Query 009127
Match_columns 543
No_of_seqs 222 out of 1706
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 19:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aoz_A Ascorbate oxidase; oxid 100.0 2E-100 7E-105 830.0 54.8 492 26-536 1-542 (552)
2 3sqr_A Laccase; multicopper ox 100.0 1.5E-96 5E-101 793.6 50.2 469 26-536 65-565 (580)
3 1zpu_A Iron transport multicop 100.0 1.1E-95 4E-100 787.3 50.9 473 27-535 1-503 (534)
4 1v10_A Laccase; multicopper bl 100.0 1.2E-95 4E-100 786.2 46.3 475 25-539 20-515 (521)
5 3t6v_A Laccase; beta barrel, o 100.0 5.4E-95 1.9E-99 773.0 45.8 468 29-537 5-493 (495)
6 3pxl_A Laccase; 4-copper prote 100.0 3.2E-94 1.1E-98 766.9 48.9 468 29-539 4-495 (499)
7 1hfu_A Laccase 1; oxidoreducta 100.0 4.7E-93 1.6E-97 763.6 45.4 464 30-538 6-493 (503)
8 2q9o_A Laccase-1; multicopper 100.0 1.6E-92 5.3E-97 767.6 49.3 479 24-537 29-545 (559)
9 2xu9_A Laccase; oxidoreductase 100.0 7.9E-87 2.7E-91 704.6 39.0 400 24-513 12-439 (439)
10 2uxt_A Protein SUFI, SUFI; oxi 100.0 4.4E-86 1.5E-90 699.7 30.1 403 27-516 17-443 (451)
11 3abg_A Bilirubin oxidase; clea 100.0 1.1E-83 3.6E-88 692.8 37.9 417 27-516 35-477 (534)
12 3zx1_A Oxidoreductase, putativ 100.0 8.3E-83 2.8E-87 674.7 40.2 403 24-513 46-480 (481)
13 2wsd_A Spore coat protein A; o 100.0 5.1E-82 1.7E-86 679.5 40.4 427 27-515 24-511 (513)
14 3gyr_A PHS, phenoxazinone synt 100.0 6.3E-81 2.2E-85 689.3 40.3 441 26-517 30-594 (612)
15 3aw5_A Multicopper oxidase; be 100.0 1.2E-81 4.3E-86 664.6 29.5 381 50-513 28-448 (448)
16 3od3_A Blue copper oxidase CUE 100.0 2.3E-80 7.7E-85 655.7 35.5 412 26-512 15-488 (488)
17 2g23_A PHS, phenoxazinone synt 100.0 1.2E-78 4E-83 658.2 41.7 439 26-516 30-593 (612)
18 2j5w_A Ceruloplasmin, ferroxid 100.0 8E-55 2.7E-59 502.6 38.0 390 22-449 15-488 (1065)
19 3g5w_A Multicopper oxidase typ 100.0 3.7E-54 1.3E-58 434.9 30.1 266 27-299 1-278 (318)
20 2r7e_A Coagulation factor VIII 100.0 2.4E-55 8.2E-60 487.8 15.5 238 32-281 50-314 (742)
21 2zwn_A Two-domain type laccase 100.0 8E-53 2.7E-57 429.7 30.0 266 27-299 2-279 (339)
22 2dv6_A Nitrite reductase; elec 100.0 2E-50 6.7E-55 428.8 26.2 396 27-517 27-436 (447)
23 1kbv_A ANIA, major outer membr 100.0 1.1E-49 3.8E-54 404.5 28.6 259 24-299 34-309 (327)
24 3gdc_A Multicopper oxidase; be 100.0 3.5E-48 1.2E-52 386.6 28.5 234 26-281 32-273 (288)
25 3cg8_A Laccase; oxidoreductase 100.0 1.1E-47 3.8E-52 391.3 24.3 241 26-516 46-308 (343)
26 2j5w_A Ceruloplasmin, ferroxid 100.0 7.3E-48 2.5E-52 444.6 19.4 385 45-516 616-1060(1065)
27 2zoo_A Probable nitrite reduct 100.0 3E-46 1E-50 395.8 28.2 261 23-300 23-300 (442)
28 3kw8_A Laccase, putative coppe 100.0 3.5E-45 1.2E-49 362.6 25.1 239 24-298 3-266 (276)
29 1mzy_A Copper-containing nitri 100.0 1.3E-44 4.6E-49 368.8 28.8 266 23-299 27-320 (333)
30 3tas_A Small laccase, multi-co 100.0 6.7E-45 2.3E-49 366.9 23.5 242 22-299 7-273 (313)
31 3t9w_A Small laccase, multi-co 100.0 6.9E-45 2.4E-49 364.0 22.9 242 22-299 23-289 (299)
32 1oe1_A Dissimilatory copper-co 100.0 1.1E-44 3.8E-49 370.0 24.5 265 24-300 28-321 (336)
33 2bw4_A Copper-containing nitri 100.0 7.2E-45 2.5E-49 372.0 22.0 266 23-299 33-326 (340)
34 1sdd_B Coagulation factor V; c 100.0 9.4E-41 3.2E-45 369.1 24.8 262 26-296 4-326 (647)
35 2dv6_A Nitrite reductase; elec 100.0 1.1E-39 3.9E-44 346.0 31.1 254 27-299 162-435 (447)
36 1sdd_A Coagulation factor V; c 100.0 8.3E-42 2.8E-46 343.4 8.9 211 48-281 50-285 (306)
37 2r7e_B Coagulation factor VIII 100.0 5.9E-41 2E-45 372.9 10.1 248 25-281 130-441 (770)
38 2r7e_A Coagulation factor VIII 100.0 3.1E-37 1E-41 342.7 5.4 218 55-282 448-697 (742)
39 3gdc_A Multicopper oxidase; be 100.0 1.9E-30 6.5E-35 258.5 15.6 228 190-514 54-288 (288)
40 3g5w_A Multicopper oxidase typ 100.0 5.3E-29 1.8E-33 251.1 14.6 246 191-515 23-277 (318)
41 2zwn_A Two-domain type laccase 100.0 1.2E-28 3.9E-33 251.2 16.4 245 190-515 23-278 (339)
42 3kw8_A Laccase, putative coppe 100.0 6E-28 2.1E-32 238.9 15.8 222 193-517 27-268 (276)
43 3t9w_A Small laccase, multi-co 99.9 1.3E-27 4.6E-32 238.7 15.0 220 195-517 51-290 (299)
44 3tas_A Small laccase, multi-co 99.9 1.3E-26 4.4E-31 233.4 18.4 215 202-518 41-275 (313)
45 1sdd_A Coagulation factor V; c 99.9 3.4E-25 1.1E-29 222.5 2.4 233 192-515 51-301 (306)
46 1sdd_B Coagulation factor V; c 99.9 5.2E-22 1.8E-26 219.3 17.9 244 202-517 68-330 (647)
47 1kbv_A ANIA, major outer membr 99.9 7E-22 2.4E-26 200.1 16.4 246 191-516 59-309 (327)
48 2bw4_A Copper-containing nitri 99.9 3.7E-21 1.3E-25 196.2 19.3 259 190-516 59-326 (340)
49 2r7e_B Coagulation factor VIII 99.9 7.4E-23 2.5E-27 227.7 3.5 245 202-517 198-459 (770)
50 1mzy_A Copper-containing nitri 99.8 4.9E-20 1.7E-24 187.3 19.5 261 190-516 52-320 (333)
51 2zoo_A Probable nitrite reduct 99.8 2.3E-19 7.7E-24 189.6 16.3 247 190-516 48-299 (442)
52 1oe1_A Dissimilatory copper-co 99.8 3.5E-18 1.2E-22 173.9 19.3 260 190-516 53-320 (336)
53 2uxt_A Protein SUFI, SUFI; oxi 99.7 3.6E-16 1.2E-20 164.9 22.9 234 28-281 152-426 (451)
54 2xu9_A Laccase; oxidoreductase 99.7 2.7E-16 9.1E-21 165.6 20.4 234 28-281 146-425 (439)
55 1v10_A Laccase; multicopper bl 99.6 5E-15 1.7E-19 159.0 21.0 228 47-282 191-477 (521)
56 1hfu_A Laccase 1; oxidoreducta 99.6 8E-15 2.7E-19 156.8 22.1 249 30-282 143-456 (503)
57 3cvb_A Plastocyanin; cupredoxi 99.6 8.2E-17 2.8E-21 135.0 3.3 89 55-147 15-105 (105)
58 3zx1_A Oxidoreductase, putativ 99.6 4.6E-14 1.6E-18 149.1 19.6 239 29-281 181-466 (481)
59 3t6v_A Laccase; beta barrel, o 99.6 2.2E-13 7.4E-18 144.9 21.5 232 46-281 167-456 (495)
60 1zpu_A Iron transport multicop 99.5 4.5E-13 1.6E-17 144.0 22.5 219 47-282 167-467 (534)
61 1aoz_A Ascorbate oxidase; oxid 99.5 4.5E-13 1.6E-17 144.9 20.5 204 60-282 205-511 (552)
62 3pxl_A Laccase; 4-copper prote 99.5 2.2E-13 7.5E-18 144.8 16.7 231 46-281 165-456 (499)
63 3od3_A Blue copper oxidase CUE 99.5 6.3E-13 2.1E-17 140.4 19.7 248 29-281 151-475 (488)
64 2q9o_A Laccase-1; multicopper 99.5 3.8E-12 1.3E-16 137.7 23.6 234 47-282 195-507 (559)
65 2cal_A Rusticyanin; iron respi 99.5 1.9E-13 6.4E-18 122.2 10.9 99 43-146 46-154 (154)
66 3aw5_A Multicopper oxidase; be 99.5 1E-12 3.6E-17 138.2 18.4 226 29-281 138-434 (448)
67 2g23_A PHS, phenoxazinone synt 99.5 4.4E-12 1.5E-16 137.4 22.2 232 47-282 254-577 (612)
68 1iby_A Nitrosocyanin; RED copp 99.4 4E-13 1.4E-17 113.7 10.7 105 29-147 2-112 (112)
69 3cg8_A Laccase; oxidoreductase 99.4 9.9E-13 3.4E-17 133.5 11.5 100 50-151 198-310 (343)
70 2wsd_A Spore coat protein A; o 99.4 5.4E-12 1.8E-16 135.2 17.5 217 47-282 230-496 (513)
71 3abg_A Bilirubin oxidase; clea 99.4 5E-12 1.7E-16 135.7 16.5 241 47-297 201-475 (534)
72 1fwx_A Nitrous oxide reductase 99.3 2.3E-12 7.8E-17 137.7 10.6 95 43-149 497-594 (595)
73 3sqr_A Laccase; multicopper ox 99.3 2.1E-10 7E-15 123.6 22.6 228 47-282 225-530 (580)
74 2ov0_A Amicyanin; beta-sandwic 99.2 4.8E-11 1.6E-15 99.6 9.9 78 53-146 27-105 (105)
75 2aan_A Auracyanin A; cupredoxi 99.2 1.6E-11 5.3E-16 108.1 6.6 94 413-513 36-139 (139)
76 3gyr_A PHS, phenoxazinone synt 99.2 6.7E-10 2.3E-14 121.9 19.2 91 191-282 459-577 (612)
77 3cvb_A Plastocyanin; cupredoxi 99.2 3.7E-11 1.3E-15 100.2 6.3 84 413-513 20-104 (105)
78 2gim_A Plastocyanin; beta shee 99.1 1.2E-10 4.2E-15 97.2 8.6 83 58-147 19-106 (106)
79 2aan_A Auracyanin A; cupredoxi 99.0 1.1E-09 3.7E-14 96.2 9.7 90 55-146 31-139 (139)
80 4hci_A Cupredoxin 1; structura 98.9 4.2E-09 1.4E-13 86.9 8.3 79 53-146 22-100 (100)
81 2gim_A Plastocyanin; beta shee 98.9 3.7E-09 1.3E-13 88.1 7.7 84 413-513 21-105 (106)
82 1qhq_A Protein (auracyanin); e 98.9 1.4E-08 4.9E-13 89.1 11.7 92 55-147 29-140 (140)
83 3c75_A Amicyanin; copper prote 98.8 7.1E-09 2.4E-13 90.0 8.3 78 53-146 54-132 (132)
84 2plt_A Plastocyanin; electron 98.8 4.3E-09 1.5E-13 86.4 5.6 80 58-146 17-98 (98)
85 1pcs_A Plastocyanin; electron 98.7 1.6E-08 5.6E-13 82.9 7.2 81 58-146 18-98 (98)
86 1bxv_A Plastocyanin; copper pr 98.7 1.8E-08 6.3E-13 81.3 7.3 76 56-146 16-91 (91)
87 1qhq_A Protein (auracyanin); e 98.7 1.9E-08 6.4E-13 88.4 7.0 96 413-513 34-139 (140)
88 1pcs_A Plastocyanin; electron 98.7 6.9E-08 2.4E-12 79.1 8.9 78 413-513 20-98 (98)
89 1b3i_A PETE protein, protein ( 98.7 5.5E-08 1.9E-12 79.5 8.0 76 59-146 19-97 (97)
90 3erx_A Pseudoazurin; copper pr 98.7 1.1E-07 3.9E-12 80.9 10.0 75 59-148 21-95 (123)
91 2plt_A Plastocyanin; electron 98.6 6.6E-08 2.2E-12 79.2 8.1 80 413-513 19-98 (98)
92 1kdj_A Plastocyanin; electron 98.6 6.8E-08 2.3E-12 79.7 7.7 79 58-146 16-102 (102)
93 3tu6_A Pseudoazurin (blue copp 98.6 5E-08 1.7E-12 83.6 6.8 77 58-149 22-98 (127)
94 1bxv_A Plastocyanin; copper pr 98.6 1E-07 3.6E-12 76.8 8.3 72 413-513 20-91 (91)
95 3ef4_A Pseudoazurin, blue copp 98.6 1.2E-07 4E-12 80.8 7.4 76 58-148 21-96 (124)
96 1plc_A Plastocyanin; electron 98.6 1.9E-07 6.5E-12 76.6 8.3 77 58-146 16-99 (99)
97 1byp_A Protein (plastocyanin); 98.5 2.7E-07 9.2E-12 75.7 9.0 77 58-146 16-99 (99)
98 1b3i_A PETE protein, protein ( 98.5 1.5E-07 5.3E-12 76.8 5.8 78 413-513 20-97 (97)
99 1iby_A Nitrosocyanin; RED copp 98.4 4.5E-07 1.5E-11 76.2 8.1 74 413-514 39-112 (112)
100 1byp_A Protein (plastocyanin); 98.4 7.9E-07 2.7E-11 72.8 8.0 82 413-513 18-99 (99)
101 4hci_A Cupredoxin 1; structura 98.4 9.1E-07 3.1E-11 72.6 8.1 72 413-513 29-100 (100)
102 1paz_A Pseudoazurin precursor; 98.4 8.9E-07 3E-11 75.5 8.1 76 58-148 20-95 (123)
103 1cuo_A Protein (azurin ISO-2); 98.4 9.8E-07 3.3E-11 75.8 8.4 92 55-147 14-129 (129)
104 1iuz_A Plastocyanin; electron 98.4 5.2E-07 1.8E-11 73.8 6.1 79 56-146 15-98 (98)
105 1pmy_A Pseudoazurin; electron 98.3 1E-06 3.4E-11 75.2 7.2 76 58-148 20-95 (123)
106 1kdj_A Plastocyanin; electron 98.3 1E-06 3.5E-11 72.6 6.5 85 412-513 17-102 (102)
107 3ay2_A Lipid modified azurin p 98.2 2.8E-06 9.6E-11 76.0 8.8 92 55-147 54-167 (167)
108 1id2_A Amicyanin; beta barrel, 98.2 7.5E-06 2.6E-10 67.9 9.9 78 53-146 28-106 (106)
109 2ccw_A Azurin II, AZN-2; elect 98.1 6.7E-06 2.3E-10 70.5 7.6 92 55-147 14-129 (129)
110 3sbq_A Nitrous-oxide reductase 98.1 1.2E-05 4.1E-10 84.3 10.7 89 47-148 546-638 (638)
111 1plc_A Plastocyanin; electron 98.1 4.1E-06 1.4E-10 68.5 5.8 83 412-513 17-99 (99)
112 1nwp_A Azurin; electron transp 98.1 2E-05 6.9E-10 67.4 9.8 91 55-146 14-128 (128)
113 2iaa_C Azurin; quinoprotein, t 98.0 1.2E-05 4E-10 68.9 7.7 92 55-147 13-128 (128)
114 2ux6_A Pseudoazurin; type-1 co 98.0 9.3E-06 3.2E-10 69.1 6.9 74 58-148 20-93 (122)
115 2ov0_A Amicyanin; beta-sandwic 97.9 1.8E-05 6E-10 65.5 7.1 72 413-513 34-105 (105)
116 2cal_A Rusticyanin; iron respi 97.9 1.9E-05 6.5E-10 70.0 7.5 84 412-513 61-154 (154)
117 1fwx_A Nitrous oxide reductase 97.8 4.1E-05 1.4E-09 81.9 9.4 76 412-516 513-594 (595)
118 3fsa_A Azurin; copper, cupredo 97.5 0.00059 2E-08 57.5 9.6 88 55-146 14-125 (125)
119 3ef4_A Pseudoazurin, blue copp 97.3 0.00039 1.3E-08 58.9 6.4 75 413-516 23-97 (124)
120 1iuz_A Plastocyanin; electron 97.3 0.0011 3.6E-08 53.8 8.5 81 412-513 18-98 (98)
121 1id2_A Amicyanin; beta barrel, 97.2 0.0008 2.7E-08 55.5 7.1 72 413-513 35-106 (106)
122 3tu6_A Pseudoazurin (blue copp 97.1 0.00054 1.8E-08 58.4 5.4 75 413-516 24-98 (127)
123 3c75_A Amicyanin; copper prote 97.1 0.0012 3.9E-08 56.8 7.1 72 413-513 61-132 (132)
124 3erx_A Pseudoazurin; copper pr 97.1 0.0012 4.1E-08 55.9 7.0 73 413-514 22-94 (123)
125 2cua_A Protein (CUA); CUA cent 97.0 0.0036 1.2E-07 53.9 9.8 73 59-147 60-135 (135)
126 3s8f_B Cytochrome C oxidase su 96.8 0.006 2.1E-07 54.3 10.1 86 48-147 82-168 (168)
127 1paz_A Pseudoazurin precursor; 96.5 0.0086 2.9E-07 50.6 8.1 73 413-514 22-94 (123)
128 1pmy_A Pseudoazurin; electron 96.1 0.0084 2.9E-07 50.7 5.8 36 475-514 59-94 (123)
129 3sbq_A Nitrous-oxide reductase 96.0 0.017 6E-07 60.7 8.9 75 412-513 558-636 (638)
130 3ay2_A Lipid modified azurin p 95.6 0.031 1E-06 49.7 7.6 87 413-513 59-166 (167)
131 2cua_A Protein (CUA); CUA cent 95.4 0.047 1.6E-06 46.8 7.9 70 414-513 62-134 (135)
132 2ux6_A Pseudoazurin; type-1 co 95.1 0.036 1.2E-06 46.6 6.2 71 413-514 22-92 (122)
133 1cuo_A Protein (azurin ISO-2); 94.9 0.082 2.8E-06 44.9 8.0 87 413-513 19-128 (129)
134 2iaa_C Azurin; quinoprotein, t 94.2 0.12 4.2E-06 43.7 7.4 91 413-513 18-127 (128)
135 3s8f_B Cytochrome C oxidase su 93.5 0.24 8.4E-06 43.9 8.2 73 414-514 95-168 (168)
136 2ccw_A Azurin II, AZN-2; elect 93.3 0.25 8.4E-06 41.9 7.7 91 413-513 19-128 (129)
137 1nwp_A Azurin; electron transp 92.9 0.45 1.5E-05 40.2 8.6 92 413-512 19-127 (128)
138 3fsa_A Azurin; copper, cupredo 89.6 1.4 4.7E-05 36.9 8.1 96 412-513 18-125 (125)
139 3isy_A Bsupi, intracellular pr 82.5 8.4 0.00029 31.8 9.2 71 209-280 16-101 (120)
140 1cyx_A CYOA; electron transpor 71.3 7.9 0.00027 35.1 6.5 74 59-146 41-115 (205)
141 3isy_A Bsupi, intracellular pr 70.6 42 0.0014 27.5 10.2 75 45-130 20-100 (120)
142 1cyx_A CYOA; electron transpor 69.1 23 0.00077 32.1 9.0 63 202-283 40-102 (205)
143 2r39_A FIXG-related protein; s 63.8 17 0.00058 29.7 6.7 46 212-267 34-81 (118)
144 2gsm_B Cytochrome C oxidase su 57.1 26 0.0009 33.1 7.5 75 59-148 171-247 (262)
145 3hb3_B Cytochrome C oxidase su 55.5 16 0.00055 35.2 5.7 76 413-516 190-266 (298)
146 2gsm_B Cytochrome C oxidase su 52.9 53 0.0018 30.9 8.9 63 202-283 170-232 (262)
147 3hb3_B Cytochrome C oxidase su 52.1 37 0.0013 32.7 7.6 76 59-148 189-265 (298)
148 1xwv_A DER F II; beta sheets, 49.6 23 0.00078 29.5 5.2 62 58-119 24-93 (129)
149 2f1e_A Protein APAG; APAG prot 48.7 13 0.00045 31.0 3.4 49 70-118 34-88 (127)
150 1yew_A Particulate methane mon 47.1 49 0.0017 32.5 7.5 18 103-120 319-336 (382)
151 1nep_A EPV20, BNPC2, epididyma 45.8 23 0.00078 29.5 4.6 62 58-119 25-95 (130)
152 1xvs_A Protein APAG; MCSG APC2 45.4 13 0.00045 30.9 2.9 49 70-118 33-87 (126)
153 1xq4_A Protein APAG; all beta 43.9 18 0.0006 30.7 3.5 49 70-118 38-92 (139)
154 1tza_A APAG protein, SOR45; st 39.4 15 0.00053 30.8 2.4 49 70-118 33-87 (134)
155 2h7w_A Chagasin; beta-strands, 38.1 1.2E+02 0.0042 25.1 7.8 64 58-124 32-103 (131)
156 4ac7_B Urease subunit beta; hy 37.0 64 0.0022 26.4 5.6 59 60-118 18-89 (126)
157 4ubp_B Protein (urease (chain 37.0 64 0.0022 26.4 5.6 59 60-118 18-89 (126)
158 1v54_B Cytochrome C oxidase po 36.1 77 0.0026 29.1 6.9 74 59-147 140-215 (227)
159 1x9u_A Umecyanin; cupredoxin, 35.5 32 0.0011 28.0 3.7 35 114-149 72-107 (116)
160 3idu_A Uncharacterized protein 33.7 2E+02 0.0068 23.6 9.4 66 206-280 28-96 (127)
161 1v54_B Cytochrome C oxidase po 33.4 45 0.0015 30.7 4.8 77 412-516 140-217 (227)
162 2xzz_A Protein-glutamine gamma 33.3 43 0.0015 26.6 4.0 53 68-125 23-79 (102)
163 2c34_A ICP, inhibitor of cyste 32.7 76 0.0026 25.7 5.6 66 58-124 14-88 (116)
164 2r5o_A Putative ATP binding co 32.2 1.3E+02 0.0044 26.4 7.6 84 192-280 53-145 (188)
165 2qjv_A Uncharacterized IOLB-li 31.2 2E+02 0.0069 27.1 9.0 72 204-280 33-111 (270)
166 3rfr_A PMOB; membrane, oxidore 29.3 1.7E+02 0.0057 29.1 8.1 69 45-120 284-368 (419)
167 2x3c_A Toxic extracellular end 28.1 2.8E+02 0.0096 27.0 9.9 67 212-280 39-127 (343)
168 1fft_B Ubiquinol oxidase; elec 26.2 76 0.0026 30.7 5.2 61 203-282 151-211 (315)
169 1fft_B Ubiquinol oxidase; elec 25.2 49 0.0017 32.1 3.6 74 414-515 153-228 (315)
170 1ws8_A Mavicyanin; oxidized fo 23.3 79 0.0027 25.3 4.0 37 113-150 71-107 (109)
171 1x9u_A Umecyanin; cupredoxin, 21.9 67 0.0023 26.1 3.3 34 483-516 73-107 (116)
172 2aqm_A Superoxide dismutase [C 21.5 45 0.0015 28.7 2.3 70 417-488 28-113 (154)
173 2hj1_A Hypothetical protein; s 21.4 29 0.00099 27.4 1.0 24 48-71 59-82 (97)
174 2wtp_A ORF131 protein, CZCE; m 21.0 32 0.0011 28.6 1.2 22 202-223 70-91 (131)
175 2wtp_A ORF131 protein, CZCE; m 20.1 36 0.0012 28.3 1.3 17 60-76 72-88 (131)
No 1
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=100.00 E-value=2.1e-100 Score=830.03 Aligned_cols=492 Identities=29% Similarity=0.522 Sum_probs=392.1
Q ss_pred CCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-CC
Q 009127 26 SPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-TT 103 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-tq 103 (543)
+.+++|+|+|++..+.+||.++.+|+|||++|||+|||++||+|+|+|+|+|+ ++++|||||+++.+++++||+++ ||
T Consensus 1 ~~~~~y~~~v~~~~~~~dg~~~~~~~~Ng~~PGP~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq 80 (552)
T 1aoz_A 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQ 80 (552)
T ss_dssp CCEEEEEEEEEEEEECTTSSCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTB
T ss_pred CeEEEEEEEEEEEEEcCCCceEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCccccc
Confidence 36899999999999999999999999999999999999999999999999998 99999999999999999999999 99
Q ss_pred CcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHhcc
Q 009127 104 CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLLDS 183 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 183 (543)
|+|+||++|+|+|++ +++||||||||.+.|+.+||+|+|||++++....++ .+|+|++|+|+||+++...++...+..
T Consensus 81 ~~I~PG~s~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 158 (552)
T 1aoz_A 81 CAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSS 158 (552)
T ss_dssp CCBCTTCEEEEEEEC-CSCEEEEEEECSTTTGGGTCEEEEEEECCTTCCCSS-CCSEEEEEEEEEECSSCHHHHHHHTTS
T ss_pred CCcCCCCeEEEEEEC-CCCEEEEEEECchhHHhccCeeeEEEeCCcccCCCC-CCCccceEEeecccCCCHHHHHhhhhc
Confidence 999999999999999 689999999999999999999999999986544555 457899999999999877655433332
Q ss_pred C--CCCCCCCeEEEcCCCCC------------------------cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEE
Q 009127 184 G--HNLPFPDGLLINGRGWN------------------------GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKL 237 (543)
Q Consensus 184 g--~~~~~~~~~liNG~~~~------------------------~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~v 237 (543)
. .....++.++|||+... .+.++|++|++|||||||+|..+.+.|+|+||+|+|
T Consensus 159 ~~~~~~~~~~~~liNG~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v 238 (552)
T 1aoz_A 159 KPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLV 238 (552)
T ss_dssp SSCCCCCSCSEEEETTBCCSSSBTTGGGCTTSCBCCCCSCSTTSCCCEEECTTCEEEEEEEECCSSCEEEEEETTCCEEE
T ss_pred ccccCCCCCCeEEECCccccCcccCcccccccccccccCCCCCCceEEEEcCCCEEEEEEEcccccceEEEEEcCcEEEE
Confidence 1 11235789999999831 017999999999999999999999999999999999
Q ss_pred EEEcCccccccccCeEEEcCCCeEEEEEEe-CCCCcceEEEEeeccC-CCccceEEEEEecCCCCC--CCCCCCCCCC-C
Q 009127 238 VEVEGSHTLQNTYAALDIHLGQTYSVLVTM-DQAPQDYYIVVSSRFT-PRVLTTTAILHYSNSRRG--VSGPIPGGPT-T 312 (543)
Q Consensus 238 ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~-~~~~g~y~i~~~~~~~-~~~~~~~~il~y~~~~~~--~~~~~p~~p~-~ 312 (543)
|++||.+++|+.++++.|+|||||||+|++ ++.+|+|||++....+ .......|+|+|.++... +..+.|..|. .
T Consensus 239 i~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~p~~~~p~~p~~~ 318 (552)
T 1aoz_A 239 VEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWD 318 (552)
T ss_dssp EEETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEESSCCCSCCEEEEEEETTSCTTSCCSSCCCCCCCTT
T ss_pred EEECCcccCceEEeEEEEcCCcEEEEEEEcCCCCCCCEEEEEEcccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCccc
Confidence 999999999999999999999999999999 4568999999987543 234568899999876531 1111222221 1
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcc
Q 009127 313 EIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGV 392 (543)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~ 392 (543)
+...... ..+. .+....+.+.| ...++++.+.......++...|+|||++|..+..|+|.+.+.++++.
T Consensus 319 ~~~~~~~--~~l~-~l~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~w~iNg~s~~~p~~P~L~~~~~~~~g~ 387 (552)
T 1aoz_A 319 DFDRSKN--FTYR-ITAAMGSPKPP--------VKFNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHA 387 (552)
T ss_dssp CHHHHHH--HHTT-CCBCTTCCCCC--------SSCSEEEEEEEEEEEETTEEEEEETTEEECCCSSCHHHHHHTTCTTS
T ss_pred ccccccc--cccc-ccccCCCCCCC--------CCCcEEEEEEEeeccCCCeEEEEECCCccCCCCCCHHHHHhhcCccc
Confidence 1000000 0000 01100011111 24567776654322234567899999999988999998776666665
Q ss_pred cccCCCCCC-----------CCCCCCccceeEEecCCCcEEEEEEEeCCC------CCCCeeecCCCeEEEeecCCCCCC
Q 009127 393 FTLGSMPTS-----------PNWGNAYLQTSVMAANFREFVEIVFQNWED------TVQSYHIDGYSFFVVGMDGGQWTP 455 (543)
Q Consensus 393 ~~~~~~~~~-----------p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~------~~HP~HlHG~~F~Vl~~~~g~~~~ 455 (543)
|..+ .+.. +.....+.++.++.++.|++|+|+|+|.+. +.||||||||+||||+++.|.|++
T Consensus 388 ~~~~-~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~v~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~ 466 (552)
T 1aoz_A 388 FDQN-PPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSA 466 (552)
T ss_dssp SCCS-CCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCEEEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCG
T ss_pred cccC-CCccccccccccccccccccccccceEEEecCCCEEEEEEeCCcccccccCCCCCEEEcCCceEEEecccCccCc
Confidence 5432 1110 111233456778899999999999999874 469999999999999999888876
Q ss_pred CCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCcchhcccc
Q 009127 456 ASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKNALLCGRA 535 (543)
Q Consensus 456 ~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~~~~c~~~ 535 (543)
.....+|+.+|.|||||.|++++|++|||++||||.|+|||||++|++.|||+.|.|... .+.++|+++++||.+
T Consensus 467 ~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~aDNPG~W~~HCHi~~H~~~GM~~~~~~~~~-----~~~~~P~~~~~C~~~ 541 (552)
T 1aoz_A 467 EEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVE-----KVGRIPTKALACGGT 541 (552)
T ss_dssp GGGGGSCCSSCCEESEEEECTTEEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEECGG-----GCCCCCHHHHSSHHH
T ss_pred ccccccccCCCCccCeEEeCCCceEEEEEEcCCCeEEEEEeeehhHhhCCCeEEEEeCch-----hhccCCcchhhhhcc
Confidence 445578899999999999999999999999999999999999999999999999987543 245689999999987
Q ss_pred C
Q 009127 536 R 536 (543)
Q Consensus 536 ~ 536 (543)
+
T Consensus 542 ~ 542 (552)
T 1aoz_A 542 A 542 (552)
T ss_dssp H
T ss_pred C
Confidence 6
No 2
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=100.00 E-value=1.5e-96 Score=793.56 Aligned_cols=469 Identities=24% Similarity=0.349 Sum_probs=372.5
Q ss_pred CCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-CC
Q 009127 26 SPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-TT 103 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-tq 103 (543)
+.+++|+|+|+++.+.+||+++.+|+|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++++||+++ ||
T Consensus 65 ~~~~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~tsIHwHGl~~~~t~~~DGvp~vTq 144 (580)
T 3sqr_A 65 GVTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQ 144 (580)
T ss_dssp CCEEEEEEEEEEEEECSSSBCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEETTCCCTTCGGGSCCBTTTB
T ss_pred ceEEEEEEEEEEEEecCCCeEEEEEEECCccCCceEEEeCCCEEEEEEEECCCCCcceEEecccccCCCccccCCCcccc
Confidence 35799999999999999999999999999999999999999999999999998 89999999999999999999999 99
Q ss_pred CcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCce-EEEeeeeeeccHHHHHHHhc
Q 009127 104 CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDF-TVLAGDWYRSNHYVLRRLLD 182 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~-~l~~~d~~~~~~~~~~~~~~ 182 (543)
|+|+||++|+|+|++. ++||||||||.+.|+.+||+|+|||+++.. . .+|.|. +|+|+||+++...++.....
T Consensus 145 ~pI~PG~sftY~f~~~-q~GT~WYHsH~~~q~~~GL~G~lIV~~p~~--~---~yD~d~~~l~l~Dw~~~~~~~~~~~~~ 218 (580)
T 3sqr_A 145 CPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPAT--A---DYDEDVGVIFLQDWAHESVFEIWDTAR 218 (580)
T ss_dssp CCBCTTCEEEEEEECC-CCEEEEEEECSTTGGGGTCEEEEEEECCCS--S---CCSEEEEEEEEEEECSSCHHHHHHHHT
T ss_pred CCCCCCCeEEEEEECC-CCcceEEeecccccccCcCEEEEEeeCccc--C---CCCccceEEEEEEEecCCHHHHHHHHh
Confidence 9999999999999995 899999999999999999999999998754 2 348887 99999999998777654443
Q ss_pred cCCCCCCCCeEEEcCCCC---------------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccc
Q 009127 183 SGHNLPFPDGLLINGRGW---------------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQ 247 (543)
Q Consensus 183 ~g~~~~~~~~~liNG~~~---------------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p 247 (543)
.+ ..+.+++++|||+.. ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|
T Consensus 219 ~~-~~~~~d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~VIa~DG~~v~P 297 (580)
T 3sqr_A 219 LG-APPALENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVP 297 (580)
T ss_dssp TS-CCCCBSEEEETTBCCCCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEE
T ss_pred cc-CCCCCceEEECCcccCCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEEEEeCCccCCc
Confidence 32 356789999999974 13789999999999999999999999999999999999999999999
Q ss_pred cccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccC----CCccceEEEEEecCCCCCCCCCCCCCCC-Ccccccccccc
Q 009127 248 NTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFT----PRVLTTTAILHYSNSRRGVSGPIPGGPT-TEIAWSLNQAR 322 (543)
Q Consensus 248 ~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~----~~~~~~~~il~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~ 322 (543)
+.+++|.|+|||||||+|++++.+|+|||++..... ......+|||+|.++.... |..+. ......+..
T Consensus 298 ~~~~~l~i~pGqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~~~~~aiL~Y~~~~~~~----P~~~~~~~~~~~~~~-- 371 (580)
T 3sqr_A 298 YTTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSSIAN----PTSVGTTPRGTCEDE-- 371 (580)
T ss_dssp EEESSEEECTTCEEEEEEECCSCSSEEEEECCCCTTTSCBTTGGGCEEEEESSTTCCCC----CCCCCCCCCCCSCCS--
T ss_pred eEeeEEEEccceEEEEEEEeCCCCCeEEEEEecccccCccCCCCceEEEEEECCCCCCC----CCCCCCCccchhhcc--
Confidence 999999999999999999999888999999976431 1224689999998764221 11110 000000100
Q ss_pred ccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeec-CCCCchhhhcccCCCcccccCCCCCC
Q 009127 323 SIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFV-PADTPLKLADYFKIPGVFTLGSMPTS 401 (543)
Q Consensus 323 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~-~~~~p~~~~~~~~~~~~~~~~~~~~~ 401 (543)
....|.+..+.+.|. ..+.++.+.. ..++...|+|||++|. +++.|+|++.+.+. ...
T Consensus 372 -~~~~L~P~~~~~~~~--------~~~~~~~l~~---~~~~~~~w~iN~~s~~~~~~~P~L~~~~~g~---------~~~ 430 (580)
T 3sqr_A 372 -PVASLVPHLALDVGG--------YSLVDEQVSS---AFTNYFTWTINSSSLLLDWSSPTTLKIFNNE---------TIF 430 (580)
T ss_dssp -CGGGCCBSSCCBCCS--------EEEEEEEEEE---EESSSEEEEETTBCCCCCTTSCHHHHHHTTC---------CCC
T ss_pred -cccccccCCCCCCCC--------ccceEEEEEe---ccCCceeEEECCEecccCCCCCchhhhhcCC---------ccC
Confidence 001233222222221 2233333332 1345678999999997 57889886543210 111
Q ss_pred CCCCCCccceeEEec----CCCcEEEEEEEeCC--CCCCCeeecCCCeEEEeecCCCCCCCC-CCCCCCCCCCcceeEEe
Q 009127 402 PNWGNAYLQTSVMAA----NFREFVEIVFQNWE--DTVQSYHIDGYSFFVVGMDGGQWTPAS-RTRYNLRDTVARSTTQV 474 (543)
Q Consensus 402 p~~~~~~~~~~~~~~----~~g~~v~~~i~N~~--~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~p~~rDTv~v 474 (543)
|. ..+++.+ +.|++|||+|+|.+ .+.||||||||+|+||++|.|.|++.. ...+|+.+|++|||+.|
T Consensus 431 ~~------~~~~~~~~~~~~~~~~VeiVi~n~~~~~~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v 504 (580)
T 3sqr_A 431 PT------EYNVVALEQTNANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAAL 504 (580)
T ss_dssp CG------GGCEEEECC----CCEEEEEEEECSSSCCCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEE
T ss_pred CC------CcceeecccccCCCcEEEEEEeCCCccccceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEe
Confidence 21 2344444 46999999999987 789999999999999999999998653 35789999999999999
Q ss_pred CCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCc-chhccccC
Q 009127 475 YPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKN-ALLCGRAR 536 (543)
Q Consensus 475 p~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~-~~~c~~~~ 536 (543)
+++||++|||++||||.|+|||||++|++.||++.|.+...+ . ....++|++ ...|..|.
T Consensus 505 ~~~g~~~irf~adNPG~W~~HCHi~~H~~~Gm~~~~~e~~~~-i-~~~~~~~~~~~~~C~~~~ 565 (580)
T 3sqr_A 505 PGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVESQSS-I-AVKMTDTAIFEDTCANWN 565 (580)
T ss_dssp CTTSEEEEEEESCSCEEEEEEECSHHHHHTTCEEEEEESGGG-C-CCCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEcCCCeeeEEEECcHHHhhCCCcEEEEECHHH-H-hhccCCcHHHHHhhHHHh
Confidence 999999999999999999999999999999999999775433 2 122235555 45897764
No 3
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-95 Score=787.32 Aligned_cols=473 Identities=23% Similarity=0.325 Sum_probs=371.0
Q ss_pred CeEEEEEEEEEEEecCCC-eeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-CC
Q 009127 27 PYRFFTWKITYGDIYPLG-VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-TT 103 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-tq 103 (543)
++++|+|+|++..+++|| .++.+|+|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++++||+++ ||
T Consensus 1 ~~~~~~~~v~~~~~~pdG~~~~~~~~~Ng~~PGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq 80 (534)
T 1zpu_A 1 ETHTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQ 80 (534)
T ss_dssp CEEEEEEEEEEEEECSSSSCCEEEEEETTBSSCCCEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTB
T ss_pred CEEEEEEEEEEEEecCCCCceEEEEEECCccCCccEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCcccc
Confidence 478999999999999999 8999999999999999999999999999999999 99999999999998899999999 99
Q ss_pred CcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHH-hc
Q 009127 104 CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRL-LD 182 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~-~~ 182 (543)
|+|+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.. |+ .+|+|++|+|+||+++...++... +.
T Consensus 81 ~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~---p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 156 (534)
T 1zpu_A 81 CPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSF---PY-DYDEELSLSLSEWYHDLVTDLTKSFMS 156 (534)
T ss_dssp CCBCTTCEEEEEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTTC---CS-CCSEEEEEEEEEECSSCHHHHHHHHSS
T ss_pred CCcCCCCeEEEEEEeCccceeEEEEEcCcccccCcceeeEEeCCCCC---CC-CCcceEEEEeeccccCCHHHHHHHHhc
Confidence 99999999999999976899999999999999999999999999753 33 558999999999999988776432 22
Q ss_pred c---CCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCC
Q 009127 183 S---GHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQ 259 (543)
Q Consensus 183 ~---g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pge 259 (543)
. ....+.++.+||||+. .+.++|++||+|||||||+|+.+.+.|+|+||+|+||++||.+++|+.++++.|+|||
T Consensus 157 ~~~~~g~~~~~d~~liNG~~--~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~P~~~~~l~l~~gq 234 (534)
T 1zpu_A 157 VYNPTGAEPIPQNLIVNNTM--NLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQ 234 (534)
T ss_dssp TTCTTCCCCCCSEEEETTBS--SCEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESCEEECTTC
T ss_pred cccCCCCCCCCceEEECCCC--ceEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEEEeccCcCccccEeceEEECccc
Confidence 1 2234578999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCC-CcceEEEEeeccC-------CCccceEEEEEecCCCCCCCCCCCCCCC-CccccccccccccccccCC
Q 009127 260 TYSVLVTMDQA-PQDYYIVVSSRFT-------PRVLTTTAILHYSNSRRGVSGPIPGGPT-TEIAWSLNQARSIRWNLTA 330 (543)
Q Consensus 260 R~dv~v~~~~~-~g~y~i~~~~~~~-------~~~~~~~~il~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~ 330 (543)
||||+|++++. .++|||++..... .......++|+|.++... |..+. ......+.+ ..+.+
T Consensus 235 R~dvlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~-----p~~~~~~~~~~~~~~-----~~l~p 304 (534)
T 1zpu_A 235 RYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAAL-----PTQNYVDSIDNFLDD-----FYLQP 304 (534)
T ss_dssp EEEEEEECCSCSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCB-----CCCCCCSCSSCSCCG-----GGCCB
T ss_pred eEEEEEEcCCCCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCC-----CCCCccccccccccc-----cccee
Confidence 99999999864 4789999875421 113467899999876421 11100 000000111 11221
Q ss_pred CCCCCCCCCCCCcccccceEEEEEeccCC-CcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCcc
Q 009127 331 SGPRPNPQGSYHYGMIKISRTITLANSAP-YMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYL 409 (543)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 409 (543)
....+.+ ...++++.+..... ..++...|.|||++|..+..|++++.+.. +.+. ..+.. ...
T Consensus 305 ~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~iNg~s~~~~~~P~L~~~~~~--~~~~-----~~~~~--~~~ 367 (534)
T 1zpu_A 305 YEKEAIY--------GEPDHVITVDVVMDNLKNGVNYAFFNNITYTAPKVPTLMTVLSS--GDQA-----NNSEI--YGS 367 (534)
T ss_dssp SSCCCCC--------CSCSEEEEEEEEEEECTTSCEEEEETTBCCCCCSSCHHHHHTTS--GGGT-----TCGGG--GCS
T ss_pred CCCCCCC--------CCCCeEEEEEEEeeccCCceeEEEECCCcccCCCCCceeeeccc--Cccc-----CCCcc--cCC
Confidence 1111111 13456666544221 12455679999999998899988654321 1111 01110 112
Q ss_pred ceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCC----------CCCCCCCCCCCCCCCCcceeEEeCCCCE
Q 009127 410 QTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGG----------QWTPASRTRYNLRDTVARSTTQVYPRSW 479 (543)
Q Consensus 410 ~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g----------~~~~~~~~~~~~~~p~~rDTv~vp~~g~ 479 (543)
++..+.++.|++|+|+|+|.+.+.||||||||+||||+++.+ .|++.....+ ..+|.|||||.|++++|
T Consensus 368 ~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHGh~F~Vl~~~~~~~~~~~G~p~~~~~~~~~~~-~~~p~~RDTv~V~pgg~ 446 (534)
T 1zpu_A 368 NTHTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAF-PEYPMRRDTLYVRPQSN 446 (534)
T ss_dssp SSCEEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCC-CSSCEEESEEEECTTCE
T ss_pred CceEEEeCCCCEEEEEEeCCCCCCCCeEecCCceEEEeecCCccccccCcccccCccccccc-cCCCCeeeEEEeCCCCE
Confidence 356788999999999999999899999999999999999864 3443322222 46899999999999999
Q ss_pred EEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCc--CCCCCc-chhcccc
Q 009127 480 TAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDE--LPIPKN-ALLCGRA 535 (543)
Q Consensus 480 v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~--~~~p~~-~~~c~~~ 535 (543)
++|||++||||.|+|||||++|++.|||+.|.|...+ . ... .++|++ .+.|..+
T Consensus 447 v~IrF~aDNPG~W~~HCHi~~H~~~GM~~~~~~~~~~-~-~~~~~~~~p~~~~~~C~~~ 503 (534)
T 1zpu_A 447 FVIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDPFG-I-QDAHSQQLSENHLEVCQSC 503 (534)
T ss_dssp EEEEEECCSCEEEEEEECCHHHHHTTCEEEEEECHHH-H-HHCGGGSCCHHHHHHHHHT
T ss_pred EEEEEEeCCCeeEEEEeCchhHhhcCCeEEEEECccc-c-ccccccCCChhHhhhhhcc
Confidence 9999999999999999999999999999999875432 2 122 455655 4566554
No 4
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=100.00 E-value=1.2e-95 Score=786.19 Aligned_cols=475 Identities=23% Similarity=0.319 Sum_probs=367.0
Q ss_pred CCCeEEEEEEEEEEEecCCCe-eEEEEEECCcCCCceEEEecCCEEEEEEEECCC-----CCceeecCcccCCCCCCCCC
Q 009127 25 DSPYRFFTWKITYGDIYPLGV-KQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-----EPFLISWNGLQQRRNSWQDG 98 (543)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~g~-~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-----~~~~iH~HG~~~~~~~~~DG 98 (543)
.+.+.+|+|++++..+.+||+ ++.+|+|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++++||
T Consensus 20 ~~~~~~~~l~i~~~~~~~dg~~~~~~~~~NG~~PGP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DG 99 (521)
T 1v10_A 20 LAATVALDLHILNANLDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDG 99 (521)
T ss_dssp --CCSEEEEEEEEEEECTTSSCCEEEEEESSSSSCCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSC
T ss_pred cccCceEEEEEEEEEEcCCCcceEEEEEECCccCCCcEEEeCCCEEEEEEEECCCCccCCCCceEecCCeeccCCCccCC
Confidence 345568999999999999999 999999999999999999999999999999999 99999999999988899999
Q ss_pred CCC-CCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCC-CCCCCCCCCceEEEeeeeeeccHHH
Q 009127 99 VYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRI-PVPFPPPAGDFTVLAGDWYRSNHYV 176 (543)
Q Consensus 99 ~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~~ 176 (543)
+++ |||+|+||++|+|+|++.+++||||||||.+.|+.+||+|+|||+++.+. +.+|+..++|++|+++||+++...+
T Consensus 100 v~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~D~~~~~~~~ 179 (521)
T 1v10_A 100 PAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTV 179 (521)
T ss_dssp CBTTTBCCBCTTEEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCCC-
T ss_pred CcceeeCCcCCCCeEEEEEecCCCCccEEEEeccCCchhcCceEEEEEcCCcccccccCCCCCceeEEEEcccccCCHHH
Confidence 999 99999999999999997678999999999999999999999999987531 1234333469999999999987665
Q ss_pred HHHHhccCCCCCCCCeEEEcCCCC--------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccccc
Q 009127 177 LRRLLDSGHNLPFPDGLLINGRGW--------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQN 248 (543)
Q Consensus 177 ~~~~~~~g~~~~~~~~~liNG~~~--------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~ 248 (543)
+.. ..+...+.++.++|||+.. ..+.++|++|++|||||||+|+.+.+.|+|+||+|+||++||.+++|+
T Consensus 180 ~~~--~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~p~ 257 (521)
T 1v10_A 180 LFP--NPNKAPPAPDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPL 257 (521)
T ss_dssp --------CCCSCCSEEEETTBCCCSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEE
T ss_pred Hhh--ccCCCCCCCCEEEECCcccCCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEEEecCCccccce
Confidence 431 1222345689999999983 018999999999999999999999999999999999999999999999
Q ss_pred ccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCC---ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccc
Q 009127 249 TYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPR---VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIR 325 (543)
Q Consensus 249 ~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~---~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 325 (543)
.++++.|+|||||||+|++++.+|+|||++....... .....++|+|.++....+...+. +.. .+..
T Consensus 258 ~~~~l~l~pgqR~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~-~~~----~~~~----- 327 (521)
T 1v10_A 258 TVDSLTIFAGQRYSVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAEPTTSQN-SGT----ALNE----- 327 (521)
T ss_dssp EESBEEECTTCEEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTCCSCCCCCCCC-CSC----BCCG-----
T ss_pred eeeeEEEcccceEEEEEEcCCCCCceeeeeccccccccCCCCceeEEEEECCCCCCCCCCCCC-ccc----ccch-----
Confidence 9999999999999999999977899999997653211 12346999998765321111000 000 1110
Q ss_pred cccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCC
Q 009127 326 WNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWG 405 (543)
Q Consensus 326 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~ 405 (543)
.++.+....+.|.... ....++++.+... ..+....|+|||++|..+..|++++.+.+ .... .
