .+ ..
T Consensus 103 ~q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~~---~~~----~d~e--------~~l~l~Dw~~~~--~~-------~~ 156 (538)
T TIGR03390 103 GDAGSYFYHSHVGF--QAVTAFGPLIVEDCEPP---PYK----YDDE--------RILLVSDFFSAT--DE-------EI 156 (538)
T ss_pred CCCeeeEEecCCch--hhhcceeEEEEccCCcc---CCC----ccCc--------EEEEEeCCCCCC--HH-------HH
Confidence 36899999998632 21224444444432110 100 0100 000011110000 00 00
Q ss_pred eEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEe
Q 009127 349 SRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQN 428 (543)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 428 (543)
...+. ..............|||+.......... + . ...| ....++++.|++++|+|+|
T Consensus 157 ~~~~~-~~~~~~~~~~d~~liNG~~~~~~~~~~~-------------~-----~--~~~~-~~~~~~v~~G~~yRlRlIN 214 (538)
T TIGR03390 157 EQGLL-STPFTWSGETEAVLLNGKSGNKSFYAQI-------------N-----P--SGSC-MLPVIDVEPGKTYRLRFIG 214 (538)
T ss_pred Hhhhh-ccCCccCCCCceEEECCccccccccccc-------------c-----C--CCCC-cceEEEECCCCEEEEEEEc
Confidence 00000 0000000111247788874321000000 0 0 0001 1346889999999999999
Q ss_pred CCCC-CCCeeecCCC-eEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCc
Q 009127 429 WEDT-VQSYHIDGYS-FFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNV 489 (543)
Q Consensus 429 ~~~~-~HP~HlHG~~-F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnp 489 (543)
.+.. ..-|+|.||+ |+|++.++. +..|...|++.|.+|+.+-|.++++.+
T Consensus 215 a~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 215 ATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred cCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCc
Confidence 9765 4789999999 999999764 234667899999999999999999764
No 37
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.85 E-value=1.6e-07 Score=101.84 Aligned_cols=237 Identities=11% Similarity=0.142 Sum_probs=140.3
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEE-EEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLV-EVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..++|||+.- .|.|+++.|+++++++.|.... ...+|.||..+.-- -.||.. . ..-.|.||+++...|++++
T Consensus 49 ~vi~vNGq~P-GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~~d 121 (596)
T PLN00044 49 EAIGINGQFP-GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQVKD 121 (596)
T ss_pred EEEEEcCcCC-CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEeCC
Confidence 4799999974 7999999999999999999874 56778888654432 479853 2 3468999999999999965
Q ss_pred CCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCC-CccccccccccccccccCCCCCCCCCCCCCCcccccc
Q 009127 270 APQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPT-TEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKI 348 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 348 (543)
.+|+||.+++..... .....|-|...+.... +.+.+. +. .+.. .-+.+..... . ...
T Consensus 122 q~GT~WYHsH~~~Q~-~~Gl~GalII~~~~~~-~~P~~~-~~~~e~~----------i~l~DW~~~~--~-------~~~ 179 (596)
T PLN00044 122 QVGSFFYAPSTALHR-AAGGYGAITINNRDVI-PIPFGF-PDGGDIT----------LFIADWYARD--H-------RAL 179 (596)
T ss_pred CCceeEeeccchhhh-hCcCeeEEEEcCcccc-cccccC-CcccceE----------EEecccccCC--H-------HHH
Confidence 699999999754211 1223343333332210 011110 00 0000 0011000000 0 000
Q ss_pred eEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEe
Q 009127 349 SRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQN 428 (543)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 428 (543)
.+.+.... .........|||+.-...+...+ . +. .....++++.|++++|+|+|
T Consensus 180 ~~~l~~g~---~~~~~d~~lING~g~~~~n~~~~-----------~-------~~-----~~~~~i~V~~Gk~yRlRiIN 233 (596)
T PLN00044 180 RRALDAGD---LLGAPDGVLINAFGPYQYNDSLV-----------P-------PG-----ITYERINVDPGKTYRFRVHN 233 (596)
T ss_pred HHHHhcCC---CCCCCCceEEcccCccccCCccc-----------c-------CC-----CccceEEECCCCEEEEEEEE
Confidence 00000000 00001124466542100000000 0 00 01236889999999999999
Q ss_pred CCCC-CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCc-c--cce
Q 009127 429 WEDT-VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNV-G--MWN 493 (543)
Q Consensus 429 ~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnp-G--~w~ 493 (543)
.+.. .--|+|-||+|.|++.++. +..|..-|++.|.+|+.+.+.++++.+ | .|+
T Consensus 234 aa~~~~~~fsIdgH~mtVIa~DG~-----------~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 234 VGVATSLNFRIQGHNLLLVEAEGS-----------YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred ccCCceEEEEECCCEEEEEEeCCc-----------ccCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 8754 4679999999999999753 224667799999999999999999875 5 466
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.83 E-value=3.5e-08 Score=87.60 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=72.8
Q ss_pred CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc-----------cccccCeEEEcCCCeEEEEEEeCC
Q 009127 201 NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT-----------LQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 201 ~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~-----------~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..+.++++.|++++|+|.|.+.. .|+||+||+.|+|++.++... .|...|++.+.+|+++.+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 46889999999999999998886 899999999999999998874 57789999999999999999998
Q ss_pred CCcceEEEEeec
Q 009127 270 APQDYYIVVSSR 281 (543)
Q Consensus 270 ~~g~y~i~~~~~ 281 (543)
.+|.|.++|+..
T Consensus 110 ~~G~w~~HCHi~ 121 (138)
T PF07731_consen 110 NPGPWLFHCHIL 121 (138)
T ss_dssp STEEEEEEESSH
T ss_pred cceEEEEEEchH
Confidence 899999999875
No 39
>PLN02191 L-ascorbate oxidase
Probab=98.79 E-value=3e-07 Score=100.27 Aligned_cols=229 Identities=13% Similarity=0.103 Sum_probs=132.9
Q ss_pred ECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeEEEEEEeCCCc-cc
Q 009127 52 INGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNFTYVLQAKDQI-GS 124 (543)
Q Consensus 52 ~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~~y~f~~~~~~-Gt 124 (543)
+||+.-.++|.|++|++.++|+.|... ....+++.|..+. ..+.||.+. ....|.||||++.-+++.+.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~t-VIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLV-VVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEE-EEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 444432237999999999999999954 4556777776553 357899874 235699999999999996445 58
Q ss_pred ceecCCchhhh---hccceeEEEEecCCCCCCCC------CCCCC-----ceEE-Eeeeee-eccHHHH-HHH--hccCC
Q 009127 125 YFYFPSFLFHK---AAGAFGGIRIWSRPRIPVPF------PPPAG-----DFTV-LAGDWY-RSNHYVL-RRL--LDSGH 185 (543)
Q Consensus 125 ~wYH~H~~~q~---~~Gl~G~liV~~~~~~~~~~------~~~~~-----e~~l-~~~d~~-~~~~~~~-~~~--~~~g~ 185 (543)
||-+.-...+. ..++ +.|-.+.......+. +..+. +... .+.... ....... ... +....
T Consensus 298 y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 376 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN 376 (574)
T ss_pred EEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc
Confidence 99886432211 1232 333333322110000 00000 0000 000000 0000000 000 00000
Q ss_pred CCCCCCeEEEcCCCCC---------------------------------------------cceEEEecCCEEEEEEEEc
Q 009127 186 NLPFPDGLLINGRGWN---------------------------------------------GYTFTVEPGRTYRFRISNV 220 (543)
Q Consensus 186 ~~~~~~~~liNG~~~~---------------------------------------------~p~~~v~~G~~~rlRiiN~ 220 (543)
.......+.+||..+. ...+.++.|+.+.+=|.|.
T Consensus 377 ~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~ 456 (574)
T PLN02191 377 LIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNA 456 (574)
T ss_pred eeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECC
Confidence 0000113445554320 1123455688899888887
Q ss_pred C-----CcceEEEEEeCCeeEEEEEc-Ccc-----------ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccC
Q 009127 221 G-----LTTSINFRIQGHSMKLVEVE-GSH-----------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFT 283 (543)
Q Consensus 221 ~-----~~~~~~~~i~g~~~~via~D-G~~-----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~ 283 (543)
. ....|+||+|||+|+|++.. |.+ ..|...|++.+.++.=+-+.++++ +||-|.+||+....
T Consensus 457 ~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~~H 535 (574)
T PLN02191 457 NVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIEPH 535 (574)
T ss_pred CcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCchhh
Confidence 5 24579999999999999775 322 257789999999999999999998 79999999987644
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.73 E-value=3e-08 Score=85.08 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=67.4
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC-cc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN-VG 490 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn-pG 490 (543)
+++.++.|+.+++.+.|....++.+|+||...-- ..+....+ .. -.-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~-----~~~~DG~~--------~~-~~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPP-----SPWMDGVP--------GV-TQCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTT-----GGGGSGGT--------TT-SGSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeee-----eeecCCcc--------cc-cceeEEeecceeeeEeeecccc
Confidence 3577889999999999998889999999965311 00110000 00 0123778999999999988 99
Q ss_pred cceeeecchhhhhcccEEEEEEecC
Q 009127 491 MWNIRSENWARQYLGQQFYLRVYSP 515 (543)
Q Consensus 491 ~w~~HCHil~Hed~GMm~~~~V~~p 515 (543)
.|.||||...|..+||.+.+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999999878999999998765
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.72 E-value=1.6e-07 Score=80.95 Aligned_cols=74 Identities=19% Similarity=0.357 Sum_probs=54.7
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA 137 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (543)
.+.|++++||+| +++|....++++.+.|.. +...+...+.||++++|.|+. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 479999999985 556876677777665421 111122357899999999964 899999997 56668
Q ss_pred cceeEEEEe
Q 009127 138 GAFGGIRIW 146 (543)
Q Consensus 138 Gl~G~liV~ 146 (543)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.54 E-value=1.9e-07 Score=78.52 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=46.1
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhcc
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAG 138 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~G 138 (543)
..|++++|+.|+|+++|.....+.+...++.. ...|.||++.++.|+. +++|+|=|+|-.+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~---~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFTP-LKPGEYEFYCTMHP---N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEEE--S-EEEEEB-SSS----T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEcC-CCCEEEEEEcCCCC---c-
Confidence 59999999999999999988777666666432 2568999999999987 58999999998555 2
Q ss_pred ceeEEEE
Q 009127 139 AFGGIRI 145 (543)
Q Consensus 139 l~G~liV 145 (543)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6777765
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=7e-06 Score=88.30 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=141.9
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCee-EEEEEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSM-KLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~-~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..++|||+-. .|.|.++.|+++.++++|-.. ..+.+|.||-.. .--..||.+ ...=.|.|||.|-..++.++
T Consensus 48 ~vi~iNG~fP-GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~-----~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 48 QVITINGQFP-GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVY-----ITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred eeEeecCCCC-CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCc-----cccCCcCCCCeEEEEEEeCC
Confidence 4789999974 799999999999999999966 467777777633 333459944 24457899999999999997
Q ss_pred CCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCcc-----ccccc-cccccccccCCCCCCCCCCCCCCc
Q 009127 270 APQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEI-----AWSLN-QARSIRWNLTASGPRPNPQGSYHY 343 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~-----~~~~~-~~~~~~~~l~~~~~~~~p~~~~~~ 343 (543)
..|+||.+++...... ....|-|........ +-|.+ .|..+. +|..+ ....+...+......+.
T Consensus 121 q~GT~~yh~h~~~~Ra-~G~~G~liI~~~~~~-p~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~------- 190 (563)
T KOG1263|consen 121 QIGTLWYHSHVSWQRA-TGVFGALIINPRPGL-PVPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPN------- 190 (563)
T ss_pred cceeEEEeeccccccc-cCceeEEEEcCCccC-CCCCC-CCCceeEEEeEeeccccCHHHHHHhhccCCCCCC-------
Confidence 8999999998754322 113443433322110 01111 111110 11110 00011000000000000
Q ss_pred ccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEE
Q 009127 344 GMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVE 423 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 423 (543)
. .....|||+.. ..+.|...+++..|++..