T Consensus 328 ~~l~p~~~~~~p~~~~---~~~~~~~~~l~~~--~~~~~~~~~iNg~~~~~~~~P~l~~~~~g---~~~~---------~ 390 (521)
T 1v10_A 328 ANLIPLINPGAPGNPV---PGGADINLNLRIG--RNATTADFTINGAPFIPPTVPVLLQILSG---VTNP---------N 390 (521)
T ss_dssp GGCCBSSCCCCSSCSS---TTCSSEEEECCEE--CCSSSSCCEESSCCCCCCSSCHHHHHHHT---CCCG---------G
T ss_pred hhcccCCcccCCCccc---CCcceEEEEEEEe--cCCceeEEEECCCcccCCCCchhhhhhcC---Cccc---------c
Confidence 1122221111221100 0123455554321 11122369999999988888887654321 1100 0
Q ss_pred CCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEe-CCCCEEEEEE
Q 009127 406 NAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQV-YPRSWTAIYM 484 (543)
Q Consensus 406 ~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~v-p~~g~v~irf 484 (543)
..+.+..++.++.|++++|+++| .+.||||||||+||||+++++. .+++.+|.|||||.| ++++|++|||
T Consensus 391 ~~~~~~~~~~v~~g~~vei~l~N--~~~HP~HLHGh~F~Vl~~~~~~-------~~n~~~p~~rDTV~V~p~gg~v~Irf 461 (521)
T 1v10_A 391 DLLPGGAVISLPANQVIEISIPG--GGNHPFHLHGHNFDVVRTPGSS-------VYNYVNPVRRDVVSIGGGGDNVTFRF 461 (521)
T ss_dssp GSSSTTTEEEECTTCEEEEEEEC--CBSCEEEESSCCEEEEECTTCS-------CCCCSSCCEESEEECCBSSCEEEEEE
T ss_pred cCCCCceEEEecCCCEEEEEEcC--CCCCCEEEccceEEEEecCCCC-------ccccCCCCeeeeEEeCCCCcEEEEEE
Confidence 11124567889999999999999 7899999999999999998652 357788999999999 8999999999
Q ss_pred EecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCC-cchhccccCCCC
Q 009127 485 ALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPK-NALLCGRARGRH 539 (543)
Q Consensus 485 ~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~-~~~~c~~~~~~~ 539 (543)
++||||.|+|||||++|++.|||+.|.|...+. ....++|+ ..+.|..|....
T Consensus 462 ~aDNPG~W~~HCHi~~H~~~GM~~~~~v~~~~~--~~~~~~p~~~~~~C~~~~~~~ 515 (521)
T 1v10_A 462 VTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNI--PIANAISPAWDDLCPKYNANN 515 (521)
T ss_dssp ECCSCEEEEEEESCHHHHTTTCEEEEEESGGGH--HHHSCCCHHHHTHHHHHTTCC
T ss_pred EeCCCeeEEEeeChHHHHhCCCeEEEEECCcch--hhccCCChHHhhhchhhhccC
Confidence 999999999999999999999999998865442 22345564 578999998764
No 5
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=100.00 E-value=5.4e-95 Score=772.95 Aligned_cols=468 Identities=23% Similarity=0.357 Sum_probs=362.1
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCC-----CceeecCcccCCCCCCCCCCCC-C
Q 009127 29 RFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLRE-----PFLISWNGLQQRRNSWQDGVYG-T 102 (543)
Q Consensus 29 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~-----~~~iH~HG~~~~~~~~~DG~p~-t 102 (543)
..|+|+|++..+++||+++.+|+|||++|||+||+++||+|+|+|+|+|++ +++|||||+++++++++||+++ |
T Consensus 5 ~~~~l~i~~~~~~pdg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 84 (495)
T 3t6v_A 5 PVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFIT 84 (495)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTSSSCCEEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred CeEEEEEEEEEEcCCCceEEEEEECCcccCCeEEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 479999999999999999999999999999999999999999999999985 7999999999999999999999 9
Q ss_pred CCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCC-CCCCCCCCCceEEEeeeeeeccHHHHHHHh
Q 009127 103 TCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRI-PVPFPPPAGDFTVLAGDWYRSNHYVLRRLL 181 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 181 (543)
||+|+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.+. ..+|+..++|++|+++||+++....+
T Consensus 85 q~pI~PG~sftY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~---- 160 (495)
T 3t6v_A 85 QCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEM---- 160 (495)
T ss_dssp BCCBCTTCEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCGGGS----
T ss_pred cCCCCCCCeEEEEEEeCCCCceeeeeccchhHHhcCceEEEEEcCccccccccCCCCCceeEEEEecccCCchhhh----
Confidence 9999999999999999778999999999999999999999999986541 12343335678999999999865432
Q ss_pred ccCCCCCCCCeEEEcCCCC--------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeE
Q 009127 182 DSGHNLPFPDGLLINGRGW--------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAAL 253 (543)
Q Consensus 182 ~~g~~~~~~~~~liNG~~~--------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v 253 (543)
.+..+..+++++|||++. ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.++++
T Consensus 161 -~~~~p~~~d~~liNG~g~~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l 239 (495)
T 3t6v_A 161 -GAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEI 239 (495)
T ss_dssp -CSSSCCCCSEEEETTBCCBSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEESBE
T ss_pred -ccCCCCCCcEEEECCcCcCCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEeCCcccCCEEeeeE
Confidence 122234789999999862 24789999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeEEEEEEeCCCCcceEEEEeeccCCC---ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCC
Q 009127 254 DIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPR---VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTA 330 (543)
Q Consensus 254 ~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~---~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~ 330 (543)
.|+|||||||+|++++.+|+|||++....... .....|+|+|.++....+ ....+..... .+. +.+|.+
T Consensus 240 ~i~pGqR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p--~~~~~~~~~~-~~~-----~~~L~p 311 (495)
T 3t6v_A 240 QIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADP--VTVASTVHTK-CLI-----ETDLHP 311 (495)
T ss_dssp EECTTCEEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCC--CCCCCSSCSS-BCC-----GGGCCB
T ss_pred EEcCceEEEEEEECCCCCceEEEEEecccCccccCCCceEEEEEECCCCCCCC--CCCCCCCCcc-ccc-----cccccc
Confidence 99999999999999987899999997643221 124579999987643211 1111100000 010 112222
Q ss_pred CCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccc
Q 009127 331 SGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQ 410 (543)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 410 (543)
....+.|... . ...+++++.+... .++ ..|+|||++|..++.|+|++.+. +.+... .....
T Consensus 312 ~~~~~~p~~~-~--~~~~d~~~~l~~~---~~~-~~w~iNg~s~~~~~~P~L~~~~~---g~~~~~---------~~~~~ 372 (495)
T 3t6v_A 312 LSRNGVPGNP-H--QGGADCNLNLSLG---FAC-GNFVINGVSFTPPTVPVLLQICS---GANTAA---------DLLPS 372 (495)
T ss_dssp SSCCCCSSCS-S--TTCSSEEEECCEE---EET-TEEEETTBCCCCCSSCHHHHHHT---TCCSST---------TSSST
T ss_pred cccccCCCcc-C--CCCCcEEEEEEEE---ecC-cEEEEcCEecCCCCCcchhhhhc---CCcCcc---------cccCC
Confidence 2111111100 0 1134555554431 112 26999999999889998876532 111100 01112
Q ss_pred eeEEecCCCcEEEEEEE-eCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCC-CCEEEEEEEecC
Q 009127 411 TSVMAANFREFVEIVFQ-NWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYP-RSWTAIYMALDN 488 (543)
Q Consensus 411 ~~~~~~~~g~~v~~~i~-N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~-~g~v~irf~adn 488 (543)
..++.++.|++|+|+|+ |...+.||||||||+|+||++++. ..+|+.+|.||||+.|++ ++|++|||++||
T Consensus 373 ~~v~~~~~g~~V~ivl~~n~~~~~HP~HLHGh~F~vl~~~g~-------~~~n~~~P~~rDtv~v~~~g~~~~irf~adn 445 (495)
T 3t6v_A 373 GSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASN-------STSNYDDPIWRDVVSIGGVGDNVTIRFCTDN 445 (495)
T ss_dssp TSEEEECTTCEEEEEEECCSSSCCCEEEETTCCEEEEECTTC-------CCCCSSSCCEESEEECCSTTCEEEEEEECCS
T ss_pred cceEEecCCCEEEEEEccCCCCCCcceeecCCcEEEEecCCC-------CCcccCCCCCccEEEcCCCCcEEEEEEEcCC
Confidence 45788999999999998 677789999999999999987532 247888999999999997 899999999999
Q ss_pred cccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCc-chhccccCC
Q 009127 489 VGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKN-ALLCGRARG 537 (543)
Q Consensus 489 pG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~-~~~c~~~~~ 537 (543)
||.|+|||||++|++.|||+.|. +.|++. ....++|++ ...|..|..
T Consensus 446 PG~W~~HCHi~~H~~~Gm~~~~~-e~~~~~-~~~~~~p~~~~~~C~~~~~ 493 (495)
T 3t6v_A 446 PGPWFLHCHIDWHLDAGFAIVFA-EDIPNT-ASANPVPEAWSNLCPSYDS 493 (495)
T ss_dssp CEEEEEEESCHHHHHTTCEEEEE-ETHHHH-HHHCCCCHHHHHHHHHHHH
T ss_pred CeeEEEEecchhHhhcCCeEEEE-EChhHh-ccccCCCHHHHHHhhHhhc
Confidence 99999999999999999999995 444432 122345655 568987653
No 6
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=100.00 E-value=3.2e-94 Score=766.94 Aligned_cols=468 Identities=24% Similarity=0.390 Sum_probs=363.7
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCC-----CceeecCcccCCCCCCCCCCCC-C
Q 009127 29 RFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLRE-----PFLISWNGLQQRRNSWQDGVYG-T 102 (543)
Q Consensus 29 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~-----~~~iH~HG~~~~~~~~~DG~p~-t 102 (543)
..|+|+|++..+++||+++.+|+|||++|||+||+++||+|+|+|+|+|++ +++|||||+++++++++||+++ |
T Consensus 4 ~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 83 (499)
T 3pxl_A 4 PVADLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFIN 83 (499)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTBSSCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred ceEEEEEEEEEEcCCCcEEEEEEECCcccCCeEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 479999999999999999999999999999999999999999999999985 7999999999999999999999 9
Q ss_pred CCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCC-CCCCCCCCCceEEEeeeeeeccHHHHHHHh
Q 009127 103 TCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRI-PVPFPPPAGDFTVLAGDWYRSNHYVLRRLL 181 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 181 (543)
||+|+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.+. ..+|+..++|++|+++||+++....
T Consensus 84 q~pI~PG~s~tY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~~~~l~l~Dw~~~~~~~----- 158 (499)
T 3pxl_A 84 QCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKL----- 158 (499)
T ss_dssp BCCBCTTCEEEEEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCTTT-----
T ss_pred cCCCCCCCeEEEEEEcCCCCceeeeeccchhHHhccceeEEEEcCCcccccccCCCCCceEEEEEEcccCCcccc-----
Confidence 9999999999999999778999999999999999999999999986541 1234333567899999999975432
Q ss_pred ccCCCCCCCCeEEEcCCCC-------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEE
Q 009127 182 DSGHNLPFPDGLLINGRGW-------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALD 254 (543)
Q Consensus 182 ~~g~~~~~~~~~liNG~~~-------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~ 254 (543)
.+..+..+++++|||++. ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.++++.
T Consensus 159 -~~~~p~~~d~~liNG~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~ 237 (499)
T 3pxl_A 159 -GPRFPGGADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQ 237 (499)
T ss_dssp -SCSSCSSCSEEEETTBCCCTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESBEE
T ss_pred -ccCCCCCCcEEEECCCCcCCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEECCcccCceEeeeEE
Confidence 122334789999999963 257899999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeEEEEEEeCCCCcceEEEEeeccCCC---ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCC
Q 009127 255 IHLGQTYSVLVTMDQAPQDYYIVVSSRFTPR---VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTAS 331 (543)
Q Consensus 255 l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~---~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~ 331 (543)
|+|||||||+|++++.+|+|||++....... .....|+|+|.++....+.. +..+ .. . .+. +.+|.+.
T Consensus 238 i~pGqR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~-~~~~-~~-~-~~~-----~~~L~p~ 308 (499)
T 3pxl_A 238 IFAAQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTT-NQTT-SV-K-PLN-----EVDLHPL 308 (499)
T ss_dssp ECTTCEEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCC-CCCC-CS-S-BCC-----GGGCCBS
T ss_pred ECCCcEEEEEEECCCCCceEEEEEecccCccccCCCceEEEEEeCCCCCCCCCC-CCCC-CC-c-ccc-----ccccccc
Confidence 9999999999999987899999997643221 12457999998764321110 0000 00 0 010 1122222
Q ss_pred CCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccce
Q 009127 332 GPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQT 411 (543)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 411 (543)
...+.|... ....+++++.+... .++ ..|+|||++|..++.|+|++.+.+ ..... ......
T Consensus 309 ~~~~~p~~~---~~~~~d~~~~l~~~---~~~-~~w~iNg~s~~~~~~P~L~~~~~g---~~~~~---------~~~~~~ 369 (499)
T 3pxl_A 309 VSTPVPGAP---SSGGVDKAINMAFN---FNG-SNFFINGASFVPPTVPVLLQILSG---AQTAQ---------DLLPSG 369 (499)
T ss_dssp SCCCCSSCS---STTCSSEEEECCEE---ECS-SCEEETTBCCCCCSSCHHHHHHTT---CCSTT---------TSSSTT
T ss_pred ccccCCCcc---cCCCCcEEEEEEEE---ecC-cEEEEcCEecCCCCCchhhhhhcC---Ccccc---------ccCCCc
Confidence 211111100 01134566655432 122 269999999998899988765421 11100 011124
Q ss_pred eEEecCCCcEEEEEEE---eCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCC---CCEEEEEEE
Q 009127 412 SVMAANFREFVEIVFQ---NWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYP---RSWTAIYMA 485 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~---N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~---~g~v~irf~ 485 (543)
.++.++.|++|+|+|+ |...+.||||||||+|+||+.++. ..+|+.+|.+|||+.|++ ++|++|||+
T Consensus 370 ~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh~F~Vl~~~g~-------~~~n~~~P~~rDtv~v~~~~pg~~~~irf~ 442 (499)
T 3pxl_A 370 SVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSAGS-------TVYNYDNPIFRDVVSTGTPAAGDNVTIRFD 442 (499)
T ss_dssp SEEEECTTCEEEEEEECCTTSCSCSCEEEETTCCEEEEECTTC-------CCCCSSSCCEESEEECCCGGGTCEEEEEEE
T ss_pred eeEEecCCCEEEEEEecCcccCCCCccceecCCcEEEEeccCC-------cccccCCCCccceEEcCCcCCCcEEEEEEE
Confidence 5788999999999999 566788999999999999987531 247888999999999997 999999999
Q ss_pred ecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCCc-chhccccCCCC
Q 009127 486 LDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPKN-ALLCGRARGRH 539 (543)
Q Consensus 486 adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~~-~~~c~~~~~~~ 539 (543)
+||||.|+|||||++|++.|||+.| ++.+++. ....++|++ ...|..|...+
T Consensus 443 adnPG~W~~HCHi~~H~~~Gm~~~~-~e~~~~~-~~~~~~p~~~~~~C~~~~~~~ 495 (499)
T 3pxl_A 443 TNNPGPWFLHCHIDFHLEGGFAVVM-AEDTPDV-KAVNPVPQAWSDLCPTYDALD 495 (499)
T ss_dssp CCSCEEEEEEESSHHHHHTTCEEEE-EESGGGH-HHHSCCCHHHHTHHHHHHTSC
T ss_pred cCCCceEEEEeCChhHhhCCCcEEE-EEChhHh-ccccCCCHHHHHhhhHhhccC
Confidence 9999999999999999999999999 4555532 222345655 56998886654
No 7
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=100.00 E-value=4.7e-93 Score=763.56 Aligned_cols=464 Identities=26% Similarity=0.404 Sum_probs=361.6
Q ss_pred EEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-----CCceeecCcccCCCCCCCCCCCC-CC
Q 009127 30 FFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-----EPFLISWNGLQQRRNSWQDGVYG-TT 103 (543)
Q Consensus 30 ~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-----~~~~iH~HG~~~~~~~~~DG~p~-tq 103 (543)
+|+|++++..+.+||+++.+|+|||++ ||+|||++||+|+|+|+|+|+ ++++|||||+++.+++++||+++ +|
T Consensus 6 ~~~l~i~~~~~~~~g~~~~~~~~NG~~-GP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vtq 84 (503)
T 1hfu_A 6 VDTMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQ 84 (503)
T ss_dssp EEEEEEEEEEECTTSCCEEEEEETTBS-SCEEEEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTTB
T ss_pred eEEEEEEEEEECCCCeEEEEEEECCcc-CCcEEEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCccccc
Confidence 699999999999999999999999999 999999999999999999999 99999999999988899999999 99
Q ss_pred CcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCC-CCCCCCCCCceEEEeeeeeeccHHHHHHHhc
Q 009127 104 CPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRI-PVPFPPPAGDFTVLAGDWYRSNHYVLRRLLD 182 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 182 (543)
|+|+||++|+|+|++.+++||||||||.+.|+.+||+|+|||+++.+. +.+|...++|++|+++||+++...++.
T Consensus 85 ~~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~~---- 160 (503)
T 1hfu_A 85 CPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQ---- 160 (503)
T ss_dssp CCBCTTCEEEEEECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSTTSEEEEEEECSSCGGGCC----
T ss_pred CCcCCCCeEEEEEEeCCCCccEEEEecchhhhhCcceeeEEEcCCCCCcccCCCCCCceEEEEEcccccCChHHhc----
Confidence 999999999999997678999999999999999999999999987531 223433346999999999998765432
Q ss_pred cCCCCCCCCeEEEcCCCC-------CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEE
Q 009127 183 SGHNLPFPDGLLINGRGW-------NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDI 255 (543)
Q Consensus 183 ~g~~~~~~~~~liNG~~~-------~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l 255 (543)
..+.++.++|||+.. ..+.++|++|++|||||||+|+.+.+.|+|+||+|+||++||.+++|+.++++.|
T Consensus 161 ---~~~~~d~~liNG~~~~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~l 237 (503)
T 1hfu_A 161 ---GAAQPDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQI 237 (503)
T ss_dssp ------CCSEEEETTBCCBTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEESBEEE
T ss_pred ---CCCCCCEEEECcccccCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEEEeccCccccccccCeEEE
Confidence 114689999999982 1189999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeCCCCcceEEEEeeccCCC-------ccceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccc
Q 009127 256 HLGQTYSVLVTMDQAPQDYYIVVSSRFTPR-------VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNL 328 (543)
Q Consensus 256 ~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~-------~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l 328 (543)
+|||||||+|++++.+|+|||++....... .....++|+|.++....+.. +..|. . ..+.. ..+
T Consensus 238 ~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~-~~~~~-~--~~l~~-----~~l 308 (503)
T 1hfu_A 238 FTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTT-SANPN-P--AQLNE-----ADL 308 (503)
T ss_dssp CTTCEEEEEEECCSCSSEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSCCCC-CCCSS-C--CBCCG-----GGC
T ss_pred cccceEEEEEEcCCCccceeeeeccccCCcccccccCCCceEEEEEECCCCCCCCCC-CCCCc-c--CCCcc-----ccc
Confidence 999999999999977899999997643211 12347999998765321110 00110 0 01111 112
Q ss_pred CCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCc
Q 009127 329 TASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAY 408 (543)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 408 (543)
.+....+.|.... ....++++.+... .++. .|+|||++|..+..|++++.+. +.+.. ...+
T Consensus 309 ~p~~~~~~p~~~~---~~~~~~~~~l~~~---~~~~-~~~iNg~~~~~~~~P~l~~~~~---g~~~~---------~~~~ 369 (503)
T 1hfu_A 309 HALIDPAAPGIPT---PGAADVNLRFQLG---FSGG-RFTINGTAYESPSVPTLLQIMS---GAQSA---------NDLL 369 (503)
T ss_dssp BBSSSCSCSSCSS---TTCSSEEEECCEE---EETT-EEEETTBCCCCCSSCHHHHHHT---TCCSG---------GGSS
T ss_pred cccCccCCCCccc---CCcceEEEEEEee---ccCc-eEEECCCccCCCCCcchhhhhc---CCccc---------ccCC
Confidence 2221111121100 0123444544321 1122 7999999999888888766432 11110 0112
Q ss_pred cceeEEecCCCcEEEEEEE-eCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEe-CCCCEEEEEEEe
Q 009127 409 LQTSVMAANFREFVEIVFQ-NWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQV-YPRSWTAIYMAL 486 (543)
Q Consensus 409 ~~~~~~~~~~g~~v~~~i~-N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~v-p~~g~v~irf~a 486 (543)
.+..++.++.|+++||+++ |.+.+.||||||||+||||+++++. .+++.+|.|||||.| ++++|++|||++
T Consensus 370 ~~~~~~~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~-------~~n~~~p~~rDTV~V~ppg~~v~irf~a 442 (503)
T 1hfu_A 370 PAGSVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSS-------TYNFVNPVKRDVVSLGVTGDEVTIRFVT 442 (503)
T ss_dssp STTSEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCC-------CCCCSSBCEESEEECCSTTCEEEEEEEC
T ss_pred CCceEEEccCCCEEEEEEECCCCCCCCCEEEecceEEEEecCCCC-------ccccCCCCeeeeEEecCCCceEEEEEEc
Confidence 3457788999999999999 5557899999999999999998653 356788999999999 999999999999
Q ss_pred cCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCCCC-cchhccccCCC
Q 009127 487 DNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPIPK-NALLCGRARGR 538 (543)
Q Consensus 487 dnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~p~-~~~~c~~~~~~ 538 (543)
||||.|+|||||++|++.|||+.|.|...+. ....++|+ ..+.|+.|...
T Consensus 443 dnPG~W~~HCHil~H~~~GM~~~~~v~~~~~--~~~~~~p~~~~~~C~~~~~~ 493 (503)
T 1hfu_A 443 DNPGPWFFHCHIEFHLMNGLAIVFAEDMANT--VDANNPPVEWAQLCEIYDDL 493 (503)
T ss_dssp CSCEEEEEEESSHHHHHTTCEEEEEECHHHH--HHHCCCCHHHHHHHHHHHTC
T ss_pred CCCeeeeEecCchhHhhCCCeEEEEECchhh--hhccCCChHHhhhccchhhc
Confidence 9999999999999999999999998864432 12344564 47899988765
No 8
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=100.00 E-value=1.6e-92 Score=767.56 Aligned_cols=479 Identities=23% Similarity=0.359 Sum_probs=368.5
Q ss_pred cCCCeEEEEEEEEEEE--ecCCCee-EEEEEECCcCCCceEEEecCCEEEEEEEECC-CCCceeecCcccCCCCCCCCCC
Q 009127 24 GDSPYRFFTWKITYGD--IYPLGVK-QQGILINGQFPGPQIDAVTNDNLIISVYNYL-REPFLISWNGLQQRRNSWQDGV 99 (543)
Q Consensus 24 ~~~~~~~~~l~~~~~~--~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~ 99 (543)
+.+.+++|+|++++.. +.+||+. +.+|+|||++|||+|||++||+|+|+|+|+| +++++|||||+++.+++++||+
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~Ng~~PGP~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~ 108 (559)
T 2q9o_A 29 DTGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGA 108 (559)
T ss_dssp CCCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTBSSCCCEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCC
T ss_pred CCCeEEEEEEEEEEeEeeECCCCccceEEEEECCcccCCcEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCC
Confidence 3456899999999999 8999999 9999999999999999999999999999999 6899999999999888999999
Q ss_pred CC-CCCcCCC-CCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCce-EEEeeeeeeccHHH
Q 009127 100 YG-TTCPIPP-GKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDF-TVLAGDWYRSNHYV 176 (543)
Q Consensus 100 p~-tq~~i~P-G~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~-~l~~~d~~~~~~~~ 176 (543)
++ +||+|+| |++|+|+|+++ ++||||||||.+.|+.+||+|+|||+++.. . .+|.|. +|+|+||+++...+
T Consensus 109 ~~~tq~~I~P~G~~~~Y~f~~~-q~GT~wYH~H~~~q~~~Gl~G~liV~~~~~--~---~~d~d~~~l~l~Dw~~~~~~~ 182 (559)
T 2q9o_A 109 NGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPAS--L---PYDIDLGVFPITDYYYRAADD 182 (559)
T ss_dssp BTTTBCCBCTTTEEEEEEEECC-SCEEEEEEECSTTGGGGTCEEEEEEECCCS--S---CCSEEEEEEEEEEECSSCHHH
T ss_pred CccccCccCCCCCeEEEEEECC-CCEEEEEEEcccchhcCCceEEEEecCCCc--C---CCcccceEEEEeccccCCHHH
Confidence 99 9999999 99999999995 799999999999999999999999998754 2 347887 99999999998776
Q ss_pred HHHHhccCCCCCCCCeEEEcCCCCC-------cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccc
Q 009127 177 LRRLLDSGHNLPFPDGLLINGRGWN-------GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNT 249 (543)
Q Consensus 177 ~~~~~~~g~~~~~~~~~liNG~~~~-------~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~ 249 (543)
+..... ....+.++.++|||+... .+.++|++|++|||||||+|+.+.+.|+|+||+|+||++||.+++|+.
T Consensus 183 ~~~~~~-~~~~~~~d~~liNG~~~~~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~p~~ 261 (559)
T 2q9o_A 183 LVHFTQ-NNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMT 261 (559)
T ss_dssp HHHHHT-TSCCCCBSEEEETTBCBCTTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEE
T ss_pred Hhhhhh-cCCCCccceeEECCccccCcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEEEecCCcccCceE
Confidence 543222 223456899999999841 368999999999999999999999999999999999999999999999
Q ss_pred cCeEEEcCCCeEEEEEEeCCCCcceEEEEee--cc---CCCccceEEEEEecCCCCCCCCCCCCCCCCcccccccccccc
Q 009127 250 YAALDIHLGQTYSVLVTMDQAPQDYYIVVSS--RF---TPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSI 324 (543)
Q Consensus 250 ~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~--~~---~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 324 (543)
++++.|+|||||||+|++++.+|+|||++.. .. ........++|+|.++....+...+... .+. ..++.
T Consensus 262 ~~~l~l~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~ail~y~~~~~~~P~~~~~~~-~~~-~~~~~---- 335 (559)
T 2q9o_A 262 VDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPP-VDH-QCLDT---- 335 (559)
T ss_dssp ESCEEECTTCEEEEEEECCSCSSEEEEEEECCGGGTTCCBSSSCCEEEEEETTSCCSCCCCCCCCC-CCC-TTCCC----
T ss_pred eCeEEEccEEEEEEEEECCCCCCcEEEEEEeccccccCCCCCCceeEEEEECCCCCCCCCCCCCcC-CCc-ccccc----
Confidence 9999999999999999999778999999976 21 1223456899999876531111110000 000 00110
Q ss_pred ccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecC-CCCchhhhcccCCCcccccCCCCCCCC
Q 009127 325 RWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVP-ADTPLKLADYFKIPGVFTLGSMPTSPN 403 (543)
Q Consensus 325 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~-~~~p~~~~~~~~~~~~~~~~~~~~~p~ 403 (543)
..+.+..+.+.|...+ ....++++.+.... ..++...|+|||++|.. +..|+|.+...+. ...|
T Consensus 336 -~~l~p~~~~~~p~~~~---~~~~~~~~~~~~~~-~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~---------~~~~- 400 (559)
T 2q9o_A 336 -LDVRPVVPRSVPVNSF---VKRPDNTLPVALDL-TGTPLFVWKVNGSDINVDWGKPIIDYILTGN---------TSYP- 400 (559)
T ss_dssp -SCCCBSSCCBCCCTTC---CCCGGGEEEEEEEC-SSSSSCEEEETTBCCCCCTTSCHHHHHHHTC---------CCCC-
T ss_pred -cccccCCCCCCCCccc---ccceeEEEEEEeec-CCCceEEEEECCEecccCCCCCcHhHhhcCC---------ccCC-
Confidence 1122111111111110 01122344443211 12345689999999964 4678775433211 0111
Q ss_pred CCCCccceeEEecC-CCcEEEEEEEeCC----CCCCCeeecCCCeEEEeecC---------CCCCCC-CCCCCCCCCCCc
Q 009127 404 WGNAYLQTSVMAAN-FREFVEIVFQNWE----DTVQSYHIDGYSFFVVGMDG---------GQWTPA-SRTRYNLRDTVA 468 (543)
Q Consensus 404 ~~~~~~~~~~~~~~-~g~~v~~~i~N~~----~~~HP~HlHG~~F~Vl~~~~---------g~~~~~-~~~~~~~~~p~~ 468 (543)
.+.+++.++ .+++++|+|+|.+ .+.||||||||+||||+++. |.|++. +...+++.+|.|
T Consensus 401 -----~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~ 475 (559)
T 2q9o_A 401 -----VSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPR 475 (559)
T ss_dssp -----GGGCEEEECCSSCEEEEEEEECTTSSCCCCEEEEESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCE
T ss_pred -----CCceEEEcCCCCEEEEEEEeCCCccccCCCCcEEECCCceEEEecccccccccccccccCccccccccccCCCCc
Confidence 234566665 4689999999976 68999999999999999987 666542 124578889999
Q ss_pred ceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCCCCCCCcCCC--CC-cchhccccCC
Q 009127 469 RSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPANSWRDELPI--PK-NALLCGRARG 537 (543)
Q Consensus 469 rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~~~~~~~~~--p~-~~~~c~~~~~ 537 (543)
||||.|++++|++|||++||||.|||||||++|++.|||+.|.|...+ . ....++ |+ ..++|+.|..
T Consensus 476 RDTV~Vp~~g~v~IrF~adNPG~W~~HCHil~H~~~GM~~~~~v~~~~-~-~~~~~~~~p~~~~~~C~~~~~ 545 (559)
T 2q9o_A 476 RDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPAD-L-RQRISQEDEDDFNRVCDEWRA 545 (559)
T ss_dssp ESEEEECTTSEEEEEEECCSCEEEEEEECCHHHHHTTCEEEEEECHHH-H-GGGCCHHHHHHHHHHHHHHHH
T ss_pred cceEEccCCccEEEEEEcCCCeeEEEEecchhHhhcCCeEEEEECcch-h-hhccccCCchhhhhhcccccc
Confidence 999999999999999999999999999999999999999999885433 1 223333 54 4689998754
No 9
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=100.00 E-value=7.9e-87 Score=704.58 Aligned_cols=400 Identities=19% Similarity=0.251 Sum_probs=324.8
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCC
Q 009127 24 GDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTT 103 (543)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq 103 (543)
+...+++|+|+++++.+.++|+++.+|+|||++|||+|||++||+|+|+|+|+|+++++|||||+++. +++||++
T Consensus 12 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~~--- 86 (439)
T 2xu9_A 12 SQGGLLSLKLSATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPIS--PKVDDPF--- 86 (439)
T ss_dssp CBTTEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEECTTCEEEEEEEECSSSCBCCEEETCCCC--TTTSCTT---
T ss_pred cCCCeEEEEEEEEEEEEEcCCceEEEEEECCcccCCEEEEeCCCEEEEEEEECCCCCcceEeCCCCCC--ccccCCc---
Confidence 34567899999999999999999999999999999999999999999999999999999999999875 4899997
Q ss_pred CcCCCCCeEEEEEEeC-CCcccceecCCc----hhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHH--
Q 009127 104 CPIPPGKNFTYVLQAK-DQIGSYFYFPSF----LFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYV-- 176 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~-~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~-- 176 (543)
+.|+||++|+|+|+++ +++||||||||. +.|+.+||+|+|||+++.+. .+...+++|++|+++||+++....
T Consensus 87 ~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~-~~~~~~~~e~~l~l~D~~~~~~~~~~ 165 (439)
T 2xu9_A 87 LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDA-IPELREAEEHLLVLKDLALQGGRPAP 165 (439)
T ss_dssp CCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCEEEEECCGGGG-SHHHHTSEEEEEEEEEECEETTEECC
T ss_pred ccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeEEEEEcCcccc-CccCCCCCcEEEEEEeeeeCCCCcCC
Confidence 6799999999999986 479999999996 57999999999999986532 111135789999999999875310
Q ss_pred --HHHHhccCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc-cccccCeE
Q 009127 177 --LRRLLDSGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT-LQNTYAAL 253 (543)
Q Consensus 177 --~~~~~~~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~-~p~~~~~v 253 (543)
....+ . ...++.++|||+. .|.++|++| +|||||||+|+.+.+.|+|+||+|+||+.||.++ +|+.++++
T Consensus 166 ~~~~~~~-~---g~~~~~~~iNG~~--~p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~~p~~~~~l 238 (439)
T 2xu9_A 166 HTPMDWM-N---GKEGDLVLVNGAL--RPTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSEL 238 (439)
T ss_dssp CCHHHHH-H---CCCCSEEEETTEE--SCEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEEESCE
T ss_pred CCccccc-c---CCCCCEEEECCcc--CCcEEecCC-eEEEEEEecCCCceEEEEECCceEEEEecCCCCCCCceEeceE
Confidence 00011 1 1346899999999 899999999 9999999999999999999999999999999997 89999999
Q ss_pred EEcCCCeEEEEEEeCCCCcceEEEEeeccCC------------------CccceEEEEEecCCCCCCCCCCCCCCCCccc
Q 009127 254 DIHLGQTYSVLVTMDQAPQDYYIVVSSRFTP------------------RVLTTTAILHYSNSRRGVSGPIPGGPTTEIA 315 (543)
Q Consensus 254 ~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~------------------~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~ 315 (543)
.|+|||||||+|++++ +|+|+|++...... ......++++|.++..+ .++|..
T Consensus 239 ~l~pgeR~dv~v~~~~-~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~p~~------ 309 (439)
T 2xu9_A 239 LLAPGERAEVLVRLRK-EGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPKP--LPLPKA------ 309 (439)
T ss_dssp EECTTCEEEEEEECCS-SEEEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSCCC--CCCCSC------
T ss_pred EECCceeEEEEEEcCC-CceEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCCCcc--ccCccc------
Confidence 9999999999999996 89999998643211 11246778888765421 111110
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCccccc
Q 009127 316 WSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTL 395 (543)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~ 395 (543)
+ .+....+.+ ..++++.+.... .+ ..|.|||++|..+..+
T Consensus 310 --l----------~~~~~l~~~---------~~~r~~~l~~~~---~g-~~~~iNg~~~~~~~~~--------------- 349 (439)
T 2xu9_A 310 --L----------SPFPTLPAP---------VVTRRLVLTEDM---MA-ARFFINGQVFDHRRVD--------------- 349 (439)
T ss_dssp --C----------CCCCCCCCC---------SEEEEEEEEEEG---GG-TEEEETTBCCCTTCCC---------------
T ss_pred --C----------CCcccCCCC---------CcceEEEEEeec---cC-ceEeECCEECCCCCCc---------------
Confidence 0 000001111 123666665421 11 3699999998532111
Q ss_pred CCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeC
Q 009127 396 GSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVY 475 (543)
Q Consensus 396 ~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp 475 (543)
+.++.|++++|+|+|.+.+.||||||||+||||+++++.+ .+|.|||||.|+
T Consensus 350 ------------------~~~~~g~~~~~~~~N~~~~~HP~HLHG~~F~Vl~~~g~~~----------~~p~~rDTv~v~ 401 (439)
T 2xu9_A 350 ------------------LKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVLSVGGRPF----------PYRAWKDVVNLK 401 (439)
T ss_dssp ------------------EEECTTCEEEEEEEECSSSCEEEEESSCCBEEEEETTEEC----------SSCCCBSEEEEC
T ss_pred ------------------eecCCCCEEEEEEEcCCCCCCCceeCCCcEEEEeeCCCCC----------CCCCCeEEEEeC
Confidence 3467899999999999999999999999999999986543 368999999999
Q ss_pred CCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEe
Q 009127 476 PRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 476 ~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
++++++|||++||||.|+|||||++|||.|||+.|+|.
T Consensus 402 p~~~v~i~f~adnpG~w~~HCHil~H~~~GMm~~~~Vg 439 (439)
T 2xu9_A 402 AGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439 (439)
T ss_dssp TTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEEEcCCCCCEEEECCcchhhhcCCcEEEEeC
Confidence 99999999999999999999999999999999999984
No 10
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=100.00 E-value=4.4e-86 Score=699.70 Aligned_cols=403 Identities=18% Similarity=0.175 Sum_probs=320.6
Q ss_pred CeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCc
Q 009127 27 PYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCP 105 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~ 105 (543)
.+++|+|++++..+++ +|.++.+|+|||++|||+|||++||+|+|+|+|+|+++++|||||+++.+. +||++ ||+
T Consensus 17 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~--~DG~~--~~~ 92 (451)
T 2uxt_A 17 RGQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGP--LMGGP--ARM 92 (451)
T ss_dssp SSCCEEEEEEECCGGGCSSSSSCCEEETTSSBCCEEEEETTCEEEEEEEECSSSCBCEEEETCCCCGG--GSCSG--GGC
T ss_pred CceEEEEEEEEEEEEcCCCceeEEEEECCcccCceEEEeCCCEEEEEEEECCCCCccEEECCccCCCC--CCCCC--cCc
Confidence 3578999999999987 899999999999999999999999999999999999999999999998764 99999 899
Q ss_pred CCCCCeEEEEEEeCCCcccceecCCc----hhhhhccceeEEEEecCCCCCCCCCC--CCCceEEEeeeeeeccHHHHHH
Q 009127 106 IPPGKNFTYVLQAKDQIGSYFYFPSF----LFHKAAGAFGGIRIWSRPRIPVPFPP--PAGDFTVLAGDWYRSNHYVLRR 179 (543)
Q Consensus 106 i~PG~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 179 (543)
|+||++|+|+|++.+++||||||||. +.|+.+||+|+|||+++.+...+++. .++|++|+++||+++...++.
T Consensus 93 i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~~p~~y~~~e~~l~l~D~~~~~~~~~~- 171 (451)
T 2uxt_A 93 MSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPE- 171 (451)
T ss_dssp BCTTCEECCEEECCSCSEEEEEEECCTTTHHHHHHTTCEEEEEEECHHHHHSSSCCCBTTTEEEEEEEEEEECTTSCEE-
T ss_pred CCCCCeEEEEEEcCCCCcceEEecCCCCchhhhHhhcceEEEEEecCcccccCCCccCCCceEEEEEEeeecCCCCcee-
Confidence 99999999999996559999999997 78999999999999997643222322 478999999999997654321
Q ss_pred HhccCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEE-eCCeeEEEEEcCccc-cccccCeEEEcC
Q 009127 180 LLDSGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRI-QGHSMKLVEVEGSHT-LQNTYAALDIHL 257 (543)
Q Consensus 180 ~~~~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i-~g~~~~via~DG~~~-~p~~~~~v~l~p 257 (543)
+...+.....++.++|||+. .|.++|++| +|||||||+|+.+.+.|+| +||+|+||++||+++ +|..++++.|+|
T Consensus 172 ~~~~~~~~~~~d~~liNG~~--~p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~vi~~DG~~~~~P~~~~~l~l~p 248 (451)
T 2uxt_A 172 YNEPGSGGFVGDTLLVNGVQ--SPYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAP 248 (451)
T ss_dssp CCCCSSSCCCCSEEEETTEE--SCEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEEEECSSSEEEEEEEESSEEECT
T ss_pred cccccCCCCcCCEEEECCcc--cceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEEEEeCCCccCCceEeceEEECc
Confidence 00112234568999999999 899999999 9999999999999999999 899999999999987 799999999999
Q ss_pred CCeEEEEEEeCCCCcceEEEEeeccCC-----------CccceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccc
Q 009127 258 GQTYSVLVTMDQAPQDYYIVVSSRFTP-----------RVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRW 326 (543)
Q Consensus 258 geR~dv~v~~~~~~g~y~i~~~~~~~~-----------~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 326 (543)
||||||+|+++ .++.|+|++...... ......++++|........ .....| .
T Consensus 249 geR~dvlv~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~-~~~~~p---------------~ 311 (451)
T 2uxt_A 249 GERREILVDMS-NGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPL-VTDSLP---------------M 311 (451)
T ss_dssp TCEEEEEEECT-TCCCEEEEC----------------CCCCSCCEEEEEEECSCCC-----CCC---------------S
T ss_pred eeEEEEEEEeC-CCCEEEEEecCccccccccccccccCCCCCCcceEEEEecCCCcC-ccccCc---------------c
Confidence 99999999999 478999997653210 1122356777765432110 000000 1
Q ss_pred ccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCC
Q 009127 327 NLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGN 406 (543)
Q Consensus 327 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~ 406 (543)
.|.+....+. ....++++.+.. .|+|||++|..+..
T Consensus 312 ~L~~~~~~~~--------~~~~~~~~~l~~---------~~~iNg~~f~~~~~--------------------------- 347 (451)
T 2uxt_A 312 RLLPTEIMAG--------SPIRSRDISLGD---------DPGINGQLWDVNRI--------------------------- 347 (451)
T ss_dssp CSSSSCCCCC--------CCSEEEEEEECS---------SSSBTTBCCCTTCC---------------------------
T ss_pred ccCCCCCCCC--------CCcceEEEEEee---------EEEECCEeCCCCCC---------------------------
Confidence 1111111110 123456665531 48999999853211
Q ss_pred CccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 009127 407 AYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMAL 486 (543)
Q Consensus 407 ~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 486 (543)
.+.++.|++++|+|+|. +.||||||||+||||++++.. ++..+|.|||||.| +++++|+|++
T Consensus 348 ------~~~~~~G~~~~~~l~N~--~~HP~HLHGh~F~Vl~~~G~~--------~~~~~p~~rDTv~v--g~~~~i~~~~ 409 (451)
T 2uxt_A 348 ------DVTAQQGTWERWTVRAD--EPQAFHIEGVMFQIRNVNGAM--------PFPEDRGWKDTVWV--DGQVELLVYF 409 (451)
T ss_dssp ------CEEEETTCEEEEEEEEE--EEEEEEETTCEEEEEEETTBC--------CCGGGSSCBSEEEE--EEEEEEEEEC
T ss_pred ------cEEcCCCCEEEEEEECC--CCcCeEECCceEEEEeeCCcC--------CCcccCCCccEEEE--CCEEEEEEEe
Confidence 13567899999999997 799999999999999997532 34567899999999 8999999999
Q ss_pred cCccc----ceeeecchhhhhcccEEEEEEecCC
Q 009127 487 DNVGM----WNIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 487 dnpG~----w~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
||||. |||||||++|||.|||+.|+|...+
T Consensus 410 dnpg~~~g~w~~HCHil~H~d~GMm~~~~v~~~~ 443 (451)
T 2uxt_A 410 GQPSWAHFPFYFNSQTLEMADRGSIGQLLVNPVP 443 (451)
T ss_dssp CSCCBTTBCEEEEESSHHHHHTTCEEEEEEECSC
T ss_pred CCCCCCCCceEEeCCchhHHhCCCcEEEEEccCc
Confidence 99988 9999999999999999999998654
No 11
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=100.00 E-value=1.1e-83 Score=692.77 Aligned_cols=417 Identities=15% Similarity=0.168 Sum_probs=324.1
Q ss_pred CeEEEEEEEEEEE--ecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCC
Q 009127 27 PYRFFTWKITYGD--IYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTC 104 (543)
Q Consensus 27 ~~~~~~l~~~~~~--~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~ 104 (543)
.+++|+|++++.. +.++|..+.+|+|||++|||+|||++||+|+|+|+|+|+++++|||||+++.. .+||++ ||
T Consensus 35 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DG~~--~~ 110 (534)
T 3abg_A 35 EIWYYEVEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRA--AFDGWA--ED 110 (534)
T ss_dssp CCEEEEEEEECCEECCSTTTCCEECBEETSCSSEEEEEEETTCCEEEEEEECSSSCBCEEEETCCCCT--TTTTCS--SS
T ss_pred ceEEEEEEEEEEEEEecCCCCceeEEEECCcCcCceEEEeCCcEEEEEEEECCCCCceEEECCCcCCC--CCCCCC--CC
Confidence 3578999999755 57889899999999999999999999999999999999999999999998764 699997 89
Q ss_pred cCCCCCeEEEEEEeCCCcccceecCCch----hhhhccceeEEEEecCCCCCCCCCC--CCCceEEEeeeeeeccHHHHH
Q 009127 105 PIPPGKNFTYVLQAKDQIGSYFYFPSFL----FHKAAGAFGGIRIWSRPRIPVPFPP--PAGDFTVLAGDWYRSNHYVLR 178 (543)
Q Consensus 105 ~i~PG~~~~y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~ 178 (543)
+|+||++|+|+|++.+++||||||||.. .|+++||+|+|||+++.+.+.+++. .++|++|+|+||+++...++.
T Consensus 111 ~i~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~lp~~~~~~d~~l~l~d~~~~~~g~~~ 190 (534)
T 3abg_A 111 ITEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLPSGYGEFDIPMILTSKQYTANGNLV 190 (534)
T ss_dssp CBSSCSCCCEEECCCSSSCEEEEEECCTTCHHHHHHTBCEEEEEEECTTTTTSCTTCCHHHHSCCEEEEEECBCSSSCBC
T ss_pred CCCCCCeEEEEEecCCcceeEEEecCccccchhhhhhcceEEEEEECCcccccCCCccCCcceEEEEEeeeeecCCCcee
Confidence 9999999999999975689999999974 5899999999999998765444432 267899999999987543321
Q ss_pred HHhccC-CCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeC-------CeeEEEEEcCcc-ccccc
Q 009127 179 RLLDSG-HNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQG-------HSMKLVEVEGSH-TLQNT 249 (543)
Q Consensus 179 ~~~~~g-~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g-------~~~~via~DG~~-~~p~~ 249 (543)
. ..+ .....+|.++|||+. .|.++|++ ++|||||||+|+.+.+.|+|++ |+|+||++||++ .+|+.
T Consensus 191 ~--~~~~~~~~~gd~~lvNG~~--~p~~~v~~-~~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~vIa~DG~~~~~P~~ 265 (534)
T 3abg_A 191 T--TNGELNSFWGDVIHVNGQP--WPFKNVEP-RKYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPAD 265 (534)
T ss_dssp C--CTTCSSCCCCSEEEETTEE--SCBCBCCS-SEEEEEEEECCSSCCEEEEECCSSSTTCCCCEEEEEETTEEEEEEEE
T ss_pred c--cCCCCccccCceeccCCcc--CceEEecC-cEEEEEEEecCCcceEEEEEecccCcCCCccEEEEEeCCCcccCceE
Confidence 0 111 123457999999999 89999998 5999999999999999999987 999999999985 58999
Q ss_pred cCeEEEcCCCeEEEEEEeCCCCc-ceEEEEeecc----C--CCccceEEEEEecCCCCCCCCCCCCCCCCcccccccccc
Q 009127 250 YAALDIHLGQTYSVLVTMDQAPQ-DYYIVVSSRF----T--PRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQAR 322 (543)
Q Consensus 250 ~~~v~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~----~--~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 322 (543)
++++.|+|||||||+|++++.+| +|+|++.... . .......++++|..+..+.. +. + .
T Consensus 266 ~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~---~~-~------~----- 330 (534)
T 3abg_A 266 TSLLYISMAERYEVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQ---PD-T------S----- 330 (534)
T ss_dssp ESCEEECTTCEEEEEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSC---SC-C------C-----
T ss_pred eceEEECCccEEEEEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcC---CC-C------C-----
Confidence 99999999999999999997667 6999874311 0 11123457888875542100 00 0 0
Q ss_pred ccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCC
Q 009127 323 SIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSP 402 (543)
Q Consensus 323 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p 402 (543)
.++..+.+.. .+.+ ....++++.+... ...|+|||++|.++..|++
T Consensus 331 ~~P~~L~~~~-~p~~-------~~~~~~~~~~~~~------~~~w~iNG~~f~~~~~p~l-------------------- 376 (534)
T 3abg_A 331 VVPANLRDVP-FPSP-------TTNTPRQFRFGRT------GPTWTINGVAFADVQNRLL-------------------- 376 (534)
T ss_dssp CCCCCCCCCS-CCCC-------CCCCCEEEECSCC------CSTTCCCCBTTBCTTSCCC--------------------
T ss_pred CCccccccCC-CCCC-------ccccceEEEEecc------CceeEECCcccCCCCCcce--------------------
Confidence 0001111110 0111 1134566665431 1259999999965444332
Q ss_pred CCCCCccceeEEecCCCcEEEEEEEeCCC-CCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEE
Q 009127 403 NWGNAYLQTSVMAANFREFVEIVFQNWED-TVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTA 481 (543)
Q Consensus 403 ~~~~~~~~~~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~ 481 (543)
+.++.|++++|+|+|.+. +.||||||||+||||+++.|.+.. ..+++.+ .|||||.|+++++++
T Consensus 377 -----------~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g~~~~---~~~~~~~-~~rDTV~v~pg~~v~ 441 (534)
T 3abg_A 377 -----------ANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNAR---TVMPYES-GLKDVVWLGRRETVV 441 (534)
T ss_dssp -----------CEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSCCSSS---CCCSGGG-SCBSEECCCSSEEEE
T ss_pred -----------eeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCCCCcC---cCCcccc-CCcCeEEcCCCCEEE
Confidence 235789999999999874 599999999999999996553321 1234455 899999999999999
Q ss_pred EEEE-ecCcccceeeecchhhhhcccEEEEEEecCC
Q 009127 482 IYMA-LDNVGMWNIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 482 irf~-adnpG~w~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
|||+ +||||.|||||||++|+|.|||+.|+|...+
T Consensus 442 I~~~~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 477 (534)
T 3abg_A 442 VEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLP 477 (534)
T ss_dssp EEEECCSCCEEEEEEESCHHHHHTTCEEEEEECSSC
T ss_pred EEEEECCCCccEEEecChHHHHhcCCceEEEEEecc
Confidence 9999 8999999999999999999999999998655
No 12
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=100.00 E-value=8.3e-83 Score=674.73 Aligned_cols=403 Identities=21% Similarity=0.221 Sum_probs=314.7
Q ss_pred cCCCeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCC
Q 009127 24 GDSPYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGT 102 (543)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~t 102 (543)
+.+++++|+|++++..+.. +|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++. +++||++
T Consensus 46 ~~~~~~~~~L~~~~~~~~~~~G~~~~~~~~NG~~PGPtIr~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DG~p-- 121 (481)
T 3zx1_A 46 KEKNIFHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVP--PDQDGSP-- 121 (481)
T ss_dssp CSTTEEEEEEEEEEEEECCSTTCCEEEEEETTBSSCCBEEEETTCEEEEEEEECSSSCBCCEEETCCCC--GGGSCCT--
T ss_pred cCCCeEEEEEEEEEEEEEccCCcEEEEEEECCCCCCceEEEECCcEEEEEEEeCCCCCeeEEecCcccC--CccCCCc--
Confidence 5567899999999999985 7999999999999999999999999999999999999999999999874 6799998
Q ss_pred CCcCCCCCeEEEEEEeCCC-cccceecCCc----hhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHH
Q 009127 103 TCPIPPGKNFTYVLQAKDQ-IGSYFYFPSF----LFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVL 177 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~~-~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~ 177 (543)
||+|+||++|+|+|+++++ +||||||||. +.|+.+||+|+|||+++++.+.++ +.++ |+++||+++...++
T Consensus 122 q~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~~q~~~GL~G~lIV~~~~~~~~~~---~~~~-l~l~D~~~~~~g~~ 197 (481)
T 3zx1_A 122 HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHL---KEKD-LMISDLRLDENAQI 197 (481)
T ss_dssp TSCBCTTCEEEEEEECCTTCCEEEEEECCCTTTHHHHHHTTCCEEEEEECSSCTTTTS---EEEE-EEEEEECCBTTSCC
T ss_pred cCcCCCCCeEEEEEeCCCCCCceEEEeecCCCcchhhhhccceEEEEEcCccccccCC---Ccee-EEEEEEeccCCCcc
Confidence 8999999999999999643 7999999995 689999999999999977543322 4454 99999998754332
Q ss_pred H-----HHhccCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc-cccccC
Q 009127 178 R-----RLLDSGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT-LQNTYA 251 (543)
Q Consensus 178 ~-----~~~~~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~-~p~~~~ 251 (543)
. ..+ . ...++.++|||+. .|.++|++|+ ||||||+|+.+.+.|+|+||+|+||++||+++ +|+.++
T Consensus 198 ~~~~~~~~~-~---g~~gd~~lvNG~~--~p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~vIa~DGg~~~~P~~~~ 269 (481)
T 3zx1_A 198 PNNNLNDWL-N---GREGEFVLINGQF--KPKIKLATNE--RIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKE 269 (481)
T ss_dssp CCCCHHHHH-H---CCCCSEEEETTEE--SCEEEEETTE--EEEEEECCSSCCEEEEETTCEEEEEEETTEEEEEEEEES
T ss_pred ccccchhhc-c---CCcCCEEEECCcc--CceEEecCCC--EEEEEecCCCeEEEEEECCCceEEEEcCCCccCCceEeC
Confidence 1 111 1 2357899999999 8999999998 99999999999999999999999999998765 799999
Q ss_pred eEEEcCCCeEEEEEEeCCCCcceEEEEeeccCC-----CccceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccc
Q 009127 252 ALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTP-----RVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRW 326 (543)
Q Consensus 252 ~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~-----~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 326 (543)
++.|+|||||||+|+++ .++.|.+.+...... .......++++..... ..++|.
T Consensus 270 ~l~l~pgeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~lP~------------------ 328 (481)
T 3zx1_A 270 ELFLSPASRVEVLIDAP-KDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKE--NVELPK------------------ 328 (481)
T ss_dssp SEEECTTCEEEEEEECS-SCEEEEEEECCCCCCCSSCCCCCCCEEEEEEEEECC--CCCCCS------------------
T ss_pred eEEECCccEEEEEEEcC-CCcEEEEEEecccccCccccCCCCceeEEEEecCCC--CccCCc------------------
Confidence 99999999999999999 578899887543210 0111222333322110 011111
Q ss_pred ccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcC-----Ce--------EEEEEcCeeecCCCCchhhhcccCCCccc
Q 009127 327 NLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMN-----GK--------QRYAINSVSFVPADTPLKLADYFKIPGVF 393 (543)
Q Consensus 327 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----g~--------~~~~iNg~~f~~~~~p~~~~~~~~~~~~~ 393 (543)
.+.+.+..+. ...++++.+........ +. ..|+|||+.|.. +.|
T Consensus 329 ~l~~~~~~~~---------~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-~~~------------- 385 (481)
T 3zx1_A 329 NLKIFKPSEE---------PKEFKEIIMSEDHMQMHGMMGKSEGELKIALASMFLINRKSYDL-KRI------------- 385 (481)
T ss_dssp CSCCCCCCCC---------CCEEEEEEEEECCSTTTTGGGCCHHHHHHHHHTTEEETTBCCCT-TCC-------------
T ss_pred cccCCCCCCC---------CCcEEEEEEeccchhcccccccccccccccccceeEECCEeCCC-CCc-------------
Confidence 0111111111 12456666643211000 01 139999998842 111
Q ss_pred ccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEee--cCCCCCCCCCCCCCCCCCCccee
Q 009127 394 TLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGM--DGGQWTPASRTRYNLRDTVARST 471 (543)
Q Consensus 394 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~--~~g~~~~~~~~~~~~~~p~~rDT 471 (543)
.+.++.|++|+|+|.|.+.+.||||||||+|||+++ ++... ...++.||||
T Consensus 386 -------------------~~~~~~G~~v~w~l~N~~~~~Hp~HlHG~~F~vl~~~~~g~~~--------~~~~~~~kDT 438 (481)
T 3zx1_A 386 -------------------DLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQ--------KAEFRALRDT 438 (481)
T ss_dssp -------------------CEEEETTCCEEEEEEECSSSCEEEEETTCCEEEEEEEETTEEE--------ECSSCCEESE
T ss_pred -------------------eEEeCCCCEEEEEEEcCCCCceeEEEeccEEEEEEecccCCCC--------CcccCcccce
Confidence 145788999999999999999999999999999998 43221 1234789999
Q ss_pred EEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEe
Q 009127 472 TQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 472 v~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.|+|+++++|+|+|||||.|||||||++|+|.|||..|+|.
T Consensus 439 v~v~Pg~~~~i~~~~d~pG~w~~HCHil~H~d~GMm~~~~V~ 480 (481)
T 3zx1_A 439 INVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVK 480 (481)
T ss_dssp EEECTTCEEEEEECCCSCEEEEEEESSHHHHHTTCEEEEEEE
T ss_pred EEECCCCEEEEEEEcCCCeeEEEEcCChHHHhcCCceEEEEe
Confidence 999999999999999999999999999999999999999996
No 13
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=100.00 E-value=5.1e-82 Score=679.54 Aligned_cols=427 Identities=15% Similarity=0.141 Sum_probs=319.9
Q ss_pred CeEEEEEEEEEEEec--CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCC----------------------Cce
Q 009127 27 PYRFFTWKITYGDIY--PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLRE----------------------PFL 82 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~--~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~----------------------~~~ 82 (543)
....|+|++++.... +++..+.+|+|||++|||+|||++||+|+|+|+|+|++ +|+
T Consensus 24 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~L~~~~~~~~~~t~~~~~~~~~~~~~~ts 103 (513)
T 2wsd_A 24 EKTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTV 103 (513)
T ss_dssp SCEEEEEEEEEEEECSSTTSCCEEEEEETTBSSCCBEEEETTCCEEEEEEECCCSSCSSCCCTTSCC-----CCCSCCBC
T ss_pred CceEEEEEEEEeeeeeCCCCCCceEEEECCCccCceEEECCCCEEEEEEEeCCCccccCccccccccccccccCCCCCcE
Confidence 345699999998864 45578999999999999999999999999999999985 899
Q ss_pred eecCcccCCCCCCCCCCCC---CCCcCCCCCeE---EEEEEeCCCcccceecCCch----hhhhccceeEEEEecCCCCC
Q 009127 83 ISWNGLQQRRNSWQDGVYG---TTCPIPPGKNF---TYVLQAKDQIGSYFYFPSFL----FHKAAGAFGGIRIWSRPRIP 152 (543)
Q Consensus 83 iH~HG~~~~~~~~~DG~p~---tq~~i~PG~~~---~y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~ 152 (543)
|||||+++. +++||+++ +||+|+||++| +|+|++.+++||||||||.. .|+++||+|+|||+++.+.+
T Consensus 104 iHwHGl~~~--~~~DG~p~~~i~~g~i~pG~~f~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~ 181 (513)
T 2wsd_A 104 VHLHGGVTP--DDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKR 181 (513)
T ss_dssp EEEETCCCC--GGGSCCTTSCBCGGGSSBCTTCCCSEEEECCCSCCEEEEEEECCTTTHHHHHHHTCEEEEEEECGGGGG
T ss_pred EEcCCCcCC--CccCCCCcccccCCcccCCCccceEEEEEecCCCccceEECCCCCCcchhhhhccCeEEEEEecccccc
Confidence 999999876 57999994 78999999555 99999866799999999974 58999999999999976544
Q ss_pred CCCCCCCCceEEEeeeeeeccHHHHHHHhc-----------cCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcC
Q 009127 153 VPFPPPAGDFTVLAGDWYRSNHYVLRRLLD-----------SGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVG 221 (543)
Q Consensus 153 ~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~-----------~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~ 221 (543)
.+++.+++|++|+|+||+++...++..... .......+++++|||+. .|.++|++| +|||||||+|
T Consensus 182 ~~lp~~d~d~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~--~p~~~v~~~-~~RlRliNa~ 258 (513)
T 2wsd_A 182 LKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKV--WPYLEVEPR-KYRFRVINAS 258 (513)
T ss_dssp GCCCCGGGEEEEEEEEEEECTTSCEECCSSCSSCCTTSCSSCCCSCCCCSEEEETTEE--SCEEECCSS-EEEEEEEECC
T ss_pred ccCCCCCCcEEEEEEeeecCCCCceecccccccccccccccccccccccceEEECCcc--cceEEecCC-EEEEEEEccC
Confidence 444456899999999999876533210000 00123467999999999 899999985 8999999999
Q ss_pred CcceEEEEEeCC-eeEEEEEcCccc-cccccCeEEEcCCCeEEEEEEeCCCCcceE-EEEeecc-CC-CccceEEEEEec
Q 009127 222 LTTSINFRIQGH-SMKLVEVEGSHT-LQNTYAALDIHLGQTYSVLVTMDQAPQDYY-IVVSSRF-TP-RVLTTTAILHYS 296 (543)
Q Consensus 222 ~~~~~~~~i~g~-~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~-i~~~~~~-~~-~~~~~~~il~y~ 296 (543)
+.+.+.|+|+|| +|+||++||+++ +|+.++++.|+|||||||+|++++.+|++. +...... .. ......++++|.
T Consensus 259 ~~~~~~~~i~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~il~~~ 338 (513)
T 2wsd_A 259 NTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFR 338 (513)
T ss_dssp SSCCEEEEETTCCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECGGGTTCEEEEEECCCSSSSCCTTTTTEEEEEE
T ss_pred CcceEEEEECCCCeEEEEccCCCcccCceEeCeEEECCeeeEEEEEECCCCCCcEEEEEecccccccCCCCCCcceEEEE
Confidence 999999999999 999999999998 799999999999999999999997677643 3332211 01 112345788887
Q ss_pred CCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecC
Q 009127 297 NSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVP 376 (543)
Q Consensus 297 ~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~ 376 (543)
.+...........|. .+ ......+. .....++++.+.... ...+...|.|||++|..
T Consensus 339 ~~~~~~~~~~~~~p~-----~l----------~~~~~~~~-------~~~~~~~~~~l~~~~-~~~g~~~~~iNg~~~~~ 395 (513)
T 2wsd_A 339 VTKPLAQKDESRKPK-----YL----------ASYPSVQH-------ERIQNIRTLKLAGTQ-DEYGRPVLLLNNKRWHD 395 (513)
T ss_dssp CCSCCSSCCCCCCCS-----BC----------SCCGGGCC-------CCEEEEEEEEEEEEE-CTTSCEEEEETTBCTTS
T ss_pred eccCcccCccCCCCc-----cc----------cCCCCccc-------CCCcceEEEEEEeec-CCCCCceEeECCccCCC
Confidence 653111000000110 01 00000000 012345666665422 12345578999998843
Q ss_pred CCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCC---CC
Q 009127 377 ADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGG---QW 453 (543)
Q Consensus 377 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g---~~ 453 (543)
+. .+.++.|++++|+|+|.+.+.||||||||+||||+++++ .|
T Consensus 396 ~~----------------------------------~~~~~~g~~~~w~l~N~~~~~HP~HlHG~~F~Vl~~~~~~~~~~ 441 (513)
T 2wsd_A 396 PV----------------------------------TETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARY 441 (513)
T ss_dssp CC----------------------------------CBCCBTTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEBCHHHH
T ss_pred cc----------------------------------cEecCCCCEEEEEEEcCCCCCcCEeEeCceEEEEEecCcccccc
Confidence 21 023568999999999998899999999999999998752 11
Q ss_pred CCCC------C-CCCCCCCCCcceeEEeCCCCEEEEEEEe-cCcccceeeecchhhhhcccEEEEEEecC
Q 009127 454 TPAS------R-TRYNLRDTVARSTTQVYPRSWTAIYMAL-DNVGMWNIRSENWARQYLGQQFYLRVYSP 515 (543)
Q Consensus 454 ~~~~------~-~~~~~~~p~~rDTv~vp~~g~v~irf~a-dnpG~w~~HCHil~Hed~GMm~~~~V~~p 515 (543)
++.. + ......++.|||||.|+++++++|+|++ ||||.|||||||++|+|.|||+.|+|..+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnpG~w~~HCHil~H~~~GMm~~~~V~~~ 511 (513)
T 2wsd_A 442 QESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHALEHEDYDMMRPMDITDP 511 (513)
T ss_dssp HHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCCEEEEEEESCHHHHTTTCEEEEEEBCC
T ss_pred cccccccccCCCCCCCccccCcccEEEeCCCCEEEEEEEecCCCCCEEEEcCChhhhhcCCceeEEEeCC
Confidence 1100 0 0011223569999999999999999999 89999999999999999999999999754
No 14
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=100.00 E-value=6.3e-81 Score=689.26 Aligned_cols=441 Identities=14% Similarity=0.101 Sum_probs=308.0
Q ss_pred CCeEEEEEEEEEEEe--cCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCC-----------------------
Q 009127 26 SPYRFFTWKITYGDI--YPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREP----------------------- 80 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~--~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~----------------------- 80 (543)
...+.|+|++.+... .+++..+++|+|||++|||+|+|++||+|+|+|+|+|+++
T Consensus 30 ~~~~~~~i~~~~~~~~~~~~~~~t~~~gyNg~~PGPti~~~~Gd~v~v~~~N~L~~~~~~h~hg~~~~~~~~~~~~~~~~ 109 (612)
T 3gyr_A 30 EVTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTE 109 (612)
T ss_dssp CTTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGS
T ss_pred CCcceEEEEEEEEEEeecCCCCcceEEEECCcccCcEEEEeCCcEEEEEEEECCCCCcccccccccccCCCCCCcccccc
Confidence 345778999988776 4566788999999999999999999999999999999754
Q ss_pred ------------------ceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCc----hhhhhcc
Q 009127 81 ------------------FLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSF----LFHKAAG 138 (543)
Q Consensus 81 ------------------~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~G 138 (543)
|+|||||+++. +.+||++ ||+|.||++|+|+|++.+++||||||||. +.|+++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~ttiHwHGl~~~--~~~DGv~--q~~I~PG~~~~Y~f~~~q~~GT~WYHsH~~g~t~~q~~~G 185 (612)
T 3gyr_A 110 PGRGGVEPNKDVAALPAWSVTHLHGAQTG--GGNDGWA--DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAG 185 (612)
T ss_dssp CSCTTCCCCHHHHTCCCCBCEEEETCCCC--TTTSCCG--GGCBCTTCEEEEEECCCSCSEEEEEEECCTTTHHHHTTTT
T ss_pred ccccccccccccccCCCCceEEcCCCccC--CcccCcc--cCccCCCCCEEEEEEcCCCCceEEEeeCCCCcchhhhhcc
Confidence 67899999874 5799998 99999999999999997668999999995 6899999
Q ss_pred ceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHH--h-------c-----c---CCCCCCCCeEEEcCCCCC
Q 009127 139 AFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRL--L-------D-----S---GHNLPFPDGLLINGRGWN 201 (543)
Q Consensus 139 l~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~--~-------~-----~---g~~~~~~~~~liNG~~~~ 201 (543)
|+|+|||+++.+...+++.+++|++|+|+||+++........ + . . ......++.++|||+.
T Consensus 186 l~G~liI~d~~~~~~~~p~~d~e~~lvl~Dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~vNG~~-- 263 (612)
T 3gyr_A 186 LYGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRI-- 263 (612)
T ss_dssp CEEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEE--
T ss_pred ceeEEEEcCccccccCCCCCCccEEEEEEEEecccccccccccccccCCccccccCCCCCCccccCccCceeeecCCc--
Confidence 999999998776555555779999999999988754322100 0 0 0 0112356899999999
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCC-------eeEEEEEcCcccc-c------cccCeEEEcCCCeEEEEEEe
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGH-------SMKLVEVEGSHTL-Q------NTYAALDIHLGQTYSVLVTM 267 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~-------~~~via~DG~~~~-p------~~~~~v~l~pgeR~dv~v~~ 267 (543)
.|.+.++. ++|||||||+|+.+.+.|+|++| +|+|||+||++++ | ..+++|.|+|||||||+|++
T Consensus 264 ~p~~~v~~-~~yRlRliNas~~~~~~l~i~~h~~~~~~~~~~vIa~DG~~l~~Pv~v~~p~~~~~l~i~pGeRydVlV~~ 342 (612)
T 3gyr_A 264 WPYADVDD-GWYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDF 342 (612)
T ss_dssp SCEEEEES-SEEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEEC
T ss_pred cceEeccC-cEEEEEEEeccCCcceeEEEccCCCccCCceEEEEEeCCCccccceeccCcccccEEEeccceEEEEEEEC
Confidence 89999986 58999999999999999999998 4999999999873 4 45678999999999999999
Q ss_pred CCCCcceEEEEeeccCC--------CccceEEEEEecCCCCCC--CCCCCCCCCCccc---cccccccccccccCCCCCC
Q 009127 268 DQAPQDYYIVVSSRFTP--------RVLTTTAILHYSNSRRGV--SGPIPGGPTTEIA---WSLNQARSIRWNLTASGPR 334 (543)
Q Consensus 268 ~~~~g~y~i~~~~~~~~--------~~~~~~~il~y~~~~~~~--~~~~p~~p~~~~~---~~~~~~~~~~~~l~~~~~~ 334 (543)
++.+|.++......... .......+++|....... ...+|........ .......... .+......
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 421 (612)
T 3gyr_A 343 RALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGHRLI-VLTPPGTK 421 (612)
T ss_dssp TTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCEEEEE-EEECTTCT
T ss_pred CCCCceEEEEEecCCcCCcCccCccccccccceeeecccCCCCCCcccccccccccccccccccccccccc-cccccccc
Confidence 98777665544322111 012234455554332111 1111110000000 0000000000 00000000
Q ss_pred CCCCCCCCcccccceEEEEEeccC----------------CCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCC
Q 009127 335 PNPQGSYHYGMIKISRTITLANSA----------------PYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSM 398 (543)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~~~~~~~----------------~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~ 398 (543)
. . ........+.... ........|.+|++.|
T Consensus 422 -~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~------------------------ 468 (612)
T 3gyr_A 422 -G-S-------GGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTARTF------------------------ 468 (612)
T ss_dssp -T-T-------TTCCEEEEEEECC-----CCSCTTEEEEECTTSCEEEEEEEECST------------------------
T ss_pred -c-c-------cccccccccccccccccccccccceeeeccCCCccccccccCccC------------------------
Confidence 0 0 0000000000000 0000011122222221
Q ss_pred CCCCCCCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCC----------------CCCCC
Q 009127 399 PTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPAS----------------RTRYN 462 (543)
Q Consensus 399 ~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~----------------~~~~~ 462 (543)
.....+.++.|++|+|+|+|.+.+.||||||||+||||+++++.+.... ....+
T Consensus 469 ----------~~~~~~~~~~g~~~~w~i~N~~~~~HP~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (612)
T 3gyr_A 469 ----------NDGLGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLA 538 (612)
T ss_dssp ----------TSCCCEEEETTCEEEEEEEECSSSCEEEEESSCEEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCC
T ss_pred ----------CCCcceEeCCCCEEEEEEEcCCCCCcCEeECCCcEEEEeecCCcCccccccccccccccccccccccCcc
Confidence 1123356789999999999999999999999999999998754332211 11245
Q ss_pred CCCCCcceeEEeCCCCEEEEEEE-ecCcccceeeecchhhhhcccEEEEEEecCCC
Q 009127 463 LRDTVARSTTQVYPRSWTAIYMA-LDNVGMWNIRSENWARQYLGQQFYLRVYSPAN 517 (543)
Q Consensus 463 ~~~p~~rDTv~vp~~g~v~irf~-adnpG~w~~HCHil~Hed~GMm~~~~V~~p~~ 517 (543)
..++.|||||.|+++++++|||+ +||||.||||||||+|||.|||+.|+|.+|+.
T Consensus 539 ~~~~~~kDTv~v~~~~~v~i~~rfadnpG~w~~HCHil~Hed~GMM~~f~V~~p~~ 594 (612)
T 3gyr_A 539 PNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPEA 594 (612)
T ss_dssp TTCSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHHTTCEEEEEEECHHH
T ss_pred cccCCCCcEEEECCCCEEEEEEEeCCCCcceEEcCCChHHHhCcCCcceEEeCCcc
Confidence 56788999999999999999999 69999999999999999999999999998763
No 15
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=100.00 E-value=1.2e-81 Score=664.58 Aligned_cols=381 Identities=17% Similarity=0.213 Sum_probs=298.7
Q ss_pred EEECCc-CCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceec
Q 009127 50 ILINGQ-FPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYF 128 (543)
Q Consensus 50 ~~~Ng~-~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH 128 (543)
|+|||+ +|||+|||++||+|+|+|+|+|+++++|||||+++. +++||+++ |+|.||++|+|+|++++++||||||
T Consensus 28 ~~~Ng~~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~~~--~~i~PG~~~~Y~f~~~~~~GT~wYH 103 (448)
T 3aw5_A 28 SGYMAEGVLNPTIILRRGQRVDMTLKNKLTEPTIVHWHGFDVN--WHNDAHPS--FAITPGESYNYSFDVVNRAGTYLYH 103 (448)
T ss_dssp TEEEETTEESCEEEEETTCEEEEEEEECSSSCBCEEEETCCCC--HHHHTCGG--GCBCTTCEEEEEEECCSCSEEEEEE
T ss_pred EEECCccccCceEEEeCCCEEEEEEEECCCCceeEEeCCccCC--CccCCCCC--ccCCCCCEEEEEEEcCCCCCceEec
Confidence 999999 999999999999999999999999999999999875 56999996 9999999999999997579999999
Q ss_pred CC----chhhhhccceeEEEEecCCCCCCCCCCCC-CceEEEeeeeeeccHHHHHHH--hccCCCCCCCCeEEEcCCCCC
Q 009127 129 PS----FLFHKAAGAFGGIRIWSRPRIPVPFPPPA-GDFTVLAGDWYRSNHYVLRRL--LDSGHNLPFPDGLLINGRGWN 201 (543)
Q Consensus 129 ~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~~~--~~~g~~~~~~~~~liNG~~~~ 201 (543)
|| ++.|+.+||+|+|||+++++. .+++ ++ +|++|+++||+++. .++... .........++.++|||+.
T Consensus 104 ~H~~~~~~~q~~~Gl~G~liV~~~~~~-~~l~-~d~~e~~l~l~D~~~~~-~~~~~~~~~~~~~~~~~~~~~liNG~~-- 178 (448)
T 3aw5_A 104 PHPHGLTAKQFYMGQLGLVIVEDSGSD-LGFK-YGVNDLPLVISDRRFIG-GAPVYNPTPMEMIAGFLGNAVLVNGVK-- 178 (448)
T ss_dssp ECCTTTHHHHHHTTCCEEEEEECTTTT-TTCC-BTTTEEEEEEEEEEEET-TEEECCCCHHHHHHCCCCSEEEETTEE--
T ss_pred cCCCCchHHHHhccceEEEEEeCCccc-cCCC-CCCceEEEEEEeeccCC-CcccccccccccccCccccEEEECCcc--
Confidence 99 789999999999999997653 2222 35 89999999999976 332110 0000112467999999999
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEE--eC---CeeEEEEEcCcccc-ccccCeEEEcCCCeEEEEEEeCCCCcceE
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRI--QG---HSMKLVEVEGSHTL-QNTYAALDIHLGQTYSVLVTMDQAPQDYY 275 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i--~g---~~~~via~DG~~~~-p~~~~~v~l~pgeR~dv~v~~~~~~g~y~ 275 (543)
.|.++|++| +|||||||+|+.+.+.|+| +| |+|+||++||++++ |..++++.|+|||||||+|+++ .+.|+
T Consensus 179 ~p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~--~~~y~ 255 (448)
T 3aw5_A 179 DAVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELG--EGVYL 255 (448)
T ss_dssp TCEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEECEEEEEETTEEEEEEEEESCEEECTTCEEEEEEEEC--SEEEE
T ss_pred cceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCccEEEEEeCCCccCCceEeceEEECCcceEEEEEECC--CCceE
Confidence 899999999 9999999999999999999 99 99999999999998 9999999999999999999998 36899
Q ss_pred EEEeeccC--------------CCccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 009127 276 IVVSSRFT--------------PRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSY 341 (543)
Q Consensus 276 i~~~~~~~--------------~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~ 341 (543)
|++..... .......++++|.+...... |. .+. ..+..+.
T Consensus 256 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~-----~L~----------~lp~~~~----- 309 (448)
T 3aw5_A 256 LKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAVP------VE-----ALS----------DPPPEPP----- 309 (448)
T ss_dssp EEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECCCCC------CC-----CCS----------CCCCCCC-----
T ss_pred EEccccccccCccccccccccCCCCCceEEEEEEcCCCCCCC------cc-----ccC----------CCCCCCC-----
Confidence 99865321 01124567778865432110 10 110 0000010
Q ss_pred CcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEe-cCCCc
Q 009127 342 HYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMA-ANFRE 420 (543)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~g~ 420 (543)
....++++.+... ...|+|||++|..+ .|. +. ++.|+
T Consensus 310 ---~~~~~~~~~l~~~------~~~~~iNg~~~~~~-~p~--------------------------------~~~~~~g~ 347 (448)
T 3aw5_A 310 ---KPTRTRRFALSLS------GMQWTINGMFWNAS-NPL--------------------------------FEHVSVEG 347 (448)
T ss_dssp ---CCSEEEEEEEEEE------TTEEEETTBCCCTT-CTT--------------------------------CCCEEECE
T ss_pred ---CCCceEEEEEeCC------CceeeECCCcCCCC-CCc--------------------------------eeccCCCC
Confidence 1235677766531 12599999998531 111 22 46799
Q ss_pred EEEEEEEeCC-CCCCCeeecCCCeEEEeecCCCCC-CCCCCCC----CCCCCCcceeEEeCCCCEEEEE--EE---ecCc
Q 009127 421 FVEIVFQNWE-DTVQSYHIDGYSFFVVGMDGGQWT-PASRTRY----NLRDTVARSTTQVYPRSWTAIY--MA---LDNV 489 (543)
Q Consensus 421 ~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~-~~~~~~~----~~~~p~~rDTv~vp~~g~v~ir--f~---adnp 489 (543)
+++|+|+|.+ .+.||||||||+||||++++ .+. ..+...+ +..++.|||||.|+++++++|+ |+ +|||
T Consensus 348 ~v~~~i~N~~~~~~HP~HLHG~~F~Vl~~~G-~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~adnp 426 (448)
T 3aw5_A 348 VELWEIVNDKASMPHPMHLHGFPMWIIERKD-SPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQL 426 (448)
T ss_dssp EEEEEEEECSSSCCEEEEESSSCBEEEEEES-CCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTTCE
T ss_pred eEEEEEEcCCCCCCcCEEECCceEEEEEecC-CCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCCCc
Confidence 9999999998 88999999999999999963 332 0111122 2334579999999999999766 88 8999
Q ss_pred ccceeeecchhhhhcccEEEEEEe
Q 009127 490 GMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 490 G~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|||||||++|||.|||..|+|.
T Consensus 427 --w~~HCHil~H~d~GMm~~~~V~ 448 (448)
T 3aw5_A 427 --FPFHCHNLEHEDGGMMINIAVK 448 (448)
T ss_dssp --EEEEESSHHHHHTTCEEEEEEC
T ss_pred --EEEEcCChHHHhCCCceEEEeC
Confidence 9999999999999999999984
No 16
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=100.00 E-value=2.3e-80 Score=655.67 Aligned_cols=412 Identities=19% Similarity=0.230 Sum_probs=308.4
Q ss_pred CCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCc
Q 009127 26 SPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCP 105 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~ 105 (543)
...+.|+|++++..++++|+++.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++.+ .+||++ ||+
T Consensus 15 ~~~~~~~l~~~~~~~~~~G~~~~~~~~NG~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~--~~DG~p--~~~ 90 (488)
T 3od3_A 15 DARNRIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPG--EVDGGP--QGI 90 (488)
T ss_dssp CTTSEEEEEEEEEEEEETTEEEEEEEESSSSBCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCCH--HHHCCT--TCC
T ss_pred CCCeeEEEEEEEEEEccCCeEEEEEEECCcCCCCeEEEeCCeEEEEEEEeCCcCceeEeecccccCc--ccCCCC--cCc
Confidence 3457899999999998899999999999999999999999999999999999999999999998764 699998 899
Q ss_pred CCCCCeEEEEEEeCCCcccceecCCc----hhhhhccceeEEEEecCCCCCCCCCC--CCCceEEEeeeeeeccHHHHHH
Q 009127 106 IPPGKNFTYVLQAKDQIGSYFYFPSF----LFHKAAGAFGGIRIWSRPRIPVPFPP--PAGDFTVLAGDWYRSNHYVLRR 179 (543)
Q Consensus 106 i~PG~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 179 (543)
|.||++++|+|++.+++||||||||. +.|+++||+|+|||+++.+...+++. ..+|++|+++||+++...++..
T Consensus 91 i~PG~~~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~~~~~~lp~~y~~~d~~lvl~D~~~~~~g~~~~ 170 (488)
T 3od3_A 91 IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDY 170 (488)
T ss_dssp BCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTCCEEEEEECHHHHTTCCCCCBTTTEEEEEEEEECBCTTSSBCC
T ss_pred CcCCCeEEEEEecCCCceeEEEEecCCCcchhhhhccceeEEEEcCccccccCCcccCCccceeEEEEEeeecCCCceec
Confidence 99999999999996558999999996 68999999999999997653333322 3469999999999975432210
Q ss_pred Hh--ccCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEE-eCCeeEEEEEcCccc-cccccCeEEE
Q 009127 180 LL--DSGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRI-QGHSMKLVEVEGSHT-LQNTYAALDI 255 (543)
Q Consensus 180 ~~--~~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i-~g~~~~via~DG~~~-~p~~~~~v~l 255 (543)
.. ........++.++|||+. .|.+.+ +|++|||||||+|+.+.+.|+| +||+|+||++||+++ +|+.++++.|
T Consensus 171 ~~~~~~~~~g~~gd~~lvNG~~--~p~~~v-~g~~~RlRliNas~~~~~~l~i~dg~~~~vIa~DG~~l~~P~~~~~l~l 247 (488)
T 3od3_A 171 QLDVMTAAVGWFGDTLLTNGAI--YPQHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPV 247 (488)
T ss_dssp CCSHHHHHHCCCCSEEEETTBS--SCEEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEEEEEETTEEEEEEEEESCEEE
T ss_pred cccccccccCCCCCEEEEcCCc--CccEec-CCCEEEEEEEccCCCceeeeeecCCCeEEEEEeCCCcccCccEeceEEE
Confidence 00 000012357899999999 788887 5689999999999999999999 699999999999986 8999999999
Q ss_pred cCCCeEEEEEEeCCCCcceEEEEeeccCCC-----ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCC
Q 009127 256 HLGQTYSVLVTMDQAPQDYYIVVSSRFTPR-----VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTA 330 (543)
Q Consensus 256 ~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~-----~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~ 330 (543)
+|||||||+|+++ .++.|.+++....... ......+++......+....+|. .|..
T Consensus 248 ~pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~------------------~L~~ 308 (488)
T 3od3_A 248 LMGERFEVLVEVN-DNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPD------------------TLSS 308 (488)
T ss_dssp CTTCEEEEEEEEC-TTCCEEEEECCCSSTTTTSTTTTSCEEEEEEEEEEEECCCCCCS------------------CCCC
T ss_pred CCCCEEEEEEEeC-CCceEEEEEeccCCCCcccccccCccceeEecccccCCCCCCCc------------------cccc
Confidence 9999999999999 4778999875432110 01111222222110000001111 0111
Q ss_pred CCCCCCCCCCCCcccccceEEEEEeccC-------------------CCc----------CCe-------------EEEE
Q 009127 331 SGPRPNPQGSYHYGMIKISRTITLANSA-------------------PYM----------NGK-------------QRYA 368 (543)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------------~~~----------~g~-------------~~~~ 368 (543)
.+..+.. ....+|++.+.... ... .|. ..|.
T Consensus 309 ~~~~~~~-------~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 381 (488)
T 3od3_A 309 LPALPSL-------EGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANK 381 (488)
T ss_dssp CCCCCCC-------TTCCEEEEEEEECHHHHHHHHHHHHHHHGGGGGTTSCHHHHCCCSCCCCCCCSCCCGGGCGGGCEE
T ss_pred CCCCccc-------ccccceEEEEEecccccccccccccccccccccccccccccccccccCccccccccccccccceee
Confidence 0000000 01224444442100 000 010 1389
Q ss_pred EcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCC-CCCCCeeecCCCeEEEe
Q 009127 369 INSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWE-DTVQSYHIDGYSFFVVG 447 (543)
Q Consensus 369 iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~ 447 (543)
|||+.|.. +.| .+.++.|++|+|+|.|.+ .+.|||||||++|+|++
T Consensus 382 ING~~~~~-~~~--------------------------------~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~ 428 (488)
T 3od3_A 382 INGQAFDM-NKP--------------------------------MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILS 428 (488)
T ss_dssp ETTBCCCT-TCC--------------------------------SEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEE
T ss_pred ECCeeCCC-CCC--------------------------------ceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEec
Confidence 99998842 111 145789999999999987 67999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEec----CcccceeeecchhhhhcccEEEEEE
Q 009127 448 MDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALD----NVGMWNIRSENWARQYLGQQFYLRV 512 (543)
Q Consensus 448 ~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad----npG~w~~HCHil~Hed~GMm~~~~V 512 (543)
+++.... ..++.|||||.|+ +++++|+|++| +||.||||||+|+|||.|||..|+|
T Consensus 429 ~~g~~~~--------~~~~~~kDTV~v~-g~~~~i~~~f~~~~~~~G~~m~HCH~l~Hed~GMm~~f~V 488 (488)
T 3od3_A 429 ENGKPPA--------AHRAGWKDTVKVE-GNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488 (488)
T ss_dssp BTTBCCC--------GGGSSSBSEEEES-SSEEEEEECBCSCCCGGGCEEEEESSHHHHHTTCEEEEEC
T ss_pred cCCCccc--------cccCCceeEEEeC-CCEEEEEEEeccCCCCCCCEEEeCCchHHHhcCCcEEEEC
Confidence 9754322 1245799999999 99999999974 5789999999999999999999986
No 17
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=100.00 E-value=1.2e-78 Score=658.18 Aligned_cols=439 Identities=16% Similarity=0.150 Sum_probs=315.4
Q ss_pred CCeEEEEEEEEEEEec--CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCC-----------------------
Q 009127 26 SPYRFFTWKITYGDIY--PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREP----------------------- 80 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~~--~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~----------------------- 80 (543)
...++|+|++++.... +++..+.+|+|||++|||+|+|++||+|+|+++|+|++.
T Consensus 30 ~~~~~~~l~~~~~~~~l~~~~~~t~~~~ynG~~PGPtI~~~~Gd~v~V~~~N~L~~~~~~~~~~~~~p~~~~g~p~~~~~ 109 (612)
T 2g23_A 30 EVTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTE 109 (612)
T ss_dssp CTTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGS
T ss_pred CCeEEEEEEEEEEEEEECCCCcceEEEEECCccCCceEEEECCeEeeEEEEECcCCcccccccccccccccCCCcccccc
Confidence 3467899999999875 455689999999999999999999999999999999853
Q ss_pred ------------------ceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCch----hhhhcc
Q 009127 81 ------------------FLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL----FHKAAG 138 (543)
Q Consensus 81 ------------------~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~----~q~~~G 138 (543)
+++||||+++.+ .+||++ ||+|.||++++|+|++.+++||||||||.. .|+.+|
T Consensus 110 p~~~g~~~~~~~~~~~~~tsiH~HG~~~~~--~~DG~p--~~~i~PG~s~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~G 185 (612)
T 2g23_A 110 PGRGGVEPNKDVAALPAWSVTHLHGAQTGG--GNDGWA--DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAG 185 (612)
T ss_dssp CSCTTCCCCHHHHTCCCCBCEEEETCCCCT--TTSCCG--GGCBCTTCEEEEEECCCSCSCEEEEEECCTTTHHHHTTTT
T ss_pred cccccccccccccccCCceEEEcCCCCCCC--ccCCCC--cCCCCCCCeEEEEEEecCCCceEEEecccCCcchhhhhcc
Confidence 899999998764 599998 899999999999999966799999999975 499999
Q ss_pred ceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHH--HH-HH------hcc---C-C----CCCCCCeEEEcCCCCC
Q 009127 139 AFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYV--LR-RL------LDS---G-H----NLPFPDGLLINGRGWN 201 (543)
Q Consensus 139 l~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~--~~-~~------~~~---g-~----~~~~~~~~liNG~~~~ 201 (543)
|+|+|||+++.+.+.+++.+++|++|+|+||+++.+.. +. .. +.. + . ....++.++|||+.
T Consensus 186 L~G~liV~~~~~~~~~lp~~d~d~~l~l~Dw~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~p~~~~~~gd~~lVNG~~-- 263 (612)
T 2g23_A 186 LYGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRI-- 263 (612)
T ss_dssp CEEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEE--
T ss_pred ceeEEEEcCcccccccCCCCcceEEEEEEEEeccCCcccccccccccccccccccccccCcccccCCcCCEEEECCcc--
Confidence 99999999976544445567999999999999975421 10 00 010 1 0 12467999999999
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCC-------eeEEEEEcCccc-cccccC------eEEEcCCCeEEEEEEe
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGH-------SMKLVEVEGSHT-LQNTYA------ALDIHLGQTYSVLVTM 267 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~-------~~~via~DG~~~-~p~~~~------~v~l~pgeR~dv~v~~ 267 (543)
.|.++|++| +|||||||+|+.+.+.|+|++| +|+|||+||+++ +|+.++ +|.|+|||||||+|++
T Consensus 264 ~p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~vIa~DG~~l~~P~~~~~~~~~~~l~l~pgeR~dvlVd~ 342 (612)
T 2g23_A 264 WPYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDF 342 (612)
T ss_dssp SCEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEEC
T ss_pred CCeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEEEEEeCCeEccCCEEecccCcccEEEECCcCeEEEEEEC
Confidence 899999999 9999999999999999999999 899999999999 599998 9999999999999999
Q ss_pred CCCCc-ceEEEEeeccCCC-------ccceEEEEEecCCCCC--CCCCCCCCCC---Cccccccccc-cccccccCCCCC
Q 009127 268 DQAPQ-DYYIVVSSRFTPR-------VLTTTAILHYSNSRRG--VSGPIPGGPT---TEIAWSLNQA-RSIRWNLTASGP 333 (543)
Q Consensus 268 ~~~~g-~y~i~~~~~~~~~-------~~~~~~il~y~~~~~~--~~~~~p~~p~---~~~~~~~~~~-~~~~~~l~~~~~ 333 (543)
++.+| +|+|+........ ......++++...... ....+|..-. .......... +.+. +.. +
T Consensus 343 ~~~~g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~~~~~~~~~~P~~L~~~~~~l~~~~~~~~r~~~--~~~--~ 418 (612)
T 2g23_A 343 RALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGHRLIV--LTP--P 418 (612)
T ss_dssp TTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCEEEEEE--ECC--T
T ss_pred CCCCCCEEEEEeCCccCCCCccccccCccccceEEEEEccCCCCCCCCCChhhccccccCCcccccceeEEe--ecc--c
Confidence 98666 5888765421100 0011134444322211 1111221000 0000000000 0000 000 0
Q ss_pred CCCCCCCCCcccccceEEEEEecc--C-------------CCcCC-eEEEEEcCeeecCCCCchhhhcccCCCcccccCC
Q 009127 334 RPNPQGSYHYGMIKISRTITLANS--A-------------PYMNG-KQRYAINSVSFVPADTPLKLADYFKIPGVFTLGS 397 (543)
Q Consensus 334 ~~~p~~~~~~~~~~~~~~~~~~~~--~-------------~~~~g-~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~ 397 (543)
.. . +.....+.+.+... . ...+| ...|.|||+.|.+
T Consensus 419 ~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNG~~~~~--------------------- 470 (612)
T 2g23_A 419 GT--K-----GSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTAATFND--------------------- 470 (612)
T ss_dssp TC--T-----TSTTCCCEEEEEEEC-----CCSCTTEEEEECTTSCEEEEEEEECSTTS---------------------
T ss_pred cc--c-----ccccccceeeccccccccccccccccceeeeccCCceeEEEECCccCCC---------------------
Confidence 00 0 00000001111100 0 00112 2457777776631
Q ss_pred CCCCCCCCCCccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCC----------------CCCC
Q 009127 398 MPTSPNWGNAYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPAS----------------RTRY 461 (543)
Q Consensus 398 ~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~----------------~~~~ 461 (543)
...+.++.|++|+|+|.|.+.+.||||||||.|||++++++.++..+ ...+
T Consensus 471 -------------~~~~~v~~G~~v~w~l~N~~~~~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 537 (612)
T 2g23_A 471 -------------GLGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPL 537 (612)
T ss_dssp -------------CCCEEEETTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCC
T ss_pred -------------CCceEecCCCEEEEEEEeCCCCCCCeEEcCceEEEecccCcccccccccccCcccccccccccccCC
Confidence 11245789999999999999999999999999999998643221100 0123
Q ss_pred CCCCCCcceeEEeCCCCEEEEEEEec-CcccceeeecchhhhhcccEEEEEEecCC
Q 009127 462 NLRDTVARSTTQVYPRSWTAIYMALD-NVGMWNIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 462 ~~~~p~~rDTv~vp~~g~v~irf~ad-npG~w~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
+..++.|||||.|+|+++++|+|+|+ |||.|||||||++|||.|||..|+|...+
T Consensus 538 ~~~e~~~kDTv~v~Pg~~~~i~~~~~~~pG~w~~HCHil~Hed~GMm~~f~V~p~~ 593 (612)
T 2g23_A 538 APNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPE 593 (612)
T ss_dssp CTTSSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHTTTCEEEEEEECHH
T ss_pred CcccccccCeEEECCCcEEEEEEEeCCCCccEEEEeCchhHhhcCCceEEEECchh
Confidence 44566799999999999999999999 99999999999999999999999997654
No 18
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=8e-55 Score=502.64 Aligned_cols=390 Identities=14% Similarity=0.195 Sum_probs=272.1
Q ss_pred cccCCCeEEEEEEEEEEEe--cCCCe--------------------------eEEEE-------EECCc--------CCC
Q 009127 22 VYGDSPYRFFTWKITYGDI--YPLGV--------------------------KQQGI-------LINGQ--------FPG 58 (543)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~--~~~g~--------------------------~~~~~-------~~Ng~--------~pg 58 (543)
..+.+.+|+|-+.|.+..+ .+.|. .+++. +||+. +||
T Consensus 15 ~~~~~~~r~y~i~~~~~~w~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~PG 94 (1065)
T 2j5w_A 15 TPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLG 94 (1065)
T ss_dssp -----CEEEEEEEEEEEEEESCCCCCCCBBTTBCSSSTHHHHCCCSSCCCSEEEEEEEEEESSSSTTSBCCCCGGGTTSC
T ss_pred cccccceeEEEEEEEEEEeecCCCCcCCCccccchhhhheecccCCcccCCeEeEEEEEEecceeecCCcccccccCCcC
Confidence 4455779999999999886 33332 23333 57877 999
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCC----CCCCCCCCCC---CCCcCCCCCeEEEEEEeCCC---------c
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQR----RNSWQDGVYG---TTCPIPPGKNFTYVLQAKDQ---------I 122 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~----~~~~~DG~p~---tq~~i~PG~~~~y~f~~~~~---------~ 122 (543)
|+|||++||+|+|+|+|+|+++++|||||++++ +.+++||+++ +||+|+||++|+|+|+++++ +
T Consensus 95 P~Ir~~~GD~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~~~~dg~~g~~~t~~~I~PG~t~tY~f~~~~~~gp~~~d~~a 174 (1065)
T 2j5w_A 95 PIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNC 174 (1065)
T ss_dssp CCEEEETTCEEEEEEEEESSSCBCCEESSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTSCSE
T ss_pred CeEEEeCCeEEEEEEEECCCCCeeEEeCCccCCcccCCcccCCCCCcccccccccCCCCEEEEEEEeccccCCccCCCCc
Confidence 999999999999999999999999999999987 4567788774 79999999999999999754 4
Q ss_pred ccceecCCchh--hhhccceeEEEEecCCCCCCCCC-CCCCceEEEeee------eeeccHHHHHHHh-ccCCCC-----
Q 009127 123 GSYFYFPSFLF--HKAAGAFGGIRIWSRPRIPVPFP-PPAGDFTVLAGD------WYRSNHYVLRRLL-DSGHNL----- 187 (543)
Q Consensus 123 Gt~wYH~H~~~--q~~~Gl~G~liV~~~~~~~~~~~-~~~~e~~l~~~d------~~~~~~~~~~~~~-~~g~~~----- 187 (543)
||||||||.+. |+.+||+|+|||++++..+.|.+ .+|+|++|+++| |++... +.... +.+...
T Consensus 175 GT~wYHsH~~~~~qv~~GL~G~lIV~~~~~~~~p~~~~~d~e~~l~l~d~d~~~~w~~~~~--~~~~~~~p~~~~~~~~~ 252 (1065)
T 2j5w_A 175 VTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDN--IKTYCSEPEKVDKDNED 252 (1065)
T ss_dssp EEEEEECCSSHHHHHHHTCEEEEEEECTTCBSSSSBTTCCEEEEEEEEEEEGGGSTTHHHH--HHHHCSCGGGCCTTCHH
T ss_pred eEEEEEeccCchhHhhCccEEEEEEecCcccCCCccCCCccceEEEeeeecCCccccccch--hhhhhcCcccccccccc
Confidence 99999999874 56899999999999875433322 458899999995 444321 11121 111000
Q ss_pred --CCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCc-ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEE
Q 009127 188 --PFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLT-TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSV 263 (543)
Q Consensus 188 --~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~-~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv 263 (543)
..++.++|||+.+ ..+.+++++|++|||||+|+|.. ..+.|||+||+|+ ++|..+|++.|+||||+||
T Consensus 253 ~~~~~~~~~iNG~~~~~~~~l~v~~Ge~vRlRliNag~~~~~~~~~i~Gh~f~--------v~p~~~dtv~I~pGer~dV 324 (1065)
T 2j5w_A 253 FQQSNRMYSVNGYTFGSLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT--------NKNYRIDTINLFPATLFDA 324 (1065)
T ss_dssp HHHHTEEEEETTEETTCCCCCEEETTCEEEEEEEECSSTTCCEEEEETTCCEE--------ETTEEESEEEECBTCEEEE
T ss_pred ccccCcEEEECCccCCCCcceEECCCCEEEEEEEcCCcccceeEEEEcCCEEE--------ECCeeecEEEECCCcEEEE
Confidence 0235799999984 35789999999999999999975 6899999999999 3567899999999999999
Q ss_pred EEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCC------CCCC
Q 009127 264 LVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGP------RPNP 337 (543)
Q Consensus 264 ~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~------~~~p 337 (543)
+|++++ +|.|+|+|....... ....+.++|.+...+.+.+.|..+ .....+.+++.+.|++.+... .+++
T Consensus 325 lv~~~~-pG~y~i~~h~~~h~~-~Gm~~~~~V~~~~~~~~~~~~~g~--~~~~~~i~A~e~~wdy~~~~~~~~~~~~~~~ 400 (1065)
T 2j5w_A 325 YMVAQN-PGEWMLSCQNLNHLK-AGLQAFFQVQECNKSSSKDNIRGK--HVRHYYIAAEEIIWNYAPSGIDIFTKENLTA 400 (1065)
T ss_dssp EEECCS-CEEEEEEECSHHHHH-TTCEEEEEEECSCCCCCCCCCTTS--EEEEEEEEEEEEEEESCTTSBCTTTCCBTTC
T ss_pred EEEeCC-CeeEEEEecCcchhh-CCCEEEEEEecCCCcccccccccc--ceeEEEEeceecccccCCCCcccccccccCC
Confidence 999995 899999998753221 356788888776544333332221 111124456777787775542 1222
Q ss_pred CCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecC
Q 009127 338 QGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAAN 417 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 417 (543)
.+++ ...+ |.......++++...++ +.|.+ +.|+.+ ....|.........+++.++
T Consensus 401 ~~s~-------~~~~-l~~~~~~ig~~y~k~v~-~~y~d--------------~~f~~~-~~~~~~~~~~g~lgpvi~a~ 456 (1065)
T 2j5w_A 401 PGSD-------SAVF-FEQGTTRIGGSYKKLVY-REYTD--------------ASFTNR-KERGPEEEHLGILGPVIWAE 456 (1065)
T ss_dssp TTCT-------THHH-HCCBTTBCCSEEEEEEE-EEESS--------------TTCCSB-CCCCGGGGGGTTSCCCEEEE
T ss_pred Cccc-------chhh-hccCCcccCceEeeeee-ecccC--------------CceEEc-CcCCcccccccccCceEEEe
Confidence 2211 1112 22222334556655665 55642 122211 11122111122335678999
Q ss_pred CCcEEEEEEEeCCCCCCCeeecCCCeEEEeec
Q 009127 418 FREFVEIVFQNWEDTVQSYHIDGYSFFVVGMD 449 (543)
Q Consensus 418 ~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~ 449 (543)
.|++++++|.|.....|+||+||+.|++++.|
T Consensus 457 ~gd~i~i~f~N~~~~~~s~h~hG~~f~~~~~g 488 (1065)
T 2j5w_A 457 VGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEG 488 (1065)
T ss_dssp TTEEEEEEEEECSSSCBCCEEESSBCCGGGCS
T ss_pred CCCEEEEEEEECCCCCccCcccceeeeccCCC
Confidence 99999999999999999999999999988753
No 19
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=100.00 E-value=3.7e-54 Score=434.88 Aligned_cols=266 Identities=23% Similarity=0.325 Sum_probs=225.5
Q ss_pred CeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCC
Q 009127 27 PYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTC 104 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~ 104 (543)
++++|+|++++..+.+ +|..+.+|+|||++|||+|||++||+|+|+|+|.++.+++|||||+++.+..++||+|+ +||
T Consensus 1 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~ 80 (318)
T 3g5w_A 1 EKREFDLSIEDTRIVLVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQH 80 (318)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred CeEEEEEEEEEEEEEcCCCcEEEEEEECCccCCceEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccc
Confidence 4789999999999876 68889999999999999999999999999999999999999999999988789999998 999
Q ss_pred cCCCCCeEEEEEEeCCCcccceecCCchhhh---hccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHh
Q 009127 105 PIPPGKNFTYVLQAKDQIGSYFYFPSFLFHK---AAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLL 181 (543)
Q Consensus 105 ~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~---~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 181 (543)
+|+||++++|+|++ +++||||||||...+. .+||+|+|||++++..+.+. .+++|++|+++||+++..... .