T Consensus 191 ----------------~---~D~~~iNg~~g-------------------------------~~~~~~~~l~v~pGktY~ 220 (563)
T KOG1263|consen 191 ----------------P---SDGVLINGRSG-------------------------------FLYNCTPTLTVEPGKTYR 220 (563)
T ss_pred ----------------C---CCceEECCCCC-------------------------------cccCceeEEEEcCCCEEE
Confidence 0 11245555541 122346678899999999
Q ss_pred EEEEeCCCC--CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCc-c-cceeeec
Q 009127 424 IVFQNWEDT--VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNV-G-MWNIRSE 497 (543)
Q Consensus 424 ~~i~N~~~~--~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnp-G-~w~~HCH 497 (543)
|+|.|.+-. .+ |.|-||.+.||+.++- + ..|..-|++.|-+|++..+..++|.+ + -|+.=|=
T Consensus 221 lRiiN~g~~~~l~-F~I~~H~ltvVe~Dg~-y----------~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 221 LRIINAGLNTSLN-FSIANHQLTVVEVDGA-Y----------TKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred EEEEccccccceE-EEECCeEEEEEEecce-E----------EeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 999998633 34 9999999999999752 1 23556699999999999999999864 4 3555554
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.34 E-value=2e-06 Score=71.61 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=56.7
Q ss_pred CCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCC-CCCCCCCC-CCCcCCCCCeEEEEEEeCCCcccceecCCchh
Q 009127 56 FPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRN-SWQDGVYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLF 133 (543)
Q Consensus 56 ~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~-~~~DG~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~ 133 (543)
|-...|+|++||+| +++|.-..++++.++....... ....+... +...+.||+++++.|.. +|+|.|||. .
T Consensus 14 F~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~ 86 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--P 86 (99)
T ss_pred EeCCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--C
Confidence 33478999999986 4558766667666654321100 00011111 22457899999998864 899999997 7
Q ss_pred hhhccceeEEEEe
Q 009127 134 HKAAGAFGGIRIW 146 (543)
Q Consensus 134 q~~~Gl~G~liV~ 146 (543)
+...||.|.|+|+
T Consensus 87 H~~aGM~G~I~V~ 99 (99)
T TIGR02656 87 HRGAGMVGKITVE 99 (99)
T ss_pred ccccCCEEEEEEC
Confidence 7788999999985
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.13 E-value=6.5e-06 Score=74.91 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=78.1
Q ss_pred eeEEecCCCcEEEEEEEeCCCC-CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC-
Q 009127 411 TSVMAANFREFVEIVFQNWEDT-VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN- 488 (543)
Q Consensus 411 ~~~~~~~~g~~v~~~i~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn- 488 (543)
...+.++.|++++|.|.|.+.. .+.|++.||+|.|++.++... .|...|++.|.+|+.+.|.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEEeCCC
Confidence 3467889999999999998764 689999999999999976422 267789999999999999999987
Q ss_pred cccceeee----cchhhhhcccEEEEEEec
Q 009127 489 VGMWNIRS----ENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 489 pG~w~~HC----Hil~Hed~GMm~~~~V~~ 514 (543)
+|.|.++| +...+...|+...+.+.+
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 99999999 667788889888887764
No 46
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.07 E-value=1.4e-05 Score=71.30 Aligned_cols=90 Identities=10% Similarity=-0.004 Sum_probs=58.7
Q ss_pred eEEecCCCcEEEEEEEeCCC-CCCCeeecCCCeEEEeecCCCCCCC-CCCCCCCCCCCcceeEEeCC---C--CEEEEEE
Q 009127 412 SVMAANFREFVEIVFQNWED-TVQSYHIDGYSFFVVGMDGGQWTPA-SRTRYNLRDTVARSTTQVYP---R--SWTAIYM 484 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~~~~~p~~rDTv~vp~---~--g~v~irf 484 (543)
+.+.++.|++|++++.|.+. ..|.|-||.+.- .+... .... .+.......+|+ + ++..+.|
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~--------~~~~~p~mdG----~~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGP--------PYPYMPGMDG----LGFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCC--------ccccccccCC----CCccccCcccCCCCCCccceeEEEE
Confidence 34778999999999999865 567766664321 11000 0000 011112222222 2 2467888
Q ss_pred EecCcccceeeecchhhhhcccEEEEEEe
Q 009127 485 ALDNVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 485 ~adnpG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
+++.+|.+.||||+..|...||.+.+.|.
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 88999999999999999999999999873
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.00 E-value=9e-06 Score=67.67 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=53.9
Q ss_pred CCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCC------CC-CCCcCCCCCeEEEEEEeCCCcccceec
Q 009127 56 FPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGV------YG-TTCPIPPGKNFTYVLQAKDQIGSYFYF 128 (543)
Q Consensus 56 ~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~------p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH 128 (543)
|-.+.|++++||+|+ +.|....++++.+=-- ....|. +. ....+.||+++++.|+ ++|+|.|+
T Consensus 14 F~P~~i~V~~G~tV~--~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~ 83 (99)
T PF00127_consen 14 FDPSEITVKAGDTVT--FVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYY 83 (99)
T ss_dssp EESSEEEEETTEEEE--EEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEE
T ss_pred EeCCEEEECCCCEEE--EEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEE
Confidence 334799999999865 5665555555544210 000110 00 1134789999999997 59999999
Q ss_pred CCchhhhhccceeEEEEe
Q 009127 129 PSFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 129 ~H~~~q~~~Gl~G~liV~ 146 (543)
|- . |...||.|.|+|+
T Consensus 84 C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 84 CT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp ET-T-TGGTTSEEEEEEE
T ss_pred cC-C-CcccCCEEEEEEC
Confidence 98 5 8888999999995
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.98 E-value=2.6e-05 Score=83.74 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=69.0
Q ss_pred EecCCCeeE--EEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEE
Q 009127 39 DIYPLGVKQ--QGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVL 116 (543)
Q Consensus 39 ~~~~~g~~~--~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f 116 (543)
.+..+|.+. .+.+..-+|--..|+|++||+|+++++|.-...=.+ ||+.+.+. |+ ...+.||++.+..|
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~~dv~PG~t~svtF 603 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---NMEVAPQATASVTF 603 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc---cEEEcCCceEEEEE
Confidence 355677554 445566677556899999999999999953211111 55543211 11 24578999999999
Q ss_pred EeCCCcccceecCCc---hhhhhccceeEEEEecC
Q 009127 117 QAKDQIGSYFYFPSF---LFHKAAGAFGGIRIWSR 148 (543)
Q Consensus 117 ~~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 148 (543)
++ +++|+|||||.. ..| .+|.|.++|+++
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 99 589999999984 234 389999999873
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.88 E-value=7.5e-05 Score=59.91 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=51.0
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCcCCCCCeEEEEEEeCCCcccceecCCchhhhh
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKA 136 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~ 136 (543)
.+.|++++||+|. ++|.....+++++.... ++... ....+.||+++++.| +++|+|-|||-.+.
T Consensus 10 P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~-------~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREAMPHNVHFVAGV-------LGEAALKGPMMKKEQAYSLTF---TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCCCCccEEecCCC-------CccccccccccCCCCEEEEEC---CCCEEEEEEcCCCC---
Confidence 4789999999975 57887777787765421 11110 112357888888777 36999999997543
Q ss_pred ccceeEEEEe
Q 009127 137 AGAFGGIRIW 146 (543)
Q Consensus 137 ~Gl~G~liV~ 146 (543)
+|.|.++|+
T Consensus 75 -~M~G~v~V~ 83 (83)
T TIGR02657 75 -FMRGKVVVE 83 (83)
T ss_pred -CCeEEEEEC
Confidence 499999985
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.69 E-value=0.00034 Score=64.10 Aligned_cols=100 Identities=22% Similarity=0.205 Sum_probs=71.9
Q ss_pred EEEECCcCCC-ceEEEecCCEEEEEEEECCCCCceeec--CcccC--CCCCCCCCCC----C------CCCcCCCCCeEE
Q 009127 49 GILINGQFPG-PQIDAVTNDNLIISVYNYLREPFLISW--NGLQQ--RRNSWQDGVY----G------TTCPIPPGKNFT 113 (543)
Q Consensus 49 ~~~~Ng~~pg-P~i~v~~Gd~v~i~~~N~l~~~~~iH~--HG~~~--~~~~~~DG~p----~------tq~~i~PG~~~~ 113 (543)
.+-|||..-| ++|.+-.|-+|.|+++|.-..++++-. -+..+ ......||.. | +...|.+|++..
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 5678887654 799999999999999998544433221 11111 1223455521 2 123688999998
Q ss_pred EEEEeCCCcccceecCCchhhhhccceeEEEEecCC
Q 009127 114 YVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRP 149 (543)
Q Consensus 114 y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 149 (543)
-.|... ++|+|||-|-...|...||++-|+|.+.-
T Consensus 155 ~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 155 GVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred EEEccC-CCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 778653 69999999999999999999999999754
No 51
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.64 E-value=0.0002 Score=59.55 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=58.4
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
..+.++.|++|+|+ |.+...|-+.++...+..-. . ........+++.+.||+...+.|.. ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGV-----K--------ELAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccch-----h--------hhcccccccccccCCCCEEEEEeCC--CEE
Confidence 35788999999887 66667888877543221100 0 0001123467888899998886654 999
Q ss_pred ceeeecchhhhhcccEEEEEEe
Q 009127 492 WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 492 w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.|||- -|..+||.+.+.|.
T Consensus 80 y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEEcC--CccccCCEEEEEEC
Confidence 999998 69999999999873
No 52
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.64 E-value=0.00056 Score=61.33 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=71.1
Q ss_pred EEECCcCCC-ceEEEecCCEEEEEEEECCCCCceeecCcccCCC-------CCCCCCCC----C-CC-----CcCCCCCe
Q 009127 50 ILINGQFPG-PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRR-------NSWQDGVY----G-TT-----CPIPPGKN 111 (543)
Q Consensus 50 ~~~Ng~~pg-P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~-------~~~~DG~p----~-tq-----~~i~PG~~ 111 (543)
+-|||+..| |+|-+..|-+|.|+++|.-..++++-. -+.+ ....||.. | ++ ..|.+|++
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 567887765 799999999999999999665554433 1111 12356643 3 21 33678888
Q ss_pred EEEEEEeCCCcccceecCCchhhhhccceeEEEEecCC
Q 009127 112 FTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRP 149 (543)
Q Consensus 112 ~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 149 (543)
..-.|+.. ++|+|||-|-...|..+||+|-+||...-
T Consensus 152 ~sg~~~~~-~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 152 RSGWWNDT-SAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred eEEEeccC-CCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 66666654 79999999999999999999999999754
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.54 E-value=0.00039 Score=59.82 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=52.9
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhcc
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAG 138 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~G 138 (543)
-.|+|++||+ |++.|.-...++++.-+.. ..+|.- ...-.+|+++++.|. ++|+|-|+|- -|..+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~-----~~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~--PH~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM-----DPEGSG--TLKAGINESFTHTFE---TPGEYTYYCT--PHPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC-----Cccccc--ccccCCCcceEEEec---ccceEEEEec--cCCCCC
Confidence 4899999999 5677887667777665542 112221 233455677777774 5999999995 456779
Q ss_pred ceeEEEEec
Q 009127 139 AFGGIRIWS 147 (543)
Q Consensus 139 l~G~liV~~ 147 (543)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.53 E-value=0.00036 Score=59.43 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=51.2
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeec-CcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhh
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISW-NGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKA 136 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~-HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~ 136 (543)
...|+|++||+|+....|. ++++.+ .+. .-+|.. ...-.+|+++++.| +++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~--~~~s~~g~~~~~tF---~~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAE--AFKSKINEEYTVTV---TEEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCcc--cccCCCCCEEEEEe---CCCEEEEEEcC--CCcc
Confidence 4689999999987776664 344443 221 012221 12224577766666 36999999997 6778
Q ss_pred ccceeEEEEecCC
Q 009127 137 AGAFGGIRIWSRP 149 (543)
Q Consensus 137 ~Gl~G~liV~~~~ 149 (543)
.||.|.|+|.+++
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 8999999999853
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.31 E-value=0.00092 Score=57.98 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=49.8
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|+.|+|++.|.+..+|.|-++++. -...+++++..+|+|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---------------------------is~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYG---------------------------ISEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCC---------------------------cceEECCCCeEEEEEECCCCEEE
Confidence 477899999999999998888887776541 13456789999999999999999
Q ss_pred eeeecc
Q 009127 493 NIRSEN 498 (543)
Q Consensus 493 ~~HCHi 498 (543)
.|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999987
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.17 E-value=0.0022 Score=54.52 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=50.6
Q ss_pred CCCceEEEecCCEEEEEEEECC-CCCceeecCcccCCCCCCCCCCCCC-CCcCCCCCeEEEEEEeCCCcccceecCCchh
Q 009127 56 FPGPQIDAVTNDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGVYGT-TCPIPPGKNFTYVLQAKDQIGSYFYFPSFLF 133 (543)
Q Consensus 56 ~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~p~t-q~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~ 133 (543)
|-...|+|++||+|+ ++|+. ..++++..-+ ++.+.+ .....||++|+|.|. ++|+|-|+|- .