T Consensus 81 ~i~PG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~~~~~~-~~d~e~~l~l~dw~~~~~~~~---~ 155 (318)
T 3g5w_A 81 AIEPGDTFTYKFKA-EPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIEK-TVTKDYILMLSDWVSSWANKP---G 155 (318)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHHHHSCCEEEEEEECSSCCHHHH-TCCEEEEEEEEEECGGGTTCT---T
T ss_pred cCCCCCEEEEEEEc-CCCEEEEEEccCChhhhhccCCCEEEEEEcCCCcccccc-cccceeEEEEEeecccccccc---c
Confidence 99999999999999 4899999999987543 48999999999875422111 458999999999987642211 1
Q ss_pred ccCCCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc-cccccCeEEEcCCC
Q 009127 182 DSGHNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT-LQNTYAALDIHLGQ 259 (543)
Q Consensus 182 ~~g~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~-~p~~~~~v~l~pge 259 (543)
..+.....++.++|||+.+ ..+.+++++|++|||||+|++.. .|+|||+||+|+||+.||.++ +|..+|++.|+|||
T Consensus 156 ~~~~~~~~~d~~~ING~~~~~~~~l~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~dG~~~~~p~~~dtv~l~pge 234 (318)
T 3g5w_A 156 EGGIPGDVFDYYTINAKSFPETQPIRVKKGDVIRLRLIGAGDH-VHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGE 234 (318)
T ss_dssp CCCCTTCCCCEEEETTBCBTSSCCEEECTTCEEEEEEEECSSS-CEEEEETTSCEEEEEETTEEEEEEEEESEEEECTTC
T ss_pred cCCCCCCcCcEEEEcCcCCCCCccEEeCCCCEEEEEEEeCCCc-eEEEEECCcEEEEEecCCcccCCCccccEEEECCCC
Confidence 1122223578999999984 12349999999999999999986 799999999999999999998 78999999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeeccCCC-----ccceEEEEEecCCC
Q 009127 260 TYSVLVTMDQAPQDYYIVVSSRFTPR-----VLTTTAILHYSNSR 299 (543)
Q Consensus 260 R~dv~v~~~~~~g~y~i~~~~~~~~~-----~~~~~~il~y~~~~ 299 (543)
|+||+|+++ .+|.|.++|+...... .....++|+|.+..
T Consensus 235 r~~v~~~a~-~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 235 RYDVILNMD-NPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEEEEEECC-SCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEEEEEECC-CCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 999999999 6999999998754332 13457889998764
No 20
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=2.4e-55 Score=487.83 Aligned_cols=238 Identities=16% Similarity=0.200 Sum_probs=178.9
Q ss_pred EEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCC----CCCCCCCCC---CCC
Q 009127 32 TWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQR----RNSWQDGVY---GTT 103 (543)
Q Consensus 32 ~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~----~~~~~DG~p---~tq 103 (543)
.|++.++.... .|+.+..|+ ++|||+|||++||+|+|+|+|.|+++++|||||+++. +.+++||++ .+|
T Consensus 50 ~l~~~~~~~~~~~~~~~~~~~---~~pGP~Ir~~~GD~v~V~v~N~l~~~tsIHwHGl~~~~~~DG~p~~Dg~~~~~vtq 126 (742)
T 2r7e_A 50 TLFVEFTDHLFNIAKPRPPWM---GLLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREKED 126 (742)
T ss_dssp CCCCCCSSSCCCCSSCSTTTT---TTSEEEEEECSEEEEECCEECCSSSCCCCCCSSSCCCSSSSCCCSSCSCCSSSSSS
T ss_pred EEEEEecceEEECCccccccc---CCcCCeEEEECCCEEEEEEEECCCCCEeEEecCcccCccccCCccCCCCccccccc
Confidence 44444444433 255555443 8999999999999999999999999999999999875 344455554 279
Q ss_pred CcCCCCCeEEEEEEeCC---------CcccceecCCchh--hhhccceeEEEEecCCCCCCCCCCCCCceEEEeee----
Q 009127 104 CPIPPGKNFTYVLQAKD---------QIGSYFYFPSFLF--HKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGD---- 168 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~~---------~~Gt~wYH~H~~~--q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d---- 168 (543)
|+|+||++|+|+|++++ ++||||||||.+. |+.+||+|+|||+++...........+|+++++++
T Consensus 127 ~~I~PG~s~tY~f~v~~~~gP~~~d~~~GT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~e~~l~~~~~de~ 206 (742)
T 2r7e_A 127 DKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLFAVFDEG 206 (742)
T ss_dssp SSCCTTCEECCEEEECGGGSCCSSSCSSCCEEECCCSCSHHHHHHHCCEEEEECSSSCTTTTTTTCCCEECCCEECCCCS
T ss_pred CcCCCCCeEEEEEEeccccCCCcCCCCcEEEEEccCCChHHHhhCCcEEEEEEecCcccCcccCceeeEEEEEeecccCC
Confidence 99999999999999853 4699999999775 89999999999999765322111223788888764
Q ss_pred --eeeccHHHHHHHhccCCCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcc-eEEEEEeCCeeEEEEEcCcc
Q 009127 169 --WYRSNHYVLRRLLDSGHNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTT-SINFRIQGHSMKLVEVEGSH 244 (543)
Q Consensus 169 --~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~-~~~~~i~g~~~~via~DG~~ 244 (543)
|++.........+.........+.++|||+.+ ..+.+++++|++|||||+|+++.. .|.||||||.|+|++.
T Consensus 207 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~~~l~v~~Ge~vrlrliN~g~~~~~h~~hlhGh~f~Vvg~---- 282 (742)
T 2r7e_A 207 KSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNH---- 282 (742)
T ss_dssp SSSCCCCCC-------CCSCCCCCCCCEETTBCTBCCCCCEECSSSCEEEECCCCCSSSCCCCCCCTTCCCEETTE----
T ss_pred ccccccccccccccCCCccccccCceEEECCccCCCCcceEEcCCCEEEEEEEeCCCCCcceEEEECCCEEEEEeE----
Confidence 44432111000011111122356789999985 357899999999999999999864 7999999999999842
Q ss_pred ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 245 TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 245 ~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
.+|++.|.|||+++|+++++ .+|.|+++|+..
T Consensus 283 ----~~Dtv~v~Pg~~~~v~~~~~-~pG~w~~hCH~~ 314 (742)
T 2r7e_A 283 ----RQASLEISPITFLTAQTLLM-DLGQFLLFCHIS 314 (742)
T ss_dssp ----ECCSCCCCTTCCCEEEECCC-SCSEECCCCCSS
T ss_pred ----ecceEEeCCCcEEEEEEEeC-CCeeEEEEeCCh
Confidence 36889999999999999999 699999999865
No 21
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=100.00 E-value=8e-53 Score=429.74 Aligned_cols=266 Identities=22% Similarity=0.363 Sum_probs=224.3
Q ss_pred CeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCC
Q 009127 27 PYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTC 104 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~ 104 (543)
.+++|+|++++..+.+ +|.++.+|+|||++|||+|+|++||+|+|+|+|.++++++|||||+++...+++||+|+ +||
T Consensus 2 ~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pGP~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~ 81 (339)
T 2zwn_A 2 AEREFDMTIEEVTIKVAPGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQ 81 (339)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred ceEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCeEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccC
Confidence 4689999999999876 59999999999999999999999999999999999999999999999988888999998 999
Q ss_pred cCCCCCeEEEEEEeCCCcccceecCCchh--hhh-ccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHHh
Q 009127 105 PIPPGKNFTYVLQAKDQIGSYFYFPSFLF--HKA-AGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRLL 181 (543)
Q Consensus 105 ~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~--q~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 181 (543)
+|.||++|+|+|+++ ++||||||||... |+. +||+|+|||+++.....+ ...++|++++++||+...... ..
T Consensus 82 ~I~PG~~~~y~f~~~-~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~~~~~~-~~~d~e~~l~l~d~~~~~~~~---~~ 156 (339)
T 2zwn_A 82 PIEAGDSYTYKFKAD-RIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQPLPIE-KRVTKDVIMMMSTWESAVADK---YG 156 (339)
T ss_dssp CBCTTCEEEEEEECC-SCEEEEEECCSSHHHHTTTSCCEEEEEEECSSCCTTG-GGCSEEEEEEEEEECGGGTTC---TT
T ss_pred ccCCCCeEEEEEECC-CCEEEEEEecCCchhhhhcCCceEeEEecCCCccccc-ccCCceEEEEeeheecccccc---cC
Confidence 999999999999995 8999999999764 888 999999999986542211 135789999999998742110 00
Q ss_pred ccCCCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccc-ccccCeEEEcCCC
Q 009127 182 DSGHNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTL-QNTYAALDIHLGQ 259 (543)
Q Consensus 182 ~~g~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~-p~~~~~v~l~pge 259 (543)
..+.....++.++|||+.+ ..+.+++++|++|||||+|+++. .|+|||+||+|+||+.||.+++ |..+|++.|+|||
T Consensus 157 ~~g~~~~~~~~~~ING~~~~~~~~~~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~DG~~~~~p~~~dtv~l~pg~ 235 (339)
T 2zwn_A 157 EGGTPMNVADYFSVNAKSFPLTQPLRVKKGDVVKIRFFGAGGG-IHAMHSHGHDMLVTHKDGLPLDSPYYADTVLVSPGE 235 (339)
T ss_dssp CCCSTTSCCCEEEETTBCTTSSCCEEECTTCEEEEEEEECSSS-CEEEEETTCCEEEEEETTEEEEEEEEESEEEECTTC
T ss_pred CCCCCccccceEEEccccCCCcccEEECCCCEEEEEEEeCCCc-eEEEEECCcEEEEEEeCCeecCCCcEEEEEEECCCC
Confidence 1111222578999999984 12349999999999999999965 8999999999999999999985 8889999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeeccC-----CCccceEEEEEecCCC
Q 009127 260 TYSVLVTMDQAPQDYYIVVSSRFT-----PRVLTTTAILHYSNSR 299 (543)
Q Consensus 260 R~dv~v~~~~~~g~y~i~~~~~~~-----~~~~~~~~il~y~~~~ 299 (543)
|+||+|+++ .+|.|+++|+.... .......++|+|.+..
T Consensus 236 r~~v~~~~~-~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 236 RYDVIIEAD-NPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EEEEEEECC-SCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred EEEEEEEeC-CCeeEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 999999998 58999999986542 1223457899998754
No 22
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=2e-50 Score=428.78 Aligned_cols=396 Identities=16% Similarity=0.126 Sum_probs=263.8
Q ss_pred CeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcC
Q 009127 27 PYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPI 106 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i 106 (543)
.++++.++++++.+..+| .+++|||++ ||+|+|++||+|+|+|+|.+...+++||||.... ++|+|
T Consensus 27 ~~~~~~~~~~~~~~~f~g---~~~~vNG~~-~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~----------~~~~i 92 (447)
T 2dv6_A 27 VVFTLRTGIAEGRMVYIG---VGGDIDHKI-NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAAR----------SAIVN 92 (447)
T ss_dssp EEEEEEEEEETTEEEEEE---ESGGGTTCB-SCCEEEETTCEEEEEEECSSSSCBCCEETTTTEE----------CCCBC
T ss_pred ceEEEEEEecccEEEEec---cceeecCCc-CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCcc----------cceec
Confidence 445566666554454443 566999999 9999999999999999999988899999996311 47999
Q ss_pred CCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEecCCCCCCC--CC---CCCCceEEEeeeeeeccHHH--HH-
Q 009127 107 PPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVP--FP---PPAGDFTVLAGDWYRSNHYV--LR- 178 (543)
Q Consensus 107 ~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~--~~---~~~~e~~l~~~d~~~~~~~~--~~- 178 (543)
.||++++|.|++. ++||||||||...|+.+||.|.|+|+++...... +. ....+++..+ |+....... +.
T Consensus 93 ~pG~~~~~~f~~~-~~Gt~~y~~~~~~h~~~Gm~G~i~V~~~~~~~~~~~~~~~~~~~~~~p~~~-d~~~~~~~~~~l~~ 170 (447)
T 2dv6_A 93 GKNASSTFSFVAS-KVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPADLPGPI-GPRQAKTVRIDLET 170 (447)
T ss_dssp STTBEEEEEEECC-SCEEEEEECCSTTHHHHTCEEEEEEESSCCCCCCCSSBCCBCCTTCSCCCC-CSCCCCEEEEEEEE
T ss_pred CCCCeEEEEEEcC-CCEEEEEEeCCCChhhCCCEEEEEEeCCccccCCCcchhhccChhhcCCcc-ccCCCcEEEEEEEE
Confidence 9999999999995 6999999999989999999999999986542210 00 0001111100 100000000 00
Q ss_pred HHhccC-CCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCC-cceEEEEEeCCeeEEEEEcCccccccccCeEEEc
Q 009127 179 RLLDSG-HNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGL-TTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIH 256 (543)
Q Consensus 179 ~~~~~g-~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~-~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~ 256 (543)
...... ......+.+++||+.. .|.+++++|++||||++|.+. ...+.+|+||. ++.||.+ +++.|.
T Consensus 171 ~~~~~~~~~g~~~~~~~~NG~~p-gp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~----~~~DG~~------~~~~i~ 239 (447)
T 2dv6_A 171 VEVKGQLDDNTTYTYWTFNGKVP-GPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGA----TGPGGAA------AFTQTD 239 (447)
T ss_dssp EEEEEEEETTEEEEEEEETTBBS-CCCEEEETTCEEEEEEEECTTCSSCBCCEETTC----CSGGGGG------GGCCBC
T ss_pred EEEEEeccCCceeEEEEECCccC-CCeEEecCCCEEEEEEEeCCCCceeEEEeeccc----cCCCCCC------ccEEeC
Confidence 000000 0012346799999953 689999999999999999985 34677888874 2578874 234599
Q ss_pred CCCeEEEEEEeCCCCcceEEEEeeccC-CC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCC
Q 009127 257 LGQTYSVLVTMDQAPQDYYIVVSSRFT-PR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPR 334 (543)
Q Consensus 257 pgeR~dv~v~~~~~~g~y~i~~~~~~~-~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~ 334 (543)
||||++++|+++ .+|+||++++.... .+ .....+.|.|.+.. .+|. .+....+.. -++.....
T Consensus 240 pG~~~~~~~~~~-~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~-----~~P~---~d~~~~~~~---~~~~~~~~--- 304 (447)
T 2dv6_A 240 PGEETVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEG-----GLPQ---VDREFYVMQ---GEIYTVKS--- 304 (447)
T ss_dssp TTCEEEEEEECC-SCEEEEEECCSSSHHHHHHTTCEEEEEEECTT-----CSCC---CSEEEEEEE---EEECBSSC---
T ss_pred CCCEEEEEEECC-CCeEEEEEeCCCChHHHHhCCCEEEEEEeCCC-----CCCC---CCeeEEEEe---cccccCCc---
Confidence 999999999998 47999999975211 11 12345677776432 1221 111100000 00100000
Q ss_pred CCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEE
Q 009127 335 PNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVM 414 (543)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 414 (543)
.... +.. .+.+... .......|.|||+.+.... ...+
T Consensus 305 ~~~~-----g~~----~~~~~~~--~~~~~~~~~iNG~~~~~~~--------------------------------~~~~ 341 (447)
T 2dv6_A 305 FGTS-----GEQ----EMDYEKL--INEKPEYFLFNGSVGSLTR--------------------------------SHPL 341 (447)
T ss_dssp TTCC-----EEC----CBBHHHH--HTTCCSEEEETTSTTCCCC--------------------------------CCCE
T ss_pred cccc-----ccc----cCChHHh--hccCCCEEEECCcccCCCC--------------------------------Ccce
Confidence 0000 000 0000000 0011246899998763100 1236
Q ss_pred ecCCCcEEEEEEEeCC-CCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCC-cceeEEeCCCCEEEEEEEecCcccc
Q 009127 415 AANFREFVEIVFQNWE-DTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTV-ARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 415 ~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~-~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++.|++++|+|.|.+ ...||||||||+|+||+.+++.. ..|. +|||+.|+++++++|+|++||||.|
T Consensus 342 ~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv~~dG~~~----------~~p~~~~dtv~l~pg~r~~i~~~~~~pG~~ 411 (447)
T 2dv6_A 342 YASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSLGSVV----------SPPLIGVQTVSVPPGGATIVDFKIDRAGRY 411 (447)
T ss_dssp EECTTCEEEEEEEEEESSCCEEEEEETCCEEEECGGGCSS----------SCCEEEESEEEECTTEEEEEEEECCSCEEE
T ss_pred EECCCCEEEEEEEeCCCCceEeEEEcCcEEEEEEcCCccc----------CCCcccccEEEECCCcEEEEEEECCCCEEE
Confidence 7789999999999986 46899999999999999975422 2344 7999999999999999999999999
Q ss_pred eeeecchhhhhcccEEEEEEecCCC
Q 009127 493 NIRSENWARQYLGQQFYLRVYSPAN 517 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~p~~ 517 (543)
++|||+++|++.|||+.|+|..+..
T Consensus 412 ~~hch~~~h~~~Gm~~~~~v~~~~~ 436 (447)
T 2dv6_A 412 ILVDHALSRLEHGLVGFLNVDGPKN 436 (447)
T ss_dssp EEEESSGGGGGGTCCEEEEECSCSC
T ss_pred EEEecCcCccccCCEEEEEEeCCCC
Confidence 9999999999999999999987654
No 23
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=100.00 E-value=1.1e-49 Score=404.52 Aligned_cols=259 Identities=20% Similarity=0.277 Sum_probs=220.0
Q ss_pred cCCCeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC--CCceeecCcccCCCCCCCCCCC
Q 009127 24 GDSPYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR--EPFLISWNGLQQRRNSWQDGVY 100 (543)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~--~~~~iH~HG~~~~~~~~~DG~p 100 (543)
+.+++++|+|++++..+.+ +|..+.+|+|||++|||+|+|++||+|+|+|+|.++ ..+++||||+. .+||++
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~-----~~dG~~ 108 (327)
T 1kbv_A 34 DYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAAT-----GQGGGA 108 (327)
T ss_dssp SSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC-----SGGGGT
T ss_pred CCCCEEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCeEEEeCCCEEEEEEEECCCCCCceeeEeCccc-----cCCCCC
Confidence 3456789999999999887 899999999999999999999999999999999997 58999999984 378877
Q ss_pred CCCCcCCCCCeEEEEEEeCCCcccceecCCc---hhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHH-
Q 009127 101 GTTCPIPPGKNFTYVLQAKDQIGSYFYFPSF---LFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYV- 176 (543)
Q Consensus 101 ~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~- 176 (543)
. ...|.||++++|+|++ +++||||||||. +.|+.+||+|+|||++++. .+.+|+|++++++||++.....
T Consensus 109 ~-~~~i~PG~~~~y~f~~-~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~~----~p~~d~e~~l~~~d~~~~~~~~~ 182 (327)
T 1kbv_A 109 A-ATFTAPGRTSTFSFKA-LQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEFYIVQGDFYTKGKKGA 182 (327)
T ss_dssp T-TTCBCTTEEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTC----CCCCSEEEEEEEEEECBSSCTTC
T ss_pred c-ceeecCCCEEEEEEEC-CCCeEEEEEeCCCChhhhhhcceEEEEEEecCCC----CCCCceEEEEEeeeeeccCcccc
Confidence 4 2359999999999999 479999999996 6899999999999998653 2246899999999999874210
Q ss_pred -------HHHHhccCCCCCCCCeEEEcCCCCC---cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccc
Q 009127 177 -------LRRLLDSGHNLPFPDGLLINGRGWN---GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTL 246 (543)
Q Consensus 177 -------~~~~~~~g~~~~~~~~~liNG~~~~---~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~ 246 (543)
..... ...++.++|||+.+. .+.+++++|++|||||+|+|+.+.+.|||+||+|+||+.||.+++
T Consensus 183 ~g~~~~~~~~~~-----~~~~~~~~iNG~~~~~~~~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~vi~~DG~~~~ 257 (327)
T 1kbv_A 183 QGLQPFDMDKAV-----AEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLI 257 (327)
T ss_dssp CEEECBCHHHHH-----HTCCSEEEETTSTTTTSGGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCE
T ss_pred ccccccChhHhc-----cCCCceEEEcCcccCCCCceeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEEEEcCCCcCC
Confidence 11111 124689999999841 147999999999999999998889999999999999999999999
Q ss_pred ccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCC
Q 009127 247 QNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSR 299 (543)
Q Consensus 247 p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~ 299 (543)
|..++++.|+||||+||+|+++ .+|.|+|+++...........|+|+|.+..
T Consensus 258 p~~~d~l~l~pGer~dv~v~~~-~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 258 NENVQSTIVPAGGSAIVEFKVD-IPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp ECSBSEEEECTTEEEEEEEEEC-SCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred CCceeEEEECCCCEEEEEEEeC-CCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 9999999999999999999999 589999999865432123578999998765
No 24
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=100.00 E-value=3.5e-48 Score=386.59 Aligned_cols=234 Identities=21% Similarity=0.306 Sum_probs=205.4
Q ss_pred CCeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CC
Q 009127 26 SPYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TT 103 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq 103 (543)
..+++|+|++++..+.. +|..+.+|+|||++|||+|||++||+|+|+|+|.++++++|||||++ ..++||+|+ +|
T Consensus 32 ~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~---~~~~DG~p~~~~ 108 (288)
T 3gdc_A 32 RTLREWDIVAVDKDFEIAPGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVH---RATMDGTPGIGA 108 (288)
T ss_dssp CEEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEESSCC---CGGGSCCTTSTT
T ss_pred CcEEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCcccEEecccc---ccccCCCCCccc
Confidence 34689999999998765 59999999999999999999999999999999999999999999996 357999998 99
Q ss_pred CcCCCCCeEEEEEEeCCCcccceecCCch---hhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHHHHHH
Q 009127 104 CPIPPGKNFTYVLQAKDQIGSYFYFPSFL---FHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYVLRRL 180 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~---~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 180 (543)
++|+||++++|+|++ +++||||||||.. .|+.+||+|+|||++++..+ ..++|++|+++||+.+.
T Consensus 109 ~~i~PG~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~~~----~~d~e~~l~~~d~~~~~------- 176 (288)
T 3gdc_A 109 GSIAPGQSFTYEFDA-TPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP----PADDEMVMVMNGYNTDG------- 176 (288)
T ss_dssp CSBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECSSCCC----CCSEEEEEEEEEECCSS-------
T ss_pred eeECCCCEEEEEEEc-CCCccEEEEecCcchHHHHhCcCeEEEEEeCCccCC----CCcceEEEEEeeEecCC-------
Confidence 999999999999999 5899999999976 79999999999999976532 34799999999998762
Q ss_pred hccCCCCCCCCeEEEcCCCCC--cceEEEecCCEEEEEEEEcCCcc-eEEEEEeCCeeEEEEEcCccccccccCeEEEcC
Q 009127 181 LDSGHNLPFPDGLLINGRGWN--GYTFTVEPGRTYRFRISNVGLTT-SINFRIQGHSMKLVEVEGSHTLQNTYAALDIHL 257 (543)
Q Consensus 181 ~~~g~~~~~~~~~liNG~~~~--~p~~~v~~G~~~rlRiiN~~~~~-~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~p 257 (543)
+ ..++.++|||+.+. .+.++++.|++||||++|++... .|+|||+||.|+|++.++....|...|++.|.|
T Consensus 177 ---g---~~~~~~~iNG~~~~~~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~~~~~~~~~Dtv~v~p 250 (288)
T 3gdc_A 177 ---G---DDNEFYSVNGLPFHFMDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTISQVQ 250 (288)
T ss_dssp ---T---TCCSEEEETTSTTHHHHSCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTCCSSCSEEESEEEEET
T ss_pred ---C---CCcceEEECcccccccCcccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCCccCCCceeeEEEeCC
Confidence 1 24679999999841 24799999999999999999653 799999999999998444333568899999999
Q ss_pred CCeEEEEEEeCCCCcceEEEEeec
Q 009127 258 GQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 258 geR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
|||++|+++++ .||.|.++|+..
T Consensus 251 g~~~~v~~~~~-~pG~~~~hCH~~ 273 (288)
T 3gdc_A 251 GQRGILELRFP-YPGKFMFHAHKT 273 (288)
T ss_dssp TCEEEEEECCC-SCEEEEEECSSH
T ss_pred CceEEEEEECC-CCEEEEEEecCh
Confidence 99999999999 799999999764
No 25
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=100.00 E-value=1.1e-47 Score=391.33 Aligned_cols=241 Identities=18% Similarity=0.190 Sum_probs=191.2
Q ss_pred CCeEEEEEEEEEEEecCCCeeE-EEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCC
Q 009127 26 SPYRFFTWKITYGDIYPLGVKQ-QGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTC 104 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~g~~~-~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~ 104 (543)
..+++|+|++++. ++|... ..+.+||++|||+|+|++||+|+|+|+|.++++++|||||+.+. .++||++.+||
T Consensus 46 g~~~~~~l~~~~~---~~~~~~~~~~~~ng~~pGP~I~v~~Gd~v~v~~~N~l~~~~sih~HG~~~~--~~~DG~~~t~~ 120 (343)
T 3cg8_A 46 GEVRHLKMYAEKL---ADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYE--ISSDGTAMNKS 120 (343)
T ss_dssp CCEEEEEEEEEEC---GGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCCTTTTC
T ss_pred CeEEEEEEEEEEc---cCCeeeeeeecCCCCccCCEEEEECCCEEEEEEEECCCCCeeEEecCcccC--CcCCCcccccc
Confidence 3579999999875 345322 22235899999999999999999999999999999999999876 57999998899
Q ss_pred cCCCCCeEEEEEEeCC------------CcccceecCCc------hhhhhccceeEEEEecCCCCCCCCCCCCCceEEEe
Q 009127 105 PIPPGKNFTYVLQAKD------------QIGSYFYFPSF------LFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLA 166 (543)
Q Consensus 105 ~i~PG~~~~y~f~~~~------------~~Gt~wYH~H~------~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~ 166 (543)
+|.||++++|+|++.+ ++||||||||. ..|+.+||+|+|||+++... .+|+|+++++
T Consensus 121 ~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~~~~~~-----~pd~e~~l~~ 195 (343)
T 3cg8_A 121 DVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDATHTIVF 195 (343)
T ss_dssp SBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEEEEEE
T ss_pred cccCCCEEEEEEEeCCCCcccccccCCCCceEEEEecCccccccchhhhhcCCeEEEEEecCCCC-----CCCceEEEEc
Confidence 9999999999999842 35899999996 37899999999999987542 1356666665
Q ss_pred eeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccc
Q 009127 167 GDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTL 246 (543)
Q Consensus 167 ~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~ 246 (543)
+|| +|||+.
T Consensus 196 ~d~------------------------~iNG~~----------------------------------------------- 204 (343)
T 3cg8_A 196 NDM------------------------TINNRK----------------------------------------------- 204 (343)
T ss_dssp ETT------------------------EETTCC-----------------------------------------------
T ss_pred ccc------------------------eecccC-----------------------------------------------
Confidence 442 344432
Q ss_pred ccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccc
Q 009127 247 QNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRW 326 (543)
Q Consensus 247 p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 326 (543)
T Consensus 205 -------------------------------------------------------------------------------- 204 (343)
T 3cg8_A 205 -------------------------------------------------------------------------------- 204 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCC
Q 009127 327 NLTASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGN 406 (543)
Q Consensus 327 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~ 406 (543)
|. ..
T Consensus 205 -----------------------------------------------~~--~~--------------------------- 208 (343)
T 3cg8_A 205 -----------------------------------------------PH--TG--------------------------- 208 (343)
T ss_dssp -----------------------------------------------TT--CC---------------------------
T ss_pred -----------------------------------------------CC--CC---------------------------
Confidence 00 00
Q ss_pred CccceeEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 009127 407 AYLQTSVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMAL 486 (543)
Q Consensus 407 ~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 486 (543)
..+.++.|++++|+|.|.+.+.||||||||.|+|+.. |.+.. ....+.|+||+.|+|++++.|+|++
T Consensus 209 -----~~l~v~~Ge~vri~l~N~g~~~HpfHlHGh~f~v~~~--G~~~~------p~~~~~~~Dtv~v~PG~~~~v~~~~ 275 (343)
T 3cg8_A 209 -----PDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRT--GILTG------PDDPSRVIDNKITGPADSFGFQIIA 275 (343)
T ss_dssp -----CCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSS--SSCCS------TTCCCCEESEEEECTTCEEEEEEET
T ss_pred -----ccEEeCCCCEEEEEEEcCCccccccEecCcEEEEecc--CcccC------CCCcccceeeEEeCCCCEEEEEEEE
Confidence 0023457889999999998899999999999999743 32221 1123578999999999999999995
Q ss_pred ---cCcccceeeecchhhhhcccEEEEEEecCC
Q 009127 487 ---DNVGMWNIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 487 ---dnpG~w~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
+|||.|+||||+++|++.|||..|.|.+++
T Consensus 276 ~~~~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~ 308 (343)
T 3cg8_A 276 GEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPD 308 (343)
T ss_dssp TTTTCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCCCCeeEEEeCCCHHHHhccCcEEEEEecCC
Confidence 899999999999999999999999998765
No 26
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=7.3e-48 Score=444.65 Aligned_cols=385 Identities=12% Similarity=0.113 Sum_probs=261.1
Q ss_pred eeEEEEEECCcCCC--ceEEEecCCEEEEEEEECCCCCceeecCcccCCC-CCCCCCCCC-CCCcCCCCCeEEEEEEeCC
Q 009127 45 VKQQGILINGQFPG--PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRR-NSWQDGVYG-TTCPIPPGKNFTYVLQAKD 120 (543)
Q Consensus 45 ~~~~~~~~Ng~~pg--P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~-~~~~DG~p~-tq~~i~PG~~~~y~f~~~~ 120 (543)
..+.+.++||++|| |+|++++||+|+|+|.|. .+.+||||+++.+ +.++||++. | |+|.||.+++|+|++.
T Consensus 616 ~~~~~~~iNG~~~g~~P~l~~~~gd~v~~~v~~~---g~~~~~Hgl~~~g~t~~~dG~~~~t-~~i~pg~~~t~~~~~~- 690 (1065)
T 2j5w_A 616 ESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSA---GNEADVHGIYFSGNTYLWRGERRDT-ANLFPQTSLTLHMWPD- 690 (1065)
T ss_dssp HHTEEEEETTBCTTCCCCCEEETTCCEEEEEECC---CSTTCCEEEEETTCCEEETTEEESE-EEECTTCEEEEEECCC-
T ss_pred ccceEEEEeeEecCCCCceEEeCCCEEEEEEEcC---CCcceEEeeEEeCCceeecCeecce-EeecCCceEEEEEecC-
Confidence 46799999999999 889999999999999975 5569999999998 899999998 7 9999999999999994
Q ss_pred CcccceecCCchhhhhccceeEEEEecCCCCCCCCCCCCCceEEEe----eeeeeccHHHHHHHh-c-cCCC--------
Q 009127 121 QIGSYFYFPSFLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLA----GDWYRSNHYVLRRLL-D-SGHN-------- 186 (543)
Q Consensus 121 ~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~----~d~~~~~~~~~~~~~-~-~g~~-------- 186 (543)
++||||||||.+.|+.+||.|.++|++......+...++.|.++.+ +||++.....+...+ . .+..
T Consensus 691 ~~Gt~~~h~h~~~~~~~Gm~g~~~V~~~~~~~~~~~~yd~e~~~~iaa~~~dW~~~~~~~~~~~~~~~~~~~p~~~~~n~ 770 (1065)
T 2j5w_A 691 TEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDK 770 (1065)
T ss_dssp SCEEEEEEECSHHHHHTTCEEEEEEECCSCCCSCCCCCSEEEEEEEEEEEEEEESCSCCHHHHHHHHHHTCCCCCTTTCC
T ss_pred CCeEEEEecCCCcccCCCcEEEEEEcCCccccCCccCCCcceEEEEeeeeccccCCcchhhhhhccCCCccCccceeecC
Confidence 8999999999999999999999999987554344346788999999 899998655432211 0 1110
Q ss_pred --CCCCC------eEEEcCCC---------------CCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCc
Q 009127 187 --LPFPD------GLLINGRG---------------WNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGS 243 (543)
Q Consensus 187 --~~~~~------~~liNG~~---------------~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~ 243 (543)
...+. ++.+.+.. ...|.|++++|+++++|+.|... ..+.+|.||... ... |
T Consensus 771 ~~~~iG~tY~k~~y~~~~d~tft~~~~r~~~~~~v~~pGP~I~v~~Gd~v~v~l~N~~~-~~~sih~HGl~~--~~~-~- 845 (1065)
T 2j5w_A 771 GEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMAT-RPYSIHAHGVQT--ESS-T- 845 (1065)
T ss_dssp TTTCCCSEEEEEEEEEESSTTCCSBCCCCGGGGGGTTSCCCEEEETTEEEEEEEEECSS-SCBCCEESSCBC--SCS-C-
T ss_pred CCccccceEeeeEEEEEcCCcceecccCCccccccCCCCCEEEEecCCEEEEEEEeCCC-CCceEeeccccc--cCC-C-
Confidence 00011 11111111 02489999999999999999976 467777777433 221 1
Q ss_pred cccccccCeEEEcCCCeEEEEEEeCCC---------CcceEEEEeeccCCCc-cceEEEEEecCCCCCCCCCCCCCCCCc
Q 009127 244 HTLQNTYAALDIHLGQTYSVLVTMDQA---------PQDYYIVVSSRFTPRV-LTTTAILHYSNSRRGVSGPIPGGPTTE 313 (543)
Q Consensus 244 ~~~p~~~~~v~l~pgeR~dv~v~~~~~---------~g~y~i~~~~~~~~~~-~~~~~il~y~~~~~~~~~~~p~~p~~~ 313 (543)
...+.||+++...+.+.+. +|.||.+++.....+. ....+.|.+....... +..+..+
T Consensus 846 --------~~~i~PG~~~ty~~~~~~~~gp~~~~~~~gt~wYhsh~~~~~q~~~GL~G~liV~~~~~l~----~~~~~~d 913 (1065)
T 2j5w_A 846 --------VTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYLK----VFNPRRK 913 (1065)
T ss_dssp --------CCCBCTTCEEEEEEECCGGGSCCTTSCSEEEEEEECCTTHHHHHHTTCEEEEEEECCC---------CCCCE
T ss_pred --------CceeCCCCeEEEEEEecCccCCccccCCceEEEEecCCChHHhhhccccceeEecCccccc----ccCCCcc
Confidence 1256899998888887642 2589998764321111 1223334443221100 0001011
Q ss_pred cccccccc---ccccccc----CCCCCCCCCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcc
Q 009127 314 IAWSLNQA---RSIRWNL----TASGPRPNPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADY 386 (543)
Q Consensus 314 ~~~~~~~~---~~~~~~l----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~ 386 (543)
.+..+... ....+.+ .... +.|. .++ +.. .........|.|||+.|..
T Consensus 914 ~D~~l~~~~~d~~~~~y~~~n~~~~~--~~P~--------~v~----~~~-~~~~~~~~~~~iNG~~~~~---------- 968 (1065)
T 2j5w_A 914 LEFALLFLVFDENESWYLDDNIKTYS--DHPE--------KVN----KDD-EEFIESNKMHAINGRMFGN---------- 968 (1065)
T ss_dssp EEEEEEEEEEEGGGSTTHHHHHHHHC--SCGG--------GCC----TTC-HHHHHHTEEEEETTBCTTC----------
T ss_pred eEEEEEEEeecCCcceeeccCccccc--CCcc--------ccC----cch-hhhhccCceEEECCccCCC----------
Confidence 11100000 0000000 0000 0010 000 000 0000011347888887631
Q ss_pred cCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEEeCC--CCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCC
Q 009127 387 FKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQNWE--DTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLR 464 (543)
Q Consensus 387 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~--~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~ 464 (543)
...+.++.|++|+|+|.|.+ .+.||||||||+|+|++++
T Consensus 969 ------------------------~~~~~v~~G~~vr~~l~N~g~~~~~HpfHlHG~~F~vv~~~--------------- 1009 (1065)
T 2j5w_A 969 ------------------------LQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRG--------------- 1009 (1065)
T ss_dssp ------------------------CCCCEEETTCEEEEEEEECCSTTCCEEEEESSCCEEETTTT---------------
T ss_pred ------------------------CccEEeCCCCEEEEEEEeCCCCCcceeEEEcccEEEEEecC---------------
Confidence 11245789999999999985 5789999999999998753
Q ss_pred CCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEecCC
Q 009127 465 DTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 465 ~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
|.|||||.|+++++++|+|++||||.|+||||+++|++.|||+.|+|.+.+
T Consensus 1010 -p~~~DTv~v~pg~~~~v~~~ad~pG~w~~HCH~~~H~~~GM~~~~~V~~~~ 1060 (1065)
T 2j5w_A 1010 -VYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNE 1060 (1065)
T ss_dssp -CEEESEEEECTTCEEEEEECCCSCEEEEEEECCHHHHHTTCEEEEEEECCC
T ss_pred -CceeeEEEECCCCeEEEEEECCCCeeEEEEeCCHHHHhcCCcEEEEEecCc
Confidence 579999999999999999999999999999999999999999999998765
No 27
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=100.00 E-value=3e-46 Score=395.78 Aligned_cols=261 Identities=20% Similarity=0.229 Sum_probs=221.8
Q ss_pred ccCCCeEEEEEEEEEEEec-CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC--CCceeecCcccCCCCCCCCCC
Q 009127 23 YGDSPYRFFTWKITYGDIY-PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR--EPFLISWNGLQQRRNSWQDGV 99 (543)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~-~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~--~~~~iH~HG~~~~~~~~~DG~ 99 (543)
.+.+.+++|+|++++..+. .||..+.+|+|||++|||+|++++||+|+|+|+|.++ ..+++||||+.+ +||+
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~-----~dG~ 97 (442)
T 2zoo_A 23 RDHSAKVVINLETREQVGRIADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTG-----PGGG 97 (442)
T ss_dssp CSSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGG
T ss_pred cCCCcEEEEEEEEEEEEEEcCCCcEEEEEEECCcCCCCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcC-----CCCC
Confidence 3556789999999999987 5899999999999999999999999999999999986 499999999853 6887
Q ss_pred CCCCCcCCCCCeEEEEEEeCCCcccceecCC---chhhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHHH
Q 009127 100 YGTTCPIPPGKNFTYVLQAKDQIGSYFYFPS---FLFHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHYV 176 (543)
Q Consensus 100 p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H---~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~ 176 (543)
+.+ .+|.||++++|+|++ +++|||||||| ...|+.+||+|+|||++++.. +.+|+|++|+++||++.....
T Consensus 98 ~~~-~~i~pg~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~~~----~~~d~e~~l~l~d~~~~~~~~ 171 (442)
T 2zoo_A 98 AES-SFTAPGHTSTFNFKA-LNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGL----APVDREYYLVQGDFYTKGEFG 171 (442)
T ss_dssp GGG-CCBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCC----CCCSEEEEEEEEEECBSSCTT
T ss_pred Ccc-EEECCCCEEEEEEEc-CCCeEEEEecCCCChHHHHhCccEEEEEEeCCCCC----CCCCceEEEEeeeeeccCccc
Confidence 752 369999999999999 57999999997 468999999999999986532 245899999999999875310
Q ss_pred --------HHHHhccCCCCCCCCeEEEcCCCCC---cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc
Q 009127 177 --------LRRLLDSGHNLPFPDGLLINGRGWN---GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT 245 (543)
Q Consensus 177 --------~~~~~~~g~~~~~~~~~liNG~~~~---~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~ 245 (543)
.. .+ ....+++++|||+.+. .+.+++++|++|||||+|+|....+.|||+||.|+||+.||.++
T Consensus 172 ~~~~~~~~~~-~~----~~~~~~~~liNG~~~~~~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi~~DG~~~ 246 (442)
T 2zoo_A 172 EAGLQPFDMA-KA----IDEDADYVVFNGSVGSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSL 246 (442)
T ss_dssp CCEEECBCHH-HH----HTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSC
T ss_pred ccccccCChh-Hh----ccCCCCEEEECCCcCCCCCCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEEecCCccC
Confidence 00 01 1135789999999842 16899999999999999999888999999999999999999999
Q ss_pred cccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCC
Q 009127 246 LQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRR 300 (543)
Q Consensus 246 ~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~ 300 (543)
+|..++++.|.||||+||+|+++ .+|.|++++............++++|.+...
T Consensus 247 ~p~~~~~~~l~pg~r~~v~v~~~-~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 247 KNHNVQTTLIPAGGAAIVEFKVE-VPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EECSBSEEEECTTEEEEEEEECC-SCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred CCccceEEEECCCeeEEEEEEcC-CCCeEEEEecccccccccCceEEEEecCCCC
Confidence 99999999999999999999999 5899999997654311245789999987653
No 28
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=100.00 E-value=3.5e-45 Score=362.64 Aligned_cols=239 Identities=15% Similarity=0.169 Sum_probs=199.7
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCC
Q 009127 24 GDSPYRFFTWKITYGDIYPLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTT 103 (543)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq 103 (543)
+...++.|+|+|++.. .+.....+++|||++|||+|||++||+|+|+|+|.|+++++|||||+++.. .+||++.+|
T Consensus 3 ~~g~~~~~~l~~~~~~--~~~~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~~~~~~siH~HG~~~~~--~~DG~~~t~ 78 (276)
T 3kw8_A 3 AGGEVRHLKMYAEKLA--DGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEI--SSDGTAMNK 78 (276)
T ss_dssp -CCCEEEEEEEEEECT--TSCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCCG--GGSCCTTTT
T ss_pred CcceEEEEEEEEEeCC--CCceecceeccCCcccCCeEEEECCCEEEEEEEECCCCCccEeecCcccCC--ccCCCcCCc
Confidence 4567899999999843 344455778899999999999999999999999999999999999998864 699999889
Q ss_pred CcCCCCCeEEEEEEeCC------------CcccceecCCch------hhhhccceeEEEEecCCCCCCCCCCCCCceEEE
Q 009127 104 CPIPPGKNFTYVLQAKD------------QIGSYFYFPSFL------FHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVL 165 (543)
Q Consensus 104 ~~i~PG~~~~y~f~~~~------------~~Gt~wYH~H~~------~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 165 (543)
|+|+||++++|+|++++ ++||||||||.. .|+.+||+|+|||+++... ..|+|++++
T Consensus 79 ~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~-----~~drE~~l~ 153 (276)
T 3kw8_A 79 SDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDATHTIV 153 (276)
T ss_dssp CSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEEEEE
T ss_pred CCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEecCCCc-----ccccceEEE
Confidence 99999999999999963 379999999973 6999999999999997642 138999998
Q ss_pred eeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcc
Q 009127 166 AGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSH 244 (543)
Q Consensus 166 ~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~ 244 (543)
+++| +|||+.+ ..+.++++.|+++||||+|.+.. .|+||||||.|++++ ||..
T Consensus 154 l~~~------------------------~iNG~~~~~~p~i~v~~G~~vri~l~N~~~~-~Hp~HlHG~~f~v~~-~G~~ 207 (276)
T 3kw8_A 154 FNDM------------------------TINNRKPHTGPDFEATVGDRVEIVMITHGEY-YHTFHMHGHRWADNR-TGIL 207 (276)
T ss_dssp EETT------------------------EETTCCTTCCCCEEEETTCEEEEEEEEESSC-CEEEEETTCCEESSS-SSSC
T ss_pred eccc------------------------ccceecccCCCCEEEecCCEEEEEEecCCCc-ceeEEEccceeEEec-cCcc
Confidence 8653 7899875 46899999999999999999985 899999999999875 6654
Q ss_pred cc----ccccCeEEEcCCCeEEEEEEeCC--CCcceEEEEeeccCCCccceEEEEEecCC
Q 009127 245 TL----QNTYAALDIHLGQTYSVLVTMDQ--APQDYYIVVSSRFTPRVLTTTAILHYSNS 298 (543)
Q Consensus 245 ~~----p~~~~~v~l~pgeR~dv~v~~~~--~~g~y~i~~~~~~~~~~~~~~~il~y~~~ 298 (543)
.. +..+|++.|.|||++++++++++ .+|.|+++|+..... .....+.+.+...
T Consensus 208 ~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w~~HCH~~~H~-~~GM~g~~~V~~~ 266 (276)
T 3kw8_A 208 TGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHS-DMGMVGLFLVKKP 266 (276)
T ss_dssp CSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHH-HTTCEEEEEEECT
T ss_pred CCCcccccCCccEEeCCCceEEEEEEeccCCCCCeEEEECCCchHh-hCCCeEEEEEeCC
Confidence 32 35689999999999999999985 699999999864321 1234566666544
No 29
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=100.00 E-value=1.3e-44 Score=368.79 Aligned_cols=266 Identities=17% Similarity=0.174 Sum_probs=209.2
Q ss_pred ccCCCeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC
Q 009127 23 YGDSPYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG 101 (543)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~ 101 (543)
.+.+.+++|+|++++..+.+ +|.++.+|+|||++|||+|++++||+|+|+|+|. .+++||||+++.+....||.+.
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~---~~~~h~Hg~~~~~~~~~~~~~~ 103 (333)
T 1mzy_A 27 ASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINP---PENTMPHNIDFHAATGALGGGG 103 (333)
T ss_dssp SSSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEC---TTCCSCBCCEETTSCSGGGGGG
T ss_pred CCCCcEEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCcEEecCCCEEEEEEEEC---CCCcccccceecCCCCCCCCCc
Confidence 44557899999999999876 6999999999999999999999999999999999 5799999999876544555554
Q ss_pred -CCCcCCCCCeEEEEEEeCCCcccceecCCch-----hhhhccceeEEEEecCCCCC----CCCCCCCCceEEEeeeeee
Q 009127 102 -TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL-----FHKAAGAFGGIRIWSRPRIP----VPFPPPAGDFTVLAGDWYR 171 (543)
Q Consensus 102 -tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~-----~q~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~~~d~~~ 171 (543)
+ .|.||++++|+|++ +++||||||||.. .|+.+||+|+|||++++..+ .++ .+|+|++|+++||++
T Consensus 104 ~~--~i~PG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~-~~d~e~~l~l~D~~~ 179 (333)
T 1mzy_A 104 LT--LINPGEKVVLRFKA-TRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPV-RYDTVYYIGESDHYI 179 (333)
T ss_dssp GC--CBCTTEEEEEEEEC-CSCEEEEEECCCSTTHHHHHHHTTCEEEEEEECTTCCBCTTSCBC-CCSEEEEEEEEEECC
T ss_pred ee--EeCCCCEEEEEEEC-CCCEEEEEeecCCcccchhhhhCCCEEEEEEccCcCccccccCCC-ccchheeeeeeeecc
Confidence 5 49999999999999 4799999999975 69999999999999865421 122 568999999999988
Q ss_pred cc--HHHH----------HHHhccCCCCCCCCeEEEcCCCCC---cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeE
Q 009127 172 SN--HYVL----------RRLLDSGHNLPFPDGLLINGRGWN---GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMK 236 (543)
Q Consensus 172 ~~--~~~~----------~~~~~~g~~~~~~~~~liNG~~~~---~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~ 236 (543)
.. ...+ ...+.. .....++.++|||+... .+.++|++||+||||.+|++....+ ..+++|.|+
T Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ING~~~~~~~~~~l~v~~Ger~Rl~n~~~~~~~~~-h~i~~h~~~ 257 (333)
T 1mzy_A 180 PKDEDGTYMRFSDPSEGYEDMVAV-MDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRDSRP-HLIGGHGDL 257 (333)
T ss_dssp CBCTTSCBCCCSSHHHHHHHHHHH-HTTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCE-EEETCCEEE
T ss_pred CccccccccccccccccccchhHH-hhccCCcEEEECCcccccCCCcceEecCCCEEEEEECCCCCcccc-EEECCCCeE
Confidence 31 1100 000000 01245789999999841 3679999999888877766543222 347899999
Q ss_pred EEEEcCcccccc--ccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCC
Q 009127 237 LVEVEGSHTLQN--TYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSR 299 (543)
Q Consensus 237 via~DG~~~~p~--~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~ 299 (543)
|++ ||.++++. .+|++.|+||||+||+|+++ .+|+|+++|+...........++++|.+..