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~---------~~~f~s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~--p 102 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG---------DGDLDESERVSEEGTTYEHTFE---EPGIYLYVCV--P 102 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC---------CCCccccccccCCCCEEEEEec---CCcEEEEEcc--C
Confidence 334689999999966 66543 3555554311 111111 123578999999994 6999999996 4
Q ss_pred hhhccceeEEEEe
Q 009127 134 HKAAGAFGGIRIW 146 (543)
Q Consensus 134 q~~~Gl~G~liV~ 146 (543)
|...||.|.|+|+
T Consensus 103 H~~~gM~G~I~V~ 115 (115)
T TIGR03102 103 HEALGMKGAVVVE 115 (115)
T ss_pred CCCCCCEEEEEEC
Confidence 5666999999985
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.74 E-value=0.0041 Score=52.13 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=44.2
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|+.+.+++.|.+...|-|.+-+. + -...+++|+..++.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------------------------~-~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL--------------------------G-ISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------------------------T-EEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC--------------------------c-eEEEECCCCEEEEEEcCCCCEEE
Confidence 47789999999999999877766655441 1 23778889999999999999999
Q ss_pred eeeecchhhhhcccEEEE
Q 009127 493 NIRSENWARQYLGQQFYL 510 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~ 510 (543)
-|||-+ |.+ |-+.+
T Consensus 89 ~~~C~~--~~~--m~G~l 102 (104)
T PF13473_consen 89 EFYCTM--HPN--MKGTL 102 (104)
T ss_dssp EEB-SS--S-T--TB---
T ss_pred EEEcCC--CCc--ceecc
Confidence 999997 554 44444
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.53 E-value=0.016 Score=48.04 Aligned_cols=82 Identities=10% Similarity=0.016 Sum_probs=55.1
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCC-CCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPA-SRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVG 490 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG 490 (543)
..+.++.|++|.|+.. +...|.+.+=- +.+... +.... +..-.+..+.+|....+.|. .+|
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFVA----------DGMPAGADSDYV----PPGDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEET----------TSSHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEec----------cccccccccccc----CccccceecCCCCEEEEEeC--CCe
Confidence 3578899999988766 45677766422 111000 00000 11115677888888777776 999
Q ss_pred cceeeecchhhhhcccEEEEEEe
Q 009127 491 MWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 491 ~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|.|+|- - |...||-+.+.|.
T Consensus 79 ~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999 4 9999999999884
No 59
>PRK02710 plastocyanin; Provisional
Probab=96.10 E-value=0.022 Score=48.99 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=50.6
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|+|+ |.+...|.+.+.+.. .+ ......+.+|+...+.|.. ||.|
T Consensus 48 ~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~---------~~--------------~~~~~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKLAPHNAVFDGAK---------EL--------------SHKDLAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEEE--ECCCCCceEEecCCc---------cc--------------cccccccCCCCEEEEEecC--CEEE
Confidence 3678899998875 666678887654211 00 0112346678887766654 9999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|+|= -|...||-+.+.|+
T Consensus 101 ~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEcC--CCccCCcEEEEEEC
Confidence 99998 59999999999883
No 60
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=96.04 E-value=0.061 Score=55.20 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=54.1
Q ss_pred cCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC--CCCCcCCCCCeEEEEEEeCCCcccceecCCch
Q 009127 55 QFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY--GTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL 132 (543)
Q Consensus 55 ~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p--~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~ 132 (543)
++--..+.|+.|+ +.+.|+|....++.+-. .+|+. +....|.||.+..+.+++ ++|+|-|+| +
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C--~ 104 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTC--G 104 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeec--C
Confidence 3434689999996 89999999765533211 01221 123578999999988877 499999999 3
Q ss_pred hhhhccceeEEEEecCC
Q 009127 133 FHKAAGAFGGIRIWSRP 149 (543)
Q Consensus 133 ~q~~~Gl~G~liV~~~~ 149 (543)
.+ ..+.|.|+|.+..
T Consensus 105 ~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 105 LL--TNPKGKLIVKGEA 119 (375)
T ss_pred cC--CCCCceEEEeCCC
Confidence 32 3358999998753
No 61
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.01 E-value=0.024 Score=61.50 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=56.6
Q ss_pred eEEecCCCcEEEEEEEeCC---CCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC
Q 009127 412 SVMAANFREFVEIVFQNWE---DTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN 488 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn 488 (543)
..+.++.|+.|.+++.|.+ +..|-|-|-++.. -..+.|+....+.|+++.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCC
Confidence 3477899999999999974 4567777643321 124557899999999999
Q ss_pred cccceeeecchhhh-hcccEEEEEEe
Q 009127 489 VGMWNIRSENWARQ-YLGQQFYLRVY 513 (543)
Q Consensus 489 pG~w~~HCHil~He-d~GMm~~~~V~ 513 (543)
||.|.+||...-|. |.+|...+.|+
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEE
Confidence 99999999885443 45888888875
No 62
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.54 E-value=0.12 Score=47.75 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCC-----eeEEEEEcCcccc-----ccccCeEEEcCCCe
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGH-----SMKLVEVEGSHTL-----QNTYAALDIHLGQT 260 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~-----~~~via~DG~~~~-----p~~~~~v~l~pgeR 260 (543)
+.+-+||.......+-+..|-++.++++|.+.. .|.|-+--- ..-.+..||.-+. +-....-=|.+||+
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 478899987657899999999999999999875 677766322 1235667775541 11112224569999
Q ss_pred EEEEEEeCCCCcceEEEEeec
Q 009127 261 YSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 261 ~dv~v~~~~~~g~y~i~~~~~ 281 (543)
+...+... ++|.||+.|.-.
T Consensus 153 ~~~~~~~l-~aG~YwlvC~ip 172 (196)
T PF06525_consen 153 ASGVYNDL-PAGYYWLVCGIP 172 (196)
T ss_pred eeEEEccC-CCceEEEEccCC
Confidence 99777544 699999998653
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.18 Score=44.59 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=65.5
Q ss_pred cCCCceEEEecCCEEEEEEEECCC--CCcee---------ecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcc
Q 009127 55 QFPGPQIDAVTNDNLIISVYNYLR--EPFLI---------SWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIG 123 (543)
Q Consensus 55 ~~pgP~i~v~~Gd~v~i~~~N~l~--~~~~i---------H~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~G 123 (543)
.+++-.+.++.|++++..++|.-. ...++ -.|.... +.+++--.....+.||++-+..|..+ ++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~ft-~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVFT-GAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEec-CCc
Confidence 457778999999999999999743 11111 1123221 13333222336699999999999995 799
Q ss_pred cceecCCchhhhhccceeEEEEec
Q 009127 124 SYFYFPSFLFHKAAGAFGGIRIWS 147 (543)
Q Consensus 124 t~wYH~H~~~q~~~Gl~G~liV~~ 147 (543)
.|=+-|-..+++..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999999864
No 64
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.23 E-value=0.1 Score=44.49 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=48.3
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|.|+..+. .|- |....... +.+. +.+.-.++.. +.++++.+|.+
T Consensus 16 ~v~V~~GdTV~f~n~d~---~Hn---------v~~~~~~~--p~g~-----------~~~~s~~g~~--~~~tF~~~G~Y 68 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDK---GHN---------VETIKGMI--PEGA-----------EAFKSKINEE--YTVTVTEEGVY 68 (116)
T ss_pred EEEECCCCEEEEEECCC---Cee---------EEEccCCC--cCCc-----------ccccCCCCCE--EEEEeCCCEEE
Confidence 47789999999999875 232 22211100 0110 0111123454 44555789999
Q ss_pred eeeecchhhhhcccEEEEEEecCC
Q 009127 493 NIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
-|+|=. |..+||-+.+.|.+|.
T Consensus 69 ~Y~C~p--H~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 69 GVKCTP--HYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEcCC--CccCCCEEEEEECCCC
Confidence 999995 9999999999998863
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.85 E-value=0.074 Score=46.92 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=66.3
Q ss_pred EecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccce
Q 009127 414 MAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWN 493 (543)
Q Consensus 414 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 493 (543)
+.++.|++++.++.|..+.-|=|=+= ++....+ .+.-. ....-..---..++.+.||.+..|-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~--~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHM--ILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHh--hhCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 45788999999999998877766553 2221111 01000 00000001234689999999999999999999999
Q ss_pred eeecchhhhhcccEEEEEEe
Q 009127 494 IRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 494 ~HCHil~Hed~GMm~~~~V~ 513 (543)
|-|=|-.|-+.||-..++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999884
No 66
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.77 E-value=0.16 Score=40.50 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=46.4
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|++|.| .|.+...|-.+.+...+ +.. .+.. ..+.++.... ++++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~-------------~~~~-~~~~~g~~~~--~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEA-------------ALKG-PMMKKEQAYS--LTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------ccc-------------cccc-cccCCCCEEE--EECCCCEEE
Confidence 467889999987 57777788888653211 000 0111 1234555444 566889999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|||=+ |. .|-+.+.|.
T Consensus 67 ~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred EEEcCC--CC--CCeEEEEEC
Confidence 999998 65 588888773
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.63 E-value=0.15 Score=43.78 Aligned_cols=74 Identities=9% Similarity=0.006 Sum_probs=49.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCc-hhhhh
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSF-LFHKA 136 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~-~~q~~ 136 (543)
.+.|.+..|++|++.+++. +--+++...++.. +..+.||+.....|++ +++|+|++.|.- -..-.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4789999999999999995 3333443333321 2446799999999999 589999999982 12222
Q ss_pred ccceeEEEE
Q 009127 137 AGAFGGIRI 145 (543)
Q Consensus 137 ~Gl~G~liV 145 (543)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 236666654
No 68
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.41 E-value=0.24 Score=42.33 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=54.7
Q ss_pred CCceEEEec-CCEEEEEEEECCCCCceeecC--------------------cccCCCCCCCC-CCCCCCCcCCCCCeEEE
Q 009127 57 PGPQIDAVT-NDNLIISVYNYLREPFLISWN--------------------GLQQRRNSWQD-GVYGTTCPIPPGKNFTY 114 (543)
Q Consensus 57 pgP~i~v~~-Gd~v~i~~~N~l~~~~~iH~H--------------------G~~~~~~~~~D-G~p~tq~~i~PG~~~~y 114 (543)
-=..|.|+. |.+|.|+|+|.-..+...--| |+...-.+..| -+.....-|.|||+.+.