T Consensus 258 Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~a~-~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 258 VWE-TGKFHNAPERDLETWFIRGGTAGAALYKFL-QPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EET-TCCTTSCCEEEESBCCBCTTEEEEEEEECC-SCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEe-CCcccCCCccCcceEEECCCceEEEEEEcC-CCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 999 99998753 48999999999999999999 589999999875432124677899998754
No 30
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=100.00 E-value=6.7e-45 Score=366.94 Aligned_cols=242 Identities=15% Similarity=0.167 Sum_probs=199.0
Q ss_pred cccCCCeEEEEEEEEEEEecCCCee-EEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC
Q 009127 22 VYGDSPYRFFTWKITYGDIYPLGVK-QQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY 100 (543)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p 100 (543)
+.+...++.++|.+. ..++|.. ..++.+||++|||+|||++||+|+|+|+|+|+++++|||||+++. +.+||++
T Consensus 7 ~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~t~PGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~--~~~dG~~ 81 (313)
T 3tas_A 7 APAGGEVKRIKLYAE---RLGGGQMGYGLEKGKATIPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYE--ISSDGTK 81 (313)
T ss_dssp CCCCCCEEEEEEEEE---ECGGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCST
T ss_pred CCCCceEEEEEEEEE---EcCCCceeeeeecCCccccCCeEEEECCCEEEEEEEECCCCCccEeecCCcCC--ccCCCCc
Confidence 445567888888765 3456643 466778999999999999999999999999999999999999875 4699999
Q ss_pred CCCCcCCCCCeEEEEEEeC------------CCcccceecCCch------hhhhccceeEEEEecCCCCCCCCCCCCCce
Q 009127 101 GTTCPIPPGKNFTYVLQAK------------DQIGSYFYFPSFL------FHKAAGAFGGIRIWSRPRIPVPFPPPAGDF 162 (543)
Q Consensus 101 ~tq~~i~PG~~~~y~f~~~------------~~~Gt~wYH~H~~------~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~ 162 (543)
.+||+|.||++|+|+|++. +++||||||||.. .|+.+||+|+|||+++... .+|+|+
T Consensus 82 ~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~-----~~d~e~ 156 (313)
T 3tas_A 82 QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDRTH 156 (313)
T ss_dssp TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCB-----CCSEEE
T ss_pred cccCCcCCCCEEEEEEEeccCCccccccccCCCceEEEEeecCcccccchhhhhccccCceEeeccccc-----cccccc
Confidence 8999999999999999863 3579999999963 4688999999999997642 348999
Q ss_pred EEEeeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEc
Q 009127 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVE 241 (543)
Q Consensus 163 ~l~~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~D 241 (543)
+|+++||+. ||+.. ..+.++++.|++|||||+|++.. .++|||+||.|+|++.|
T Consensus 157 ~l~~~d~t~------------------------Ng~~~~~~~~l~v~~Ge~vr~~liN~g~~-~hpfHlHGh~F~v~~~~ 211 (313)
T 3tas_A 157 TIVFNDMTI------------------------NNRPAHTGPDFEATVGDRVEFVMITHGEY-YHTFHLHGHRWADNRTG 211 (313)
T ss_dssp EEEEETTEE------------------------TTCCTTCCCCEEEETTCEEEEEEEEESSC-CEEEEETTCCEESSTTS
T ss_pred eeeccchhc------------------------ccCCcccccccccccCCEEEEEEeccccc-ceeeeecCCeeEEEEEC
Confidence 999999854 34332 25789999999999999999975 89999999999999999
Q ss_pred Cccc---cccccCeEEEcCCCeEEEEEEeCC--CCcceEEEEeeccCCCccceEEEEEecCCC
Q 009127 242 GSHT---LQNTYAALDIHLGQTYSVLVTMDQ--APQDYYIVVSSRFTPRVLTTTAILHYSNSR 299 (543)
Q Consensus 242 G~~~---~p~~~~~v~l~pgeR~dv~v~~~~--~~g~y~i~~~~~~~~~~~~~~~il~y~~~~ 299 (543)
|... .|..+|++.|.||||++++|.+.+ .||.|.++|+..... .....+++.+....
T Consensus 212 ~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~~HCHi~~H~-~~GM~~~f~V~~~d 273 (313)
T 3tas_A 212 MLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSHS-DMGMVGLFLVKKPD 273 (313)
T ss_dssp SCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHH-HTTCEEEEEEECTT
T ss_pred CccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEEEEeCChHHH-HCCCeEEEEEECCC
Confidence 8765 367789999999999999998764 589999999864321 13455666665443
No 31
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=100.00 E-value=6.9e-45 Score=364.01 Aligned_cols=242 Identities=17% Similarity=0.209 Sum_probs=196.2
Q ss_pred cccCCCeEEEEEEEEEEEecCCC-eeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC
Q 009127 22 VYGDSPYRFFTWKITYGDIYPLG-VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY 100 (543)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p 100 (543)
..+...++.|+|.+++.. ++ ....++.+||++|||+|||++||+|+|+|+|+|++++||||||+++. +.+||++
T Consensus 23 ~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~gt~PGP~i~~~~GD~v~v~~~N~l~~~~siH~HG~~~~--~~~DG~~ 97 (299)
T 3t9w_A 23 VRAQGTTRRITMYAEKIS---DELYGYGLAPGGATVPGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYD--VNSDGTL 97 (299)
T ss_dssp ----CCEEEEEEEEEEEE---TTEEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCCT
T ss_pred cccCCCEEEEEEEEEecC---CCceeeeecCCCCCccCceEEEECCeEEEEEEEECCCCCccEEeCCcccC--CccCCCc
Confidence 456677899999988754 33 33455667999999999999999999999999999999999999765 5799998
Q ss_pred CCCCcCCCCCeEEEEEEeC------------CCcccceecCCch------hhhhccceeEEEEecCCCCCCCCCCCCCce
Q 009127 101 GTTCPIPPGKNFTYVLQAK------------DQIGSYFYFPSFL------FHKAAGAFGGIRIWSRPRIPVPFPPPAGDF 162 (543)
Q Consensus 101 ~tq~~i~PG~~~~y~f~~~------------~~~Gt~wYH~H~~------~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~ 162 (543)
.+||+|+||++|+|+|+++ +++||||||||.. .|+.+||+|+|||+++... .+|+|+
T Consensus 98 ~~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~~~-----~~d~e~ 172 (299)
T 3t9w_A 98 MNGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGDL-----LPKRQF 172 (299)
T ss_dssp TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEE
T ss_pred cccCccCCCCeEEEEEEeecccccCCCcCCCCCceeEEEecCCcccccchhhhcccccceEEEeccccc-----Cccccc
Confidence 8999999999999999985 2589999999953 4789999999999987642 348999
Q ss_pred EEEeeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEc
Q 009127 163 TVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVE 241 (543)
Q Consensus 163 ~l~~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~D 241 (543)
++++++|. +||+.+ +.+.++++.||++||||+|++.. .++|||+||.|+++..|
T Consensus 173 ~l~~~~~~------------------------~Ng~~~~~~p~l~v~~Ge~Vr~~liN~~~~-~HpfHlHGh~F~v~~~g 227 (299)
T 3t9w_A 173 TVVFNDMM------------------------INNRAHHDAPTFEANLGERVEWIAIGHGSN-FHTFHLHGHRWLDNRTG 227 (299)
T ss_dssp EEEEETTE------------------------ETTCCTTCCCEEEEETTCEEEEEEEEESSC-CCEEEETTCCEESSSSS
T ss_pred eeeeeeee------------------------ecCccccccccceecCCCEEEEEEEecccc-ceeeeEecceEEEEecc
Confidence 99997764 455543 46889999999999999999985 79999999999999888
Q ss_pred Ccccc---ccccCeEEEcCCCeEEEEEEeCC--CCcceEEEEeeccCCCccceEEEEEecCCC
Q 009127 242 GSHTL---QNTYAALDIHLGQTYSVLVTMDQ--APQDYYIVVSSRFTPRVLTTTAILHYSNSR 299 (543)
Q Consensus 242 G~~~~---p~~~~~v~l~pgeR~dv~v~~~~--~~g~y~i~~~~~~~~~~~~~~~il~y~~~~ 299 (543)
+.... +..+|++.|.||||++++|.+.+ .||.|.++|+...... ....+++.+....
T Consensus 228 ~~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~~HCHi~~H~~-~GM~~~f~V~~~~ 289 (299)
T 3t9w_A 228 MRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQNHSD-MGMAGMFLVRNAD 289 (299)
T ss_dssp SCCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEEEEECSHHHHH-TTCEEEEEEECTT
T ss_pred cccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEEEEcCCHHHHh-cCCeEEEEEECCC
Confidence 87654 34579999999999999987653 5899999998643211 2345666665443
No 32
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=100.00 E-value=1.1e-44 Score=370.04 Aligned_cols=265 Identities=18% Similarity=0.199 Sum_probs=205.9
Q ss_pred cCCCeEEEEEEEEEEEec--CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC
Q 009127 24 GDSPYRFFTWKITYGDIY--PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG 101 (543)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~--~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~ 101 (543)
+.+.+++|+|++++..+. +||.++.+|+|||++|||+|+|++||+|+|+|+|.+. ++||||+++++...+||.+.
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~---~~~~h~~~~h~~~~~~~~~~ 104 (336)
T 1oe1_A 28 SGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPAT---NAMPHNVDFHGATGALGGAK 104 (336)
T ss_dssp CCCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCCEEEETTCEEEEEEEECTT---CCSCBCCEETTSCSGGGGGG
T ss_pred CCCcEEEEEEEEEEEEEEECCCCcEEEEEEECCccCCCeEEEcCCCEEEEEEEcCCC---CCccccceECCCCCCCCCcc
Confidence 355679999999998864 6699999999999999999999999999999999973 45677776665556666655
Q ss_pred -CCCcCCCCCeEEEEEEeCCCcccceecCCc----hhhhhccceeEEEEecCCCCC----CCCCCCCCceEEEeeeeeec
Q 009127 102 -TTCPIPPGKNFTYVLQAKDQIGSYFYFPSF----LFHKAAGAFGGIRIWSRPRIP----VPFPPPAGDFTVLAGDWYRS 172 (543)
Q Consensus 102 -tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~~~d~~~~ 172 (543)
++ |.||++++|+|++. ++||||||||. +.|+.+||+|+|||++++..+ .+. .+|+|++|+++||++.
T Consensus 105 ~~~--i~pG~~~~y~f~~~-~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~~~~~~~~~~~-~~D~e~~l~~~D~~~~ 180 (336)
T 1oe1_A 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPL-HYDRAYTIGEFDLYIP 180 (336)
T ss_dssp GCC--BCTTEEEEEEEECC-SCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTCCBCTTSCBC-CCSEEEEEEEEEECCC
T ss_pred eEE--eCCCCEEEEEEECC-CCeEEEEecCCCCchhHHHhCCCeEEEEEecCcCCcccccCcc-cCCceeEeeeeeeeec
Confidence 54 99999999999994 79999999996 379999999999999865421 122 5689999999999984
Q ss_pred cH--HHHH----------HHhccCCCCCCCCeEEEcCCCCC---cceEEEecCCEEEEEEEEcCCcceEEE-EEeCCeeE
Q 009127 173 NH--YVLR----------RLLDSGHNLPFPDGLLINGRGWN---GYTFTVEPGRTYRFRISNVGLTTSINF-RIQGHSMK 236 (543)
Q Consensus 173 ~~--~~~~----------~~~~~g~~~~~~~~~liNG~~~~---~p~~~v~~G~~~rlRiiN~~~~~~~~~-~i~g~~~~ 236 (543)
.+ .++. ..+.. .....++.++|||+.+. .+.++|++|++||| +|++..+.+.+ .|++|.|+
T Consensus 181 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~liNG~~~~~~~~~~l~v~~GervRl--in~~~~~~~~~~~i~gh~~~ 257 (336)
T 1oe1_A 181 KGPDGKYKDYATLAESYGDTVQV-MRTLTPSHIVFNGKVGALTGANALTAKVGETVLL--IHSQANRDTRPHLIGGHGDW 257 (336)
T ss_dssp BCTTSSBCCCSSTGGGHHHHHHH-HHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEE--EEEESSSCBCEEETTCCEEE
T ss_pred cccCCceeecccccccccchhhH-hhcCCCCEEEECCeeccCCCCcceEcCCCCEEEE--EecCCCCccceEEECCcCce
Confidence 21 1110 00000 01235789999999841 38899999997765 56665555554 46999999
Q ss_pred EEEEcCcccccc--ccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCCC
Q 009127 237 LVEVEGSHTLQN--TYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSRR 300 (543)
Q Consensus 237 via~DG~~~~p~--~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~~ 300 (543)
|++ ||.+++|. .++++.|+||||+||+|++++ +|.|+++++...........|+++|.+...
T Consensus 258 Vi~-DG~~~~p~~~~~dtv~i~pGer~dvlv~~~~-pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 258 VWE-TGKFANPPQRDLETWFIRGGSAGAALYTFKQ-PGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EET-TCCTTSCCEEEESBCCBCTTEEEEEEEECCS-CEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EeC-CCcCcCCccccceEEEECCCCcEEEEEEcCC-CceEEEEechhhccccCCCeEEEEECCCCC
Confidence 997 99999875 368999999999999999994 899999998753221245789999987653
No 33
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=100.00 E-value=7.2e-45 Score=372.02 Aligned_cols=266 Identities=18% Similarity=0.170 Sum_probs=206.4
Q ss_pred ccCCCeEEEEEEEEEEEec--CCCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC
Q 009127 23 YGDSPYRFFTWKITYGDIY--PLGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY 100 (543)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~--~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p 100 (543)
.+.+.+++|+|++++..+. +||..+.+|+|||++|||+|+|++||+|+|+|+|.+ +++||||+++.+....||..
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~---~~~~~hg~~~~~~~~~~~~~ 109 (340)
T 2bw4_A 33 KTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPD---TNTLLHNIDFHAATGALGGG 109 (340)
T ss_dssp SSSCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCEEEEETTCEEEEEEEECT---TCCSCBCCEETTSCSGGGGG
T ss_pred cCCCcEEEEEEEEEEEEEEECCCCcEEEEEEECCCCCCCcEEEcCCCEEEEEEEeCC---CCCccCcceeCCcCCCCCCc
Confidence 3455789999999999976 569999999999999999999999999999999998 77999999887654444444
Q ss_pred C-CCCcCCCCCeEEEEEEeCCCcccceecCCch----hhhhccceeEEEEecCCCCC----CCCCCCCCceEEEeeeeee
Q 009127 101 G-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL----FHKAAGAFGGIRIWSRPRIP----VPFPPPAGDFTVLAGDWYR 171 (543)
Q Consensus 101 ~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~~~d~~~ 171 (543)
. + .|.||++++|+|+++ ++||||||||.. .|+.+||+|+|||++++..+ .+. .+|+|++|+++||++
T Consensus 110 ~~~--~i~PG~~~~y~~~~~-~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~-~~d~e~~l~l~D~~~ 185 (340)
T 2bw4_A 110 ALT--QVNPGEETTLRFKAT-KPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPL-TYDKIYYVGEQDFYV 185 (340)
T ss_dssp GGC--CBCTTEEEEEEEECC-SCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBCEECTTSCEE-CCSEEEEEEEEEECC
T ss_pred cce--EeCCCCEEEEEEECC-CCeEEEEEcCCCCchhhHHhCcCEEEEEEccCcCcccccCCCc-CcceeEEEeeeeeee
Confidence 3 4 499999999999995 799999999964 79999999999999865311 122 468999999999998
Q ss_pred c--cHHH----------HHHHhccCCCCCCCCeEEEcCCCCC---cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeE
Q 009127 172 S--NHYV----------LRRLLDSGHNLPFPDGLLINGRGWN---GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMK 236 (543)
Q Consensus 172 ~--~~~~----------~~~~~~~g~~~~~~~~~liNG~~~~---~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~ 236 (543)
. .... ....++. .....++.++|||+.+. .+.+++++|+++||+++|++.. .+..++++|.|+
T Consensus 186 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iNG~~~~~~~~~~l~v~~G~r~Rl~n~~~~~~-~~~~~i~gh~~~ 263 (340)
T 2bw4_A 186 PKDEAGNYKKYETPGEAYEDAVKA-MRTLTPTHIVFNGAVGALTGDHALTAAVGERVLVVHSQANRD-TRPHLIGGHGDY 263 (340)
T ss_dssp CBCTTSCBCCCCSHHHHHHHHHHH-HHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSC-BCEEEETCCEEE
T ss_pred ccccCCcccccccccccccchhhH-hhcCCCCEEEECCccCCccCCCceEcCCCCEEEEEECCCCCc-cceEEecCcceE
Confidence 3 1111 0000000 00235789999999841 2899999999887776665543 333458999999
Q ss_pred EEEEcCcccccc--ccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCC
Q 009127 237 LVEVEGSHTLQN--TYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSR 299 (543)
Q Consensus 237 via~DG~~~~p~--~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~ 299 (543)
|++ ||.++++. .++++.|+||||+||+|++++ +|.|+++|+...........++++|.+..
T Consensus 264 Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~~~~-pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 264 VWA-TGKFRNPPDLDQETWLIPGGTAGAAFYTFRQ-PGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EET-TCCTTSCCEEEESCCCBCTTEEEEEEEECCS-CEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EeC-CCcccCCccccceEEEeCCCceEEEEEECCC-CeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 997 99988653 479999999999999999995 89999999875311123467889998755
No 34
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=100.00 E-value=9.4e-41 Score=369.14 Aligned_cols=262 Identities=15% Similarity=0.160 Sum_probs=191.1
Q ss_pred CCeEEEEEEEEEEEe--cCCC------------eeE--EEEEE----------------CCcCCCceEEEecCCEEEEEE
Q 009127 26 SPYRFFTWKITYGDI--YPLG------------VKQ--QGILI----------------NGQFPGPQIDAVTNDNLIISV 73 (543)
Q Consensus 26 ~~~~~~~l~~~~~~~--~~~g------------~~~--~~~~~----------------Ng~~pgP~i~v~~Gd~v~i~~ 73 (543)
..+|+|-+-+.+..+ ++.| +.. ....| ++++|||+|||++||+|+|+|
T Consensus 4 ~~~r~y~i~a~e~~w~y~~~~~~~~~~~~~~~~~y~k~v~~~ytd~~f~~~~~~~~~~~~~~~pGP~I~~~~Gd~v~v~~ 83 (647)
T 1sdd_B 4 GNRKYYYIAAEEISWDYSKFVQSDDVDYVPEDTVYKKVVFRKYLDSTFTKLDPQGEYEEHLGILGPVIRAEVDDVIQVRF 83 (647)
T ss_dssp CCEEEEEEEEEEEEEETTTTC--------CCCCEEEEEEEEEESSTTCCSBCCCCSTTGGGTTSCCCEEEETTCEEEEEE
T ss_pred CCeEEEEEEEEEEEEeCCCCCcccccCccccCCeEeEEEEEEecCCcccccccCCCcccccCCcCceEEEeCCCEEEEEE
Confidence 567899999988886 3322 111 22334 347899999999999999999
Q ss_pred EECCCCCceeecCcccCCCCCCCCCCCC-C--------CCcCCCCCeEEEEEEeCCC-----cc----cceecCCch--h
Q 009127 74 YNYLREPFLISWNGLQQRRNSWQDGVYG-T--------TCPIPPGKNFTYVLQAKDQ-----IG----SYFYFPSFL--F 133 (543)
Q Consensus 74 ~N~l~~~~~iH~HG~~~~~~~~~DG~p~-t--------q~~i~PG~~~~y~f~~~~~-----~G----t~wYH~H~~--~ 133 (543)
+|.|+++++|||||+++. +.+||+|+ + ||+|+||++|+|+|+++++ +| |||||||.. .
T Consensus 84 ~N~l~~~~siH~HGl~~~--~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G~~c~T~wYHsH~~~~~ 161 (647)
T 1sdd_B 84 KNLASRPYSLHAHGLSYE--KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEK 161 (647)
T ss_dssp CCCSSSCBCCEEETCC-----------------------CCBCTTCCEECCEECCTTTSCCSSSCSEEEEEEECCSSHHH
T ss_pred EECCCCceEEecCcceeC--CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCCCCceEEEEccCCCCcc
Confidence 999999999999999875 57999997 6 8999999999999999754 57 999999984 7
Q ss_pred hhhccceeEEEEecCCCCCC--CCCCCCCceEEEee------eeeeccHHHHHHHhccCCCCCCCCeEEEcCCCCCcceE
Q 009127 134 HKAAGAFGGIRIWSRPRIPV--PFPPPAGDFTVLAG------DWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWNGYTF 205 (543)
Q Consensus 134 q~~~Gl~G~liV~~~~~~~~--~~~~~~~e~~l~~~------d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~p~~ 205 (543)
|+.+||+|+|||+++..... ..+..++|++|+++ ||+++.................++.++|||+.+..|.+
T Consensus 162 q~~~GL~G~lIV~~~~~~~~~~~~~~~~~e~~l~l~~~d~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~p~l 241 (647)
T 1sdd_B 162 DIHSGLIGPLLICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTRSWRRASSEVKNSHEFHAINGMIYNLPGL 241 (647)
T ss_dssp HHTTTCEEEEEEECTTSSCTTSCCCSSCCEEEEEEEEEEGGGSSCCC---------------CCCEEEEETTBSSCCCCC
T ss_pred cccccCccCEEEeeCCCcccccCCCCcceeEEEEEEeecCccccccccCcccccccCCcchhhcCceeccCCEecCCCCe
Confidence 99999999999999764321 11234689999999 67665432210000001112346899999998434899
Q ss_pred EEecCCEEEEEEEEcCCcc-eEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCC
Q 009127 206 TVEPGRTYRFRISNVGLTT-SINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTP 284 (543)
Q Consensus 206 ~v~~G~~~rlRiiN~~~~~-~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~ 284 (543)
++++|++|||||+|++... .|.||+|||.|+|++.||. .+|++.|+||||+||+|+++ .+|.|.++|+.....
T Consensus 242 ~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi~~d~~-----~~d~v~l~pg~r~~v~~~~~-~pG~w~~hch~~~h~ 315 (647)
T 1sdd_B 242 RMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQH-----QLGVWPLLPGSFKTLEMKAS-KPGWWLLDTEVGEIQ 315 (647)
T ss_dssp EEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCE-----EESSEEECTTEEEEEEEECC-SSEEEEEECCCHHHH
T ss_pred EEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEEecCCCc-----ccceEEECCCeEEEEEEEec-cceEeecccCccccc
Confidence 9999999999999999864 8999999999999998864 57999999999999999999 589999999864321
Q ss_pred CccceEEEEEec
Q 009127 285 RVLTTTAILHYS 296 (543)
Q Consensus 285 ~~~~~~~il~y~ 296 (543)
. ....+++.+.
T Consensus 316 ~-~Gm~~~~~V~ 326 (647)
T 1sdd_B 316 R-AGMQTPFLIV 326 (647)
T ss_dssp T-TTCEEEEEEE
T ss_pred c-cccccceeee
Confidence 1 2344555554
No 35
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=1.1e-39 Score=346.02 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=210.1
Q ss_pred CeEEEEEEEEEEEecC-CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC--CCceeecCcccCCCCCCCCCCCC-C
Q 009127 27 PYRFFTWKITYGDIYP-LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR--EPFLISWNGLQQRRNSWQDGVYG-T 102 (543)
Q Consensus 27 ~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~--~~~~iH~HG~~~~~~~~~DG~p~-t 102 (543)
.++.++|++.+..... +|....+|+|||++|||+|++++||+++|||+|.++ ..++|||||+. .+||++. +
T Consensus 162 ~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pgp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~-----~~DG~~~~~ 236 (447)
T 2dv6_A 162 KTVRIDLETVEVKGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGAT-----GPGGAAAFT 236 (447)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBBSCCCEEEETTCEEEEEEEECTTCSSCBCCEETTCC-----SGGGGGGGC
T ss_pred cEEEEEEEEEEEEEeccCCceeEEEEECCccCCCeEEecCCCEEEEEEEeCCCCceeEEEeecccc-----CCCCCCccE
Confidence 4567888887776655 688899999999999999999999999999999986 57899999984 3799886 4
Q ss_pred CCcCCCCCeEEEEEEeCCCcccceecCCch---hhhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHH----
Q 009127 103 TCPIPPGKNFTYVLQAKDQIGSYFYFPSFL---FHKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHY---- 175 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~---~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~---- 175 (543)
.|.||++++|.|++. ++||||||||.. .|+.+||+|+|+|+++... +.+++|++++++||++....
T Consensus 237 --~i~pG~~~~~~~~~~-~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~~~----P~~d~~~~~~~~~~~~~~~~~~~g 309 (447)
T 2dv6_A 237 --QTDPGEETVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGL----PQVDREFYVMQGEIYTVKSFGTSG 309 (447)
T ss_dssp --CBCTTCEEEEEEECC-SCEEEEEECCSSSHHHHHHTTCEEEEEEECTTCS----CCCSEEEEEEEEEECBSSCTTCCE
T ss_pred --EeCCCCEEEEEEECC-CCeEEEEEeCCCChHHHHhCCCEEEEEEeCCCCC----CCCCeeEEEEecccccCCcccccc
Confidence 399999999999995 799999999963 7899999999999986532 24588999999999875210
Q ss_pred ----HHHHHhccCCCCCCCCeEEEcCCCCCc---ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccccc
Q 009127 176 ----VLRRLLDSGHNLPFPDGLLINGRGWNG---YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQN 248 (543)
Q Consensus 176 ----~~~~~~~~g~~~~~~~~~liNG~~~~~---p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~ 248 (543)
...... + ..++.++|||+.+.. +.+++++|++|||||+|++....|+|||+||+|+||+.||.+++|.
T Consensus 310 ~~~~~~~~~~--~---~~~~~~~iNG~~~~~~~~~~~~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv~~dG~~~~~p 384 (447)
T 2dv6_A 310 EQEMDYEKLI--N---EKPEYFLFNGSVGSLTRSHPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSLGSVVSPP 384 (447)
T ss_dssp ECCBBHHHHH--T---TCCSEEEETTSTTCCCCCCCEEECTTCEEEEEEEEEESSCCEEEEEETCCEEEECGGGCSSSCC
T ss_pred cccCChHHhh--c---cCCCEEEECCcccCCCCCcceEECCCCEEEEEEEeCCCCceEeEEEcCcEEEEEEcCCcccCCC
Confidence 011111 1 246789999998411 4799999999999999999878999999999999999999998765
Q ss_pred --ccCeEEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecCCC
Q 009127 249 --TYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSNSR 299 (543)
Q Consensus 249 --~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~~~ 299 (543)
.+|++.|.||||++|+|+++ .+|.|+|+|+..... .....++++|.+..
T Consensus 385 ~~~~dtv~l~pg~r~~i~~~~~-~pG~~~~hch~~~h~-~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 385 LIGVQTVSVPPGGATIVDFKID-RAGRYILVDHALSRL-EHGLVGFLNVDGPK 435 (447)
T ss_dssp EEEESEEEECTTEEEEEEEECC-SCEEEEEEESSGGGG-GGTCCEEEEECSCS
T ss_pred cccccEEEECCCcEEEEEEECC-CCEEEEEEecCcCcc-ccCCEEEEEEeCCC
Confidence 48999999999999999999 589999999876442 23457899997654
No 36
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=100.00 E-value=8.3e-42 Score=343.45 Aligned_cols=211 Identities=13% Similarity=0.154 Sum_probs=159.6
Q ss_pred EEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-C--------CCcCCCCCeEEEEEEe
Q 009127 48 QGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-T--------TCPIPPGKNFTYVLQA 118 (543)
Q Consensus 48 ~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-t--------q~~i~PG~~~~y~f~~ 118 (543)
...++| ++|||+|||++||+|+|+|+|.|+++++|||||+++. +.+||++. + ||+|+||++|+|+|++
T Consensus 50 ~~~~~n-~~pGP~I~v~~Gd~v~v~~~N~l~~~~siH~HGl~~~--~~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~ 126 (306)
T 1sdd_A 50 PQSRTS-GLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYS--KFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWII 126 (306)
T ss_dssp CCCSSC-CSCCCCEEEETTCEEEEEEEECSSSCBCCEEESSCCC--TTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEEC
T ss_pred cccccC-CccCCEEEEeCCCEEEEEEEECCCCcccEeecceecc--cccCCCccCCCCcccccCCCccCCCCeEEEEEEe
Confidence 345678 6899999999999999999999999999999999843 34566553 2 7999999999999999
Q ss_pred CCCc---------ccceecCCchh--hhhccceeEEEEecCCCC---CCCCCCCCCceEEEeeeeeeccHHHHHHHhccC
Q 009127 119 KDQI---------GSYFYFPSFLF--HKAAGAFGGIRIWSRPRI---PVPFPPPAGDFTVLAGDWYRSNHYVLRRLLDSG 184 (543)
Q Consensus 119 ~~~~---------Gt~wYH~H~~~--q~~~Gl~G~liV~~~~~~---~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~g 184 (543)
++++ ||||||||... |+.+||+|+|||+++... +.+. ..|+|++|+++||..... .
T Consensus 127 ~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~~~~~~~~~~~~-~~d~e~~l~~~d~d~~~~--------~- 196 (306)
T 1sdd_A 127 SEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQK-MFEKQHVLMFAVFDESKS--------W- 196 (306)
T ss_dssp CGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECTTCBCTTSSBS-SSCCCCCCBCCEEETTSS--------S-
T ss_pred CCccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEccCCCCCccCCcC-cccceEEEEEEecccccc--------c-
Confidence 6433 79999999765 889999999999987431 1122 458899999999853211 0
Q ss_pred CCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCc-ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEE
Q 009127 185 HNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLT-TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYS 262 (543)
Q Consensus 185 ~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~-~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~d 262 (543)
....++.++|||+.+ ..|.+++++|++|||||+|++.. ..|.||||||.|.+ ||. .+|++.|.||||+|
T Consensus 197 -~~~~~~~~~ING~~~~~~p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~---dG~-----~~dtv~l~pger~~ 267 (306)
T 1sdd_A 197 -NQTSSLMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ---NHH-----KISAITLVSATSTT 267 (306)
T ss_dssp -SCCCCEEECSSSCCSSCCCCCCCCCC------BBCCCSSSCEECCBCSSTTCEE---TTE-----ECSCCCEETTCCBC
T ss_pred -ccCCCcceeeCCEecCCCcceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee---CCE-----EcceEEECCCcEEE
Confidence 112467899999984 23889999999999999999986 57889999999875 884 37999999999999
Q ss_pred EEEEeCCCCcceEEEEeec
Q 009127 263 VLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 263 v~v~~~~~~g~y~i~~~~~ 281 (543)
|+|+++ .+|.|+++|+..
T Consensus 268 v~~~~~-~pG~~~~hch~~ 285 (306)
T 1sdd_A 268 ANMTVS-PEGRWTIASLIP 285 (306)
T ss_dssp ---------CCCCCBCCST
T ss_pred EEEEcC-CCeEEEEEeCCh
Confidence 999998 689999999864
No 37
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=100.00 E-value=5.9e-41 Score=372.91 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=196.1
Q ss_pred CCCeEEEEEEEEEEEe--cCCCe----------------e-EEEEEE-----CC-----------cCCCceEEEecCCEE
Q 009127 25 DSPYRFFTWKITYGDI--YPLGV----------------K-QQGILI-----NG-----------QFPGPQIDAVTNDNL 69 (543)
Q Consensus 25 ~~~~~~~~l~~~~~~~--~~~g~----------------~-~~~~~~-----Ng-----------~~pgP~i~v~~Gd~v 69 (543)
...+|+|.|.+++..+ +++|. . ..++.| ++ ++|||+|||++||+|
T Consensus 130 ~g~~r~y~i~a~e~~wdyap~~~~~~~~~~~~~~~g~~y~k~~~~~y~~~~f~~~~~~~~~~~~l~~pGP~Ir~~~GD~v 209 (770)
T 2r7e_B 130 QKKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNI 209 (770)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCTTTTSSCCCCCCCCCCCEEEEECSSSCTTTTCCCCSTTTTCCSCCCCCCCCSSSCE
T ss_pred CCCEEEEEEEEEEEEEeecCCCcccccccccccccccceeeEEEEEeccCceeccccccccccccCCCCCeEEEEcCCEE
Confidence 4568999999999885 56653 1 223333 23 689999999999999
Q ss_pred EEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCC---------CcccceecCCchh--hhhcc
Q 009127 70 IISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKD---------QIGSYFYFPSFLF--HKAAG 138 (543)
Q Consensus 70 ~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~---------~~Gt~wYH~H~~~--q~~~G 138 (543)
+|+|+|.|+++++|||||+++..... ||++++||+|+||++|+|+|++++ ++||||||||.+. |+.+|
T Consensus 210 ~v~~~N~l~~~~siH~HG~~~~~~~~-dG~~~~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh~~~~~q~~~G 288 (770)
T 2r7e_B 210 MVTFRNQASRPYSFYSSLISYEEDQR-QGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSG 288 (770)
T ss_dssp EEEEECCSSSCCCCCBTTCCCCCCSS-SCTTTTSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCCSSSSHHHHTS
T ss_pred EEEEEECCCCCcceeecccccccccC-CCCcCccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeeccCCcHHHHhCC
Confidence 99999999999999999999876643 699888999999999999999974 7999999999875 89999
Q ss_pred ceeEEEEecCCCCCC--CCCCCCCceEEEeeee------eeccHHHHHHHhc-cCC----C---CCCCCeEEEcCCCC-C
Q 009127 139 AFGGIRIWSRPRIPV--PFPPPAGDFTVLAGDW------YRSNHYVLRRLLD-SGH----N---LPFPDGLLINGRGW-N 201 (543)
Q Consensus 139 l~G~liV~~~~~~~~--~~~~~~~e~~l~~~d~------~~~~~~~~~~~~~-~g~----~---~~~~~~~liNG~~~-~ 201 (543)
|+|+|||+++..... ....+++|++|+++++ +++.. +..+.. ... . ....+.++|||+.+ .
T Consensus 289 L~G~liV~~~~~~~~~~~~~~~d~E~vl~~~~~de~~swy~~~~--~~~~~~~p~~~~~~d~~~~~~~~~~~ING~~~~~ 366 (770)
T 2r7e_B 289 LIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIFDETKSWYFTEN--MERNCRAPCNIQMEDPTFKENYRFHAINGYIMDT 366 (770)
T ss_dssp CCEEEEEECSTTSCSSSCCCCSSEEEECCCCEECCSSSSCTTGG--GSSCSCCSSCCCSSSSSSTTTSCEECTTSCTTTT
T ss_pred ceeeEEECCCcccccccCCCccceEEEEEEeecCccccchhccc--hhhcccCccccccCCccccccCCccccCCccCCC
Confidence 999999999764211 1124578999887654 33321 111110 000 0 01235689999985 3
Q ss_pred cceEEEecCCEEEEEEEEcCCc-ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEee
Q 009127 202 GYTFTVEPGRTYRFRISNVGLT-TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSS 280 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~-~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~ 280 (543)
.+.+++++|++|||||+|++.. ..|+||||||.|+|++.||. .+|++.|.||||++|+|+++ .+|.|.++|+.
T Consensus 367 ~~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~-----~~Dtv~l~Pg~~~~v~~~ad-~pG~w~~hcH~ 440 (770)
T 2r7e_B 367 LPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY-----KMALYNLYPGVFETVEMLPS-KAGIWRVECLI 440 (770)
T ss_dssp CCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC-----EESEEECCTTCCCEEEECCS-SCBCCCBCCCS
T ss_pred CCCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc-----eeeEEEECCCeEEEEEEEeC-CCCceEEEecc
Confidence 5789999999999999999864 47999999999999999974 67999999999999999999 68999999986
Q ss_pred c
Q 009127 281 R 281 (543)
Q Consensus 281 ~ 281 (543)
.
T Consensus 441 ~ 441 (770)
T 2r7e_B 441 G 441 (770)
T ss_dssp H
T ss_pred c
Confidence 4
No 38
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=3.1e-37 Score=342.66 Aligned_cols=218 Identities=17% Similarity=0.178 Sum_probs=169.4
Q ss_pred cCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCC-----CCC-CCCcCCCCCeEEEEEEeCCCcc-----
Q 009127 55 QFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDG-----VYG-TTCPIPPGKNFTYVLQAKDQIG----- 123 (543)
Q Consensus 55 ~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG-----~p~-tq~~i~PG~~~~y~f~~~~~~G----- 123 (543)
.+|||+||+++||+|+|+|+|.++++++|||||+++. .+++|| ++. +||+|.||++|+|+|++++++|
T Consensus 448 g~pGP~Ir~~~GD~v~v~~~N~l~~~~siHwHGl~~~-~~~~DG~~~~G~~~~~~~~I~PG~t~tY~f~~~~~agPg~~d 526 (742)
T 2r7e_A 448 GILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDV-RPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSD 526 (742)
T ss_dssp CSCCCCCCCBTTCEEECCEECCSSSCBCCEETTCSEE-CCTTCSCCSSSCSSTTTSCCBSSCEECCEEECCSTTSCCSSS
T ss_pred CCCCCeEEEECCCEEEEEEEeCCCCCcCEEecccccC-CcccccccCCCCcccccccCCCCCeEEEEEEeccccCCcccC
Confidence 5799999999999999999999999999999999874 456664 565 7999999999999999975554
Q ss_pred ----cceecCCch--hhhhccceeEEEEecCCCCC-CC-CCCCCCceEEEeeeeeeccH----HHHHHHhcc-CCC-CC-
Q 009127 124 ----SYFYFPSFL--FHKAAGAFGGIRIWSRPRIP-VP-FPPPAGDFTVLAGDWYRSNH----YVLRRLLDS-GHN-LP- 188 (543)
Q Consensus 124 ----t~wYH~H~~--~q~~~Gl~G~liV~~~~~~~-~~-~~~~~~e~~l~~~d~~~~~~----~~~~~~~~~-g~~-~~- 188 (543)
|||||||.. .|+.+||+|+|||+++.... .. ....|+|++|++++|..+.+ ..+..+... ... ..
T Consensus 527 ~~~gT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~d~E~~l~~~~fde~~~wy~~~~~~~~~~~p~~v~~~~ 606 (742)
T 2r7e_A 527 PRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLED 606 (742)
T ss_dssp CSCCCCEEECCSSSSSTGGGSCCEECCCBCCCSCCCCCCSSCCSCCCEEEECBCCGGGSSCSHHHHHHHSSSSSCSCCCC
T ss_pred CCceEEEEecCcchhhhhhccceeeEEEcCccccccccCcCCCCceEEEEeeccccccccccccchhhcccCchhccccc
Confidence 999999976 47899999999999875321 11 11458999999975432211 112222110 000 00
Q ss_pred -----CCCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCc-ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEE
Q 009127 189 -----FPDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLT-TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYS 262 (543)
Q Consensus 189 -----~~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~-~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~d 262 (543)
....++|||+.+....+++++||+|||||+|+++. ..|.|||+||.|+|+ +..+|++.|.||||++
T Consensus 607 ~~~~~~~~~~~ING~~~~~~~l~v~~Ge~vr~rliN~g~~~~~h~~HlhGh~f~v~--------~~~~Dtv~l~Pg~~~~ 678 (742)
T 2r7e_A 607 PEFQASNIMHSINGYVFDSLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHK--------MVYEDTLTLFPFSGET 678 (742)
T ss_dssp HHHHGGGCCBCTTTTCSSCCCCCCCSSCCCEEEEEECSSCCCCCCCEESSSCCCCB--------SSSBCSSCCCCCSSEE
T ss_pred ccccccCceeeecCcCCCCCcEEEeCCCEEEEEEEeCCCCcceEEEEEcCcEEEEe--------ccceeEEEECCCcEEE
Confidence 01247899998523348999999999999998763 468999999999986 5778999999999999
Q ss_pred EEEEeCCCCcceEEEEeecc
Q 009127 263 VLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 263 v~v~~~~~~g~y~i~~~~~~ 282 (543)
|+|+++ .+|.|.++|+...
T Consensus 679 v~~~ad-~pG~w~~hcH~~~ 697 (742)
T 2r7e_A 679 VFMSME-NPGLWILGCHNSD 697 (742)
T ss_dssp CCEECC-CCCCSCCEECCCS
T ss_pred EEEEcC-CCeEEEEEeCCch
Confidence 999998 6899999998754
No 39
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.97 E-value=1.9e-30 Score=258.45 Aligned_cols=228 Identities=16% Similarity=0.153 Sum_probs=165.7
Q ss_pred CCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 190 PDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 190 ~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
...+++||+.. .|.|+++.|+++++++.|.... .+.+|+||.. ..+.||.+. .+...|.|||++++.++++
T Consensus 54 ~~~~~~ng~~p-gP~i~~~~Gd~v~v~~~N~~~~-~~~iH~HG~~--~~~~DG~p~----~~~~~i~PG~~~~y~f~~~- 124 (288)
T 3gdc_A 54 FKGWSYNGRIP-GPTLWAREGDALRIHFTNAGAH-PHTIHFHGVH--RATMDGTPG----IGAGSIAPGQSFTYEFDAT- 124 (288)
T ss_dssp EEEEEETTBSS-CCEEEEETTCEEEEEEEECSSS-CBCCEESSCC--CGGGSCCTT----STTCSBCTTCEEEEEEECC-
T ss_pred EEEEEECCccC-CCcEEEeCCCEEEEEEEeCCCC-cccEEecccc--ccccCCCCC----ccceeECCCCEEEEEEEcC-
Confidence 46899999974 6899999999999999999875 7889999975 456788763 2445789999999999997
Q ss_pred CCcceEEEEeeccC-CC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCccccc
Q 009127 270 APQDYYIVVSSRFT-PR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIK 347 (543)
Q Consensus 270 ~~g~y~i~~~~~~~-~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 347 (543)
.+|.||++++.... .+ .....+.|.+..... .+..
T Consensus 125 ~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~--------~~~~----------------------------------- 161 (288)
T 3gdc_A 125 PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEG--------RPPA----------------------------------- 161 (288)
T ss_dssp SCEEEEEECCCSSHHHHHHTTCEEEEEEECSSC--------CCCC-----------------------------------
T ss_pred CCccEEEEecCcchHHHHhCcCeEEEEEeCCcc--------CCCC-----------------------------------
Confidence 79999999986421 01 122334444432210 0000
Q ss_pred ceEEEEEecc---CCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEE
Q 009127 348 ISRTITLANS---APYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEI 424 (543)
Q Consensus 348 ~~~~~~~~~~---~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 424 (543)
++++.+... .........|.|||+.|.. . ...++++.|++++|
T Consensus 162 -d~e~~l~~~d~~~~~g~~~~~~~iNG~~~~~-----~----------------------------~~~l~v~~Ge~vr~ 207 (288)
T 3gdc_A 162 -DDEMVMVMNGYNTDGGDDNEFYSVNGLPFHF-----M----------------------------DFPVKVKQHELVRI 207 (288)
T ss_dssp -SEEEEEEEEEECCSSTTCCSEEEETTSTTHH-----H----------------------------HSCEEEETTCCEEE
T ss_pred -cceEEEEEeeEecCCCCCcceEEECcccccc-----c----------------------------CcccccCCCCEEEE
Confidence 011111000 0000112358999987631 0 01245788999999
Q ss_pred EEEeCCCC--CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhh
Q 009127 425 VFQNWEDT--VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQ 502 (543)
Q Consensus 425 ~i~N~~~~--~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~He 502 (543)
.|.|.+.. .||||||||.|+|++.+.. +..+.++||+.|+|++++.|+|++++||.|+||||+++|+
T Consensus 208 ~l~N~g~~~~~H~fHlhG~~f~v~~~g~~-----------~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~~~H~ 276 (288)
T 3gdc_A 208 HLINVLEYDPINSFHIHGNFFHYYPTGTM-----------LTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKTEFA 276 (288)
T ss_dssp EEEECCCSSSEEEEEETTCCEEEEETTCC-----------SSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSSHHHH
T ss_pred EEEeCCCCCcceeEEEcCCEEEEEcCCCc-----------cCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecChHHH
Confidence 99999754 5999999999999975431 2235799999999999999999999999999999999999
Q ss_pred hcccEEEEEEec
Q 009127 503 YLGQQFYLRVYS 514 (543)
Q Consensus 503 d~GMm~~~~V~~ 514 (543)
+.|||+.|+|.+
T Consensus 277 ~~GM~~~~~V~~ 288 (288)
T 3gdc_A 277 ELGWMGFFEVSA 288 (288)
T ss_dssp TTTCEEEEEEEC
T ss_pred hcCCCEEEEEeC
Confidence 999999999964
No 40
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.96 E-value=5.3e-29 Score=251.09 Aligned_cols=246 Identities=16% Similarity=0.160 Sum_probs=169.0
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEE-EEEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKL-VEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..+++||+.. .|.|+++.|+++++|+.|.... .+.+|+||....- .+.||.+. +....|.|||+++..++++
T Consensus 23 ~~~~~ng~~p-GP~i~~~~Gd~v~v~~~N~l~~-~~siH~HG~~~~~~~~~DG~p~----~t~~~i~PG~~~~y~f~~~- 95 (318)
T 3g5w_A 23 HTFAFNGQVP-APLIHVMEGDDVTVNVTNMTTL-PHTIHWHGMLQRGTWQSDGVPH----ATQHAIEPGDTFTYKFKAE- 95 (318)
T ss_dssp EEEEETTBSS-CCEEEEETTCEEEEEEEECSSS-CBCCEEETCCCTTCGGGSCCBT----TTBCCBCTTCEEEEEEECC-
T ss_pred EEEEECCccC-CceEEEeCCCEEEEEEEeCCCC-ceeEEecCcCCCCCcccCCCcc----cccccCCCCCEEEEEEEcC-
Confidence 5799999964 7999999999999999999875 6889999986542 35788753 2346789999999999998
Q ss_pred CCcceEEEEeeccCCCc--cceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCccccc
Q 009127 270 APQDYYIVVSSRFTPRV--LTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIK 347 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~~--~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 347 (543)
.+|+||.+++.....+. ....+.|.+..... .+.+.....+....+. .+...... .....
T Consensus 96 ~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~---~~~~~~~d~e~~l~l~-----dw~~~~~~-~~~~~--------- 157 (318)
T 3g5w_A 96 PAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNP---LPIEKTVTKDYILMLS-----DWVSSWAN-KPGEG--------- 157 (318)
T ss_dssp SCEEEEEECCSSHHHHHHHSCCEEEEEEECSSC---CHHHHTCCEEEEEEEE-----EECGGGTT-CTTCC---------
T ss_pred CCEEEEEEccCChhhhhccCCCEEEEEEcCCCc---ccccccccceeEEEEE-----eecccccc-ccccC---------
Confidence 69999999986321110 12334444432211 0000000000000000 01000000 00000
Q ss_pred ceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEE
Q 009127 348 ISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQ 427 (543)
Q Consensus 348 ~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~ 427 (543)
.. .......|.|||+.|.. ...+.++.|++++|+|.
T Consensus 158 --------~~--~~~~~d~~~ING~~~~~----------------------------------~~~l~v~~G~~vrlrli 193 (318)
T 3g5w_A 158 --------GI--PGDVFDYYTINAKSFPE----------------------------------TQPIRVKKGDVIRLRLI 193 (318)
T ss_dssp --------CC--TTCCCCEEEETTBCBTS----------------------------------SCCEEECTTCEEEEEEE
T ss_pred --------CC--CCCcCcEEEEcCcCCCC----------------------------------CccEEeCCCCEEEEEEE
Confidence 00 00012358999987621 01256789999999999
Q ss_pred eCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhh----
Q 009127 428 NWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQY---- 503 (543)
Q Consensus 428 N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed---- 503 (543)
|.+...||||||||+|+|++++++. +.+|.++||+.|+|++++.|+|+++|||.|+||||+++|++
T Consensus 194 N~~~~~h~~hlhGh~f~vi~~dG~~----------~~~p~~~dtv~l~pger~~v~~~a~~pG~w~~hCH~~~H~~~g~~ 263 (318)
T 3g5w_A 194 GAGDHVHAIHTHGHISQIAFKDGFP----------LDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDK 263 (318)
T ss_dssp ECSSSCEEEEETTSCEEEEEETTEE----------EEEEEEESEEEECTTCEEEEEEECCSCSEEEEEESSGGGSCBTTB
T ss_pred eCCCceEEEEECCcEEEEEecCCcc----------cCCCccccEEEECCCCEEEEEEECCCCeeEEEEeccHHHhhccCc
Confidence 9988899999999999999986532 22467899999999999999999999999999999999998
Q ss_pred --cccEEEEEEecC
Q 009127 504 --LGQQFYLRVYSP 515 (543)
Q Consensus 504 --~GMm~~~~V~~p 515 (543)
.|||..++|...
T Consensus 264 ~~~Gm~~~i~~~g~ 277 (318)
T 3g5w_A 264 PDGGIMTTIEYEEV 277 (318)
T ss_dssp SSCBSEEEEEETTT
T ss_pred CCCCCEEEEEECCC
Confidence 689999999654
No 41
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.96 E-value=1.2e-28 Score=251.24 Aligned_cols=245 Identities=16% Similarity=0.153 Sum_probs=165.2
Q ss_pred CCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEE---cCccccccccCeEEEcCCCeEEEEEE
Q 009127 190 PDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEV---EGSHTLQNTYAALDIHLGQTYSVLVT 266 (543)
Q Consensus 190 ~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~---DG~~~~p~~~~~v~l~pgeR~dv~v~ 266 (543)
...+++||+.. .|.|++++|+++|+|++|.... .+.+|.|| +.+.+. ||.+. ++...|.||||+++.|+
T Consensus 23 ~~~~~~NG~~p-GP~I~v~~Gd~v~v~v~N~l~~-~~siH~HG--~~~~~~~~~DGvp~----vtq~~I~PG~~~~y~f~ 94 (339)
T 2zwn_A 23 YKVFGFNGQVP-GPLIHVQEGDDVIVNVTNNTSL-PHTIHWHG--VHQKGTWRSDGVPG----VTQQPIEAGDSYTYKFK 94 (339)
T ss_dssp EEEEEETTBSS-CCEEEEETTCEEEEEEEEESSS-CBCCEEET--CCCTTCGGGSCCBT----TTBCCBCTTCEEEEEEE
T ss_pred EEEEEECCccC-CCeEEEECCCEEEEEEEECCCC-CccEEeCC--CCcCCCcccCCCCc----cccCccCCCCeEEEEEE
Confidence 35799999953 7999999999999999999975 45555555 555554 99763 34567999999999999
Q ss_pred eCCCCcceEEEEeeccCCC-c-cceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcc
Q 009127 267 MDQAPQDYYIVVSSRFTPR-V-LTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYG 344 (543)
Q Consensus 267 ~~~~~g~y~i~~~~~~~~~-~-~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 344 (543)
++ .+|+||++++.....+ . ....+.+.+..... ..++.....+....+. ++..... ..+...