T Consensus 14 d~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 14 NTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 345899998 478999999984322111111 11111111111 11112245899999999
Q ss_pred EEEeCC-Cccc-ceecCCchhhhhccceeEEE
Q 009127 115 VLQAKD-QIGS-YFYFPSFLFHKAAGAFGGIR 144 (543)
Q Consensus 115 ~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 144 (543)
.|+++. ++|+ |-|-|....|.. .|.|.|.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 999863 4786 999999888876 5888875
No 69
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.11 E-value=1.1 Score=38.51 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=50.5
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
...+.++.|++++|++-+... .|.|.|.+..++ +.+-||+.-.+.++++ .+|.|+++|...
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPGTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSEEEEEEE-SS
T ss_pred cceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeec-cCCcEEEcCccc
Confidence 578999999999999998555 688888876544 3567888899999998 799999999865
Q ss_pred cCC
Q 009127 282 FTP 284 (543)
Q Consensus 282 ~~~ 284 (543)
.+.
T Consensus 106 CG~ 108 (120)
T PF00116_consen 106 CGA 108 (120)
T ss_dssp SST
T ss_pred cCc
Confidence 443
No 70
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.93 E-value=0.59 Score=39.77 Aligned_cols=73 Identities=11% Similarity=-0.005 Sum_probs=47.5
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|.|+-+.. ...|-. .+.+.+.|+. ......+++...+.| +.||.|
T Consensus 43 ~ltV~~GdTVtw~~~~d-~~~HnV---------~s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE-GGGHNV---------VSDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEECCC-CCCEEE---------EECCCCCccc--------------cccccCCCCEEEEEe--cCCcEE
Confidence 36788999999886542 234443 2222233321 111234566665555 789999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|+|=. |..+||-..+.|.
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEccC--CCCCCCEEEEEEC
Confidence 999997 9999999999883
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=89.50 E-value=1.1 Score=42.24 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=55.5
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+.+.+ ..|.|.+- +-+ ...| +-||....+.|+++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf~ip-------~~~-----------------~k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSFWVP-------ELG-----------------GKID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhccccc-------ccC-----------------ceEE---ecCCcEEEEEEEeCCCEE
Confidence 3467899999999999864 34554442 221 1223 336788899999999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+...|--.-.. +..|...+.|.+++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHH
Confidence 99999884432 57899999988765
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=88.65 E-value=3.1 Score=39.20 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=55.4
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCc-hhhhh
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSF-LFHKA 136 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~-~~q~~ 136 (543)
...|.+..|+.|++++++.. .+ ||...+. . |+ +..+-||..-+..|++ +++|+|...|.- -....
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~---~-~~---k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VI--HSFWVPE---L-GG---KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hh--hcccccc---c-Cc---eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 36899999999999999852 22 5554321 1 11 3456799999999998 589999999983 12222
Q ss_pred ccceeEEEEecCC
Q 009127 137 AGAFGGIRIWSRP 149 (543)
Q Consensus 137 ~Gl~G~liV~~~~ 149 (543)
..|.+.++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 4689999988753
No 73
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=87.43 E-value=0.78 Score=47.36 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=54.2
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCch-hhhhc
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL-FHKAA 137 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~~ 137 (543)
-+..|++||.|.+.++|-......+| |.-.. .-|+- ..+.|-++-.|.|.+ +.+|.+||.|... .-+.+
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~v~---~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYGVN---MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeeec----cCceE---EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHH
Confidence 37889999999999888765444443 33211 12221 457889999999999 5899999998633 33344
Q ss_pred cceeEEEEec
Q 009127 138 GAFGGIRIWS 147 (543)
Q Consensus 138 Gl~G~liV~~ 147 (543)
-|+|-++|+.
T Consensus 628 em~~rmlve~ 637 (637)
T COG4263 628 EMAGRMLVEA 637 (637)
T ss_pred hhccceeecC
Confidence 5778888863
No 74
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=87.26 E-value=6.4 Score=31.25 Aligned_cols=65 Identities=14% Similarity=0.323 Sum_probs=36.6
Q ss_pred EEEEEEEcCCcceEEEEEe-CCe--eEEEEEcCccccc--------cccCeEEEcCCCeEEEEEEeCCC---CcceEEEE
Q 009127 213 YRFRISNVGLTTSINFRIQ-GHS--MKLVEVEGSHTLQ--------NTYAALDIHLGQTYSVLVTMDQA---PQDYYIVV 278 (543)
Q Consensus 213 ~rlRiiN~~~~~~~~~~i~-g~~--~~via~DG~~~~p--------~~~~~v~l~pgeR~dv~v~~~~~---~g~y~i~~ 278 (543)
..|.+.|.+.. ...|.+. |+. |.|...+|..+-- .......|.|||...+..+.+.. ||.|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 46778888875 5666653 444 4444446665521 12457899999999999988863 79998864
No 75
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=86.25 E-value=2.9 Score=36.16 Aligned_cols=74 Identities=9% Similarity=-0.022 Sum_probs=47.6
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|+|+-. +...|-.+.= +... +..-+++....+.....-| +.||.+
T Consensus 55 ~v~v~pGDTVtw~~~--d~~~Hnv~~~---------~~~~-------------~~g~~~~~~~~~~s~~~Tf--e~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTWVNT--DSVGHNVTAV---------GGMD-------------PEGSGTLKAGINESFTHTF--ETPGEY 108 (128)
T ss_pred EEEECCCCEEEEEEC--CCCCceEEEe---------CCCC-------------cccccccccCCCcceEEEe--cccceE
Confidence 367889999998765 3346664432 1111 1122333333345555544 459999
Q ss_pred eeeecchhhhhcccEEEEEEec
Q 009127 493 NIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~ 514 (543)
.|.|=. |.-+||-..+.|.+
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999999 99999999998853
No 76
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=86.07 E-value=3.4 Score=40.19 Aligned_cols=78 Identities=10% Similarity=-0.046 Sum_probs=58.5
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCC-chhhhhc
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPS-FLFHKAA 137 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H-~~~q~~~ 137 (543)
..|.+..|.+|++.++=. +--++....++.. +...-||...++.+++ +++|+|.-+|+ ..+....
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH~ 202 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGHS 202 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCcc
Confidence 899999999999988766 3333444444321 3456789999999998 68999999998 3355555
Q ss_pred cceeEEEEecCCC
Q 009127 138 GAFGGIRIWSRPR 150 (543)
Q Consensus 138 Gl~G~liV~~~~~ 150 (543)
.|.|.++|.++++
T Consensus 203 ~M~~~v~vvs~~~ 215 (247)
T COG1622 203 FMRFKVIVVSQED 215 (247)
T ss_pred cceEEEEEEcHHH
Confidence 7999999998653
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=80.93 E-value=4.6 Score=39.27 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=55.9
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.|++.+... +--|.|.+-+-.+ -+.+-||-...+.+.++.||.
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~---------------------------k~d~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG---------------------------KIDAIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc---------------------------eeeecCCceEEEEEecCCCeE
Confidence 446788999999999977 3445555443222 222335677889999999999
Q ss_pred ceeeecchhh-hhcccEEEEEEecCCC
Q 009127 492 WNIRSENWAR-QYLGQQFYLRVYSPAN 517 (543)
Q Consensus 492 w~~HCHil~H-ed~GMm~~~~V~~p~~ 517 (543)
|-.+|+.+-= -+..|-+.+.|+++++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 9999999764 3566777788877664
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=79.32 E-value=4.1 Score=32.36 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=28.6
Q ss_pred eEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCC----CcCCCCCeEEEEEEeCCC---ccccee
Q 009127 60 QIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTT----CPIPPGKNFTYVLQAKDQ---IGSYFY 127 (543)
Q Consensus 60 ~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq----~~i~PG~~~~y~f~~~~~---~Gt~wY 127 (543)
+|+..-|.+..+.|.|.-.+. .| -|++|-..+| ..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---VW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---EE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---EE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 555556666666665442211 00 2677776544 459999999999999632 688753
No 79
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=75.77 E-value=18 Score=31.04 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=51.1
Q ss_pred cceEEEec-CCEEEEEEEEcCCcc----eEEEEEeC-CeeEEEE-------EcCccccccc----cCeEEEcCCCeEEEE
Q 009127 202 GYTFTVEP-GRTYRFRISNVGLTT----SINFRIQG-HSMKLVE-------VEGSHTLQNT----YAALDIHLGQTYSVL 264 (543)
Q Consensus 202 ~p~~~v~~-G~~~rlRiiN~~~~~----~~~~~i~g-~~~~via-------~DG~~~~p~~----~~~v~l~pgeR~dv~ 264 (543)
...|+|++ ++.+++.|-|.|..- .|++-|-. -++.-++ .|-.|+++-. ..+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 56799998 488999999997531 34444421 1233332 2444554322 234578999999999
Q ss_pred EEeCC-CCc-ceEEEEee
Q 009127 265 VTMDQ-APQ-DYYIVVSS 280 (543)
Q Consensus 265 v~~~~-~~g-~y~i~~~~ 280 (543)
|+++. .+| +|.+.|+-
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 99864 355 69999863
No 80
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=74.55 E-value=22 Score=32.50 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=56.6
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCC--CC---CCCCCCCC--CCCcceeEEeCCCCEEEEEEE
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWT--PA---SRTRYNLR--DTVARSTTQVYPRSWTAIYMA 485 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~--~~---~~~~~~~~--~p~~rDTv~vp~~g~v~irf~ 485 (543)
.+-++.|-.|.+++.|.+..+|-+- |+..+.. +. +. +...++.. .+..-..=-+.+|.....-+.
T Consensus 86 tIyiPaGw~V~V~f~N~e~~pHnl~-------iv~n~t~-~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESLPHNLK-------LLPNSTQ-TPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCCCccEE-------EecCCCC-CCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 3557889999999999987776543 4433221 11 00 00000000 000000111224555556666
Q ss_pred ecCcccceeeecchhhhhcccEEEEEEecC
Q 009127 486 LDNVGMWNIRSENWARQYLGQQFYLRVYSP 515 (543)
Q Consensus 486 adnpG~w~~HCHil~Hed~GMm~~~~V~~p 515 (543)
.-.||.+.+=|-+.-|...||-..+.|.+.
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 678999999999999999999999987543
No 81
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=69.53 E-value=23 Score=36.15 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=34.0
Q ss_pred eeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCce--------eecCcccCCCC--C------CCCCCCC-CCCcCC
Q 009127 45 VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL--------ISWNGLQQRRN--S------WQDGVYG-TTCPIP 107 (543)
Q Consensus 45 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~--------iH~HG~~~~~~--~------~~DG~p~-tq~~i~ 107 (543)
.+.++..-+=+.||=+++++ ++|+|+-+++.. ++|-.-.+... . +.+|.-. .+.||+
T Consensus 249 V~~~v~~A~Y~vpgR~l~~~------l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTMT------LTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEEE------EEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEEE------EEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 34444444446778787654 888888775542 33322111100 0 0112112 236899
Q ss_pred CCCeEEEEEEeCC
Q 009127 108 PGKNFTYVLQAKD 120 (543)
Q Consensus 108 PG~~~~y~f~~~~ 120 (543)
|||+.+.+..+.|
T Consensus 323 PGETrtl~V~a~d 335 (381)
T PF04744_consen 323 PGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEEEEEEEE-
T ss_pred CCceEEEEEEeeh
Confidence 9999999999954
No 82
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=68.49 E-value=41 Score=34.29 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=18.0
Q ss_pred CCCC-CCCcCCCCCeEEEEEEeCC
Q 009127 98 GVYG-TTCPIPPGKNFTYVLQAKD 120 (543)
Q Consensus 98 G~p~-tq~~i~PG~~~~y~f~~~~ 120 (543)
|.-. .+.||.|||+.+.+..+.|
T Consensus 331 GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 331 GLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred cceeCCCCCcCCCcceEEEEEEeh
Confidence 4444 4578999999999999853
No 83
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=66.93 E-value=31 Score=35.70 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=56.0
Q ss_pred eEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCC
Q 009127 192 GLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAP 271 (543)
Q Consensus 192 ~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~ 271 (543)
.++|+........+++++|+ ++|.+.|.+.. ...| .++ +|..+. -..=.|+||.+..+.+.+ .|
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~-~~Ef-------e~~--~~~~vv---~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQK-ALEW-------EIL--KGVMVV---EERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCC-cceE-------Eee--cccccc---ccccccCCCCceEEEEec--CC
Confidence 46676665557789999996 89999999875 3333 333 222110 011278999988888777 48
Q ss_pred cceEEEEeeccCCCccceEEEEEecCC
Q 009127 272 QDYYIVVSSRFTPRVLTTTAILHYSNS 298 (543)
Q Consensus 272 g~y~i~~~~~~~~~~~~~~~il~y~~~ 298 (543)
|+|.+.|... + ...+.+.+.|.