T Consensus 95 ~~-~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~~---~~~~~~~d~e~~l~l~-----d~~~~~~-~~~~~~------ 158 (339)
T 2zwn_A 95 AD-RIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQP---LPIEKRVTKDVIMMMS-----TWESAVA-DKYGEG------ 158 (339)
T ss_dssp CC-SCEEEEEECCSSHHHHTTTSCCEEEEEEECSSC---CTTGGGCSEEEEEEEE-----EECGGGT-TCTTCC------
T ss_pred CC-CCEEEEEEecCCchhhhhcCCceEeEEecCCCc---ccccccCCceEEEEee-----heecccc-cccCCC------
Confidence 98 6999999987532111 1 12233333322211 0111100000000000 0111000 000000
Q ss_pred cccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEE
Q 009127 345 MIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEI 424 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 424 (543)
. . .......|.|||+.|.. ...+.++.|++++|
T Consensus 159 --g--------~---~~~~~~~~~ING~~~~~----------------------------------~~~~~v~~G~~vrl 191 (339)
T 2zwn_A 159 --G--------T---PMNVADYFSVNAKSFPL----------------------------------TQPLRVKKGDVVKI 191 (339)
T ss_dssp --C--------S---TTSCCCEEEETTBCTTS----------------------------------SCCEEECTTCEEEE
T ss_pred --C--------C---CccccceEEEccccCCC----------------------------------cccEEECCCCEEEE
Confidence 0 0 00012358899986521 11256788999999
Q ss_pred EEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhh---
Q 009127 425 VFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWAR--- 501 (543)
Q Consensus 425 ~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H--- 501 (543)
+|.|.+...||||||||+|+|++.++.. +.+|.++||+.|++++++.|+|++|+||.|++|||+++|
T Consensus 192 rliN~~~~~h~~hlhGh~f~vi~~DG~~----------~~~p~~~dtv~l~pg~r~~v~~~~~~pG~w~~hch~~~H~~~ 261 (339)
T 2zwn_A 192 RFFGAGGGIHAMHSHGHDMLVTHKDGLP----------LDSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHVDTHVTA 261 (339)
T ss_dssp EEEECSSSCEEEEETTCCEEEEEETTEE----------EEEEEEESEEEECTTCEEEEEEECCSCSEEEEEECCGGGSCB
T ss_pred EEEeCCCceEEEEECCcEEEEEEeCCee----------cCCCcEEEEEEECCCCEEEEEEEeCCCeeEEEEEechhhccc
Confidence 9999988899999999999999996532 223678999999999999999999999999999999999
Q ss_pred ---hhcccEEEEEEecC
Q 009127 502 ---QYLGQQFYLRVYSP 515 (543)
Q Consensus 502 ---ed~GMm~~~~V~~p 515 (543)
++.|||+.++|...
T Consensus 262 ~~~~~~gm~a~l~~~g~ 278 (339)
T 2zwn_A 262 GGKHPGGPITVIEYDGV 278 (339)
T ss_dssp TTBSSCSSEEEEEETTS
T ss_pred ccccCCCcEEEEEECCC
Confidence 88999999999654
No 42
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=99.95 E-value=6e-28 Score=238.88 Aligned_cols=222 Identities=13% Similarity=0.064 Sum_probs=162.9
Q ss_pred EEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCC--
Q 009127 193 LLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQA-- 270 (543)
Q Consensus 193 ~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~-- 270 (543)
...||+.. .|.|+++.|+++++++.|... ....+|.||..+.. ..||.+ +..-.|.||+++...++++++
T Consensus 27 ~~~ng~~p-GP~i~~~~Gd~v~v~~~N~~~-~~~siH~HG~~~~~-~~DG~~-----~t~~~i~pG~~~~Y~f~~~~~~~ 98 (276)
T 3kw8_A 27 EKGKASVP-GPLIEVNEGDTLHIEFTNTMD-VRASLHVHGLDYEI-SSDGTA-----MNKSDVEPGGTRTYTWRTHKPGR 98 (276)
T ss_dssp STTCCBSS-CCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG-GGSCCT-----TTTCSBCTTCEEEEEEECCCCEE
T ss_pred eccCCccc-CCeEEEECCCEEEEEEEECCC-CCccEeecCcccCC-ccCCCc-----CCcCCCCCCCEEEEEEEcCCccc
Confidence 34688864 799999999999999999976 47889999987654 478876 233568999999999999752
Q ss_pred ----------CcceEEEEeeccCC----C-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCC
Q 009127 271 ----------PQDYYIVVSSRFTP----R-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRP 335 (543)
Q Consensus 271 ----------~g~y~i~~~~~~~~----~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (543)
+|.||.+++..... + .....+.|....... +
T Consensus 99 ~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~---------~------------------------- 144 (276)
T 3kw8_A 99 RDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGD---------V------------------------- 144 (276)
T ss_dssp CTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC---------C-------------------------
T ss_pred cccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEecCCC---------c-------------------------
Confidence 57899998753211 1 112233333321110 0
Q ss_pred CCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEe
Q 009127 336 NPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMA 415 (543)
Q Consensus 336 ~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 415 (543)
..++++.+.. ..|.|||+.|.. ...+.
T Consensus 145 -----------~~drE~~l~l--------~~~~iNG~~~~~----------------------------------~p~i~ 171 (276)
T 3kw8_A 145 -----------LPDATHTIVF--------NDMTINNRKPHT----------------------------------GPDFE 171 (276)
T ss_dssp -----------CCSEEEEEEE--------ETTEETTCCTTC----------------------------------CCCEE
T ss_pred -----------ccccceEEEe--------cccccceecccC----------------------------------CCCEE
Confidence 0123333322 127999987631 11256
Q ss_pred cCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEec---Ccccc
Q 009127 416 ANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALD---NVGMW 492 (543)
Q Consensus 416 ~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad---npG~w 492 (543)
++.|++++|+|.|.+.+.||||||||.|++++.| .+... ...+.++||+.|+|++++.++|+++ |||.|
T Consensus 172 v~~G~~vri~l~N~~~~~Hp~HlHG~~f~v~~~G--~~~~p------~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w 243 (276)
T 3kw8_A 172 ATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTG--ILTGP------DDPSRVIDNKITGPADSFGFQIIAGEGVGAGAW 243 (276)
T ss_dssp EETTCEEEEEEEEESSCCEEEEETTCCEESSSSS--SCCST------TCCCCEESEEEECTTCEEEEEEETTTTTCSEEE
T ss_pred EecCCEEEEEEecCCCcceeEEEccceeEEeccC--ccCCC------cccccCCccEEeCCCceEEEEEEeccCCCCCeE
Confidence 7899999999999988899999999999997643 23211 1124689999999999999999997 89999
Q ss_pred eeeecchhhhhcccEEEEEEecCCC
Q 009127 493 NIRSENWARQYLGQQFYLRVYSPAN 517 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~p~~ 517 (543)
+||||+++|++.|||+.|.|.+++.
T Consensus 244 ~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 244 MYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp EEEECSHHHHHTTCEEEEEEECTTS
T ss_pred EEECCCchHhhCCCeEEEEEeCCCC
Confidence 9999999999999999999998864
No 43
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.95 E-value=1.3e-27 Score=238.73 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=155.8
Q ss_pred EcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCC-----
Q 009127 195 INGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ----- 269 (543)
Q Consensus 195 iNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~----- 269 (543)
.||..- .|.|+++.|+++++++.|.... ...+|.||..+. -+.||.++ ..-.|.|||++...++++.
T Consensus 51 ~~gt~P-GP~i~~~~GD~v~v~~~N~l~~-~~siH~HG~~~~-~~~DG~~~-----~~~~i~PG~t~~Y~~~~~~~~~~~ 122 (299)
T 3t9w_A 51 GGATVP-GPVLEMWEGDTLEIDLVNTTDR-VLSLHPHGVDYD-VNSDGTLM-----NGSAVMPGQTRRYTWRSHVGYRRA 122 (299)
T ss_dssp TCCBSS-CCCEEEETTCEEEEEEEECSSS-CBCCEESSSBCC-GGGSCCTT-----TTCCBCTTCEEEEEEBCCCCEECT
T ss_pred CCCCcc-CceEEEECCeEEEEEEEECCCC-CccEEeCCcccC-CccCCCcc-----ccCccCCCCeEEEEEEeecccccC
Confidence 367653 6999999999999999999875 678899997654 25688653 2225789999999988752
Q ss_pred -------CCcceEEEEeeccCCC-----ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCC
Q 009127 270 -------APQDYYIVVSSRFTPR-----VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNP 337 (543)
Q Consensus 270 -------~~g~y~i~~~~~~~~~-----~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p 337 (543)
.+|.||.+++...... .....+.|...... .
T Consensus 123 ~~~~~~~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~---------~---------------------------- 165 (299)
T 3t9w_A 123 DGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQG---------D---------------------------- 165 (299)
T ss_dssp TSCEECCCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT---------C----------------------------
T ss_pred CCcCCCCCceeEEEecCCcccccchhhhcccccceEEEeccc---------c----------------------------
Confidence 4688999886532111 01122333222110 0
Q ss_pred CCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecC
Q 009127 338 QGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAAN 417 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 417 (543)
...++++.+.. ..|.+|++.+. + ...+.++
T Consensus 166 --------~~~d~e~~l~~--------~~~~~Ng~~~~--~--------------------------------~p~l~v~ 195 (299)
T 3t9w_A 166 --------LLPKRQFTVVF--------NDMMINNRAHH--D--------------------------------APTFEAN 195 (299)
T ss_dssp --------CCCSEEEEEEE--------ETTEETTCCTT--C--------------------------------CCEEEEE
T ss_pred --------cCccccceeee--------eeeeecCcccc--c--------------------------------cccceec
Confidence 01133443332 12778887552 1 1235678
Q ss_pred CCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEE---EEecCccccee
Q 009127 418 FREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIY---MALDNVGMWNI 494 (543)
Q Consensus 418 ~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~ir---f~adnpG~w~~ 494 (543)
.|++++|+|.|.+...||||||||.|+|+..+..... ...+.++||+.|.|++...++ |+++|||.|+|
T Consensus 196 ~Ge~Vr~~liN~~~~~HpfHlHGh~F~v~~~g~~~~~--------~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~~ 267 (299)
T 3t9w_A 196 LGERVEWIAIGHGSNFHTFHLHGHRWLDNRTGMRTSE--------YDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMY 267 (299)
T ss_dssp TTCEEEEEEEEESSCCCEEEETTCCEESSSSSSCCST--------TCCCCEESEEECCTTCEEEEEEETTTTTCSEEEEE
T ss_pred CCCEEEEEEEeccccceeeeEecceEEEEecccccCC--------cCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEEE
Confidence 9999999999999899999999999999887653222 223568999999999766554 45689999999
Q ss_pred eecchhhhhcccEEEEEEecCCC
Q 009127 495 RSENWARQYLGQQFYLRVYSPAN 517 (543)
Q Consensus 495 HCHil~Hed~GMm~~~~V~~p~~ 517 (543)
||||++|++.|||+.|+|.+.+.
T Consensus 268 HCHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 268 HCHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp EECSHHHHHTTCEEEEEEECTTS
T ss_pred EcCCHHHHhcCCeEEEEEECCCC
Confidence 99999999999999999988763
No 44
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.94 E-value=1.3e-26 Score=233.38 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=154.2
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCC------------
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ------------ 269 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~------------ 269 (543)
.|.|+++.|++++++|.|.... ...+|.||..+.. +.||.+. ..-.|.||+++...+++..
T Consensus 41 GP~i~~~~Gd~v~v~~~N~l~~-~~siH~HG~~~~~-~~dG~~~-----~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~ 113 (313)
T 3tas_A 41 GPLIELNEGDTLHIEFENTMDV-PVSLHVHGLDYEI-SSDGTKQ-----SRSDVEPGGTRTYTWRTHVPGRRADGTWRAG 113 (313)
T ss_dssp CCCEEEETTCEEEEEEEECSSS-CBCCEESSSBCCG-GGSCSTT-----TTCCBCTTCEEEEEEBCCCCEECTTSCEECC
T ss_pred CCeEEEECCCEEEEEEEECCCC-CccEeecCCcCCc-cCCCCcc-----ccCCcCCCCEEEEEEEeccCCccccccccCC
Confidence 6999999999999999999875 6788999976542 4688653 2235899999999887652
Q ss_pred CCcceEEEEeeccCCC-----ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcc
Q 009127 270 APQDYYIVVSSRFTPR-----VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYG 344 (543)
Q Consensus 270 ~~g~y~i~~~~~~~~~-----~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 344 (543)
..|.||.+++.....+ .....+.|.+.....
T Consensus 114 ~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~-------------------------------------------- 149 (313)
T 3tas_A 114 SAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGD-------------------------------------------- 149 (313)
T ss_dssp SCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC--------------------------------------------
T ss_pred CceEEEEeecCcccccchhhhhccccCceEeecccc--------------------------------------------
Confidence 3588899886532211 012223333321100
Q ss_pred cccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEE
Q 009127 345 MIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEI 424 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 424 (543)
...++++.+.. ..|++|+..+.. ...+.++.|++++|
T Consensus 150 -~~~d~e~~l~~--------~d~t~Ng~~~~~----------------------------------~~~l~v~~Ge~vr~ 186 (313)
T 3tas_A 150 -VLPDRTHTIVF--------NDMTINNRPAHT----------------------------------GPDFEATVGDRVEF 186 (313)
T ss_dssp -BCCSEEEEEEE--------ETTEETTCCTTC----------------------------------CCCEEEETTCEEEE
T ss_pred -ccccccceeec--------cchhcccCCccc----------------------------------ccccccccCCEEEE
Confidence 01133443332 127888875421 11256788999999
Q ss_pred EEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe---cCcccceeeecchhh
Q 009127 425 VFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMAL---DNVGMWNIRSENWAR 501 (543)
Q Consensus 425 ~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a---dnpG~w~~HCHil~H 501 (543)
+|.|.+.+.||||||||.|+|+..+.... ....+.++||+.|.|++.+.+++.+ +|||.|+||||+++|
T Consensus 187 ~liN~g~~~hpfHlHGh~F~v~~~~~~~~--------~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~~HCHi~~H 258 (313)
T 3tas_A 187 VMITHGEYYHTFHLHGHRWADNRTGMLTG--------PDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSH 258 (313)
T ss_dssp EEEEESSCCEEEEETTCCEESSTTSSCCS--------TTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHH
T ss_pred EEecccccceeeeecCCeeEEEEECCccC--------CCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEEEEeCChHH
Confidence 99999989999999999999988764321 1234679999999999998887764 689999999999999
Q ss_pred hhcccEEEEEEecCCCC
Q 009127 502 QYLGQQFYLRVYSPANS 518 (543)
Q Consensus 502 ed~GMm~~~~V~~p~~~ 518 (543)
++.|||+.|+|.+++..
T Consensus 259 ~~~GM~~~f~V~~~d~~ 275 (313)
T 3tas_A 259 SDMGMVGLFLVKKPDGT 275 (313)
T ss_dssp HHTTCEEEEEEECTTCC
T ss_pred HHCCCeEEEEEECCCCC
Confidence 99999999999988753
No 45
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.90 E-value=3.4e-25 Score=222.45 Aligned_cols=233 Identities=14% Similarity=0.083 Sum_probs=138.7
Q ss_pred eEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccc----ccccCeEEEcCCCeEEEEEEe
Q 009127 192 GLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTL----QNTYAALDIHLGQTYSVLVTM 267 (543)
Q Consensus 192 ~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~----p~~~~~v~l~pgeR~dv~v~~ 267 (543)
..++||.. .|.|++++|+++++|+.|... ..+.+|.||..+.. +.||.+.. +...+...|.||||++..+++
T Consensus 51 ~~~~n~~p--GP~I~v~~Gd~v~v~~~N~l~-~~~siH~HGl~~~~-~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~ 126 (306)
T 1sdd_A 51 QSRTSGLL--GPTLYAEVGDIMKVHFKNKAH-KPLSIHAQGIKYSK-FSEGASYSDHTLPMEKMDDAVAPGQEYTYEWII 126 (306)
T ss_dssp CCSSCCSC--CCCEEEETTCEEEEEEEECSS-SCBCCEEESSCCCT-TTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEEC
T ss_pred ccccCCcc--CCEEEEeCCCEEEEEEEECCC-CcccEeecceeccc-ccCCCccCCCCcccccCCCccCCCCeEEEEEEe
Confidence 35689888 899999999999999999876 47888888887432 57887652 223335689999999999999
Q ss_pred CCCC---------cceEEEEeeccCC---CccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCC
Q 009127 268 DQAP---------QDYYIVVSSRFTP---RVLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRP 335 (543)
Q Consensus 268 ~~~~---------g~y~i~~~~~~~~---~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (543)
++.+ |+||++++..... ..+.+ ++|........ ..+.+.. .+ +.+..-+.
T Consensus 127 ~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G-~liV~~~~~~~-~~~~~~~--~d--------~e~~l~~~------ 188 (306)
T 1sdd_A 127 SEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIG-PLLICKKGTLT-EDGTQKM--FE--------KQHVLMFA------ 188 (306)
T ss_dssp CGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCE-EEEEECTTCBC-TTSSBSS--SC--------CCCCCBCC------
T ss_pred CCccCCCCCCCCceEEEEeccCCchhhhccCceE-EEEEccCCCCC-ccCCcCc--cc--------ceEEEEEE------
Confidence 7643 6999999753211 12223 33333221100 0000000 00 00000000
Q ss_pred CCCCCCCcccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEe
Q 009127 336 NPQGSYHYGMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMA 415 (543)
Q Consensus 336 ~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 415 (543)
.+.-.. .-.......+.|||+.|.. .| .+.
T Consensus 189 ---------------d~d~~~-~~~~~~~~~~~ING~~~~~--~p--------------------------------~l~ 218 (306)
T 1sdd_A 189 ---------------VFDESK-SWNQTSSLMYTVNGYVNGT--MP--------------------------------DIT 218 (306)
T ss_dssp ---------------EEETTS-SSSCCCCEEECSSSCCSSC--CC--------------------------------CCC
T ss_pred ---------------eccccc-ccccCCCcceeeCCEecCC--Cc--------------------------------ceE
Confidence 000000 0000112357888876521 11 134
Q ss_pred cCCCcEEEEEEEeCCCC--CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccce
Q 009127 416 ANFREFVEIVFQNWEDT--VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWN 493 (543)
Q Consensus 416 ~~~g~~v~~~i~N~~~~--~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 493 (543)
++.|++++|+|.|.+.. .||||+|||.|++ .| .++||+.|.|++.+.|+|++++||.|+
T Consensus 219 v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~----dG---------------~~~dtv~l~pger~~v~~~~~~pG~~~ 279 (306)
T 1sdd_A 219 VCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ----NH---------------HKISAITLVSATSTTANMTVSPEGRWT 279 (306)
T ss_dssp CCCC------BBCCCSSSCEECCBCSSTTCEE----TT---------------EECSCCCEETTCCBC--------CCCC
T ss_pred EcCCCEEEEEEEeCCCCCccEEEEECCcEeee----CC---------------EEcceEEECCCcEEEEEEEcCCCeEEE
Confidence 67899999999999764 6999999999986 11 358999999999999999999999999
Q ss_pred eeecchhhhhcccEEEEEEecC
Q 009127 494 IRSENWARQYLGQQFYLRVYSP 515 (543)
Q Consensus 494 ~HCHil~Hed~GMm~~~~V~~p 515 (543)
||||+++|++.|||+.|+|.+.
T Consensus 280 ~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 280 IASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp CBCCSTTTGGGTCBCCC-----
T ss_pred EEeCChHHHhcCCeEEEEEecC
Confidence 9999999999999999999753
No 46
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.88 E-value=5.2e-22 Score=219.28 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=148.5
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccc----cccCeEEEcCCCeEEEEEEeCCC-----Cc
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQ----NTYAALDIHLGQTYSVLVTMDQA-----PQ 272 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p----~~~~~v~l~pgeR~dv~v~~~~~-----~g 272 (543)
.|.|++++|+++++|+.|.... .+.+|.||.... .+.||.+... ..+....|.|||+++..+++++. +|
T Consensus 68 GP~I~~~~Gd~v~v~~~N~l~~-~~siH~HGl~~~-~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G 145 (647)
T 1sdd_B 68 GPVIRAEVDDVIQVRFKNLASR-PYSLHAHGLSYE-KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPG 145 (647)
T ss_dssp CCCEEEETTCEEEEEECCCSSS-CBCCEEETCC----------------------CCBCTTCCEECCEECCTTTSCCSSS
T ss_pred CceEEEeCCCEEEEEEEECCCC-ceEEecCcceeC-CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCC
Confidence 7999999999999999999875 678888887764 4789987421 22335679999999999999864 57
Q ss_pred ----ceEEEEeeccCCC---ccceEEEEEecCCCCCCCCCCCCCCCCcccccccccc-ccccccCCCCCCCCCCCCCCcc
Q 009127 273 ----DYYIVVSSRFTPR---VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQAR-SIRWNLTASGPRPNPQGSYHYG 344 (543)
Q Consensus 273 ----~y~i~~~~~~~~~---~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~-~~~~~l~~~~~~~~p~~~~~~~ 344 (543)
+||.+++.....+ .+.+.-|+.-.+.... ....|.. ..+....+.... ...+.+. ....
T Consensus 146 ~~c~T~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~-~~~~~~~-~~e~~l~l~~~d~~~~w~~~-----~~~~------ 212 (647)
T 1sdd_B 146 SACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDK-ETNMPVD-MREFVLLFMVFDEKKSWYYD-----KKPT------ 212 (647)
T ss_dssp CSEEEEEEECCSSHHHHHTTTCEEEEEEECTTSSCT-TSCCCSS-CCEEEEEEEEEEGGGSSCCC---------------
T ss_pred CCceEEEEccCCCCcccccccCccCEEEeeCCCccc-ccCCCCc-ceeEEEEEEeecCccccccc-----cCcc------
Confidence 9999998632111 2233223333222110 0001110 011110110000 0001110 0000
Q ss_pred cccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEE
Q 009127 345 MIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEI 424 (543)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 424 (543)
..+.... .........+.|||+.|. .| .+.++.|++++|
T Consensus 213 -----~~~~~~~-~~~~~~~~~~~iNG~~~~---~p--------------------------------~l~v~~G~~vrl 251 (647)
T 1sdd_B 213 -----RSWRRAS-SEVKNSHEFHAINGMIYN---LP--------------------------------GLRMYEQEWVRL 251 (647)
T ss_dssp -----------------CCCEEEEETTBSSC---CC--------------------------------CCEEETTCEEEE
T ss_pred -----cccccCC-cchhhcCceeccCCEecC---CC--------------------------------CeEEcCCCEEEE
Confidence 0000000 000111345889998761 11 134678999999
Q ss_pred EEEeCCC--CCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhh
Q 009127 425 VFQNWED--TVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQ 502 (543)
Q Consensus 425 ~i~N~~~--~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~He 502 (543)
+|.|.+. +.||||+|||.|+|++.+ +.++||+.|.|++++.|+|++++||.|+||||+++|+
T Consensus 252 rliN~~~~~~~h~~hlhG~~f~vi~~d----------------~~~~d~v~l~pg~r~~v~~~~~~pG~w~~hch~~~h~ 315 (647)
T 1sdd_B 252 HLLNLGGSRDIHVVHFHGQTLLENGTQ----------------QHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQ 315 (647)
T ss_dssp EEEECCCTTCCEEEEETTCCEEECSSS----------------CEEESSEEECTTEEEEEEEECCSSEEEEEECCCHHHH
T ss_pred EEEeCCCCCcceeEEEcCcEEEEecCC----------------CcccceEEECCCeEEEEEEEeccceEeecccCccccc
Confidence 9999875 479999999999998652 3478999999999999999999999999999999999
Q ss_pred hcccEEEEEEecCCC
Q 009127 503 YLGQQFYLRVYSPAN 517 (543)
Q Consensus 503 d~GMm~~~~V~~p~~ 517 (543)
+.|||+.|.|.++++
T Consensus 316 ~~Gm~~~~~V~~~~c 330 (647)
T 1sdd_B 316 RAGMQTPFLIVDREC 330 (647)
T ss_dssp TTTCEEEEEEECTTC
T ss_pred ccccccceeeecccc
Confidence 999999999976543
No 47
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=99.87 E-value=7e-22 Score=200.14 Aligned_cols=246 Identities=16% Similarity=0.110 Sum_probs=163.2
Q ss_pred CeEEEcCCCCCcceEEEecCCEEEEEEEEcCCc-ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCC
Q 009127 191 DGLLINGRGWNGYTFTVEPGRTYRFRISNVGLT-TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ 269 (543)
Q Consensus 191 ~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~-~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 269 (543)
..+++||+.. .|.+++++|+++++|++|.... ..+.+|+||.. +.||... ...|.|||++++.++++
T Consensus 59 ~~~~~ng~~p-gP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~----~~dG~~~------~~~i~PG~~~~y~f~~~- 126 (327)
T 1kbv_A 59 RYWTFDGDVP-GRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAAT----GQGGGAA------ATFTAPGRTSTFSFKAL- 126 (327)
T ss_dssp EEEEETTBSS-CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGTT------TTCBCTTEEEEEEEECC-
T ss_pred EEEEECCccC-CCeEEEeCCCEEEEEEEECCCCCCceeeEeCccc----cCCCCCc------ceeecCCCEEEEEEECC-
Confidence 5799999953 7999999999999999999753 47888998863 4687642 12489999999999998
Q ss_pred CCcceEEEEeeccC-CC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCccccc
Q 009127 270 APQDYYIVVSSRFT-PR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMIK 347 (543)
Q Consensus 270 ~~g~y~i~~~~~~~-~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 347 (543)
.+|+||++++.... .+ .....+.+.+.... ++|. .+....+-. -++...... .. . +...
T Consensus 127 ~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~-----~~p~---~d~e~~l~~---~d~~~~~~~--~~-~-----g~~~ 187 (327)
T 1kbv_A 127 QPGLYIYHCAVAPVGMHIANGMYGLILVEPKE-----GLPK---VDKEFYIVQ---GDFYTKGKK--GA-Q-----GLQP 187 (327)
T ss_dssp SCEEEEEECCCSSHHHHHHTTCEEEEEEECTT-----CCCC---CSEEEEEEE---EEECBSSCT--TC-C-----EEEC
T ss_pred CCeEEEEEeCCCChhhhhhcceEEEEEEecCC-----CCCC---CceEEEEEe---eeeeccCcc--cc-c-----cccc
Confidence 48999999875211 01 11223333333321 1221 111100000 011111000 00 0 0000
Q ss_pred ceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEEE
Q 009127 348 ISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVFQ 427 (543)
Q Consensus 348 ~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~ 427 (543)
.+ +.... .. ....+.|||+.+... ....++++.|++++|+|.
T Consensus 188 ~~----~~~~~-~~-~~~~~~iNG~~~~~~--------------------------------~~~~l~v~~G~~vRlRli 229 (327)
T 1kbv_A 188 FD----MDKAV-AE-QPEYVVFNGHVGALT--------------------------------GDNALKAKAGETVRMYVG 229 (327)
T ss_dssp BC----HHHHH-HT-CCSEEEETTSTTTTS--------------------------------GGGCEEEETTEEEEEEEE
T ss_pred cC----hhHhc-cC-CCceEEEcCcccCCC--------------------------------CceeEEeCCCCEEEEEEE
Confidence 00 00000 01 123578898865210 012356788999999999
Q ss_pred eCCC-CCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhh-hcc
Q 009127 428 NWED-TVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQ-YLG 505 (543)
Q Consensus 428 N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~He-d~G 505 (543)
|.+. ..|+||||||+|+||+.+++.. .|.++|++.|.+|+.+.|.|++++||.|++|||+++|. ..|
T Consensus 230 N~~~~~~~~~~l~Gh~f~vi~~DG~~~-----------~p~~~d~l~l~pGer~dv~v~~~~pG~y~l~~h~~~~~~~~g 298 (327)
T 1kbv_A 230 NGGPNLVSSFHVIGEIFDKVYVEGGKL-----------INENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKG 298 (327)
T ss_dssp EEESSCCEEEEEETCCBSEEEGGGSSC-----------EECSBSEEEECTTEEEEEEEEECSCEEEEEEESSTHHHHHSS
T ss_pred CCCCCCceeEEEeCCEEEEEEcCCCcC-----------CCCceeEEEECCCCEEEEEEEeCCCeEEEEEeccccccccCC
Confidence 9864 6799999999999999976522 25789999999999999999999999999999999995 889
Q ss_pred cEEEEEEecCC
Q 009127 506 QQFYLRVYSPA 516 (543)
Q Consensus 506 Mm~~~~V~~p~ 516 (543)
|++.++|....
T Consensus 299 ~~a~l~~~g~~ 309 (327)
T 1kbv_A 299 ALGQLKVEGAE 309 (327)
T ss_dssp CEEEEEEESCC
T ss_pred cEEEEEECCCC
Confidence 99999997654
No 48
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=99.87 E-value=3.7e-21 Score=196.22 Aligned_cols=259 Identities=12% Similarity=0.088 Sum_probs=156.3
Q ss_pred CCeEEEcCCCCCcceEEEecCCEEEEEEEEcCC-cceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC
Q 009127 190 PDGLLINGRGWNGYTFTVEPGRTYRFRISNVGL-TTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 190 ~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~-~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
...+++||+.. .|.|++++|+++|+|+.|... ...|.+++++... +.||.. . . .|.|||++++.++++
T Consensus 59 ~~~~~~ng~~p-gP~i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~---~~~~~~---~--~--~i~PG~~~~y~~~~~ 127 (340)
T 2bw4_A 59 IHAMTFNGSVP-GPLMVVHENDYVELRLINPDTNTLLHNIDFHAATG---ALGGGA---L--T--QVNPGEETTLRFKAT 127 (340)
T ss_dssp EEEEEETTBSS-CCEEEEETTCEEEEEEEECTTCCSCBCCEETTSCS---GGGGGG---G--C--CBCTTEEEEEEEECC
T ss_pred EEEEEECCCCC-CCcEEEcCCCEEEEEEEeCCCCCccCcceeCCcCC---CCCCcc---c--e--EeCCCCEEEEEEECC
Confidence 46799999953 699999999999999999873 2456777777542 223322 2 1 399999999999998
Q ss_pred CCCcceEEEEeeccC--CC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC-cc
Q 009127 269 QAPQDYYIVVSSRFT--PR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYH-YG 344 (543)
Q Consensus 269 ~~~g~y~i~~~~~~~--~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~-~~ 344 (543)
.+|+||++++.... .+ .....+.+.+...... ....+.....+.+..+. .-.+.+. ..+.+.+. +.
T Consensus 128 -~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~~-~~~~~~p~~~d~e~~l~---l~D~~~~-----~~~~g~~~~~~ 197 (340)
T 2bw4_A 128 -KPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGL-KDEKGQPLTYDKIYYVG---EQDFYVP-----KDEAGNYKKYE 197 (340)
T ss_dssp -SCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBCE-ECTTSCEECCSEEEEEE---EEEECCC-----BCTTSCBCCCC
T ss_pred -CCeEEEEEcCCCCchhhHHhCcCEEEEEEccCcCc-ccccCCCcCcceeEEEe---eeeeeec-----cccCCcccccc
Confidence 49999999986321 11 0122232322222110 00000000011100000 0011110 00000000 00
Q ss_pred c-c-cceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEE
Q 009127 345 M-I-KISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFV 422 (543)
Q Consensus 345 ~-~-~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 422 (543)
. . ...... .. . .......|.|||+.|.... ...++++.|+++
T Consensus 198 ~~~~~~~~~~--~~-~-~~~~~~~~~iNG~~~~~~~--------------------------------~~~l~v~~G~r~ 241 (340)
T 2bw4_A 198 TPGEAYEDAV--KA-M-RTLTPTHIVFNGAVGALTG--------------------------------DHALTAAVGERV 241 (340)
T ss_dssp SHHHHHHHHH--HH-H-HTTCCSEEEETTSTTTTSG--------------------------------GGCEEEETTCEE
T ss_pred cccccccchh--hH-h-hcCCCCEEEECCccCCccC--------------------------------CCceEcCCCCEE
Confidence 0 0 000000 00 0 0001235889998762100 123567889999
Q ss_pred EEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCC-CcceeEEeCCCCEEEEEEEecCcccceeeecch-h
Q 009127 423 EIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDT-VARSTTQVYPRSWTAIYMALDNVGMWNIRSENW-A 500 (543)
Q Consensus 423 ~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p-~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil-~ 500 (543)
+|++.|.+...|++|+|||.|+|+. +++ +. ..| .++||+.|.+|+.+.|.|++++||.|+||||++ +
T Consensus 242 Rl~n~~~~~~~~~~~i~gh~~~Vi~-dG~-~~---------~~p~~~~dtv~l~pGer~~v~v~~~~pG~y~~~~h~~~~ 310 (340)
T 2bw4_A 242 LVVHSQANRDTRPHLIGGHGDYVWA-TGK-FR---------NPPDLDQETWLIPGGTAGAAFYTFRQPGVYAYVNHNLIE 310 (340)
T ss_dssp EEEEEESSSCBCEEEETCCEEEEET-TCC-TT---------SCCEEEESCCCBCTTEEEEEEEECCSCEEEEEEESSHHH
T ss_pred EEEECCCCCccceEEecCcceEEeC-CCc-cc---------CCccccceEEEeCCCceEEEEEECCCCeeeEEEcCchHH
Confidence 9988888778899999999999986 322 21 112 257999999999999999999999999999999 6
Q ss_pred hhhcccEEEEEEecCC
Q 009127 501 RQYLGQQFYLRVYSPA 516 (543)
Q Consensus 501 Hed~GMm~~~~V~~p~ 516 (543)
|++.|||+.|+|....
T Consensus 311 h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 311 AFELGAAGHFKVTGEW 326 (340)
T ss_dssp HHTTSCEEEEEEESCC
T ss_pred HHhCCCEEEEEECCCC
Confidence 9999999999998654
No 49
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.86 E-value=7.4e-23 Score=227.67 Aligned_cols=245 Identities=12% Similarity=0.077 Sum_probs=153.0
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCC---------CCc
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ---------APQ 272 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~---------~~g 272 (543)
.|.|+++.|+++++++.|.... .+.+|.||..+..-.-||.+- ....|.||++++..+++++ .+|
T Consensus 198 GP~Ir~~~GD~v~v~~~N~l~~-~~siH~HG~~~~~~~~dG~~~-----~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~G 271 (770)
T 2r7e_B 198 GPYIRAEVEDNIMVTFRNQASR-PYSFYSSLISYEEDQRQGAEP-----RKNFVKPNETKTYFWKVQHHMAPTKDEFDCK 271 (770)
T ss_dssp CCCCCCCSSSCEEEEEECCSSS-CCCCCBTTCCCCCCSSSCTTT-----TSSCCCSSCEEEEECCCCSSSSCCSSCCSEE
T ss_pred CCeEEEEcCCEEEEEEEECCCC-CcceeecccccccccCCCCcC-----ccCccCCCCeEEEEEEecCccCCccCCCCCe
Confidence 6999999999999999999874 778888887655443357642 2246899999999999885 579
Q ss_pred ceEEEEeeccCCC-ccceEEEEEecCCCCCCCCCCCCCCCCcccccccccc---c--cccccCCCCCCCCCCCCCCcccc
Q 009127 273 DYYIVVSSRFTPR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQAR---S--IRWNLTASGPRPNPQGSYHYGMI 346 (543)
Q Consensus 273 ~y~i~~~~~~~~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~---~--~~~~l~~~~~~~~p~~~~~~~~~ 346 (543)
.||.+++.....+ .....|.|.+...........+.....+....+.... . +..++.... ..|.. ...
T Consensus 272 t~wYHsh~~~~~q~~~GL~G~liV~~~~~~~~~~~~~~~d~E~vl~~~~~de~~swy~~~~~~~~~--~~p~~-~~~--- 345 (770)
T 2r7e_B 272 AWAYSSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIFDETKSWYFTENMERNC--RAPCN-IQM--- 345 (770)
T ss_dssp EEEECCCSSSSHHHHTSCCEEEEEECSTTSCSSSCCCCSSEEEECCCCEECCSSSSCTTGGGSSCS--CCSSC-CCS---
T ss_pred eEEeeccCCcHHHHhCCceeeEEECCCcccccccCCCccceEEEEEEeecCccccchhccchhhcc--cCccc-ccc---
Confidence 9999987643211 1122333333322211000000000000000000000 0 000000000 00000 000
Q ss_pred cceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEE
Q 009127 347 KISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVF 426 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i 426 (543)
.+. ........|.|||+.|. + ...+.++.|++++|+|
T Consensus 346 -~d~--------~~~~~~~~~~ING~~~~--~--------------------------------~~~l~v~~Ge~vr~rl 382 (770)
T 2r7e_B 346 -EDP--------TFKENYRFHAINGYIMD--T--------------------------------LPGLVMAQDQRIRWYL 382 (770)
T ss_dssp -SSS--------SSTTTSCEECTTSCTTT--T--------------------------------CCCCCCCSSSCEEEEC
T ss_pred -CCc--------cccccCCccccCCccCC--C--------------------------------CCCeEEeCCCEEEEEE
Confidence 000 00111224667776541 0 1124577899999999
Q ss_pred EeCCCC--CCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhhhhc
Q 009127 427 QNWEDT--VQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYL 504 (543)
Q Consensus 427 ~N~~~~--~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~Hed~ 504 (543)
.|.+.. .||||||||.|+|++.++ .++||+.|+|++++.|+|++|+||.|+||||+++|++.
T Consensus 383 iN~g~~~~~H~fHlhGh~f~Vv~~dg----------------~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~~ 446 (770)
T 2r7e_B 383 LSMGSNENIHSIHFSGHVFTVRKKEE----------------YKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHA 446 (770)
T ss_dssp CCCCSSSCCCEEEBSSCCEECCSSSC----------------CEESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHTT
T ss_pred EeCCCCcceEEEEEcCCEEEEEecCC----------------ceeeEEEECCCeEEEEEEEeCCCCceEEEecccccccc
Confidence 998743 799999999999987642 28999999999999999999999999999999999999
Q ss_pred ccEEEEEEecCCC
Q 009127 505 GQQFYLRVYSPAN 517 (543)
Q Consensus 505 GMm~~~~V~~p~~ 517 (543)
|||..|.|.+.++
T Consensus 447 GM~~~~~V~s~~C 459 (770)
T 2r7e_B 447 GMSTLFLVYSNKC 459 (770)
T ss_dssp BCCCCCCBCCSSC
T ss_pred ccccccccccccc
Confidence 9999999965554
No 50
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=99.84 E-value=4.9e-20 Score=187.34 Aligned_cols=261 Identities=10% Similarity=0.020 Sum_probs=150.0
Q ss_pred CCeEEEcCCCCCcceEEEecCCEEEEEEEEcCCc-ceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC
Q 009127 190 PDGLLINGRGWNGYTFTVEPGRTYRFRISNVGLT-TSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 190 ~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~-~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
...+++||+.. .|.|++++|+++++|+.|.+.. ..|.+++++.. ..||.. +. . .|.||+++++.++++
T Consensus 52 ~~~~~~ng~~p-gP~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~----~~~~~~--~~--~--~i~PG~~~~y~f~~~ 120 (333)
T 1mzy_A 52 LQAMTFDGSIP-GPLMIVHEGDYVELTLINPPENTMPHNIDFHAAT----GALGGG--GL--T--LINPGEKVVLRFKAT 120 (333)
T ss_dssp EEEEEETTBSS-CCEEEEETTCEEEEEEEECTTCCSCBCCEETTSC----SGGGGG--GG--C--CBCTTEEEEEEEECC
T ss_pred EEEEEECCccC-CCcEEecCCCEEEEEEEECCCCcccccceecCCC----CCCCCC--ce--e--EeCCCCEEEEEEECC
Confidence 35799999964 7999999999999999999642 23445555432 122221 11 2 399999999999998
Q ss_pred CCCcceEEEEeecc---CCC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC-c
Q 009127 269 QAPQDYYIVVSSRF---TPR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYH-Y 343 (543)
Q Consensus 269 ~~~g~y~i~~~~~~---~~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~-~ 343 (543)
.+|.||++++... ..+ .....+.+....... ...+.......+.+..+. .. .+.+.. ...+.+. +
T Consensus 121 -~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~~~-~~~~~~~p~~~d~e~~l~-l~--D~~~~~-----~~~g~~~~~ 190 (333)
T 1mzy_A 121 -RAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDG-LKDHEGKPVRYDTVYYIG-ES--DHYIPK-----DEDGTYMRF 190 (333)
T ss_dssp -SCEEEEEECCCSTTHHHHHHHTTCEEEEEEECTTC-CBCTTSCBCCCSEEEEEE-EE--EECCCB-----CTTSCBCCC
T ss_pred -CCEEEEEeecCCcccchhhhhCCCEEEEEEccCcC-ccccccCCCccchheeee-ee--eeccCc-----ccccccccc
Confidence 5999999998642 011 112233333322211 000000000011110000 00 111100 0000000 0
Q ss_pred ccccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEE
Q 009127 344 GMIKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVE 423 (543)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 423 (543)
........-.+.. . .......|.|||+.+..+. ...++++.|++++
T Consensus 191 ~~~~~~~~~~~~~-~-~~~~~~~~~ING~~~~~~~--------------------------------~~~l~v~~Ger~R 236 (333)
T 1mzy_A 191 SDPSEGYEDMVAV-M-DTLIPSHIVFNGAVGALTG--------------------------------EGALKAKVGDNVL 236 (333)
T ss_dssp SSHHHHHHHHHHH-H-TTTCCSEEEETTSTTTTSG--------------------------------GGCEEEETTCEEE
T ss_pred ccccccccchhHH-h-hccCCcEEEECCcccccCC--------------------------------CcceEecCCCEEE
Confidence 0000000000000 0 0011235889998642110 1125678899988
Q ss_pred EEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCC-cceeEEeCCCCEEEEEEEecCcccceeeecchhhh
Q 009127 424 IVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTV-ARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQ 502 (543)
Q Consensus 424 ~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~-~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~He 502 (543)
|+..|.+...|++++|+|.|.|++ + |.+. ..|. ++||+.|.+|+.+.|.|.+++||.|+||||+++|+
T Consensus 237 l~n~~~~~~~~~h~i~~h~~~Vi~-d-G~~~---------~~p~~~~dtv~l~pGer~~v~v~a~~pG~y~~~ch~~~h~ 305 (333)
T 1mzy_A 237 FVHSQPNRDSRPHLIGGHGDLVWE-T-GKFH---------NAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHNLIEA 305 (333)
T ss_dssp EEEEESSSCBCEEEETCCEEEEET-T-CCTT---------SCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSHHHH
T ss_pred EEECCCCCccccEEECCCCeEEEe-C-Cccc---------CCCccCcceEEECCCceEEEEEEcCCCEEEEEecChhhhH
Confidence 887776555556667888899887 3 3221 1122 68999999999999999999999999999999997
Q ss_pred -hcccEEEEEEecCC
Q 009127 503 -YLGQQFYLRVYSPA 516 (543)
Q Consensus 503 -d~GMm~~~~V~~p~ 516 (543)
+.|||+.|+|....
T Consensus 306 ~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 306 VHKGATAHVLVEGEW 320 (333)
T ss_dssp HTTCCEEEEEEESCC
T ss_pred hhCCCEEEEEEcCCC
Confidence 99999999998654
No 51
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.81 E-value=2.3e-19 Score=189.61 Aligned_cols=247 Identities=15% Similarity=0.108 Sum_probs=163.7
Q ss_pred CCeEEEcCCCCCcceEEEecCCEEEEEEEEcCC-cceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC
Q 009127 190 PDGLLINGRGWNGYTFTVEPGRTYRFRISNVGL-TTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 190 ~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~-~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
...+++||+.. .|.++++.|++++||+.|... ...+.+|+||+. ..||... ...|.||+++++.|+++
T Consensus 48 ~~~~~~ng~~p-gp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~----~~dG~~~------~~~i~pg~~~~y~f~~~ 116 (442)
T 2zoo_A 48 YVFWSFGETVP-GSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT----GPGGGAE------SSFTAPGHTSTFNFKAL 116 (442)
T ss_dssp EEEEEETTBSS-CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGGG------GCCBCTTCEEEEEEECC
T ss_pred EEEEEECCcCC-CCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCc----CCCCCCc------cEEECCCCEEEEEEEcC
Confidence 35799999964 799999999999999999964 247889999975 3577542 23589999999999998
Q ss_pred CCCcceEEEEeeccC-CC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCcccc
Q 009127 269 QAPQDYYIVVSSRFT-PR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYHYGMI 346 (543)
Q Consensus 269 ~~~g~y~i~~~~~~~-~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 346 (543)
.+|.||++++.... .+ .....+.|.+.... ++|. .+.+..+. .. .+....... .+ +
T Consensus 117 -~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~-----~~~~---~d~e~~l~-l~--d~~~~~~~~--~~------~-- 174 (442)
T 2zoo_A 117 -NPGLYIYHCATAPVGMHIANGMYGLILVEPKE-----GLAP---VDREYYLV-QG--DFYTKGEFG--EA------G-- 174 (442)
T ss_dssp -SCEEEEEECCCSSHHHHHHTTCEEEEEEECTT-----CCCC---CSEEEEEE-EE--EECBSSCTT--CC------E--
T ss_pred -CCeEEEEecCCCChHHHHhCccEEEEEEeCCC-----CCCC---CCceEEEE-ee--eeeccCccc--cc------c--
Confidence 69999999953210 01 11234444444322 1111 11110000 00 011110000 00 0
Q ss_pred cceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEEEEE
Q 009127 347 KISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVEIVF 426 (543)
Q Consensus 347 ~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i 426 (543)
...+.+... .......+.|||+.+... ....+.++.|++++|+|
T Consensus 175 --~~~~~~~~~--~~~~~~~~liNG~~~~~~--------------------------------~~~~l~v~~G~~vrlrl 218 (442)
T 2zoo_A 175 --LQPFDMAKA--IDEDADYVVFNGSVGSTT--------------------------------DENSLTAKVGETVRLYI 218 (442)
T ss_dssp --EECBCHHHH--HTTCCSEEEETTSTTTTS--------------------------------GGGCEEEETTCEEEEEE
T ss_pred --cccCChhHh--ccCCCCEEEECCCcCCCC--------------------------------CCCceEeCCCCEEEEEE
Confidence 000000000 001123578898754210 00125677899999999
Q ss_pred EeCC-CCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccceeeecchhh-hhc
Q 009127 427 QNWE-DTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWNIRSENWAR-QYL 504 (543)
Q Consensus 427 ~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H-ed~ 504 (543)
.|.+ ...|+||+|||.|.|++.+++.. .|.+.|++.|.+++.+.|.|++++||.|++|||.+.| .+.
T Consensus 219 iN~~~~~~~~~~i~g~~~~vi~~DG~~~-----------~p~~~~~~~l~pg~r~~v~v~~~~~G~y~~~~~~~~~~~~~ 287 (442)
T 2zoo_A 219 GNGGPNLVSSFHVIGEIFDTVYVEGGSL-----------KNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHSIFRAFNK 287 (442)
T ss_dssp EEEESSCCEEEEEETCCBSEEEGGGSSC-----------EECSBSEEEECTTEEEEEEEECCSCEEEEEEESSTHHHHTT
T ss_pred EeCCCCCceeeEEcCCEEEEEecCCccC-----------CCccceEEEECCCeeEEEEEEcCCCCeEEEEeccccccccc
Confidence 9976 36799999999999999976421 2568899999999999999999999999999999999 599
Q ss_pred ccEEEEEEecCC
Q 009127 505 GQQFYLRVYSPA 516 (543)
Q Consensus 505 GMm~~~~V~~p~ 516 (543)
|||+.++|...+
T Consensus 288 g~~a~l~v~~~~ 299 (442)
T 2zoo_A 288 GALAMLKVEGPD 299 (442)
T ss_dssp SCEEEEEEESCC
T ss_pred CceEEEEecCCC
Confidence 999999997655
No 52
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=99.78 E-value=3.5e-18 Score=173.94 Aligned_cols=260 Identities=14% Similarity=0.138 Sum_probs=153.9
Q ss_pred CCeEEEcCCCCCcceEEEecCCEEEEEEEEcCC-cceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeC
Q 009127 190 PDGLLINGRGWNGYTFTVEPGRTYRFRISNVGL-TTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMD 268 (543)
Q Consensus 190 ~~~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~-~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 268 (543)
...+++||+.. .|.|+++.|+++++|+.|... ...|.++++++.. .||.. +. . .|.||+++++.++++
T Consensus 53 ~~~~~~ng~~p-gP~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~----~~~~~--~~--~--~i~pG~~~~y~f~~~ 121 (336)
T 1oe1_A 53 LQAMTFNGSMP-GPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATG----ALGGA--KL--T--NVNPGEQATLRFKAD 121 (336)
T ss_dssp EEEEEETTBSS-CCCEEEETTCEEEEEEEECTTCCSCBCCEETTSCS----GGGGG--GG--C--CBCTTEEEEEEEECC
T ss_pred EEEEEECCccC-CCeEEEcCCCEEEEEEEcCCCCCccccceECCCCC----CCCCc--ce--E--EeCCCCEEEEEEECC
Confidence 35799999953 799999999999999999875 2467889998752 23332 11 1 399999999999998
Q ss_pred CCCcceEEEEeeccC--CC-ccceEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC-cc
Q 009127 269 QAPQDYYIVVSSRFT--PR-VLTTTAILHYSNSRRGVSGPIPGGPTTEIAWSLNQARSIRWNLTASGPRPNPQGSYH-YG 344 (543)
Q Consensus 269 ~~~g~y~i~~~~~~~--~~-~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~-~~ 344 (543)
.+|+||++++.... .+ .....+.+.+..... ...+.+.....+....+. .. .+.+.. ...+.+. +.