T Consensus 97 GtY~~~C~~~--~---~~~g~l~Vtg~ 118 (375)
T PRK10378 97 GEYDMTCGLL--T---NPKGKLIVKGE 118 (375)
T ss_pred ceEEeecCcC--C---CCCceEEEeCC
Confidence 9999999432 1 12456777664
No 84
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=65.54 E-value=96 Score=27.29 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=53.4
Q ss_pred CeEEEcCCCCCcceEEEecC-CEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccccc-------ccCeEEEcCCCeE-
Q 009127 191 DGLLINGRGWNGYTFTVEPG-RTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQN-------TYAALDIHLGQTY- 261 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G-~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~-------~~~~v~l~pgeR~- 261 (543)
+.-.||.-+ .+...-.-| .+|.|.+-|.|.. .+.++...++|+ +||..+.|. .-+.+.|.|||--
T Consensus 51 dFaIIndPg--~i~~~~~~g~~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ 124 (154)
T COG3354 51 DFAIINDPG--QIPYVGTDGPYTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGR 124 (154)
T ss_pred cEEEecCCC--CCccccCCCceEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceee
Confidence 445566555 333322212 5789999999986 346788888887 899877653 3467889999988
Q ss_pred EEEEEeCCCCcceEEEEee
Q 009127 262 SVLVTMDQAPQDYYIVVSS 280 (543)
Q Consensus 262 dv~v~~~~~~g~y~i~~~~ 280 (543)
++.+... ..|.-.+....
T Consensus 125 ev~vn~~-lSGyhri~V~~ 142 (154)
T COG3354 125 EVTVNEA-LSGYHRIVVSL 142 (154)
T ss_pred EEEeccC-CCcceEEEEEc
Confidence 5555444 34544555443
No 85
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=64.03 E-value=63 Score=25.77 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=39.8
Q ss_pred EEecCCEE--EEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeE-EEcCCCeEEEEEEeCC-CCcceEEEEee
Q 009127 206 TVEPGRTY--RFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAAL-DIHLGQTYSVLVTMDQ-APQDYYIVVSS 280 (543)
Q Consensus 206 ~v~~G~~~--rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v-~l~pgeR~dv~v~~~~-~~g~y~i~~~~ 280 (543)
.+.+|+.+ .+.+-|.|....-.+.+. +..||..+ ....+ .|.||+...+.+.... .+|.|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 45677765 567899987644444333 34555554 23344 7899999888887763 57888887754
No 86
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=63.58 E-value=33 Score=27.45 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCceEEEe---cCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceec
Q 009127 57 PGPQIDAV---TNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYF 128 (543)
Q Consensus 57 pgP~i~v~---~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH 128 (543)
+.|.+.++ ....|+|++.|.-.....+....... ..+.+ .+..|+||++.+..|.+. ..--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 35666665 24589999999987777776655221 11111 346799999999999883 3344554
No 87
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=62.96 E-value=37 Score=26.33 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=30.6
Q ss_pred EecCCE--EEEEEEEcCCcc--eEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC--C--CCcceEEEE
Q 009127 207 VEPGRT--YRFRISNVGLTT--SINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD--Q--APQDYYIVV 278 (543)
Q Consensus 207 v~~G~~--~rlRiiN~~~~~--~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~--~--~~g~y~i~~ 278 (543)
+.+|+. +++.+-|.+... ...+++..-.=|.+..+ |.... .|.||+...+.|+.. . .+|+|.|.+
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~-----~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS-----PASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E-----EEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC-----ccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 356765 467788988642 34444432211112222 22222 789998776666553 2 478999887
Q ss_pred ee
Q 009127 279 SS 280 (543)
Q Consensus 279 ~~ 280 (543)
..
T Consensus 74 ~a 75 (78)
T PF10633_consen 74 TA 75 (78)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 88
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=62.50 E-value=95 Score=26.19 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=13.4
Q ss_pred EEEEEEcCCc-ceEEEEEeCCe
Q 009127 214 RFRISNVGLT-TSINFRIQGHS 234 (543)
Q Consensus 214 rlRiiN~~~~-~~~~~~i~g~~ 234 (543)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5788887764 45666665544
No 89
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=60.97 E-value=4.5 Score=33.16 Aligned_cols=85 Identities=16% Similarity=-0.030 Sum_probs=23.2
Q ss_pred CCchhHHHHHHHHHHHHHhhccc-cCCCeEEEEEEEEEE-----EecCCCeeEEEEEECC--cCCCceE-EEecCCEEEE
Q 009127 1 MRDSRVLCSLIALLLSLAVHGVY-GDSPYRFFTWKITYG-----DIYPLGVKQQGILING--QFPGPQI-DAVTNDNLII 71 (543)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-----~~~~~g~~~~~~~~Ng--~~pgP~i-~v~~Gd~v~i 71 (543)
|+..|++++.++++++.+.-.+. +.+.|-+-.=.|.+. .+..||+..++ =|. +--||.| .+++|..|-.
T Consensus 1 Mk~L~~La~~L~alaLa~p~~~~a~~~~TFE~~GvV~~v~~e~~lv~IDgq~YrL--Pn~v~q~~~p~ifqvrpGsvVS~ 78 (118)
T PF14481_consen 1 MKSLRLLATALFALALACPGLAWAAEPHTFEGAGVVQEVQPEKNLVDIDGQHYRL--PNRVAQQGGPVIFQVRPGSVVSF 78 (118)
T ss_dssp --------------------------TTEEEEEEEEEEEEGGGTEEEETTEEEE----TT-EETTEEGGGT--TT-EEEE
T ss_pred CcchHHhhhhhhhhhhccccceeccCcceecccceEEEeecccceEEEcCcEEeC--CchhhhcCCceEEEEcCCcEEEE
Confidence 67778877766666444432232 223322222222222 23455544322 111 1247888 9999999766
Q ss_pred E--EEECCCCCceeecCc
Q 009127 72 S--VYNYLREPFLISWNG 87 (543)
Q Consensus 72 ~--~~N~l~~~~~iH~HG 87 (543)
- +.-.+++-++|-+|-
T Consensus 79 sGsvss~~p~I~si~i~r 96 (118)
T PF14481_consen 79 SGSVSSPLPTITSIYILR 96 (118)
T ss_dssp EEE--SSS-EEEEEEE-H
T ss_pred eeeecCCCcccceEEEEe
Confidence 3 222344444555543
No 90
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=60.59 E-value=49 Score=24.91 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=37.0
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEe
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVS 279 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~ 279 (543)
.-.++++.|+++++.+-+.+.. ..+.+...+|..+....... -..+..-.+.+.+. .+|+|.|+..
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~d---------~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSGD---------ADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTSS---------EEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCCC---------eEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 3468899999988888666652 22555555554332211111 11122333445555 6899999864
No 91
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.55 E-value=44 Score=31.25 Aligned_cols=76 Identities=8% Similarity=0.124 Sum_probs=55.1
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|+.+++.+... +-.|.|.+-... ..+|.+ ||....+.|.++.||.+
T Consensus 117 ~l~lp~g~~v~~~ltS~-DViHsf~vp~l~------------------------~k~d~~---PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVIHSFSVPDLN------------------------LKMDAI---PGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccccceeccccC------------------------ceeecC---CCceEEEEEEcCCCEEE
Confidence 35678899999999876 345666553321 123443 67888899999999999
Q ss_pred eeeecchhhh-hcccEEEEEEecCC
Q 009127 493 NIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 493 ~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
-.-|.-+-=. +..|-..++|.+++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 9999975533 66788888888765
No 92
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.24 E-value=29 Score=33.42 Aligned_cols=77 Identities=4% Similarity=0.063 Sum_probs=54.4
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+.+.+ -.|.|.+- +-+. ..|. -||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~D-ViHsf~ip-------~~~~-----------------k~d~---~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD-VIHSWTVP-------SLGV-----------------KVDA---IPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc-cccceecc-------ccCc-----------------eeEC---CCCcceeEEEEeCCCEE
Confidence 4567889999999999864 44554442 2211 1232 25777888899999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+...|.-+-.. |..|-..++|.+++
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECHH
Confidence 99999986655 66777788887654
No 93
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=54.82 E-value=15 Score=31.08 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=39.4
Q ss_pred EEEEECCCCCc---eeecCcccCCC---CCCCCCCCCCCCcCCCCCeEEEEEEeC--CCcccceecCCchhhhhccceeE
Q 009127 71 ISVYNYLREPF---LISWNGLQQRR---NSWQDGVYGTTCPIPPGKNFTYVLQAK--DQIGSYFYFPSFLFHKAAGAFGG 142 (543)
Q Consensus 71 i~~~N~l~~~~---~iH~HG~~~~~---~~~~DG~p~tq~~i~PG~~~~y~f~~~--~~~Gt~wYH~H~~~q~~~Gl~G~ 142 (543)
|++.|.-..+. +=|||=-...+ .-.-.||.|.|..|.||++|+|.=-++ ...|+ |.|-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~--------------M~Gh 99 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT--------------MQGH 99 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce--------------EEEE
Confidence 55666655433 55776432211 112457777889999999999975442 23555 6666
Q ss_pred EEEecCCC
Q 009127 143 IRIWSRPR 150 (543)
Q Consensus 143 liV~~~~~ 150 (543)
....+.++
T Consensus 100 Y~M~~e~G 107 (126)
T COG2967 100 YEMIDEDG 107 (126)
T ss_pred EEEecCCC
Confidence 66555443
No 94
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=54.68 E-value=48 Score=29.93 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=51.0
Q ss_pred EecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccce
Q 009127 414 MAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWN 493 (543)
Q Consensus 414 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 493 (543)
+.++.|..+++.+...+ -.|.|.+-. .+ ...|.+ ||-...+.+.++.||.+.
T Consensus 75 LvLP~g~~Vr~~lTS~D-VIHSF~VP~-------lg-----------------vK~Dav---PGr~n~l~~~~~~~G~y~ 126 (162)
T PTZ00047 75 LTLPTRTHIRFLITATD-VIHSWSVPS-------LG-----------------IKADAI---PGRLHKINTFILREGVFY 126 (162)
T ss_pred EEEeCCCEEEEEEEeCc-cceeeeccc-------cC-----------------ceeecc---CCceEEEEEecCCCeEEE
Confidence 55788999999998774 346665532 21 123443 566677888899999999
Q ss_pred eeecchhhh-hcccEEEEEEecCC
Q 009127 494 IRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 494 ~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
..|.-+-=. +..|-..+.|.+++
T Consensus 127 gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 127 GQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEcchhcCcCccCceEEEEEeCHH
Confidence 999975422 34577777776654
No 95
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=54.24 E-value=86 Score=27.83 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=35.9
Q ss_pred eEEEecCCEEEEEEEECCCCCc---eeecCcccCC------CCCCCCCCC-C-----CCCcCCCCCeEEEEEEeC
Q 009127 60 QIDAVTNDNLIISVYNYLREPF---LISWNGLQQR------RNSWQDGVY-G-----TTCPIPPGKNFTYVLQAK 119 (543)
Q Consensus 60 ~i~v~~Gd~v~i~~~N~l~~~~---~iH~HG~~~~------~~~~~DG~p-~-----tq~~i~PG~~~~y~f~~~ 119 (543)
.=.++.|.+..|.+.=...+.+ .--.||+..- +-++.||-. + .-||+.+||.++|.+..+
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 5567788887777665554322 1223343221 122355543 1 249999999999999885
No 96
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=53.11 E-value=25 Score=28.59 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=40.0
Q ss_pred EecCCEEEEEEE--EcCCcceEEEEEeCC--eeEEEEEcCccccccccCeE-EEcCCCeEEEEEEeCCC--CcceEEEEe
Q 009127 207 VEPGRTYRFRIS--NVGLTTSINFRIQGH--SMKLVEVEGSHTLQNTYAAL-DIHLGQTYSVLVTMDQA--PQDYYIVVS 279 (543)
Q Consensus 207 v~~G~~~rlRii--N~~~~~~~~~~i~g~--~~~via~DG~~~~p~~~~~v-~l~pgeR~dv~v~~~~~--~g~y~i~~~ 279 (543)
.+|||++.||++ +..+ ... ...+. .++|..-+|..+. .... .......++..+.+++. .|.|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~--~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFK--PPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCS--CESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccc--cccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 579999999988 6652 100 12222 3455555555542 1222 34678888888888764 599999987
Q ss_pred ec
Q 009127 280 SR 281 (543)
Q Consensus 280 ~~ 281 (543)
..
T Consensus 85 ~~ 86 (99)
T PF01835_consen 85 TD 86 (99)
T ss_dssp ET
T ss_pred Ec
Confidence 63
No 97
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=53.09 E-value=39 Score=32.50 Aligned_cols=77 Identities=6% Similarity=0.054 Sum_probs=54.2
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+...+- . |.|+|-+-+ ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-i-------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV-L-------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECcc-c-------ccccccccc-----------------cceecC---CCceEEEEEecCCcEE
Confidence 45668999999999998753 2 355553332 123444 5777788899999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+..-|.-+-.. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 99999875544 56677778777654
No 98
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=52.41 E-value=17 Score=31.47 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=15.6
Q ss_pred CCCCCCCCCcCCCCCeEEEEE
Q 009127 96 QDGVYGTTCPIPPGKNFTYVL 116 (543)
Q Consensus 96 ~DG~p~tq~~i~PG~~~~y~f 116 (543)
-+||.|.|.-|.||++|.|.=
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred CCceecCCceECCCCCeEEeC
Confidence 456666677799999877753
No 99
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=52.27 E-value=1.1e+02 Score=24.82 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=36.1
Q ss_pred EEecCCEE--EEEEEEcCCcceEEEEEe--C---CeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC-C-CCcceE
Q 009127 206 TVEPGRTY--RFRISNVGLTTSINFRIQ--G---HSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD-Q-APQDYY 275 (543)
Q Consensus 206 ~v~~G~~~--rlRiiN~~~~~~~~~~i~--g---~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~-~-~~g~y~ 275 (543)
.+..|++| .+.|.|.|.. ..+|++. . ..|.+ +| ..-.|+||+..++.|.+. . ..|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 45667766 5889999975 4455543 2 11222 22 123699999999999887 3 356554
No 100
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.60 E-value=41 Score=32.41 Aligned_cols=77 Identities=6% Similarity=-0.000 Sum_probs=55.0
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+-++.|+.+++.+...+-. |.|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------ccccC---CCceEEEEEEeCCceE
Confidence 346678999999999987532 4666655432 23443 5777788899999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+-..|.-+--. |..|-..++|.+++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHH
Confidence 99999875533 56777778877654
No 101
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.22 E-value=1.2e+02 Score=28.42 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=45.0
Q ss_pred ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 203 p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
..+.++.|+++||++--.. -.|.|.+.+...+ +..-||..-.+.++++ .+|.|...|....
T Consensus 116 ~~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~-~~G~y~g~C~e~C 176 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLK----------------MDAIPGRINHLFFCPD-RHGVFVGYCSELC 176 (194)
T ss_pred ceEEEeCCCEEEeeeecCc--cccceeccccCce----------------eecCCCceEEEEEEcC-CCEEEEEEeehhh
Confidence 4588999999999886544 3577776654433 3445788888888888 7999999997643
No 102
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=48.49 E-value=73 Score=26.51 Aligned_cols=71 Identities=11% Similarity=0.320 Sum_probs=47.0
Q ss_pred EEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCC
Q 009127 70 IISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRP 149 (543)
Q Consensus 70 ~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 149 (543)
.|+++|.|.....|..|=-. . |...| ...+.||+++..+|.. +-.|+--|.|+... ....-..-+.|....
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S--~----d~Dlg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~~ 72 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS--K----DDDLG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRSS 72 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC--C----CccCC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEecc
Confidence 48899999877777777641 1 22222 1458999999999986 34677778899776 211136666666543
No 103
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.20 E-value=1.1e+02 Score=29.34 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=45.9
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
...+.+..|+.+||++-+... .|.|.+.+...+ +..-||..-.+.++++ .+|.|+..|...
T Consensus 139 ~n~l~lP~~~~v~~~~ts~DV--iHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~ 199 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSADV--IHSWTVPSLGVK----------------VDAIPGRLNQLSFEPK-RPGVFYGQCSEI 199 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCcc--ccceeccccCce----------------eECCCCcceeEEEEeC-CCEEEEEECccc
Confidence 357889999999999987544 566666554333 3455788888888888 699999988764
Q ss_pred c
Q 009127 282 F 282 (543)
Q Consensus 282 ~ 282 (543)
.
T Consensus 200 C 200 (228)
T MTH00140 200 C 200 (228)
T ss_pred c
Confidence 3
No 104
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=44.23 E-value=57 Score=31.32 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=54.6
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
-+.++.|+.+++.+...+ -.| +|+|-+-+ ..+|.+ ||-...+.|++|.||.|
T Consensus 140 el~lP~g~pV~~~ltS~D-ViH-------SF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS-VMN-------SFFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECc-hhh-------hhhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEEE
Confidence 356789999999999874 234 45554332 234655 57778899999999999
Q ss_pred eeeecchhhh-hcccEEEEEEecCC
Q 009127 493 NIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 493 ~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
.-.|--+-=. |..|...+.|.+++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHH
Confidence 9999764422 56788888887664
No 105
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=42.38 E-value=76 Score=23.72 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=29.9
Q ss_pred EEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEE
Q 009127 205 FTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSV 263 (543)
Q Consensus 205 ~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv 263 (543)
+++.+|+..+||.-.. ..+.+.+-..++.. +|. .+-+.|.|||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 6788999999985442 23677777777753 442 23356667776653
No 106
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=39.85 E-value=21 Score=29.36 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=27.8
Q ss_pred EEECCcCCCceEEEecCCEEEEEEEECCCCCcee
Q 009127 50 ILINGQFPGPQIDAVTNDNLIISVYNYLREPFLI 83 (543)
Q Consensus 50 ~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~i 83 (543)
..+||+.-=|.=.|+.||.|+|++.|..-.-..+
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEEEEEE
Confidence 5789998889999999999999999986543333
No 107
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=39.13 E-value=1.1e+02 Score=25.63 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=28.6
Q ss_pred EEEEEEEEcCCc-ceEEEEEeCC-eeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC
Q 009127 212 TYRFRISNVGLT-TSINFRIQGH-SMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 212 ~~rlRiiN~~~~-~~~~~~i~g~-~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
.|+++|+|-+.. ..+.+.+.|. .+++.. ..+.+.|.||+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEEEEEEEEE
Confidence 589999999974 5667777774 233311 23678999999888776554
No 108
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=38.46 E-value=1.1e+02 Score=29.30 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=53.4
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+-++.|+.+++.+.+.+ -.|. |+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHs-------f~vP~~~~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHS-------WTVPSLGV-----------------KVDAV---PGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-cccc-------ccccccCc-----------------ceecC---CCceEEEEEEeCCCEE
Confidence 3466789999999999874 3444 44433221 22433 5777788899999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+..-|.-+-.. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTK 217 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHH
Confidence 99999876544 56677778777654
No 109
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=38.03 E-value=63 Score=22.68 Aligned_cols=40 Identities=3% Similarity=-0.035 Sum_probs=29.7
Q ss_pred CCCccee-EEeCCCCEEEEEEEecCcccceeeecchhhhhc
Q 009127 465 DTVARST-TQVYPRSWTAIYMALDNVGMWNIRSENWARQYL 504 (543)
Q Consensus 465 ~p~~rDT-v~vp~~g~v~irf~adnpG~w~~HCHil~Hed~ 504 (543)
.|..+-+ |..+.|+...+.++-..-..+=+||..+.|.+.
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3444443 334567888888888888899999999999763
No 110
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.77 E-value=1.2e+02 Score=29.19 Aligned_cols=77 Identities=6% Similarity=0.048 Sum_probs=53.2
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+...+- . |.|+|-+-+. ..|.+ ||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-i-------Hsf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV-L-------HSWTVPALGV-----------------KMDAV---PGRLNQATFIISRPGL 191 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc-c-------ccccccccCc-----------------eeEec---CCceEEEEEEeCCcEE
Confidence 34668899999999998753 3 3455543321 23443 5677788889999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+..-|.-+-.. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 192 YYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEchhhcCcCcCCCeEEEEEECHH
Confidence 99999876544 45666777776554
No 111
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=37.23 E-value=1.4e+02 Score=25.79 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=38.4
Q ss_pred eEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc-------cccccCeEEEcCCCeEEEEEEeCC
Q 009127 204 TFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT-------LQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 204 ~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~-------~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
.+++.....|+|++-..+ ..+|.|+|..+ +..++..- .+....++.|..|++++|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 345555567899988433 46677888764 44554332 234456788899999999888764
No 112
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=35.64 E-value=2.3e+02 Score=24.12 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=36.1
Q ss_pred EEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc-cccccCeEEEcCCCeEEEEEEeCCCC
Q 009127 205 FTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT-LQNTYAALDIHLGQTYSVLVTMDQAP 271 (543)
Q Consensus 205 ~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~~~ 271 (543)
+++.....|+|.+...+ ...+.|+|.. |+..++..- .+.....+.|..|++|.|.|...+..
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~ 114 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAG 114 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCC
Confidence 44444456888884333 3567788763 333333221 12234468888888888888775433
No 113
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.15 E-value=90 Score=30.02 Aligned_cols=77 Identities=6% Similarity=0.082 Sum_probs=53.3
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+...+ -.| .|.|-+-+ ...|.+ ||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViH-------sf~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED-VLH-------SWAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecc-ccc-------cccccccC-----------------ceEEcc---CCcceeEEEEeCCcEE
Confidence 4566889999999999874 333 45553332 123444 5667778889999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+-.-|.-+-.. |..|-..++|.+++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHH
Confidence 99999875544 56677777777654
No 114
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=34.36 E-value=1.4e+02 Score=25.37 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=43.3
Q ss_pred EEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccc----ccccCeEEEcCCCeEEEEEEeC
Q 009127 193 LLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTL----QNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 193 ~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~----p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
.++|..+ .+.-.+..|+.+++++-=......-.+. -.|.+...+|..+- ......+....++++.+.++++
T Consensus 19 ~i~~~~g--~~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~ 93 (142)
T PF14524_consen 19 RILDSDG--EPTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIP 93 (142)
T ss_dssp EEEETTE--ES-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE
T ss_pred EEEeCCC--CEeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEc
Confidence 4445344 4555577889988887544432222222 23444555555441 1122345555589999999887
Q ss_pred C--CCcceEEEEee
Q 009127 269 Q--APQDYYIVVSS 280 (543)
Q Consensus 269 ~--~~g~y~i~~~~ 280 (543)
. .+|.|.|...-
T Consensus 94 ~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 94 KPLNPGEYSISVGL 107 (142)
T ss_dssp --B-SEEEEEEEEE
T ss_pred CccCCCeEEEEEEE
Confidence 5 58999998765
No 115
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=33.84 E-value=1.1e+02 Score=24.72 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=25.9
Q ss_pred EEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc--c--ccccCeEEEcCCCeEEE
Q 009127 212 TYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT--L--QNTYAALDIHLGQTYSV 263 (543)
Q Consensus 212 ~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~--~--p~~~~~v~l~pgeR~dv 263 (543)
.|++||-|.+.. .+.|-...+.|...||... + -+.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 478999999886 3455555555555555332 1 12234457888886654
No 116
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.97 E-value=1.6e+02 Score=28.26 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=53.9
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+...|- - |.|+|-+-+ ...|.+ ||..-.+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-i-------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDV-L-------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecch-h-------hcccccccC-----------------ceeEec---CCceEEEEEEEcccce
Confidence 44668899999999998753 2 355554332 234544 5777788899999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+.--|--+--. |.-|-..++|.+++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHH
Confidence 99999875544 55666777776554
No 117
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.91 E-value=53 Score=29.29 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=41.8
Q ss_pred ccCCCeEEEEEEEEEEEecCCCeeEEEEEECCcC-CCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC
Q 009127 23 YGDSPYRFFTWKITYGDIYPLGVKQQGILINGQF-PGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY 100 (543)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~-pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p 100 (543)
.+......|-++.++...... ...+.+-+.|.+ +|..-+. .|..++++++.. .....++..|. .+....+|..