T Consensus 122 -~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~~-~~~~~~~~~~~D~e~~l~-~~--D~~~~~-----~~~g~~~~~~ 191 (336)
T 1oe1_A 122 -RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDG-LKDPQGKPLHYDRAYTIG-EF--DLYIPK-----GPDGKYKDYA 191 (336)
T ss_dssp -SCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTC-CBCTTSCBCCCSEEEEEE-EE--EECCCB-----CTTSSBCCCS
T ss_pred -CCeEEEEecCCCCchhHHHhCCCeEEEEEecCcC-CcccccCcccCCceeEee-ee--eeeecc-----ccCCceeecc
Confidence 59999999986321 01 112233333322211 001111110011110000 00 011100 0000000 00
Q ss_pred c-ccceEEEEEeccCCCcCCeEEEEEcCeeecCCCCchhhhcccCCCcccccCCCCCCCCCCCCccceeEEecCCCcEEE
Q 009127 345 M-IKISRTITLANSAPYMNGKQRYAINSVSFVPADTPLKLADYFKIPGVFTLGSMPTSPNWGNAYLQTSVMAANFREFVE 423 (543)
Q Consensus 345 ~-~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 423 (543)
. ...... .+... ... ....+.|||+.+... +...+.++.|++++
T Consensus 192 ~~~~~~~~-~~~~~-~~~-~~~~~liNG~~~~~~--------------------------------~~~~l~v~~GervR 236 (336)
T 1oe1_A 192 TLAESYGD-TVQVM-RTL-TPSHIVFNGKVGALT--------------------------------GANALTAKVGETVL 236 (336)
T ss_dssp STGGGHHH-HHHHH-HTT-CCSEEEETTSTTTTS--------------------------------GGGCEEEETTCEEE
T ss_pred cccccccc-hhhHh-hcC-CCCEEEECCeeccCC--------------------------------CCcceEcCCCCEEE
Confidence 0 000000 00000 000 123578888754210 01236678899999
Q ss_pred EEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCC-CcceeEEeCCCCEEEEEEEecCcccceeeecchhhh
Q 009127 424 IVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDT-VARSTTQVYPRSWTAIYMALDNVGMWNIRSENWARQ 502 (543)
Q Consensus 424 ~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p-~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~He 502 (543)
|+..+.....+++++|||.|.|+. + |.+. ..+ .+.||+.|++|+.+.+.+.+++||.|+||||.+.|.
T Consensus 237 lin~~~~~~~~~~~i~gh~~~Vi~-D-G~~~---------~p~~~~~dtv~i~pGer~dvlv~~~~pG~y~~~~h~~~~~ 305 (336)
T 1oe1_A 237 LIHSQANRDTRPHLIGGHGDWVWE-T-GKFA---------NPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEA 305 (336)
T ss_dssp EEEEESSSCBCEEETTCCEEEEET-T-CCTT---------SCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSHHHH
T ss_pred EEecCCCCccceEEECCcCceEeC-C-CcCc---------CCccccceEEEECCCCcEEEEEEcCCCceEEEEechhhcc
Confidence 876666556677778999999996 3 3221 112 257999999999999999999999999999999986
Q ss_pred -hcccEEEEEEecCC
Q 009127 503 -YLGQQFYLRVYSPA 516 (543)
Q Consensus 503 -d~GMm~~~~V~~p~ 516 (543)
+.||++.|+|.+..
T Consensus 306 ~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 306 FELGAAGHIKVEGKW 320 (336)
T ss_dssp HTTSCEEEEEEESCC
T ss_pred ccCCCeEEEEECCCC
Confidence 99999999998644
No 53
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=99.72 E-value=3.6e-16 Score=164.95 Aligned_cols=234 Identities=14% Similarity=0.138 Sum_probs=153.6
Q ss_pred eEEEEEEEEEEEecCCC-----------eeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeec-CcccCCCCC
Q 009127 28 YRFFTWKITYGDIYPLG-----------VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISW-NGLQQRRNS 94 (543)
Q Consensus 28 ~~~~~l~~~~~~~~~~g-----------~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~-HG~~~~~~~ 94 (543)
.+++.|.++.-....+| .....+++||+. .|+|+|++| ++++|+.|... ....+|+ ||..+.. .
T Consensus 152 ~~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~d~~liNG~~-~p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~v-i 228 (451)
T 2uxt_A 152 VDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHV-I 228 (451)
T ss_dssp TTEEEEEEEEEEECTTSCEECCCCSSSCCCCSEEEETTEE-SCEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEE-E
T ss_pred CceEEEEEEeeecCCCCceecccccCCCCcCCEEEECCcc-cceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEE-E
Confidence 45777777765554433 335789999996 699999999 99999999976 4678999 8875542 4
Q ss_pred CCCCCC----C--CCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccce------------eEEEEecCCCCCCCCC
Q 009127 95 WQDGVY----G--TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAF------------GGIRIWSRPRIPVPFP 156 (543)
Q Consensus 95 ~~DG~p----~--tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~------------G~liV~~~~~~~~~~~ 156 (543)
..||.+ . .+..|.|||++++.+++. +.|+||++++........+. ..+-+........+
T Consensus 229 ~~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~-- 305 (451)
T 2uxt_A 229 SGDQGFLPAPVSVKQLSLAPGERREILVDMS-NGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLV-- 305 (451)
T ss_dssp ECSSSEEEEEEEESSEEECTTCEEEEEEECT-TCCCEEEEC----------------CCCCSCCEEEEEEECSCCC----
T ss_pred EeCCCccCCceEeceEEECceeEEEEEEEeC-CCCEEEEEecCccccccccccccccCCCCCCcceEEEEecCCCcCc--
Confidence 689964 2 457799999999999995 68999999986433221111 11112111100000
Q ss_pred CCCCceEEEeeeeeeccH-HHHHHHhccCCCCCCCCeEEEcCCCCC--cceEEEecCCEEEEEEEEcCCcceEEEEEeCC
Q 009127 157 PPAGDFTVLAGDWYRSNH-YVLRRLLDSGHNLPFPDGLLINGRGWN--GYTFTVEPGRTYRFRISNVGLTTSINFRIQGH 233 (543)
Q Consensus 157 ~~~~e~~l~~~d~~~~~~-~~~~~~~~~g~~~~~~~~~liNG~~~~--~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~ 233 (543)
..+++..|..+..-.. ......+... ..|+|||+.+. .+.+.++.|++++|+|+|. ..|+||||||
T Consensus 306 --~~~~p~~L~~~~~~~~~~~~~~~~~l~------~~~~iNg~~f~~~~~~~~~~~G~~~~~~l~N~---~~HP~HLHGh 374 (451)
T 2uxt_A 306 --TDSLPMRLLPTEIMAGSPIRSRDISLG------DDPGINGQLWDVNRIDVTAQQGTWERWTVRAD---EPQAFHIEGV 374 (451)
T ss_dssp ----CCCSCSSSSCCCCCCCSEEEEEEEC------SSSSBTTBCCCTTCCCEEEETTCEEEEEEEEE---EEEEEEETTC
T ss_pred --cccCccccCCCCCCCCCCcceEEEEEe------eEEEECCEeCCCCCCcEEcCCCCEEEEEEECC---CCcCeEECCc
Confidence 0000000000000000 0000000000 04789999862 4468999999999999998 4799999999
Q ss_pred eeEEEEEcCccc---cccccCeEEEcCCCeEEEEEEeCCCCcc----eEEEEeec
Q 009127 234 SMKLVEVEGSHT---LQNTYAALDIHLGQTYSVLVTMDQAPQD----YYIVVSSR 281 (543)
Q Consensus 234 ~~~via~DG~~~---~p~~~~~v~l~pgeR~dv~v~~~~~~g~----y~i~~~~~ 281 (543)
.|+|++.||.+. +|..+|++.+ |+++.|.|+++ .+|. |.++|+..
T Consensus 375 ~F~Vl~~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~d-npg~~~g~w~~HCHil 426 (451)
T 2uxt_A 375 MFQIRNVNGAMPFPEDRGWKDTVWV--DGQVELLVYFG-QPSWAHFPFYFNSQTL 426 (451)
T ss_dssp EEEEEEETTBCCCGGGSSCBSEEEE--EEEEEEEEECC-SCCBTTBCEEEEESSH
T ss_pred eEEEEeeCCcCCCcccCCCccEEEE--CCEEEEEEEeC-CCCCCCCceEEeCCch
Confidence 999999999875 4788999999 99999999998 4665 99999875
No 54
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=99.71 E-value=2.7e-16 Score=165.63 Aligned_cols=234 Identities=13% Similarity=0.173 Sum_probs=162.6
Q ss_pred eEEEEEEEEEEEecC------------CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCC
Q 009127 28 YRFFTWKITYGDIYP------------LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNS 94 (543)
Q Consensus 28 ~~~~~l~~~~~~~~~------------~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~ 94 (543)
.+++.|.++.-.... .|.....+++||+. .|.|+|++| ++++|+.|... ....+|++|..+.. .
T Consensus 146 ~~e~~l~l~D~~~~~~~~~~~~~~~~~~g~~~~~~~iNG~~-~p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~v-i 222 (439)
T 2xu9_A 146 AEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGAL-RPTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYL-I 222 (439)
T ss_dssp SEEEEEEEEEECEETTEECCCCHHHHHHCCCCSEEEETTEE-SCEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEE-E
T ss_pred CCcEEEEEEeeeeCCCCcCCCCccccccCCCCCEEEECCcc-CCcEEecCC-eEEEEEEecCCCceEEEEECCceEEE-E
Confidence 466777766533221 13345689999997 699999999 99999999975 46789999976543 4
Q ss_pred CCCCCCC------CCCcCCCCCeEEEEEEeCCCcccceecCCchhh--hh-ccc--------------eeE--EEEecCC
Q 009127 95 WQDGVYG------TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFH--KA-AGA--------------FGG--IRIWSRP 149 (543)
Q Consensus 95 ~~DG~p~------tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q--~~-~Gl--------------~G~--liV~~~~ 149 (543)
+.||.+. ....|.|||+++..+++. ++|.||++|+.... .. .|| ... |.+....
T Consensus 223 ~~DG~~~~~p~~~~~l~l~pgeR~dv~v~~~-~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 301 (439)
T 2xu9_A 223 AADGGFLEEPLEVSELLLAPGERAEVLVRLR-KEGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNP 301 (439)
T ss_dssp EETTEEEEEEEEESCEEECTTCEEEEEEECC-SSEEEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSC
T ss_pred ecCCCCCCCceEeceEEECCceeEEEEEEcC-CCceEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCCC
Confidence 6799752 345699999999999995 59999999973211 10 122 112 2232221
Q ss_pred CCCCCCCCC---CCceE--EEeeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCCC--cceEEEecCCEEEEEEEEcCC
Q 009127 150 RIPVPFPPP---AGDFT--VLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGWN--GYTFTVEPGRTYRFRISNVGL 222 (543)
Q Consensus 150 ~~~~~~~~~---~~e~~--l~~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~--~p~~~v~~G~~~rlRiiN~~~ 222 (543)
. +.+.+.. ..++. -.-..+... .+. .+..|+|||+.+. .+.+.++.|++++|+|.|.+.
T Consensus 302 ~-~~~~p~~l~~~~~l~~~~~~r~~~l~----------~~~---~g~~~~iNg~~~~~~~~~~~~~~g~~~~~~~~N~~~ 367 (439)
T 2xu9_A 302 K-PLPLPKALSPFPTLPAPVVTRRLVLT----------EDM---MAARFFINGQVFDHRRVDLKGQAQTVEVWEVENQGD 367 (439)
T ss_dssp C-CCCCCSCCCCCCCCCCCSEEEEEEEE----------EEG---GGTEEEETTBCCCTTCCCEEECTTCEEEEEEEECSS
T ss_pred c-cccCcccCCCcccCCCCCcceEEEEE----------eec---cCceEeECCEECCCCCCceecCCCCEEEEEEEcCCC
Confidence 1 1111100 00000 000000000 000 1137899999872 346899999999999999987
Q ss_pred cceEEEEEeCCeeEEEEEcCccc-cccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 223 TTSINFRIQGHSMKLVEVEGSHT-LQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 223 ~~~~~~~i~g~~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
. .|+||||||.|+|++.+|... +|...|++.+.||+++.+.++++ .||.|.++|+..
T Consensus 368 ~-~HP~HLHG~~F~Vl~~~g~~~~~p~~rDTv~v~p~~~v~i~f~ad-npG~w~~HCHil 425 (439)
T 2xu9_A 368 M-DHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLR-EKGRTVFHCHIV 425 (439)
T ss_dssp S-CEEEEESSCCBEEEEETTEECSSCCCBSEEEECTTCEEEEEEECC-SCEEEEEEESSH
T ss_pred C-CCCceeCCCcEEEEeeCCCCCCCCCCeEEEEeCCCCEEEEEEEcC-CCCCEEEECCcc
Confidence 5 799999999999999999875 58899999999999999999987 799999999865
No 55
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=99.65 E-value=5e-15 Score=159.03 Aligned_cols=228 Identities=16% Similarity=0.189 Sum_probs=152.9
Q ss_pred EEEEEECCcCC---------CceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCe
Q 009127 47 QQGILINGQFP---------GPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKN 111 (543)
Q Consensus 47 ~~~~~~Ng~~p---------gP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~ 111 (543)
...+++||+.. -|+|+|++|+++++|+.|... ....+|++|..+.. ...||.+. ....|.|||+
T Consensus 191 ~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~l~pgqR 269 (521)
T 1v10_A 191 PDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTV-IEVDGVSHQPLTVDSLTIFAGQR 269 (521)
T ss_dssp CSEEEETTBCCCSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESBEEECTTCE
T ss_pred CCEEEECCcccCCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEE-EecCCccccceeeeeEEEcccce
Confidence 36789999853 189999999999999999976 46789998876543 46899752 3466999999
Q ss_pred EEEEEEeCCCcccceecCCchh---hhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHH-----------HH
Q 009127 112 FTYVLQAKDQIGSYFYFPSFLF---HKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHY-----------VL 177 (543)
Q Consensus 112 ~~y~f~~~~~~Gt~wYH~H~~~---q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~-----------~~ 177 (543)
++..+++.+.+|.||.+++... ....|+..+++.........+..... +. ..+.+....... ..
T Consensus 270 ~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~-~~-~~~~~~~l~p~~~~~~p~~~~~~~~ 347 (521)
T 1v10_A 270 YSVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAEPTTSQN-SG-TALNEANLIPLINPGAPGNPVPGGA 347 (521)
T ss_dssp EEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTCCSCCCCCCCC-CS-CBCCGGGCCBSSCCCCSSCSSTTCS
T ss_pred EEEEEEcCCCCCceeeeeccccccccCCCCceeEEEEECCCCCCCCCCCCC-cc-cccchhhcccCCcccCCCcccCCcc
Confidence 9999999645799999998531 23334544555433221111110000 00 000000000000 00
Q ss_pred HHH--hccCCCCCCCCeEEEcCCCCC-----------------------cceEEEecCCEEEEEEEEcCCcceEEEEEeC
Q 009127 178 RRL--LDSGHNLPFPDGLLINGRGWN-----------------------GYTFTVEPGRTYRFRISNVGLTTSINFRIQG 232 (543)
Q Consensus 178 ~~~--~~~g~~~~~~~~~liNG~~~~-----------------------~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g 232 (543)
... +..+.. .....|+|||+.+. .+.++++.|++++++++| . ..|+|||||
T Consensus 348 ~~~~~l~~~~~-~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~N--~-~~HP~HLHG 423 (521)
T 1v10_A 348 DINLNLRIGRN-ATTADFTINGAPFIPPTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPG--G-GNHPFHLHG 423 (521)
T ss_dssp SEEEECCEECC-SSSSCCEESSCCCCCCSSCHHHHHHHTCCCGGGSSSTTTEEEECTTCEEEEEEEC--C-BSCEEEESS
T ss_pred eEEEEEEEecC-CceeEEEECCCcccCCCCchhhhhhcCCcccccCCCCceEEEecCCCEEEEEEcC--C-CCCCEEEcc
Confidence 000 000000 01126789999862 135789999999999999 3 479999999
Q ss_pred CeeEEEEEcCcc----ccccccCeEEE-cCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 233 HSMKLVEVEGSH----TLQNTYAALDI-HLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 233 ~~~~via~DG~~----~~p~~~~~v~l-~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
|.|+|++.+|.. .+|...|++.+ .||+++.+.|+++ .||.|.++|+...
T Consensus 424 h~F~Vl~~~~~~~~n~~~p~~rDTV~V~p~gg~v~Irf~aD-NPG~W~~HCHi~~ 477 (521)
T 1v10_A 424 HNFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTD-NPGPWFLHCHIDW 477 (521)
T ss_dssp CCEEEEECTTCSCCCCSSCCEESEEECCBSSCEEEEEEECC-SCEEEEEEESCHH
T ss_pred ceEEEEecCCCCccccCCCCeeeeEEeCCCCcEEEEEEEeC-CCeeEEEeeChHH
Confidence 999999999865 35888999999 7999999999998 7999999998753
No 56
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=99.65 E-value=8e-15 Score=156.82 Aligned_cols=249 Identities=14% Similarity=0.147 Sum_probs=161.4
Q ss_pred EEEEEEEEEEecCCCe-----eEEEEEECCcCC--------CceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCC
Q 009127 30 FFTWKITYGDIYPLGV-----KQQGILINGQFP--------GPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSW 95 (543)
Q Consensus 30 ~~~l~~~~~~~~~~g~-----~~~~~~~Ng~~p--------gP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~ 95 (543)
++.|.++.-....++. ....+++||+.. .|+|+|++|+++++|+.|... ....+|++|..+.. .+
T Consensus 143 e~~l~l~Dw~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~v-i~ 221 (503)
T 1hfu_A 143 NTIITLADWYHIPAPSIQGAAQPDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTI-IE 221 (503)
T ss_dssp TSEEEEEEECSSCGGGCC---CCSEEEETTBCCBTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EE
T ss_pred eEEEEEcccccCChHHhcCCCCCCEEEECcccccCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEE-Ee
Confidence 4556665543333332 246789999853 289999999999999999975 46789998876543 46
Q ss_pred CCCCCC-----CCCcCCCCCeEEEEEEeCCCcccceecCCch--hh-----hhccceeEEEEecCCCCCCCCCCCCCceE
Q 009127 96 QDGVYG-----TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL--FH-----KAAGAFGGIRIWSRPRIPVPFPPPAGDFT 163 (543)
Q Consensus 96 ~DG~p~-----tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~--~q-----~~~Gl~G~liV~~~~~~~~~~~~~~~e~~ 163 (543)
.||.+. ....|.|||+++..+++.+.+|.||.+++.. .+ ...|+..+++.........|......+.
T Consensus 222 ~DG~~~~p~~~~~l~l~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~~~~- 300 (503)
T 1hfu_A 222 VDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNP- 300 (503)
T ss_dssp ETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSCCCCCCCSSC-
T ss_pred ccCccccccccCeEEEcccceEEEEEEcCCCccceeeeeccccCCcccccccCCCceEEEEEECCCCCCCCCCCCCCcc-
Confidence 899752 3456899999999999964579999999843 11 2334434444433221111110000000
Q ss_pred EEeeeeeeccH--HHH---------HHHhccCCCCCCCCeEEEcCCCCC-----------------------cceEEEec
Q 009127 164 VLAGDWYRSNH--YVL---------RRLLDSGHNLPFPDGLLINGRGWN-----------------------GYTFTVEP 209 (543)
Q Consensus 164 l~~~d~~~~~~--~~~---------~~~~~~g~~~~~~~~~liNG~~~~-----------------------~p~~~v~~ 209 (543)
..+.+...... ... ...+..... .....|+|||+.+. .+.++++.
T Consensus 301 ~~l~~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~ 379 (503)
T 1hfu_A 301 AQLNEADLHALIDPAAPGIPTPGAADVNLRFQLG-FSGGRFTINGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELPR 379 (503)
T ss_dssp CBCCGGGCBBSSSCSCSSCSSTTCSSEEEECCEE-EETTEEEETTBCCCCCSSCHHHHHHTTCCSGGGSSSTTSEEEECS
T ss_pred CCCccccccccCccCCCCcccCCcceEEEEEEee-ccCceEEECCCccCCCCCcchhhhhcCCcccccCCCCceEEEccC
Confidence 00000000000 000 000000000 00126889999862 13578999
Q ss_pred CCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcc----ccccccCeEEE-cCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 210 GRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSH----TLQNTYAALDI-HLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 210 G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~----~~p~~~~~v~l-~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
|++++++++|......|+||||||.|+|++.+|.. .+|...|++.+ .||+++.+.|+++ .||.|.++|+...
T Consensus 380 g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~ad-nPG~W~~HCHil~ 456 (503)
T 1hfu_A 380 NQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTD-NPGPWFFHCHIEF 456 (503)
T ss_dssp SCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCCCCCCSSBCEESEEECCSTTCEEEEEEECC-SCEEEEEEESSHH
T ss_pred CCEEEEEEECCCCCCCCCEEEecceEEEEecCCCCccccCCCCeeeeEEecCCCceEEEEEEcC-CCeeeeEecCchh
Confidence 99999999964434589999999999999999875 25888999999 7999999999998 7999999998753
No 57
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.63 E-value=8.2e-17 Score=134.98 Aligned_cols=89 Identities=21% Similarity=0.325 Sum_probs=71.3
Q ss_pred cCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCC--CCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCch
Q 009127 55 QFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNS--WQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL 132 (543)
Q Consensus 55 ~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~--~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~ 132 (543)
+|++|+|++++||+|+ ++|..+..+++||||..++... .+||.+.+++.|.||++++|+|++++++|+||||||
T Consensus 15 ~f~p~~i~v~~Gd~V~--~~N~~~~~H~v~~~~~~~~~~~g~~~~~~~~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~-- 90 (105)
T 3cvb_A 15 QFEPANVTVHPGDTVK--WVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCA-- 90 (105)
T ss_dssp CEESSEEEECTTEEEE--EEECSSCCEEEEECTTSSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECT--
T ss_pred EEeCCEEEEcCCCEEE--EEECCCCCCeEEEeCCCCCcccccccccccccccccCCCCeEEEEEecCCCCeeEEEEeC--
Confidence 6788999999999975 5799889999999998654210 122222235789999999999998557999999999
Q ss_pred hhhhccceeEEEEec
Q 009127 133 FHKAAGAFGGIRIWS 147 (543)
Q Consensus 133 ~q~~~Gl~G~liV~~ 147 (543)
.|..+||.|.|+|++
T Consensus 91 ~H~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 91 PHRGAGMVGKITVEG 105 (105)
T ss_dssp TTGGGTCEEEEEECC
T ss_pred CchhcCCEEEEEEcC
Confidence 567889999999974
No 58
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=99.58 E-value=4.6e-14 Score=149.12 Aligned_cols=239 Identities=14% Similarity=0.171 Sum_probs=159.2
Q ss_pred EEEEEEEEEEEecCCCe-------------eEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCC
Q 009127 29 RFFTWKITYGDIYPLGV-------------KQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNS 94 (543)
Q Consensus 29 ~~~~l~~~~~~~~~~g~-------------~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~ 94 (543)
.+| |.++......+|. ....+++||+. .|+|.|++|+ |+|+.|... ....+|++|.... ..
T Consensus 181 ~~~-l~l~D~~~~~~g~~~~~~~~~~~~g~~gd~~lvNG~~-~p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~-vI 255 (481)
T 3zx1_A 181 EKD-LMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQF-KPKIKLATNE--RIRIYNATAARYLNLRIQGAKFI-LV 255 (481)
T ss_dssp EEE-EEEEEECCBTTSCCCCCCHHHHHHCCCCSEEEETTEE-SCEEEEETTE--EEEEEECCSSCCEEEEETTCEEE-EE
T ss_pred cee-EEEEEEeccCCCccccccchhhccCCcCCEEEECCcc-CceEEecCCC--EEEEEecCCCeEEEEEECCCceE-EE
Confidence 444 6666655444442 34679999996 6899999999 999999965 6678999998754 34
Q ss_pred CCCCCC----C--CCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccc----------eeEEEEecCC-CCCC---C
Q 009127 95 WQDGVY----G--TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGA----------FGGIRIWSRP-RIPV---P 154 (543)
Q Consensus 95 ~~DG~p----~--tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl----------~G~liV~~~~-~~~~---~ 154 (543)
+.||.+ . ....|.|||+++.-++++ +.|+|..-++.... .|+ ..-+-+...+ ..|. +
T Consensus 256 a~DGg~~~~P~~~~~l~l~pgeR~dvlv~~~-~~~~~~l~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~lP~~l~~ 332 (481)
T 3zx1_A 256 GTDGGLIEKTIYKEELFLSPASRVEVLIDAP-KDGNFKLESAYYDR--DKMMVKEEPNTLFLANINLKKENVELPKNLKI 332 (481)
T ss_dssp EETTEEEEEEEEESSEEECTTCEEEEEEECS-SCEEEEEEECCCCC--CCSSCCCCCCCEEEEEEEEECCCCCCCSCSCC
T ss_pred EcCCCccCCceEeCeEEECCccEEEEEEEcC-CCcEEEEEEecccc--cCccccCCCCceeEEEEecCCCCccCCccccC
Confidence 789732 2 446799999999999995 57887776653211 111 1112222211 1111 0
Q ss_pred ---CCCCCCceEEEeeeeeeccHHHHHHHhccCCCC---CCCCeEEEcCCCC--CcceEEEecCCEEEEEEEEcCCcceE
Q 009127 155 ---FPPPAGDFTVLAGDWYRSNHYVLRRLLDSGHNL---PFPDGLLINGRGW--NGYTFTVEPGRTYRFRISNVGLTTSI 226 (543)
Q Consensus 155 ---~~~~~~e~~l~~~d~~~~~~~~~~~~~~~g~~~---~~~~~~liNG~~~--~~p~~~v~~G~~~rlRiiN~~~~~~~ 226 (543)
.+..+.+..+.++....+ .......+... .....++|||+.+ +.+.++++.|++++|+|.|.+.. .|
T Consensus 333 ~~~~~~~~~~r~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~~~~~G~~v~w~l~N~~~~-~H 407 (481)
T 3zx1_A 333 FKPSEEPKEFKEIIMSEDHMQ----MHGMMGKSEGELKIALASMFLINRKSYDLKRIDLSSKLGVVEDWIVINKSHM-DH 407 (481)
T ss_dssp CCCCCCCCEEEEEEEEECCST----TTTGGGCCHHHHHHHHHTTEEETTBCCCTTCCCEEEETTCCEEEEEEECSSS-CE
T ss_pred CCCCCCCCcEEEEEEeccchh----cccccccccccccccccceeEECCEeCCCCCceEEeCCCCEEEEEEEcCCCC-ce
Confidence 111122233333221100 00000000000 0012599999987 34679999999999999997765 89
Q ss_pred EEEEeCCeeEEEEE--cCccc---cccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 227 NFRIQGHSMKLVEV--EGSHT---LQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 227 ~~~i~g~~~~via~--DG~~~---~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
+||||||+|+|++. +|... ++...|++.|.|||++.|.++++ .+|.|.++|+..
T Consensus 408 p~HlHG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d-~pG~w~~HCHil 466 (481)
T 3zx1_A 408 PFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQD-FKGLRMYHCHIL 466 (481)
T ss_dssp EEEETTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCC-SCEEEEEEESSH
T ss_pred eEEEeccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcC-CCeeEEEEcCCh
Confidence 99999999999999 99875 35678999999999999999997 799999999864
No 59
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=99.55 E-value=2.2e-13 Score=144.88 Aligned_cols=232 Identities=15% Similarity=0.141 Sum_probs=151.3
Q ss_pred eEEEEEECCcC---------CCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCC
Q 009127 46 KQQGILINGQF---------PGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGK 110 (543)
Q Consensus 46 ~~~~~~~Ng~~---------pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~ 110 (543)
....+++||+- +-|.|+|++|+++++|+.|... ....+|++|..+.. ...||.+. ....|.|||
T Consensus 167 ~~d~~liNG~g~~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~i~pGq 245 (495)
T 3t6v_A 167 TADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTI-IETDGVDSQELTVDEIQIFAAQ 245 (495)
T ss_dssp CCSEEEETTBCCBSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESBEEECTTC
T ss_pred CCcEEEECCcCcCCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEE-EEeCCcccCCEEeeeEEEcCce
Confidence 34789999963 3479999999999999999864 56788888876543 46899763 335699999
Q ss_pred eEEEEEEeCCCcccceecCCch---hhhhccceeEEEEecCCCCCCCCCCCCC-ceEEEeeeeeeccHH-----------
Q 009127 111 NFTYVLQAKDQIGSYFYFPSFL---FHKAAGAFGGIRIWSRPRIPVPFPPPAG-DFTVLAGDWYRSNHY----------- 175 (543)
Q Consensus 111 ~~~y~f~~~~~~Gt~wYH~H~~---~q~~~Gl~G~liV~~~~~~~~~~~~~~~-e~~l~~~d~~~~~~~----------- 175 (543)
+++..+++.+..|.||.++... .....|..-+++.........|...... ... .+.+.......
T Consensus 246 R~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~~-~~~~~~L~p~~~~~~p~~~~~~ 324 (495)
T 3t6v_A 246 RYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTK-CLIETDLHPLSRNGVPGNPHQG 324 (495)
T ss_dssp EEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCSSCSS-BCCGGGCCBSSCCCCSSCSSTT
T ss_pred EEEEEEECCCCCceEEEEEecccCccccCCCceEEEEEECCCCCCCCCCCCCCCCcc-ccccccccccccccCCCccCCC
Confidence 9999999964569999998632 1122334334554432211111100000 000 00000000000
Q ss_pred HHHHHhccCCCCCCCCeEEEcCCCCC-----------------------cceEEEecCCEEEEEEEEcCCcceEEEEEeC
Q 009127 176 VLRRLLDSGHNLPFPDGLLINGRGWN-----------------------GYTFTVEPGRTYRFRISNVGLTTSINFRIQG 232 (543)
Q Consensus 176 ~~~~~~~~g~~~~~~~~~liNG~~~~-----------------------~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g 232 (543)
.....+.... ...+..|+|||+.+. .+.+.++.|++++|.|.|......|+|||||
T Consensus 325 ~~d~~~~l~~-~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~n~~~~~HP~HLHG 403 (495)
T 3t6v_A 325 GADCNLNLSL-GFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHG 403 (495)
T ss_dssp CSSEEEECCE-EEETTEEEETTBCCCCCSSCHHHHHHTTCCSSTTSSSTTSEEEECTTCEEEEEEECCSSSCCCEEEETT
T ss_pred CCcEEEEEEE-EecCcEEEEcCEecCCCCCcchhhhhcCCcCcccccCCcceEEecCCCEEEEEEccCCCCCCcceeecC
Confidence 0000000000 001136889998751 1248999999999999843333589999999
Q ss_pred CeeEEEEEcCccc----cccccCeEEEcC-CCeEEEEEEeCCCCcceEEEEeec
Q 009127 233 HSMKLVEVEGSHT----LQNTYAALDIHL-GQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 233 ~~~~via~DG~~~----~p~~~~~v~l~p-geR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
|.|+|++.+|... .|...|++.+.+ |+.+.+.|+++ .||.|.++|+..
T Consensus 404 h~F~vl~~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf~ad-nPG~W~~HCHi~ 456 (495)
T 3t6v_A 404 HDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTD-NPGPWFLHCHID 456 (495)
T ss_dssp CCEEEEECTTCCCCCSSSCCEESEEECCSTTCEEEEEEECC-SCEEEEEEESCH
T ss_pred CcEEEEecCCCCCcccCCCCCccEEEcCCCCcEEEEEEEcC-CCeeEEEEecch
Confidence 9999999988653 588899999997 99999999999 799999999865
No 60
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.5e-13 Score=144.01 Aligned_cols=219 Identities=11% Similarity=0.151 Sum_probs=148.9
Q ss_pred EEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeEEEEEEeCC
Q 009127 47 QQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNFTYVLQAKD 120 (543)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~~y~f~~~~ 120 (543)
...+++||+. .|+|+|++|+++++|+.|... ....+|++|..+.. ...||.+. ....|.|||+++..+++.+
T Consensus 167 ~d~~liNG~~-~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~P~~~~~l~l~~gqR~dvlv~~~~ 244 (534)
T 1zpu_A 167 PQNLIVNNTM-NLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTV-VEIDGITTEKNVTDMLYITVAQRYTVLVHTKN 244 (534)
T ss_dssp CSEEEETTBS-SCEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESCEEECTTCEEEEEEECCS
T ss_pred CceEEECCCC-ceEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEE-EeccCcCccccEeceEEECccceEEEEEEcCC
Confidence 4678999996 699999999999999999965 46678888875543 46899763 3466999999999999953
Q ss_pred C-cccceecCCchhhhh------cccee-EEEEecCCC-CCCCC-----CC-C---------------CCceEEEeeeee
Q 009127 121 Q-IGSYFYFPSFLFHKA------AGAFG-GIRIWSRPR-IPVPF-----PP-P---------------AGDFTVLAGDWY 170 (543)
Q Consensus 121 ~-~Gt~wYH~H~~~q~~------~Gl~G-~liV~~~~~-~~~~~-----~~-~---------------~~e~~l~~~d~~ 170 (543)
+ .|.||.......... ....+ +++...... .+.+. .. . ..+..+.+.--
T Consensus 245 ~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~l~~~- 323 (534)
T 1zpu_A 245 DTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQPYEKEAIYGEPDHVITVDVV- 323 (534)
T ss_dssp CSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCBCCCCCCSCSSCSCCGGGCCBSSCCCCCCSCSEEEEEEEE-
T ss_pred CCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCCCCCCcccccccccccccceeCCCCCCCCCCCeEEEEEEE-
Confidence 3 578999876432210 01122 233222111 11110 00 0 00001111000
Q ss_pred eccHHHHHHHhccCCCCCCCCeEEEcCCCCC--------------------------cceEEEecCCEEEEEEEEcCCcc
Q 009127 171 RSNHYVLRRLLDSGHNLPFPDGLLINGRGWN--------------------------GYTFTVEPGRTYRFRISNVGLTT 224 (543)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~--------------------------~p~~~v~~G~~~rlRiiN~~~~~ 224 (543)
+... ......++|||+.+. ...+.++.|++++|.|.|.+..
T Consensus 324 ----------~~~~--~~~~~~~~iNg~s~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~- 390 (534)
T 1zpu_A 324 ----------MDNL--KNGVNYAFFNNITYTAPKVPTLMTVLSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQDTG- 390 (534)
T ss_dssp ----------EEEC--TTSCEEEEETTBCCCCCSSCHHHHHTTSGGGTTCGGGGCSSSCEEEECTTCEEEEEEEECSSS-
T ss_pred ----------eecc--CCceeEEEECCCcccCCCCCceeeecccCcccCCCcccCCCceEEEeCCCCEEEEEEeCCCCC-
Confidence 0000 001236789998651 2358899999999999999865
Q ss_pred eEEEEEeCCeeEEEEEcCc-----------c---------ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 225 SINFRIQGHSMKLVEVEGS-----------H---------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 225 ~~~~~i~g~~~~via~DG~-----------~---------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
.|+||||||.|+|++.++. + ..|...|++.+.||+.+.|.|+++ .||.|.+||+...
T Consensus 391 ~HP~HLHGh~F~Vl~~~~~~~~~~~G~p~~~~~~~~~~~~~~p~~RDTv~V~pgg~v~IrF~aD-NPG~W~~HCHi~~ 467 (534)
T 1zpu_A 391 THPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKAD-NPGVWFFHCHIEW 467 (534)
T ss_dssp CEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEEEEEECC-SCEEEEEEECCHH
T ss_pred CCCeEecCCceEEEeecCCccccccCcccccCccccccccCCCCeeeEEEeCCCCEEEEEEEeC-CCeeEEEEeCchh
Confidence 8999999999999999853 1 236678999999999999999998 7999999998753
No 61
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=99.51 E-value=4.5e-13 Score=144.93 Aligned_cols=204 Identities=11% Similarity=0.102 Sum_probs=137.3
Q ss_pred eEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeEEEEEEe-CCCcccceecCCch
Q 009127 60 QIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNFTYVLQA-KDQIGSYFYFPSFL 132 (543)
Q Consensus 60 ~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~~y~f~~-~~~~Gt~wYH~H~~ 132 (543)
+|+|++|+++++|+.|... ....+|++|..+.. .+.||.+. ....|.|||+++..+++ .+.+|.||-+++..
T Consensus 205 ~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~g~y~i~~~~~ 283 (552)
T 1aoz_A 205 IFHVSPKKTYRIRIASTTALAALNFAIGNHQLLV-VEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR 283 (552)
T ss_dssp CEEECTTCEEEEEEEECCSSCEEEEEETTCCEEE-EEETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEE
T ss_pred EEEEcCCCEEEEEEEcccccceEEEEEcCcEEEE-EEECCcccCceEEeEEEEcCCcEEEEEEEcCCCCCCCEEEEEEcc
Confidence 8999999999999999965 45678888876543 46899652 34679999999999999 33489999999854
Q ss_pred h---hhhccceeEEEEecCCC--CCC---C-CC--------------------------CCCCceEEEeeeeeeccHHHH
Q 009127 133 F---HKAAGAFGGIRIWSRPR--IPV---P-FP--------------------------PPAGDFTVLAGDWYRSNHYVL 177 (543)
Q Consensus 133 ~---q~~~Gl~G~liV~~~~~--~~~---~-~~--------------------------~~~~e~~l~~~d~~~~~~~~~ 177 (543)
. +.. ...+.|-+..... .+. + .+ ..++.+.+.+..-.
T Consensus 284 ~~~~~~~-~~~ail~y~~~~~~~~p~~~~p~~p~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~------- 355 (552)
T 1aoz_A 284 ARHPNTP-PGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNV------- 355 (552)
T ss_dssp SSCCCSC-CEEEEEEETTSCTTSCCSSCCCCCCCTTCHHHHHHHHTTCCBCTTCCCCCSSCSEEEEEEEEEEE-------
T ss_pred cCCCCCc-cEEEEEEECCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCCCCcEEEEEEEeecc-------
Confidence 2 111 1223333333221 000 0 00 00111111110000
Q ss_pred HHHhccCCCCCCCCeEEEcCCCCC---------------------------------------------cceEEEecCCE
Q 009127 178 RRLLDSGHNLPFPDGLLINGRGWN---------------------------------------------GYTFTVEPGRT 212 (543)
Q Consensus 178 ~~~~~~g~~~~~~~~~liNG~~~~---------------------------------------------~p~~~v~~G~~ 212 (543)
......|+|||+.+. ...+.++.|++
T Consensus 356 ---------~~~~~~w~iNg~s~~~p~~P~L~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~ 426 (552)
T 1aoz_A 356 ---------INGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEV 426 (552)
T ss_dssp ---------ETTEEEEEETTEEECCCSSCHHHHHHTTCTTSSCCSCCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCE
T ss_pred ---------CCCeEEEEECCCccCCCCCCHHHHHhhcCccccccCCCccccccccccccccccccccccceEEEecCCCE
Confidence 000113555655320 13478999999
Q ss_pred EEEEEEEcCC-----cceEEEEEeCCeeEEEEEc-Ccc----------ccccccCeEEEcCCCeEEEEEEeCCCCcceEE
Q 009127 213 YRFRISNVGL-----TTSINFRIQGHSMKLVEVE-GSH----------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYI 276 (543)
Q Consensus 213 ~rlRiiN~~~-----~~~~~~~i~g~~~~via~D-G~~----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i 276 (543)
++|.|.|.+. ...|+||||||.|+|++.. |.+ .+|...|++.+.||+.+.|.|+++ .||.|.+
T Consensus 427 v~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~aD-NPG~W~~ 505 (552)
T 1aoz_A 427 VDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVAD-NPGVWAF 505 (552)
T ss_dssp EEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGGGGGGSCCSSCCEESEEEECTTEEEEEEEECC-SCEEEEE
T ss_pred EEEEEeCCcccccccCCCCCEEEcCCceEEEecccCccCcccccccccCCCCccCeEEeCCCceEEEEEEcC-CCeEEEE
Confidence 9999999874 3469999999999999984 653 257789999999999999999998 7999999
Q ss_pred EEeecc
Q 009127 277 VVSSRF 282 (543)
Q Consensus 277 ~~~~~~ 282 (543)
+|+...
T Consensus 506 HCHi~~ 511 (552)
T 1aoz_A 506 HCHIEP 511 (552)
T ss_dssp EESSHH
T ss_pred Eeeehh
Confidence 998753
No 62
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=99.50 E-value=2.2e-13 Score=144.83 Aligned_cols=231 Identities=13% Similarity=0.148 Sum_probs=149.9
Q ss_pred eEEEEEECCcC--------CCceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCCcCCCCCe
Q 009127 46 KQQGILINGQF--------PGPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKN 111 (543)
Q Consensus 46 ~~~~~~~Ng~~--------pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~ 111 (543)
....+++||+- +-|.|+|++|+++++|+.|... ....+|++|..+.. .+.||.+. ....|.|||+
T Consensus 165 ~~d~~liNG~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~i~pGqR 243 (499)
T 3pxl_A 165 GADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTI-IEVDSVNSQPLEVDSIQIFAAQR 243 (499)
T ss_dssp SCSEEEETTBCCCTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESBEEECTTCE
T ss_pred CCcEEEECCCCcCCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEE-EEECCcccCceEeeeEEECCCcE
Confidence 34789999973 3479999999999999999865 56788999976543 46899763 3356999999
Q ss_pred EEEEEEeCCCcccceecCCch--h-hhhccceeEEEEecCCCCCCCCCCCCCceEEEeeeeeeccHH-----------HH
Q 009127 112 FTYVLQAKDQIGSYFYFPSFL--F-HKAAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWYRSNHY-----------VL 177 (543)
Q Consensus 112 ~~y~f~~~~~~Gt~wYH~H~~--~-q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~-----------~~ 177 (543)
++..+++.+..|.||..+... . ....|..-+++.........|........ ..+.+....... ..
T Consensus 244 ~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~-~~~~~~~L~p~~~~~~p~~~~~~~~ 322 (499)
T 3pxl_A 244 YSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQTTSV-KPLNEVDLHPLVSTPVPGAPSSGGV 322 (499)
T ss_dssp EEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCCCS-SBCCGGGCCBSSCCCCSSCSSTTCS
T ss_pred EEEEEECCCCCceEEEEEecccCccccCCCceEEEEEeCCCCCCCCCCCCCCCC-cccccccccccccccCCCcccCCCC
Confidence 999999965569999987632 1 11222322344333221111110000000 000010000000 00
Q ss_pred HHHhccCCCCCCCCeEEEcCCCCC-----------------------cceEEEecCCEEEEEEEE---cCCcceEEEEEe
Q 009127 178 RRLLDSGHNLPFPDGLLINGRGWN-----------------------GYTFTVEPGRTYRFRISN---VGLTTSINFRIQ 231 (543)
Q Consensus 178 ~~~~~~g~~~~~~~~~liNG~~~~-----------------------~p~~~v~~G~~~rlRiiN---~~~~~~~~~~i~ 231 (543)
...+.... ...+..|+|||+.+. .+.+.++.|++++|.|.| .+. ..|+||||
T Consensus 323 d~~~~l~~-~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~~~n~~~-~~HP~HLH 400 (499)
T 3pxl_A 323 DKAINMAF-NFNGSNFFINGASFVPPTVPVLLQILSGAQTAQDLLPSGSVYVLPSNASIEISFPATAAAPG-APHPFHLH 400 (499)
T ss_dssp SEEEECCE-EECSSCEEETTBCCCCCSSCHHHHHHTTCCSTTTSSSTTSEEEECTTCEEEEEEECCTTSCS-CSCEEEET
T ss_pred cEEEEEEE-EecCcEEEEcCEecCCCCCchhhhhhcCCccccccCCCceeEEecCCCEEEEEEecCcccCC-CCccceec
Confidence 00000000 001236889998751 235789999999999994 333 47999999
Q ss_pred CCeeEEEEEcCccc----cccccCeEEEcC---CCeEEEEEEeCCCCcceEEEEeec
Q 009127 232 GHSMKLVEVEGSHT----LQNTYAALDIHL---GQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 232 g~~~~via~DG~~~----~p~~~~~v~l~p---geR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
||.|+|++.+|... .|...|++.+.+ |+.+.+.|+++ .||.|.++|+..
T Consensus 401 Gh~F~Vl~~~g~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~ad-nPG~W~~HCHi~ 456 (499)
T 3pxl_A 401 GHTFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTN-NPGPWFLHCHID 456 (499)
T ss_dssp TCCEEEEECTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECC-SCEEEEEEESSH
T ss_pred CCcEEEEeccCCcccccCCCCccceEEcCCcCCCcEEEEEEEcC-CCceEEEEeCCh
Confidence 99999999887643 588899999986 99999999998 799999999864
No 63
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=99.50 E-value=6.3e-13 Score=140.44 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=156.3
Q ss_pred EEEEEEEEEEEecCCC--------------eeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeec-CcccCCC
Q 009127 29 RFFTWKITYGDIYPLG--------------VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISW-NGLQQRR 92 (543)
Q Consensus 29 ~~~~l~~~~~~~~~~g--------------~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~-HG~~~~~ 92 (543)
.++.|.++.-....+| .....+++||+. .|.+.+ +|+++|+|+.|... ....+++ +|..+.
T Consensus 151 ~d~~lvl~D~~~~~~g~~~~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v-~g~~~RlRliNas~~~~~~l~i~dg~~~~- 227 (488)
T 3od3_A 151 DDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLY- 227 (488)
T ss_dssp TEEEEEEEEECBCTTSSBCCCCSHHHHHHCCCCSEEEETTBS-SCEEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEE-
T ss_pred cceeEEEEEeeecCCCceeccccccccccCCCCCEEEEcCCc-CccEec-CCCEEEEEEEccCCCceeeeeecCCCeEE-
Confidence 3667777765544333 234679999996 588876 67899999999965 4567877 575433
Q ss_pred CCCCCCCC----C--CCCcCCCCCeEEEEEEeCCCcccceecCCchhhh----h--ccceeEEEEec-----CCCCCCCC
Q 009127 93 NSWQDGVY----G--TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHK----A--AGAFGGIRIWS-----RPRIPVPF 155 (543)
Q Consensus 93 ~~~~DG~p----~--tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~----~--~Gl~G~liV~~-----~~~~~~~~ 155 (543)
....||.+ . ....|.|||+++.-+++. +.++|+.-+...... . +.-.-.+-|.+ ....|...
T Consensus 228 vIa~DG~~l~~P~~~~~l~l~pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~L 306 (488)
T 3od3_A 228 VIASDGGLLPEPVKVSELPVLMGERFEVLVEVN-DNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL 306 (488)
T ss_dssp EEEETTEEEEEEEEESCEEECTTCEEEEEEEEC-TTCCEEEEECCCSSTTTTSTTTTSCEEEEEEEEEEEECCCCCCSCC
T ss_pred EEEeCCCcccCccEeceEEECCCCEEEEEEEeC-CCceEEEEEeccCCCCcccccccCccceeEecccccCCCCCCCccc
Confidence 24689953 2 446799999999999996 577887765421110 0 00011222222 11111111
Q ss_pred ---C---C----CCCceEEEeeeee-eccHHHHHH-H----hc------------cCCCC--------CCCCeEEEcCCC
Q 009127 156 ---P---P----PAGDFTVLAGDWY-RSNHYVLRR-L----LD------------SGHNL--------PFPDGLLINGRG 199 (543)
Q Consensus 156 ---~---~----~~~e~~l~~~d~~-~~~~~~~~~-~----~~------------~g~~~--------~~~~~~liNG~~ 199 (543)
+ . ..+++.+.+.... ......+.+ + +. .|... .....|+|||+.
T Consensus 307 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ING~~ 386 (488)
T 3od3_A 307 SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQA 386 (488)
T ss_dssp CCCCCCCCCTTCCEEEEEEEECHHHHHHHHHHHHHHHGGGGGTTSCHHHHCCCSCCCCCCCSCCCGGGCGGGCEEETTBC
T ss_pred ccCCCCcccccccceEEEEEecccccccccccccccccccccccccccccccccccCccccccccccccccceeeECCee
Confidence 0 0 0122233321100 000000000 0 00 01000 001247999998
Q ss_pred C--CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCcccc---ccccCeEEEcCCCeEEEEEEeCC---CC
Q 009127 200 W--NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTL---QNTYAALDIHLGQTYSVLVTMDQ---AP 271 (543)
Q Consensus 200 ~--~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~---p~~~~~v~l~pgeR~dv~v~~~~---~~ 271 (543)
+ ..+.++++.|+++||+|+|.+....|+|||||++|+|++.||.... +...|++.|. |+++.|+|++++ .+
T Consensus 387 ~~~~~~~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~~kDTV~v~-g~~~~i~~~f~~~~~~~ 465 (488)
T 3od3_A 387 FDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVE-GNVSEVLVKFNHDAPKE 465 (488)
T ss_dssp CCTTCCSEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEEBTTBCCCGGGSSSBSEEEES-SSEEEEEECBCSCCCGG
T ss_pred CCCCCCceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEeccCCCccccccCCceeEEEeC-CCEEEEEEEeccCCCCC
Confidence 6 3567999999999999999996558999999999999999998764 3578999999 999999999974 35
Q ss_pred cceEEEEeec
Q 009127 272 QDYYIVVSSR 281 (543)
Q Consensus 272 g~y~i~~~~~ 281 (543)
|.|.++|+..