T Consensus 28 ~a~~~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg~~ 101 (148)
T PRK13254 28 YALRQNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREGQG 101 (148)
T ss_pred HHHHhCCceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCCCE
Confidence 344444567776666543322 122333444444 4433343 788888888776 45667888887 4555666654
No 118
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=32.58 E-value=15 Score=37.82 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred CceeecCcccCCCCCCCCCCCC-CCCcCCCCCeEEEEEEeCCCcccceecC
Q 009127 80 PFLISWNGLQQRRNSWQDGVYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFP 129 (543)
Q Consensus 80 ~~~iH~HG~~~~~~~~~DG~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~ 129 (543)
...+-|-|+..+- .+++..- .=..|+||++.+-+|.+ +.|||...
T Consensus 77 g~~V~F~Gi~~~~--~~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs~ 122 (359)
T PF02102_consen 77 GKEVPFTGIRLRY--DTSGLTEDAFQTLAPGESVEVEFDI---AETHDLSS 122 (359)
T ss_dssp ---------------------------------------------------
T ss_pred CcccccccEEEEE--ecCCCCHHHceecCCCCeEEEEEcc---hheeecCC
Confidence 3446677775432 3444332 11569999999999976 67777654
No 119
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=32.04 E-value=1.9e+02 Score=24.71 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=33.6
Q ss_pred ceEEEecCCEEEEEEEECCCCC-----ceeec--CcccCCCC-CCCCCCC--CCCCcCCCCCeEEEEEEeC
Q 009127 59 PQIDAVTNDNLIISVYNYLREP-----FLISW--NGLQQRRN-SWQDGVY--GTTCPIPPGKNFTYVLQAK 119 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~-----~~iH~--HG~~~~~~-~~~DG~p--~tq~~i~PG~~~~y~f~~~ 119 (543)
..=.+++|..+.+.+.=..++. +.+|+ -|+..+.. +..|+=- +..|||.+|+.++|.+.++
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 3445677777777665332221 12222 24333211 1234311 2469999999999999774
No 120
>PRK13202 ureB urease subunit beta; Reviewed
Probab=31.65 E-value=1.4e+02 Score=24.65 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=39.9
Q ss_pred eEEEecC--CEEEEEEEECCCCCc--eeecCcccCCCCCCCC-----C----CC-CCCCcCCCCCeEEEEEEe
Q 009127 60 QIDAVTN--DNLIISVYNYLREPF--LISWNGLQQRRNSWQD-----G----VY-GTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 60 ~i~v~~G--d~v~i~~~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~p-~tq~~i~PG~~~~y~f~~ 118 (543)
.|.+++| +++.|+|+|.-+.+. .-|+|=..+...-..| | .| ||..-..||++.+.+...
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4899999 599999999988764 4577766553322222 1 22 244557888888887764
No 121
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=30.87 E-value=1.1e+02 Score=29.17 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=54.1
Q ss_pred EecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccce
Q 009127 414 MAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWN 493 (543)
Q Consensus 414 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 493 (543)
+-++.|+.+++.+.+.+ -.| +|+|=+-+ ..+|.+ ||-...+.|.++.||.|-
T Consensus 132 l~iP~g~~v~~~ltS~D-ViH-------sf~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~y~ 183 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSAD-TMT-------SFWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGTYR 183 (217)
T ss_pred EEEECCCEEEEEEECCc-hhh-------hhhchhhC-----------------ceeecC---CCceEEEEEEeCCCEEEE
Confidence 55789999999999774 233 55553332 245665 677888999999999999
Q ss_pred eeecchhh-hhcccEEEEEEecCC
Q 009127 494 IRSENWAR-QYLGQQFYLRVYSPA 516 (543)
Q Consensus 494 ~HCHil~H-ed~GMm~~~~V~~p~ 516 (543)
-.|=-+-= .+.-|...++|.+++
T Consensus 184 g~Cae~CG~~Hs~M~~~v~v~~~~ 207 (217)
T TIGR01432 184 GRNANFNGEGFADQTFDVNAVSEK 207 (217)
T ss_pred EEehhhcCccccCCeEEEEEeCHH
Confidence 99975432 255788888887765
No 122
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.70 E-value=46 Score=26.34 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.7
Q ss_pred eeEEEEEECCcCCCceEEEecCCEEEEE
Q 009127 45 VKQQGILINGQFPGPQIDAVTNDNLIIS 72 (543)
Q Consensus 45 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~ 72 (543)
.+..++.+||+.-++.-+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 3568899999999999999999999874
No 123
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.69 E-value=1.8e+02 Score=27.95 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=44.1
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
...+.+..|+.+||++-.... .|.|.+.+...+ +..-||..-.+.+.++ .+|.|+..|+..
T Consensus 139 dn~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~ 199 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAADV--IHSWTVPSLGVK----------------VDAVPGRLNQIGFTIT-RPGVFYGQCSEI 199 (228)
T ss_pred CceEEEecCCEEEEEEEeCCc--cccccccccCcc----------------eecCCCceEEEEEEeC-CCEEEEEEChhh
Confidence 356788899999998887544 466666554433 2344788888888888 799999988754
No 124
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=28.21 E-value=2.3e+02 Score=24.15 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=35.1
Q ss_pred CceEEEecCCEEEEEEEECCCCC---ceeecC----cccCC-CCCCCCCCCCCCCcCCCCCeEEEEEEeC
Q 009127 58 GPQIDAVTNDNLIISVYNYLREP---FLISWN----GLQQR-RNSWQDGVYGTTCPIPPGKNFTYVLQAK 119 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~---~~iH~H----G~~~~-~~~~~DG~p~tq~~i~PG~~~~y~f~~~ 119 (543)
+..=.+++|..+.+.+.=..++. .....| |+..+ ..+..||=-...|||.+|+.++|.+..+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 34556778888777765333222 223333 33222 1122444211369999999999999774
No 125
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.96 E-value=66 Score=28.53 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=22.5
Q ss_pred CCcCCCCCeEEEEEEe---CCCcccceecCC
Q 009127 103 TCPIPPGKNFTYVLQA---KDQIGSYFYFPS 130 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~---~~~~Gt~wYH~H 130 (543)
..||+||++++..+.. |...|+|-|++-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 4789999999999943 344799999886
No 126
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=27.74 E-value=2.6e+02 Score=23.80 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=7.5
Q ss_pred CCchhHHHHHHHHHHHHH
Q 009127 1 MRDSRVLCSLIALLLSLA 18 (543)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (543)
|++.-+ ..++++++.+
T Consensus 1 Mrk~~~--~~l~~~lLvG 16 (123)
T COG5633 1 MRKLCL--LSLALLLLVG 16 (123)
T ss_pred CceehH--HHHHHHHhhc
Confidence 566555 2444444443
No 127
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=27.50 E-value=4.7e+02 Score=23.70 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=41.0
Q ss_pred ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 203 p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
..+.+..|+.+||++--+.. .|.|.+.....++ ..-||..-.+.+.+. .+|.|...|+...
T Consensus 73 n~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK~----------------DavPGr~n~l~~~~~-~~G~y~gqCsElC 133 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDV--IHSWSVPSLGIKA----------------DAIPGRLHKINTFIL-REGVFYGQCSEMC 133 (162)
T ss_pred CCEEEeCCCEEEEEEEeCcc--ceeeeccccCcee----------------eccCCceEEEEEecC-CCeEEEEEcchhc
Confidence 45678888888877655443 4777666554433 333666667777777 6999999987643
No 128
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=27.49 E-value=2.2e+02 Score=27.58 Aligned_cols=77 Identities=9% Similarity=0.124 Sum_probs=54.4
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+... +--|.|.+- +-+ ..+|.+ ||-...+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~-DViHsf~iP-------~lg-----------------vK~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA-DVLHSFAVP-------SLG-----------------LKIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcC-Ccccceeec-------ccC-----------------ceeecC---CCcceeEEEEcCCCEE
Confidence 446689999999999877 345655543 222 234544 4666778889999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+.-.|.-+--. +.-|-..++|.+++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~ 228 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLD 228 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHH
Confidence 99999876644 56677778877664
No 129
>COG1470 Predicted membrane protein [Function unknown]
Probab=26.58 E-value=8.2e+02 Score=26.23 Aligned_cols=177 Identities=19% Similarity=0.310 Sum_probs=98.3
Q ss_pred EEEecCCE--EEEEEEECCC--CCceeecCcccCCC-CCCCCCCCC-CCCcCCCCCeEEEEEEeCCCcccceecCCchhh
Q 009127 61 IDAVTNDN--LIISVYNYLR--EPFLISWNGLQQRR-NSWQDGVYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFH 134 (543)
Q Consensus 61 i~v~~Gd~--v~i~~~N~l~--~~~~iH~HG~~~~~-~~~~DG~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q 134 (543)
+.+.++++ +.|++.|+-. ..+.+-.-|+.--. ....+|-.- +...+.||++.+....+.- ..+
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~p-----------s~n 346 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYP-----------SLN 346 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEec-----------CCC
Confidence 45556665 6677778754 45566655552110 111244443 5567899999888887731 112
Q ss_pred hhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCCCcceEEEecCC--E
Q 009127 135 KAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYTFTVEPGR--T 212 (543)
Q Consensus 135 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~p~~~v~~G~--~ 212 (543)
..-|.|-..|+--... ...++.++-+.---.. .-..-+-||. ..+++.+|+ .
T Consensus 347 a~pG~Ynv~I~A~s~s------~v~~e~~lki~~~g~~----------------~~~v~l~~g~----~~lt~taGee~~ 400 (513)
T COG1470 347 ATPGTYNVTITASSSS------GVTRELPLKIKNTGSY----------------NELVKLDNGP----YRLTITAGEEKT 400 (513)
T ss_pred CCCCceeEEEEEeccc------cceeeeeEEEEecccc----------------ceeEEccCCc----EEEEecCCccce
Confidence 2234444444333211 1234444444221100 0012223333 457788886 5
Q ss_pred EEEEEEEcCCc--ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCe--EEEEEEeCC--CCcceEEEEeec
Q 009127 213 YRFRISNVGLT--TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQT--YSVLVTMDQ--APQDYYIVVSSR 281 (543)
Q Consensus 213 ~rlRiiN~~~~--~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR--~dv~v~~~~--~~g~y~i~~~~~ 281 (543)
.+++|-|.|+. ....+.+++-+=|=+.+|+..+ + .|.||+| +++.++++. .+|+|.+.....
T Consensus 401 i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 401 IRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred EEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 69999999974 4567788887778888887643 3 3456655 555566654 468998876554
No 130
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.47 E-value=65 Score=28.56 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=19.8
Q ss_pred eCCCCEEEEEEEe-cCc---ccceeeecc
Q 009127 474 VYPRSWTAIYMAL-DNV---GMWNIRSEN 498 (543)
Q Consensus 474 vp~~g~v~irf~a-dnp---G~w~~HCHi 498 (543)
|+||..+.|.++. .|| |.|.|+|=.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 4689999999954 466 889998866
No 131
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=26.45 E-value=1.9e+02 Score=25.11 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=31.2
Q ss_pred EEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccc----ccccCeEEEcCCCeEEE
Q 009127 212 TYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTL----QNTYAALDIHLGQTYSV 263 (543)
Q Consensus 212 ~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~----p~~~~~v~l~pgeR~dv 263 (543)
.|++||.|.+.. ...|-+..+.+...||...+ .+.-..=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 478999998764 35666777777766665321 12234456788887654
No 132
>PRK10301 hypothetical protein; Provisional
Probab=26.17 E-value=3e+02 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=16.3
Q ss_pred CCEEEEEEEECC-CCCceeecCcccCCCCCCCCCCC
Q 009127 66 NDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGVY 100 (543)
Q Consensus 66 Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~p 100 (543)
+.++.+.+.-.| +-.+++.|+.+. .||.+
T Consensus 85 ~~~~~v~l~~~L~~G~YtV~Wrvvs------~DGH~ 114 (124)
T PRK10301 85 QKQLIVPLADSLKPGTYTVDWHVVS------VDGHK 114 (124)
T ss_pred CcEEEEECCCCCCCccEEEEEEEEe------cCCCc
Confidence 344555554333 345677887762 56665
No 133
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=24.43 E-value=3.8e+02 Score=25.73 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=41.9
Q ss_pred ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 203 p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
..+.+..|+.+||++--..- .|.|.+..-. -....-||..-.+.++++ .+|.|...|....
T Consensus 139 nel~lP~g~pV~~~ltS~DV--iHSF~VP~l~----------------~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSV--MNSFFIPQLG----------------SQIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECch--hhhhhhhhcC----------------CeeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 56778888888887765443 3555444222 223445888888889888 6999999987644
Q ss_pred C
Q 009127 283 T 283 (543)
Q Consensus 283 ~ 283 (543)
+
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 3
No 134
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.60 E-value=57 Score=32.00 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=15.5
Q ss_pred cceecCCch---------------hhhhccceeEEEEecCC
Q 009127 124 SYFYFPSFL---------------FHKAAGAFGGIRIWSRP 149 (543)
Q Consensus 124 t~wYH~H~~---------------~q~~~Gl~G~liV~~~~ 149 (543)
.=|||||.+ .|...--+-+++|+|..
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~R 174 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTR 174 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCcc
Confidence 359999943 13333456667776643
No 135
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.24 E-value=4.3e+02 Score=25.36 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=41.8
Q ss_pred ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 203 p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
..+.+..|+.+||++--... .|.|.+.....+ +..-||..-.+.+.++ .+|.|+..|...
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~ 199 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV--LHSWAVPSLGLK----------------TDAIPGRLNQTTLMST-RPGLYYGQCSEI 199 (227)
T ss_pred ceEEecCCCEEEEEEEECcc--cccccccccccc----------------eecCCCceEEEEEecC-CcEEEEEECccc
Confidence 46788888888888765443 466655554332 2344788888888887 799999988754
No 136
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.97 E-value=2.2e+02 Score=27.42 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=42.1
Q ss_pred ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 203 p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
..+.+..|+.+||++--... .|.|.+.+...+ +..-||.+-.+.++++ .+|.|+..|...
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~~~~k----------------~da~PG~~~~~~~~~~-~~G~~~g~C~e~ 199 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV--LHSWAVPALGVK----------------MDAVPGRLNQTAFIAS-RPGVFYGQCSEI 199 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc--ccceeccccCCc----------------cccCCCceEEEEEEeC-CceEEEEEChhh
Confidence 56788889888887755443 466655544322 2344899999999888 699999988754
No 137
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.71 E-value=2.5e+02 Score=27.14 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=43.7
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
...+.+..|+.+|+++-.+.. .|.|.+.+...+ +..-||..-.+.+.++ .+|.|+..|...
T Consensus 143 dn~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~k----------------~daiPG~~~~~~~~~~-~~G~y~g~Cse~ 203 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAADV--LHSFAVPSLSVK----------------IDAVPGRLNQTSFFIK-RPGVFYGQCSEI 203 (234)
T ss_pred ceEEEEecCcEEEEEEEeCch--hccccccccCce----------------eEccCCceEeEEEEeC-CCEEEEEEChhh
Confidence 356888999999998887644 466666554433 2344788888888887 789999988654
No 138
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=22.51 E-value=4.3e+02 Score=22.59 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=36.7
Q ss_pred EEEEEEEEcCCcceEEEEEeCC-eeEEEEEcCcccc------ccccCeEEEcCCCeEEEEEEeC
Q 009127 212 TYRFRISNVGLTTSINFRIQGH-SMKLVEVEGSHTL------QNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 212 ~~rlRiiN~~~~~~~~~~i~g~-~~~via~DG~~~~------p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
.++|.+-|.|.... .|.|. .+..+..||..+. ......+.|.||++..+.|...
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~ 81 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWS 81 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEe
Confidence 46899999888532 45554 3444567777442 1235679999999999888776
No 139
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=22.51 E-value=49 Score=24.11 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.1
Q ss_pred EEECCcCC-CceEEEecCCEEEE
Q 009127 50 ILINGQFP-GPQIDAVTNDNLII 71 (543)
Q Consensus 50 ~~~Ng~~p-gP~i~v~~Gd~v~i 71 (543)
+.+||+.- -|..+++.||.|.|
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 46788864 68999999999986
No 140
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.83 E-value=3.3e+02 Score=26.28 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=52.5
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+.+.+ -.|. |.|-+-+ ...|.+ ||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~D-ViHs-------f~vp~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VLHS-------FAVPSLS-----------------VKIDAV---PGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hhcc-------ccccccC-----------------ceeEcc---CCceEeEEEEeCCCEE
Confidence 4566889999999999874 3444 4443322 123443 5666778889999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+-.-|.-+--. |.-|-..++|.+++
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~~ 221 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSLD 221 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECHH
Confidence 99999875433 55677777777654
No 141
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=21.77 E-value=4.2e+02 Score=25.16 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=41.1
Q ss_pred ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 203 p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
..+.+..|+.+||++-.... .|.|.+..-. -....-||..-.+-++++ .+|.|...|....
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~vP~l~----------------~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWIPQLG----------------GQKYAMTGMTMNWYLQAD-QVGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhchhhC----------------ceeecCCCceEEEEEEeC-CCEEEEEEehhhc
Confidence 45777778777777755443 3444443222 223445898889999988 7999999997643
No 142
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=21.64 E-value=4.9e+02 Score=24.95 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=10.7
Q ss_pred EEEcCCCeEEEEEE
Q 009127 253 LDIHLGQTYSVLVT 266 (543)
Q Consensus 253 v~l~pgeR~dv~v~ 266 (543)
..|.|++...+.+.
T Consensus 187 ~~v~P~s~~~~~l~ 200 (230)
T PRK09918 187 PYILPGESLTVAIT 200 (230)
T ss_pred ceECCCceEEEEcc
Confidence 46888888888765
No 143
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=21.49 E-value=3e+02 Score=22.76 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEECCCCCc--eeecCcccCCCCCCCC---------CCCC-CCCcCCCCCeEEEEEEe
Q 009127 61 IDAVTN-DNLIISVYNYLREPF--LISWNGLQQRRNSWQD---------GVYG-TTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 61 i~v~~G-d~v~i~~~N~l~~~~--~iH~HG~~~~~~~~~D---------G~p~-tq~~i~PG~~~~y~f~~ 118 (543)
|++++| +++.|.|+|.-+.+. .-|+|=..+...-..| ..|- |..-..||++.+.+...
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred EEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
No 144
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=21.44 E-value=5.7e+02 Score=24.48 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCC-----CceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEE
Q 009127 42 PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLRE-----PFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVL 116 (543)
Q Consensus 42 ~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~-----~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f 116 (543)
++|..---+++.|.+-.-.|.|..|-.+++++.-+.+. ..+--||+. ..++-+|....+|
T Consensus 80 ~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssIe~ 144 (272)
T COG4633 80 PNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSIEF 144 (272)
T ss_pred cCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEEEe
Confidence 44433334555555544689999999999999888653 233344443 3356788889999
Q ss_pred EeCCCcccceecCCchhhhhccceeEEEEecCCC
Q 009127 117 QAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPR 150 (543)
Q Consensus 117 ~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 150 (543)
+- .+.|+|-+-|-.. -|.|.++|+.-..
T Consensus 145 T~-~s~ge~af~cgmn-----m~~G~~~vet~~~ 172 (272)
T COG4633 145 TP-ISKGEYAFLCGMN-----MFRGNIQVETLTG 172 (272)
T ss_pred cc-ccccchhhhcchh-----hccCeeEEEecCC
Confidence 87 5899998888532 2789999998654
No 145
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.81 E-value=3.1e+02 Score=22.69 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=39.0
Q ss_pred eEEEecC-CEEEEEEEECCCCCc--eeecCcccCCCCCCCC-----C----CC-CCCCcCCCCCeEEEEEEe
Q 009127 60 QIDAVTN-DNLIISVYNYLREPF--LISWNGLQQRRNSWQD-----G----VY-GTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 60 ~i~v~~G-d~v~i~~~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~p-~tq~~i~PG~~~~y~f~~ 118 (543)
.|.+++| +++.|+|+|.-+.+. .-|+|=..+...-..| | .| ||..-..||++.+.+...
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVP 83 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 3778888 889999999988765 4577766553322222 1 22 244557788888877764
No 146
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.80 E-value=3.4e+02 Score=26.04 Aligned_cols=77 Identities=5% Similarity=0.123 Sum_probs=52.7
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+...+ -.|.|.+- +-+ ...|.+ ||-...+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~iP-------~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSWAVP-------SLG-----------------VKMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-cccccccc-------ccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 4466889999999998773 44555443 222 234544 5677788899999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+..-|--+--. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999876544 44566667666554
No 147
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.73 E-value=3.5e+02 Score=25.98 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=33.8
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEE
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVT 266 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~ 266 (543)
.|.+++++|+...+|++..+.. -.+-....-+-++..+-++.....+.++-..|+-+.++
T Consensus 75 PPl~rl~pg~~q~vRii~~~~l-----p~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyR 134 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKSGS-----PLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQ 134 (230)
T ss_pred CCeEEECCCCceEEEEEECCCC-----CCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEe
Confidence 7899999999999999976531 12334444444444332222223455555555554443
No 148
>PRK13202 ureB urease subunit beta; Reviewed
Probab=20.53 E-value=4.1e+02 Score=22.04 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=38.8
Q ss_pred ceEEEecC--CEEEEEEEEcCCcceEEEEEeCCeeEE---EEEc-----CccccccccCeEEEcCCCeEEEEEEe
Q 009127 203 YTFTVEPG--RTYRFRISNVGLTTSINFRIQGHSMKL---VEVE-----GSHTLQNTYAALDIHLGQTYSVLVTM 267 (543)
Q Consensus 203 p~~~v~~G--~~~rlRiiN~~~~~~~~~~i~g~~~~v---ia~D-----G~~~~p~~~~~v~l~pgeR~dv~v~~ 267 (543)
..+++.+| ++.++++.|.|. +...+.-|-|-+.+ +.-| |.-+.=..-.++...|||.-+|.+..
T Consensus 11 ~~I~ln~grr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 11 GDIEMNAAALSRLQMRIINAGD-RPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCEEeCCCCCceEEEEEEeCCC-CceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 34778888 478999999997 46655555554433 1112 22222122356788888888887654
Done!