T Consensus 466 G~~m~HCH~l 475 (488)
T 3od3_A 466 HAYMAHCHLL 475 (488)
T ss_dssp GCEEEEESSH
T ss_pred CCEEEeCCch
Confidence 7999999864
No 64
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=99.47 E-value=3.8e-12 Score=137.66 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=147.3
Q ss_pred EEEEEECCcCC--------CceEEEecCCEEEEEEEECCCC-CceeecCcccCCCCCCCCCCCC-----CCCcCCCCCeE
Q 009127 47 QQGILINGQFP--------GPQIDAVTNDNLIISVYNYLRE-PFLISWNGLQQRRNSWQDGVYG-----TTCPIPPGKNF 112 (543)
Q Consensus 47 ~~~~~~Ng~~p--------gP~i~v~~Gd~v~i~~~N~l~~-~~~iH~HG~~~~~~~~~DG~p~-----tq~~i~PG~~~ 112 (543)
...+++||+.. -|+|+|++|+++++||.|.... ...+|++|..+.. ...||.+. ....|.|||++
T Consensus 195 ~d~~liNG~~~~~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~l~pgeR~ 273 (559)
T 2q9o_A 195 SDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTV-IAADMVPVNAMTVDSLFLAVGQRY 273 (559)
T ss_dssp BSEEEETTBCBCTTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESCEEECTTCEE
T ss_pred cceeEECCccccCcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEE-EecCCcccCceEeCeEEEccEEEE
Confidence 46789999873 3799999999999999999754 5689999876543 46799762 34669999999
Q ss_pred EEEEEeCCCcccceecCCc--hhh---hhcc-ceeEEEEecCCCC-CCC--CCCCC----CceEE-EeeeeeeccH---H
Q 009127 113 TYVLQAKDQIGSYFYFPSF--LFH---KAAG-AFGGIRIWSRPRI-PVP--FPPPA----GDFTV-LAGDWYRSNH---Y 175 (543)
Q Consensus 113 ~y~f~~~~~~Gt~wYH~H~--~~q---~~~G-l~G~liV~~~~~~-~~~--~~~~~----~e~~l-~~~d~~~~~~---~ 175 (543)
+..+++.+.+|.||..... ... .... ..+.|-+...... |.. ....+ .+..+ .+........ .
T Consensus 274 dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~ail~y~~~~~~~P~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 353 (559)
T 2q9o_A 274 DVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVK 353 (559)
T ss_dssp EEEEECCSCSSEEEEEEECCGGGTTCCBSSSCCEEEEEETTSCCSCCCCCCCCCCCCTTCCCSCCCBSSCCBCCCTTCCC
T ss_pred EEEEECCCCCCcEEEEEEeccccccCCCCCCceeEEEEECCCCCCCCCCCCCcCCCcccccccccccCCCCCCCCccccc
Confidence 9999996557999988764 211 0111 1233333332210 100 00000 00000 0000000000 0
Q ss_pred HHHHHh--ccCCCCCCCCeEEEcCCCCC----cc-----------------eEEEecCCEEEEEEEEcCC----cceEEE
Q 009127 176 VLRRLL--DSGHNLPFPDGLLINGRGWN----GY-----------------TFTVEPGRTYRFRISNVGL----TTSINF 228 (543)
Q Consensus 176 ~~~~~~--~~g~~~~~~~~~liNG~~~~----~p-----------------~~~v~~G~~~rlRiiN~~~----~~~~~~ 228 (543)
.....+ ...........++|||+.+. .| .+.+..++.+++.++|... ...|+|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~ 433 (559)
T 2q9o_A 354 RPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPM 433 (559)
T ss_dssp CGGGEEEEEEECSSSSSCEEEETTBCCCCCTTSCHHHHHHHTCCCCCGGGCEEEECCSSCEEEEEEEECTTSSCCCCEEE
T ss_pred ceeEEEEEEeecCCCceEEEEECCEecccCCCCCcHhHhhcCCccCCCCceEEEcCCCCEEEEEEEeCCCccccCCCCcE
Confidence 000000 00000112246899999751 12 3677777777776666643 458999
Q ss_pred EEeCCeeEEEEEcC---------cc------------ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 229 RIQGHSMKLVEVEG---------SH------------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 229 ~i~g~~~~via~DG---------~~------------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
|||||.|+|++.++ .. ..|...|++.+.+|+++.+.|+++ .||.|.++|+...
T Consensus 434 HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~IrF~ad-NPG~W~~HCHil~ 507 (559)
T 2q9o_A 434 HLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTD-NPGAWLFHCHIAW 507 (559)
T ss_dssp EESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEEEEECC-SCEEEEEEECCHH
T ss_pred EECCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCCccEEEEEEcC-CCeeEEEEecchh
Confidence 99999999999986 22 146788999999999999999988 7999999998754
No 65
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.47 E-value=1.9e-13 Score=122.17 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCC------CCCC--CCcCCCCC--eE
Q 009127 43 LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDG------VYGT--TCPIPPGK--NF 112 (543)
Q Consensus 43 ~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG------~p~t--q~~i~PG~--~~ 112 (543)
.|+...-+.++|. ++|+|+|++||+|+|+++|... ...|.+.+...+....+. ...+ ...|.||+ +.
T Consensus 46 ~~~~~~~~~~~g~-~~p~i~V~~GD~V~~~~tN~~~--~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~ 122 (154)
T 2cal_A 46 PGFPFPSFEVHDK-KNPTLEIPAGATVDVTFINTNK--GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYT 122 (154)
T ss_dssp TTSCSSCEEETTE-ESCEEEECTTCEEEEEEEECCT--TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEE
T ss_pred cCCccccccccCC-CCCEEEEeCCCEEEEEEEcCCC--CeeeEEEEeecCcchhccccccccccccccccccCCCCceEE
Confidence 3444444555666 5799999999999999999733 446777665444333221 0100 12789999 99
Q ss_pred EEEEEeCCCcccceecCCchhhhhccceeEEEEe
Q 009127 113 TYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 113 ~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (543)
+|.|++ ++|+||||||...|..+||.|.|+|+
T Consensus 123 t~tft~--~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 123 DFTWHP--TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp EEEECC--CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred EEEEEE--CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 999997 69999999999899999999999985
No 66
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=99.47 E-value=1e-12 Score=138.22 Aligned_cols=226 Identities=15% Similarity=0.138 Sum_probs=151.4
Q ss_pred EEEEEEEEEEEecC-------------CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeec--Cc---cc
Q 009127 29 RFFTWKITYGDIYP-------------LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISW--NG---LQ 89 (543)
Q Consensus 29 ~~~~l~~~~~~~~~-------------~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~--HG---~~ 89 (543)
+++.|.++.-.... .|.....+++||+. .|+|+|++| ++++|+.|... ....+|+ +| ..
T Consensus 138 ~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~-~p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~ 215 (448)
T 3aw5_A 138 NDLPLVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVK-DAVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVP 215 (448)
T ss_dssp TEEEEEEEEEEEETTEEECCCCHHHHHHCCCCSEEEETTEE-TCEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEEC
T ss_pred ceEEEEEEeeccCCCcccccccccccccCccccEEEECCcc-cceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCcc
Confidence 56667776654332 12234678999996 699999999 99999999975 5678999 77 44
Q ss_pred CCCCCCCCCCCC------CCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc------------c-ceeE--EEEecC
Q 009127 90 QRRNSWQDGVYG------TTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA------------G-AFGG--IRIWSR 148 (543)
Q Consensus 90 ~~~~~~~DG~p~------tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~------------G-l~G~--liV~~~ 148 (543)
+. ..+.||.+. ....|.|||+++..++++ .+.||..++....... + -... |.+...
T Consensus 216 ~~-via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~--~~~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (448)
T 3aw5_A 216 MR-LIAVDQGFLARPIEVRALFLAPAERAEVVVELG--EGVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGK 292 (448)
T ss_dssp EE-EEEETTEEEEEEEEESCEEECTTCEEEEEEEEC--SEEEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEE
T ss_pred EE-EEEeCCCccCCceEeceEEECCcceEEEEEECC--CCceEEEccccccccCccccccccccCCCCCceEEEEEEcCC
Confidence 33 246899652 335699999999999995 4788988763211000 0 1112 222221
Q ss_pred CCC--CCCCC-------CCCCceEEEeeeeeeccHHHHHHHhccCCCCCCCCeEEEcCCCC--CcceEE-EecCCEEEEE
Q 009127 149 PRI--PVPFP-------PPAGDFTVLAGDWYRSNHYVLRRLLDSGHNLPFPDGLLINGRGW--NGYTFT-VEPGRTYRFR 216 (543)
Q Consensus 149 ~~~--~~~~~-------~~~~e~~l~~~d~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~--~~p~~~-v~~G~~~rlR 216 (543)
... +..+. ....+..+.+.. + ...|+|||+.+ ..+.++ ++.|++++|+
T Consensus 293 ~~~~~p~~L~~lp~~~~~~~~~~~~~l~~---------------~-----~~~~~iNg~~~~~~~p~~~~~~~g~~v~~~ 352 (448)
T 3aw5_A 293 GEAVPVEALSDPPPEPPKPTRTRRFALSL---------------S-----GMQWTINGMFWNASNPLFEHVSVEGVELWE 352 (448)
T ss_dssp CCCCCCCCCSCCCCCCCCCSEEEEEEEEE---------------E-----TTEEEETTBCCCTTCTTCCCEEECEEEEEE
T ss_pred CCCCCccccCCCCCCCCCCCceEEEEEeC---------------C-----CceeeECCCcCCCCCCceeccCCCCeEEEE
Confidence 111 00000 000111111110 0 12589999986 245567 9999999999
Q ss_pred EEEcCCcceEEEEEeCCeeEEEEEcCccc------------cc---cccCeEEEcCCCeEEEEEEeC---C-CCcceEEE
Q 009127 217 ISNVGLTTSINFRIQGHSMKLVEVEGSHT------------LQ---NTYAALDIHLGQTYSVLVTMD---Q-APQDYYIV 277 (543)
Q Consensus 217 iiN~~~~~~~~~~i~g~~~~via~DG~~~------------~p---~~~~~v~l~pgeR~dv~v~~~---~-~~g~y~i~ 277 (543)
|.|.+....|+||||||.|+|++.+|... .| ...|++.+.||+++.+++++. . .| |.++
T Consensus 353 i~N~~~~~~HP~HLHG~~F~Vl~~~G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~adnp--w~~H 430 (448)
T 3aw5_A 353 IVNDKASMPHPMHLHGFPMWIIERKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQL--FPFH 430 (448)
T ss_dssp EEECSSSCCEEEEESSSCBEEEEEESCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTTCE--EEEE
T ss_pred EEcCCCCCCcCEEECCceEEEEEecCCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCCCc--EEEE
Confidence 99998334899999999999999999764 23 578999999999999996664 2 45 8999
Q ss_pred Eeec
Q 009127 278 VSSR 281 (543)
Q Consensus 278 ~~~~ 281 (543)
|+..
T Consensus 431 CHil 434 (448)
T 3aw5_A 431 CHNL 434 (448)
T ss_dssp ESSH
T ss_pred cCCh
Confidence 9864
No 67
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=99.45 E-value=4.4e-12 Score=137.43 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=147.3
Q ss_pred EEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCcc-------cCCCCCCCCCCC----C--C------CCcC
Q 009127 47 QQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNGL-------QQRRNSWQDGVY----G--T------TCPI 106 (543)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~-------~~~~~~~~DG~p----~--t------q~~i 106 (543)
...+++||+. .|.+.|++| ++|+||.|... ....+++.|. .+. ....||.+ . . ...|
T Consensus 254 gd~~lVNG~~-~p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~-vIa~DG~~l~~P~~~~~~~~~~~l~l 330 (612)
T 2g23_A 254 GPYTTVNGRI-WPYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVH-QIGSDGGLLPRPVPVDFDDTLPVLSA 330 (612)
T ss_dssp CSEEEETTEE-SCEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEE-EEEETTEEEEEEEEECSSSSSSSEEE
T ss_pred CCEEEECCcc-CCeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEE-EEEeCCeEccCCEEecccCcccEEEE
Confidence 4678999996 699999999 99999999965 5667888664 111 23689964 2 2 4568
Q ss_pred CCCCeEEEEEEeCCCccc-ceecCCchhhh------hc----cceeEEEEecCC-CCC--CC--C----CCCCCc-----
Q 009127 107 PPGKNFTYVLQAKDQIGS-YFYFPSFLFHK------AA----GAFGGIRIWSRP-RIP--VP--F----PPPAGD----- 161 (543)
Q Consensus 107 ~PG~~~~y~f~~~~~~Gt-~wYH~H~~~q~------~~----Gl~G~liV~~~~-~~~--~~--~----~~~~~e----- 161 (543)
.|||+++.-+++.+.+|+ ++...-..... .+ +..--|.|.... ... .| + .....+
T Consensus 331 ~pgeR~dvlVd~~~~~g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~~~~~~~~~~P~~L~~~~~~l~~~~~~~~ 410 (612)
T 2g23_A 331 APAERFDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGH 410 (612)
T ss_dssp CTTCEEEEEEECTTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCEE
T ss_pred CCcCeEEEEEECCCCCCCEEEEEeCCccCCCCccccccCccccceEEEEEccCCCCCCCCCChhhccccccCCcccccce
Confidence 999999999999644664 66665421111 01 111224454432 111 11 1 000001
Q ss_pred eEEEee------------eeeeccHHHHHH-Hhc-cC-----CCCCCCCeEEEcCCCC-CcceEEEecCCEEEEEEEEcC
Q 009127 162 FTVLAG------------DWYRSNHYVLRR-LLD-SG-----HNLPFPDGLLINGRGW-NGYTFTVEPGRTYRFRISNVG 221 (543)
Q Consensus 162 ~~l~~~------------d~~~~~~~~~~~-~~~-~g-----~~~~~~~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~ 221 (543)
..+.+. -|.......-.. .+. .+ ........++|||+.+ +.+.++++.|++++|+|+|.+
T Consensus 411 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNG~~~~~~~~~~v~~G~~v~w~l~N~~ 490 (612)
T 2g23_A 411 RLIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTAATFNDGLGFTIGEGTHEQWTFLNLS 490 (612)
T ss_dssp EEEEECCTTCTTSTTCCCEEEEEEEC-----CCSCTTEEEEECTTSCEEEEEEEECSTTSCCCEEEETTCEEEEEEEECS
T ss_pred eEEeeccccccccccccceeeccccccccccccccccceeeeccCCceeEEEECCccCCCCCceEecCCCEEEEEEEeCC
Confidence 112221 011110000000 000 00 0001123588999976 467899999999999999998
Q ss_pred CcceEEEEEeCCeeEEEEEcCc------------------------cc---cccccCeEEEcCCCeEEEEEEeCCCCcce
Q 009127 222 LTTSINFRIQGHSMKLVEVEGS------------------------HT---LQNTYAALDIHLGQTYSVLVTMDQAPQDY 274 (543)
Q Consensus 222 ~~~~~~~~i~g~~~~via~DG~------------------------~~---~p~~~~~v~l~pgeR~dv~v~~~~~~g~y 274 (543)
.. .|+||||||.|+|++.+|. .. ++...|++.+.||+++.|.++++..+|.|
T Consensus 491 ~~-~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~e~~~kDTv~v~Pg~~~~i~~~~~~~pG~w 569 (612)
T 2g23_A 491 PI-LHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYGRF 569 (612)
T ss_dssp SS-CEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTSSSCBSEEEECSSEEEEEEEECCSCCEEE
T ss_pred CC-CCCeEEcCceEEEecccCcccccccccccCcccccccccccccCCCcccccccCeEEECCCcEEEEEEEeCCCCccE
Confidence 65 8999999999999987532 11 23478999999999999999999679999
Q ss_pred EEEEeecc
Q 009127 275 YIVVSSRF 282 (543)
Q Consensus 275 ~i~~~~~~ 282 (543)
.++|+...
T Consensus 570 ~~HCHil~ 577 (612)
T 2g23_A 570 MYHCHLLE 577 (612)
T ss_dssp EEEESSHH
T ss_pred EEEeCchh
Confidence 99998753
No 68
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=99.44 E-value=4e-13 Score=113.75 Aligned_cols=105 Identities=18% Similarity=0.110 Sum_probs=79.0
Q ss_pred EEEEEEEEEEEe-----cCCCeeEEE-EEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCC
Q 009127 29 RFFTWKITYGDI-----YPLGVKQQG-ILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGT 102 (543)
Q Consensus 29 ~~~~l~~~~~~~-----~~~g~~~~~-~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~t 102 (543)
++|.+.+.+... ..+|..... ..||+++++|.|++++||+|+++++|.... +||+.... .|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~p~~i~v~~G~~V~~~~~n~d~~-----~H~~~i~~----~~~--- 69 (112)
T 1iby_A 2 HNFNVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPI-----SEGFSIDA----FGV--- 69 (112)
T ss_dssp CCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESCEEEEETTCEEEEEEEECSSS-----CEEEEEGG----GTE---
T ss_pred CceeEEEEeccCccccEEeccEEEEEEEEEeeEEcCCEEEEeCCCEEEEEEEECCCC-----eEEEEEcC----CCc---
Confidence 346666665443 345666555 589999999999999999999999999765 55554321 122
Q ss_pred CCcCCCCCeEEEEEEeCCCcccceecCCchhhhhccceeEEEEec
Q 009127 103 TCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWS 147 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 147 (543)
+..+.||++++|.|++ +++|+||||||...... +|.|.|+|.+
T Consensus 70 ~~~i~pG~~~~~~f~~-~~~G~y~~~C~~~~~~~-~M~g~i~V~~ 112 (112)
T 1iby_A 70 QEVIKAGETKTISFTA-DKAGAFTIWCQLHPKNI-HLPGTLNVVE 112 (112)
T ss_dssp EEEECTTCEEEEEEEC-CSCEEEEEBCSSSCTTT-BCCEEEEEEC
T ss_pred eeEeCCCCEEEEEEEC-CCCEEEEEECCCCCchH-HCEEEEEEeC
Confidence 3678999999999998 58999999998765433 3999999974
No 69
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=99.39 E-value=9.9e-13 Score=133.50 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=83.3
Q ss_pred EEECCcC--CCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC-------C--CCCcCCCCCeEEEEEEe
Q 009127 50 ILINGQF--PGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY-------G--TTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 50 ~~~Ng~~--pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p-------~--tq~~i~PG~~~~y~f~~ 118 (543)
|+|||+. ..|.|++++||+|+|++.|.....+.+|+||...... .+|.. . ....|.||++++|.|++
T Consensus 198 ~~iNG~~~~~~~~l~v~~Ge~vri~l~N~g~~~HpfHlHGh~f~v~--~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~ 275 (343)
T 3cg8_A 198 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIA 275 (343)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEET
T ss_pred ceecccCCCCCccEEeCCCCEEEEEEEcCCccccccEecCcEEEEe--ccCcccCCCCcccceeeEEeCCCCEEEEEEEE
Confidence 6899986 4789999999999999999998999999999864432 23421 1 23569999999999996
Q ss_pred --CCCcccceecCCchhhhhccceeEEEEecCCCC
Q 009127 119 --KDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPRI 151 (543)
Q Consensus 119 --~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~ 151 (543)
.+.+|+|+||||...+...||.|.|+|.+++..
T Consensus 276 ~~~~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 276 GEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp TTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCCCCeeEEEeCCCHHHHhccCcEEEEEecCCCC
Confidence 257999999999999999999999999987653
No 70
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=99.39 E-value=5.4e-12 Score=135.24 Aligned_cols=217 Identities=14% Similarity=0.108 Sum_probs=141.4
Q ss_pred EEEEEECCcCCCceEEEecCCEEEEEEEECCCC-CceeecCcc-cCCCCCCCCCCC----C--CCCcCCCCCeEEEEEEe
Q 009127 47 QQGILINGQFPGPQIDAVTNDNLIISVYNYLRE-PFLISWNGL-QQRRNSWQDGVY----G--TTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~-~~~iH~HG~-~~~~~~~~DG~p----~--tq~~i~PG~~~~y~f~~ 118 (543)
...+++||+. .|.|.|+.| ++++|+.|.... ...+|+.|. .+. ..+.||.+ . ....|.|||+++..+++
T Consensus 230 ~d~~liNG~~-~p~~~v~~~-~~RlRliNa~~~~~~~~~i~~~~~~~-via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~ 306 (513)
T 2wsd_A 230 GETILVNGKV-WPYLEVEPR-KYRFRVINASNTRTYNLSLDNGGDFI-QIGSDGGLLPRSVKLNSFSLAPAERYDIIIDF 306 (513)
T ss_dssp CSEEEETTEE-SCEEECCSS-EEEEEEEECCSSCCEEEEETTCCCEE-EEEETTEEEEEEEEESEEEECTTCEEEEEEEC
T ss_pred cceEEECCcc-cceEEecCC-EEEEEEEccCCcceEEEEECCCCeEE-EEccCCCcccCceEeCeEEECCeeeEEEEEEC
Confidence 4678999996 699999885 999999999764 568898876 332 24689943 2 34669999999999999
Q ss_pred CCCccccee-cCCc--hhhhhccc-eeEEEEecCC--CCC----CC--CCCC--------CCceEEEeeeeeeccHHHHH
Q 009127 119 KDQIGSYFY-FPSF--LFHKAAGA-FGGIRIWSRP--RIP----VP--FPPP--------AGDFTVLAGDWYRSNHYVLR 178 (543)
Q Consensus 119 ~~~~Gt~wY-H~H~--~~q~~~Gl-~G~liV~~~~--~~~----~~--~~~~--------~~e~~l~~~d~~~~~~~~~~ 178 (543)
.+.+|.++. .+-. +.....+. ...+-+.... ..+ .| +... +.+..+.+...
T Consensus 307 ~~~~g~~~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~l~~~--------- 377 (513)
T 2wsd_A 307 TAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGT--------- 377 (513)
T ss_dssp GGGTTCEEEEEECCCSSSSCCTTTTTEEEEEECCSCCSSCCCCCCCSBCSCCGGGCCCCEEEEEEEEEEEE---------
T ss_pred CCCCCcEEEEEecccccccCCCCCCcceEEEEeccCcccCccCCCCccccCCCCcccCCCcceEEEEEEee---------
Confidence 644676332 1111 00000011 1222232211 000 11 0000 00011111110
Q ss_pred HHhccCCCCCCCCeEEEcCCCCC-cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCc--------------
Q 009127 179 RLLDSGHNLPFPDGLLINGRGWN-GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGS-------------- 243 (543)
Q Consensus 179 ~~~~~g~~~~~~~~~liNG~~~~-~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~-------------- 243 (543)
+.. .....++|||+.+. ...+.++.|++++|.|.|.+.. .|+||||||.|+|++.+|.
T Consensus 378 --~~~----~g~~~~~iNg~~~~~~~~~~~~~g~~~~w~l~N~~~~-~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~ 450 (513)
T 2wsd_A 378 --QDE----YGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRG-THPIHLHLVSFRVLDRRPFDIARYQESGELSYT 450 (513)
T ss_dssp --ECT----TSCEEEEETTBCTTSCCCBCCBTTCEEEEEEEECSSS-CEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBS
T ss_pred --cCC----CCCceEeECCccCCCcccEecCCCCEEEEEEEcCCCC-CcCEeEeCceEEEEEecCccccccccccccccc
Confidence 000 01125789999862 3456899999999999999875 8999999999999998752
Q ss_pred -c------ccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 244 -H------TLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 244 -~------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
. -++..+|++.|.||+++.|++++++.+|.|.++|+...
T Consensus 451 ~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnpG~w~~HCHil~ 496 (513)
T 2wsd_A 451 GPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHALE 496 (513)
T ss_dssp SCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCCEEEEEEESCHH
T ss_pred CCCCCCCccccCcccEEEeCCCCEEEEEEEecCCCCCEEEEcCChh
Confidence 1 12357899999999999999999657999999998753
No 71
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=99.38 E-value=5e-12 Score=135.73 Aligned_cols=241 Identities=14% Similarity=0.042 Sum_probs=146.3
Q ss_pred EEEEEECCcCCCceEEEecCCEEEEEEEECCC-CCceeecCc-------ccCCCCCCCCCCC----C--CCCcCCCCCeE
Q 009127 47 QQGILINGQFPGPQIDAVTNDNLIISVYNYLR-EPFLISWNG-------LQQRRNSWQDGVY----G--TTCPIPPGKNF 112 (543)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG-------~~~~~~~~~DG~p----~--tq~~i~PG~~~ 112 (543)
...+++||+. .|.|.|+.| ++|+|+.|... ....++++| ..+. ....||.+ . ....|.|||++
T Consensus 201 gd~~lvNG~~-~p~~~v~~~-~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~-vIa~DG~~~~~P~~~~~l~l~pgeR~ 277 (534)
T 3abg_A 201 GDVIHVNGQP-WPFKNVEPR-KYRFRFLDAAVSRSFGLYFADTDAIDTRLPFK-VIASDSGLLEHPADTSLLYISMAERY 277 (534)
T ss_dssp CSEEEETTEE-SCBCBCCSS-EEEEEEEECCSSCCEEEEECCSSSTTCCCCEE-EEEETTEEEEEEEEESCEEECTTCEE
T ss_pred CceeccCCcc-CceEEecCc-EEEEEEEecCCcceEEEEEecccCcCCCccEE-EEEeCCCcccCceEeceEEECCccEE
Confidence 4679999995 799999985 99999999975 456788876 2222 24689852 2 44679999999
Q ss_pred EEEEEeCCCcc-cceecCCchhh--h-----hccceeEEEEecCCCCCCCCCCCCCceEEEeeeee-eccHHHHHHHhcc
Q 009127 113 TYVLQAKDQIG-SYFYFPSFLFH--K-----AAGAFGGIRIWSRPRIPVPFPPPAGDFTVLAGDWY-RSNHYVLRRLLDS 183 (543)
Q Consensus 113 ~y~f~~~~~~G-t~wYH~H~~~q--~-----~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~-~~~~~~~~~~~~~ 183 (543)
+.-+++.+.+| +||........ . .....+.+-+........+. ....+..+.... ..........+..
T Consensus 278 dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~---~~~~P~~L~~~~~p~~~~~~~~~~~~ 354 (534)
T 3abg_A 278 EVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQPD---TSVVPANLRDVPFPSPTTNTPRQFRF 354 (534)
T ss_dssp EEEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSCSC---CCCCCCCCCCCSCCCCCCCCCEEEEC
T ss_pred EEEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcCCC---CCCCccccccCCCCCCccccceEEEE
Confidence 99999964467 58876532100 0 00111222222211100000 000000000000 0000000000000
Q ss_pred CCCCCCCCeEEEcCCCCC---cc-eEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEE-cCc---cccc---cccCe
Q 009127 184 GHNLPFPDGLLINGRGWN---GY-TFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEV-EGS---HTLQ---NTYAA 252 (543)
Q Consensus 184 g~~~~~~~~~liNG~~~~---~p-~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~-DG~---~~~p---~~~~~ 252 (543)
+ .....|+|||+.+. .+ .++++.|++++|.|.|.+....|+||||||.|+|++. +|. ...+ ...|+
T Consensus 355 ~---~~~~~w~iNG~~f~~~~~p~l~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g~~~~~~~~~~~~~rDT 431 (534)
T 3abg_A 355 G---RTGPTWTINGVAFADVQNRLLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDV 431 (534)
T ss_dssp S---CCCSTTCCCCBTTBCTTSCCCCEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSCCSSSCCCSGGGSCBSE
T ss_pred e---ccCceeEECCcccCCCCCcceeeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCCCCcCcCCccccCCcCe
Confidence 0 01235789999862 12 4689999999999999886558999999999999999 663 1112 46899
Q ss_pred EEEcCCCeEEEEEEeCCCCcceEEEEeeccCCCccceEEEEEecC
Q 009127 253 LDIHLGQTYSVLVTMDQAPQDYYIVVSSRFTPRVLTTTAILHYSN 297 (543)
Q Consensus 253 v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~il~y~~ 297 (543)
+.+.||+++.|.+.+.+.+|.|.++|+...... ....+.+.+..
T Consensus 432 V~v~pg~~v~I~~~~adnpG~w~~HCHil~H~d-~GMm~~~~V~~ 475 (534)
T 3abg_A 432 VWLGRRETVVVEAHYAPFPGVYMFHCHNLIHED-HDMMAAFNATV 475 (534)
T ss_dssp ECCCSSEEEEEEEECCSCCEEEEEEESCHHHHH-TTCEEEEEECS
T ss_pred EEcCCCCEEEEEEEECCCCccEEEecChHHHHh-cCCceEEEEEe
Confidence 999999999999984337999999998753321 12334455543
No 72
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.34 E-value=2.3e-12 Score=137.70 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=75.0
Q ss_pred CCeeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCc
Q 009127 43 LGVKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQI 122 (543)
Q Consensus 43 ~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~ 122 (543)
++....+|++|+++|+|+|+|++||+|+++++|.....-. +||+.+.. .|+ ...|.||++++|.|++ +++
T Consensus 497 ~~v~V~m~~~n~~f~pp~I~V~~Gd~V~~~ltN~d~~~Dv--~Hgf~ip~----~gv---~~~i~PG~t~t~~Fta-~~p 566 (595)
T 1fwx_A 497 NKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDL--THGFTMGN----YGV---AMEIGPQMTSSVTFVA-ANP 566 (595)
T ss_dssp TEEEEEEEEETTEESCSEEEEETTCEEEEEEEECCCSTTC--CEEEEETT----TTE---EEEECTTCEEEEEEEC-CSC
T ss_pred CccceeEEEecCcccCCEEEEECCCEEEEEEEeCCCCCCc--eeeEEecC----CCc---ceeeCCCCeEEEEEEC-CCC
Confidence 5677899999999999999999999999999998653111 35554432 233 2679999999999999 589
Q ss_pred ccceecCCc---hhhhhccceeEEEEecCC
Q 009127 123 GSYFYFPSF---LFHKAAGAFGGIRIWSRP 149 (543)
Q Consensus 123 Gt~wYH~H~---~~q~~~Gl~G~liV~~~~ 149 (543)
|+||||||. ..| .||.|.|+|++++
T Consensus 567 GtY~yhC~e~Cg~~H--~gM~G~IiV~p~~ 594 (595)
T 1fwx_A 567 GVYWYYCQWFCHALH--MEMRGRMLVEPKE 594 (595)
T ss_dssp EEEEEECCSCCSTTC--TTCEEEEEEECC-
T ss_pred EEEEEECCCCCCCCc--cCCEEEEEEEcCC
Confidence 999999993 233 3999999999753
No 73
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=99.29 E-value=2.1e-10 Score=123.63 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=144.2
Q ss_pred EEEEEECCcCC----------------CceEEEecCCEEEEEEEECCC-CCceeecCcccCCCCCCCCCCCC-----CCC
Q 009127 47 QQGILINGQFP----------------GPQIDAVTNDNLIISVYNYLR-EPFLISWNGLQQRRNSWQDGVYG-----TTC 104 (543)
Q Consensus 47 ~~~~~~Ng~~p----------------gP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~p~-----tq~ 104 (543)
...+++||+.. .++|+|++|+++++|+.|... ....+|++|..+.. ...||.+. ...
T Consensus 225 ~d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~V-Ia~DG~~v~P~~~~~l 303 (580)
T 3sqr_A 225 LENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTV-IANDLVPIVPYTTDTL 303 (580)
T ss_dssp BSEEEETTBCCCCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESSE
T ss_pred CceEEECCcccCCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEE-EEeCCccCCceEeeEE
Confidence 35688999742 379999999999999999965 45688998876543 46899762 345
Q ss_pred cCCCCCeEEEEEEeCCCcccceecCCchh-----hhhccceeEEEEecCCCCCCCCC-CC-CCceEEEeee--eeeccHH
Q 009127 105 PIPPGKNFTYVLQAKDQIGSYFYFPSFLF-----HKAAGAFGGIRIWSRPRIPVPFP-PP-AGDFTVLAGD--WYRSNHY 175 (543)
Q Consensus 105 ~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~-----q~~~Gl~G~liV~~~~~~~~~~~-~~-~~e~~l~~~d--~~~~~~~ 175 (543)
.|.|||+++..+++.+..|.||....... +....-.| ++.........|.. .. ..+. .+.+ .......
T Consensus 304 ~i~pGqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~~~~~a-iL~Y~~~~~~~P~~~~~~~~~~--~~~~~~~~L~P~~ 380 (580)
T 3sqr_A 304 LIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATG-ILRYDSSSIANPTSVGTTPRGT--CEDEPVASLVPHL 380 (580)
T ss_dssp EECTTCEEEEEEECCSCSSEEEEECCCCTTTSCBTTGGGCEE-EEESSTTCCCCCCCCCCCCCCC--SCCSCGGGCCBSS
T ss_pred EEccceEEEEEEEeCCCCCeEEEEEecccccCccCCCCceEE-EEEECCCCCCCCCCCCCCccch--hhcccccccccCC
Confidence 69999999999999756899999987432 11111233 33333221111110 00 0000 0000 0000000
Q ss_pred --HHH------HHhccCCCCCCCCeEEEcCCCCC----cc-----------------eEEE----ecCCEEEEEEEEcC-
Q 009127 176 --VLR------RLLDSGHNLPFPDGLLINGRGWN----GY-----------------TFTV----EPGRTYRFRISNVG- 221 (543)
Q Consensus 176 --~~~------~~~~~g~~~~~~~~~liNG~~~~----~p-----------------~~~v----~~G~~~rlRiiN~~- 221 (543)
.+. ..+..+ ......+.|||..+. .| .+.+ +.|+++.|.|-|.+
T Consensus 381 ~~~~~~~~~~~~~l~~~--~~~~~~w~iN~~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~VeiVi~n~~~ 458 (580)
T 3sqr_A 381 ALDVGGYSLVDEQVSSA--FTNYFTWTINSSSLLLDWSSPTTLKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTG 458 (580)
T ss_dssp CCBCCSEEEEEEEEEEE--ESSSEEEEETTBCCCCCTTSCHHHHHHTTCCCCCGGGCEEEECC----CCEEEEEEEECSS
T ss_pred CCCCCCccceEEEEEec--cCCceeEEECCEecccCCCCCchhhhhcCCccCCCCcceeecccccCCCcEEEEEEeCCCc
Confidence 000 000000 001124677887541 11 2334 35999999999987
Q ss_pred -CcceEEEEEeCCeeEEEEEcCc------------cccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 222 -LTTSINFRIQGHSMKLVEVEGS------------HTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 222 -~~~~~~~~i~g~~~~via~DG~------------~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
. ..|+||||||.|+|++.+.+ +..|...|++.+.||+.+.+.++++ .||.|.++|+...
T Consensus 459 ~~-~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~ad-NPG~W~~HCHi~~ 530 (580)
T 3sqr_A 459 FG-IWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLD-NPGSWLLHCHIAW 530 (580)
T ss_dssp SC-CCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESC-SCEEEEEEECSHH
T ss_pred cc-cceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcC-CCeeeEEEECcHH
Confidence 4 48999999999999998532 2247789999999999999999999 7999999998653
No 74
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=99.21 E-value=4.8e-11 Score=99.57 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=62.6
Q ss_pred CCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCcCCCCCeEEEEEEeCCCcccceecCCc
Q 009127 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSF 131 (543)
Q Consensus 53 Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~ 131 (543)
+..|..+.|++++||+|++ .|..+..+++|+++. .||... .+..|.||++++|.| +++|+|||||+.
T Consensus 27 ~~~F~P~~i~v~~Gd~V~~--~N~d~~~H~v~~~~~-------~~g~~~~~~~~~~pG~~~~~tf---~~~G~y~y~C~~ 94 (105)
T 2ov0_A 27 KMKYETPELHVKVGDTVTW--INREAMPHNVHFVAG-------VLGEAALKGPMMKKEQAYSLTF---TEAGTYDYHCTP 94 (105)
T ss_dssp TTEESSSEEEECTTCEEEE--EECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred ecEEcCCEEEECCCCEEEE--EECCCCCEEEEEcCC-------CCCcccccccccCCCCEEEEEe---CCCEEEEEEeCC
Confidence 4466678999999999755 699888889998762 356654 456789999999988 479999999986
Q ss_pred hhhhhccceeEEEEe
Q 009127 132 LFHKAAGAFGGIRIW 146 (543)
Q Consensus 132 ~~q~~~Gl~G~liV~ 146 (543)
+. ||.|.|+|+
T Consensus 95 H~----gM~G~i~V~ 105 (105)
T 2ov0_A 95 HP----FMRGKVVVE 105 (105)
T ss_dssp CT----TCEEEEEEC
T ss_pred CC----CCEEEEEEC
Confidence 43 999999985
No 75
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.20 E-value=1.6e-11 Score=108.11 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=72.6
Q ss_pred EEecCCCcEEEEEEEeCCCC-CCCeeecCCCeEEE-------eecC--CCCCCCCCCCCCCCCCCcceeEEeCCCCEEEE
Q 009127 413 VMAANFREFVEIVFQNWEDT-VQSYHIDGYSFFVV-------GMDG--GQWTPASRTRYNLRDTVARSTTQVYPRSWTAI 482 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~-~HP~HlHG~~F~Vl-------~~~~--g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~i 482 (543)
.++++.|++|+|+|.|.+.. .|.||+|+..+.+. -... ..+.+.. ....++||..|.|++...|
T Consensus 36 ~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~------~~~~~~~t~~l~pGet~~v 109 (139)
T 2aan_A 36 ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPAD------KSNIIAESPLANGNETVEV 109 (139)
T ss_dssp EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSC------CTTEEEECCCBCTTCEEEE
T ss_pred eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcc------cccccccccccCCCCEEEE
Confidence 46789999999999999888 89999998653211 0100 0111110 1235789999999999999
Q ss_pred EEEecCcccceeeecchhhhhcccEEEEEEe
Q 009127 483 YMALDNVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 483 rf~adnpG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|.+++||.|.||||+..|+. ||+..|.|.
T Consensus 110 ~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 110 TFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp EEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred EEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 999999999999999999999 999999883
No 76
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=99.17 E-value=6.7e-10 Score=121.94 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=76.0
Q ss_pred CeEEEcCCCC-CcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccc------------------------
Q 009127 191 DGLLINGRGW-NGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHT------------------------ 245 (543)
Q Consensus 191 ~~~liNG~~~-~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~------------------------ 245 (543)
..+.+||+.+ +...+.++.|++++|.|.|.+.. .|+||||||.|+|++.+|...
T Consensus 459 ~~~~~n~~~~~~~~~~~~~~g~~~~w~i~N~~~~-~HP~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (612)
T 3gyr_A 459 KTYRRTARTFNDGLGFTIGEGTHEQWTFLNLSPI-LHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPL 537 (612)
T ss_dssp EEEEEEECSTTSCCCEEEETTCEEEEEEEECSSS-CEEEEESSCEEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCC
T ss_pred ccccccCccCCCCcceEeCCCCEEEEEEEcCCCC-CcCEeECCCcEEEEeecCCcCccccccccccccccccccccccCc
Confidence 4578888875 35678999999999999999886 799999999999998765421
Q ss_pred ---cccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 246 ---LQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 246 ---~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
++..+|++.+.+|+.+.|.+++.+.+|.|.++|+...
T Consensus 538 ~~~~~~~kDTv~v~~~~~v~i~~rfadnpG~w~~HCHil~ 577 (612)
T 3gyr_A 538 APNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLE 577 (612)
T ss_dssp CTTCSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHH
T ss_pred ccccCCCCcEEEECCCCEEEEEEEeCCCCcceEEcCCChH
Confidence 2335799999999999999996658999999998754
No 77
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.15 E-value=3.7e-11 Score=100.19 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=65.9
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe-cCccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMAL-DNVGM 491 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a-dnpG~ 491 (543)
.+.++.|++|+| .|.+...|+||+||..|... .+. .. +....|+..+.||+...++|.+ +.||.
T Consensus 20 ~i~v~~Gd~V~~--~N~~~~~H~v~~~~~~~~~~---~g~----~~------~~~~~~~~~i~pG~~~~~~f~~~~~~G~ 84 (105)
T 3cvb_A 20 NVTVHPGDTVKW--VNNKLPPHNILFDDKQVPGA---SKE----LA------DKLSHSQLMFSPGESYEITFSSDFPAGT 84 (105)
T ss_dssp EEEECTTEEEEE--EECSSCCEEEEECTTSSGGG---CHH----HH------HHHCEEEEECSTTCEEEEEECTTSCSEE
T ss_pred EEEEcCCCEEEE--EECCCCCCeEEEeCCCCCcc---ccc----cc------ccccccccccCCCCeEEEEEecCCCCee
Confidence 467899999876 48877899999999876431 000 00 0112588999999999999998 79999
Q ss_pred ceeeecchhhhhcccEEEEEEe
Q 009127 492 WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 492 w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.|||| .|..+||++.+.|.
T Consensus 85 y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 85 YTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEeC--CchhcCCEEEEEEc
Confidence 999999 69999999999985
No 78
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=99.13 E-value=1.2e-10 Score=97.21 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=63.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC-----CCCCcCCCCCeEEEEEEeCCCcccceecCCch
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY-----GTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL 132 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p-----~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~ 132 (543)
.+.|++++||+|++ .|.....+++|+|+.... ..+|.. .+...+.||++++|.|++++++|+||||||
T Consensus 19 P~~i~v~~Gd~V~~--~n~~~~~H~~~~~~~~~~---~~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~-- 91 (106)
T 2gim_A 19 PAKLTIKPGDTVEF--LNNKVPPHNVVFDAALNP---AKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE-- 91 (106)
T ss_dssp SSEEEECTTCEEEE--EECSSSCCCBEECSSSST---TCCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECT--
T ss_pred CCEEEECCCCEEEE--EECCCCCceEEEeCCCCc---ccccccchhccccceeeCCCCEEEEEEecCCCCceEEEEeC--
Confidence 47999999999765 588767888888875432 123320 123568999999999987557999999999
Q ss_pred hhhhccceeEEEEec
Q 009127 133 FHKAAGAFGGIRIWS 147 (543)
Q Consensus 133 ~q~~~Gl~G~liV~~ 147 (543)
.|...||.|.|+|.+
T Consensus 92 ~H~~~GM~G~i~V~~ 106 (106)
T 2gim_A 92 PHRGAGMVGKITVAG 106 (106)
T ss_dssp TTGGGTCEEEEEECC
T ss_pred ChhhcCcEEEEEEcC
Confidence 677789999999974
No 79
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.01 E-value=1.1e-09 Score=96.25 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=67.2
Q ss_pred cCCCceEEEecCCEEEEEEEECCCC-CceeecCcccC-----------------CCCCCCCCCC-CCCCcCCCCCeEEEE
Q 009127 55 QFPGPQIDAVTNDNLIISVYNYLRE-PFLISWNGLQQ-----------------RRNSWQDGVY-GTTCPIPPGKNFTYV 115 (543)
Q Consensus 55 ~~pgP~i~v~~Gd~v~i~~~N~l~~-~~~iH~HG~~~-----------------~~~~~~DG~p-~tq~~i~PG~~~~y~ 115 (543)
+|--+.|+|++||+|+++++|.-.. .+++++|+... ...+..+... .....|.||+++++.
T Consensus 31 ~F~p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~ 110 (139)
T 2aan_A 31 AFDKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVT 110 (139)
T ss_dssp SBSCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEE
T ss_pred EEcCCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEE
Confidence 4545799999999999999998766 78888876421 0000011110 122458999999999
Q ss_pred EEeCCCcccceecCCchhhhhccceeEEEEe
Q 009127 116 LQAKDQIGSYFYFPSFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 116 f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (543)
|+++ ++|+|+||||...|.. ||.|.|+|+
T Consensus 111 f~~~-~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 111 FTAP-AAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp EECC-SSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred EECC-CCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 9984 7999999999888888 999999984
No 80
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.89 E-value=4.2e-09 Score=86.85 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCch
Q 009127 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFL 132 (543)
Q Consensus 53 Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~ 132 (543)
|..|-...|++++||+|++.++|.....+++...+... ...+.||++.+|.|+. +++|+|.|+|.
T Consensus 22 ~~~F~P~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~~------------~~~~~pg~~~~~~~t~-~~~G~Y~y~C~-- 86 (100)
T 4hci_A 22 DDYFNPNVITIPINESTTLLLKNKGKSEHTFTIKKLGI------------DVVVESGKEKNITVKP-KSAGTYELICR-- 86 (100)
T ss_dssp TTEEESSEEEECTTSCEEEEEEECSSSCEEEEEGGGTE------------EEEECTTCEEEEEECC-CSCEEEEEECT--
T ss_pred CCEEeCCEEEECCCCEEEEEEEcCCCceEEEEEecCCc------------ceeecCCcceeEEEec-ccCceEEEECc--
Confidence 44554469999999999999999977776666655422 1457899999999998 58999999996
Q ss_pred hhhhccceeEEEEe
Q 009127 133 FHKAAGAFGGIRIW 146 (543)
Q Consensus 133 ~q~~~Gl~G~liV~ 146 (543)
.+...||.|.|+|+
T Consensus 87 ~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 87 YHLLKGMEGKVIVK 100 (100)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred cccCCCCEEEEEEC
Confidence 46667999999996
No 81
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.88 E-value=3.7e-09 Score=88.15 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=63.2
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe-cCccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMAL-DNVGM 491 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a-dnpG~ 491 (543)
.+.++.|++|+|+ |.+...|+||+|+..+.. . .|. +. ....+|++.+.+|+...+.|.+ +.||.
T Consensus 21 ~i~v~~Gd~V~~~--n~~~~~H~~~~~~~~~~~--~-~g~----~~------~~~~~~~~~~~pG~~~~~~f~~~~~~G~ 85 (106)
T 2gim_A 21 KLTIKPGDTVEFL--NNKVPPHNVVFDAALNPA--K-SAD----LA------KSLSHKQLLMSPGQSTSTTFPADAPAGE 85 (106)
T ss_dssp EEEECTTCEEEEE--ECSSSCCCBEECSSSSTT--C-CHH----HH------HHHCBCSCCCSTTCEEEEECCTTCCSEE
T ss_pred EEEECCCCEEEEE--ECCCCCceEEEeCCCCcc--c-ccc----cc------hhccccceeeCCCCEEEEEEecCCCCce
Confidence 4678999999886 777788999999764311 0 000 00 0011467788899999998887 89999
Q ss_pred ceeeecchhhhhcccEEEEEEe
Q 009127 492 WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 492 w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.|||| .|.++||++.+.|.
T Consensus 86 y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 86 YTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEeC--ChhhcCcEEEEEEc
Confidence 999999 79999999999985
No 82
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.87 E-value=1.4e-08 Score=89.14 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=67.0
Q ss_pred cCCCceEEEecCCEEEEEEEE--CCCCCceeecCccc------------C----CCCCCCCCCC--CCCCcCCCCCeEEE
Q 009127 55 QFPGPQIDAVTNDNLIISVYN--YLREPFLISWNGLQ------------Q----RRNSWQDGVY--GTTCPIPPGKNFTY 114 (543)
Q Consensus 55 ~~pgP~i~v~~Gd~v~i~~~N--~l~~~~~iH~HG~~------------~----~~~~~~DG~p--~tq~~i~PG~~~~y 114 (543)
+|-.+.|+|++||+|+++++| .....++++++... . ...+..|... .....|.||++.++
T Consensus 29 ~F~P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~ 108 (140)
T 1qhq_A 29 AFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSV 108 (140)
T ss_dssp SBSCSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEE
T ss_pred eEeCCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEE
Confidence 344479999999999999999 66677777776310 0 0000001111 11246899999999
Q ss_pred EEEeCCCcccceecCCchhhhhccceeEEEEec
Q 009127 115 VLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWS 147 (543)
Q Consensus 115 ~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 147 (543)
.|++ +++|+|||||+...+...||.|.|+|.+
T Consensus 109 ~~~~-~~~G~y~f~C~~~~H~~~GM~g~i~V~p 140 (140)
T 1qhq_A 109 TFRT-PAPGTYLYICTFPGHYLAGMKGTLTVTP 140 (140)
T ss_dssp EEEC-CSSEEEEEECCSTTTTTTTCEEEEEEEC
T ss_pred EEEe-CCCeeEEEEeCCcCHhhcCCEEEEEEcC
Confidence 9998 4799999999988888889999999974
No 83
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.83 E-value=7.1e-09 Score=89.96 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=56.6
Q ss_pred CCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCcCCCCCeEEEEEEeCCCcccceecCCc
Q 009127 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSF 131 (543)
Q Consensus 53 Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~ 131 (543)
+..|-.+.|++++||+|++ .|.....+++++... .+|... ....+.||++++|.| +++|+|+|||-.
T Consensus 54 ~~~F~P~~i~V~~GdtV~~--~N~d~~~H~v~~~~~-------~~g~~~~~s~~l~pG~t~~~tF---~~~G~y~y~C~~ 121 (132)
T 3c75_A 54 KMKYLTPEVTIKAGETVYW--VNGEVMPHNVAFKKG-------IVGEDAFRGEMMTKDQAYAITF---NEAGSYDYFCTP 121 (132)
T ss_dssp TTEESSSEEEECTTCEEEE--EECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred eeEEeCCEEEECCCCEEEE--EECCCCceEEEEeCC-------CCCcccccccccCCCCEEEEEc---CCCEEEEEEeCC
Confidence 4455557999999999865 488766666665432 123222 334689999999988 379999999975
Q ss_pred hhhhhccceeEEEEe
Q 009127 132 LFHKAAGAFGGIRIW 146 (543)
Q Consensus 132 ~~q~~~Gl~G~liV~ 146 (543)
+. ||.|.|+|+
T Consensus 122 H~----gM~G~I~V~ 132 (132)
T 3c75_A 122 HP----FMRGKVIVE 132 (132)
T ss_dssp CT----TCEEEEEEC
T ss_pred Cc----CCEEEEEEC
Confidence 32 999999985
No 84
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.80 E-value=4.3e-09 Score=86.36 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=59.0
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCC--CCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhh
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDG--VYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHK 135 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG--~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~ 135 (543)
.+.|++++||+|+ ++|.....+++|+|+...+. ..|. ...+...+.||+++++.|. ++|+|+|||+ .|.
T Consensus 17 P~~i~v~~G~~V~--~~n~~~~~H~~~~~~~~~p~--~~~~~~~~~~~~~~~pG~~~~~tf~---~~G~y~y~C~--~H~ 87 (98)
T 2plt_A 17 PKTLTIKSGETVN--FVNNAGFPHNIVFDEDAIPS--GVNADAISRDDYLNAPGETYSVKLT---AAGEYGYYCE--PHQ 87 (98)
T ss_dssp SSEEEECTTCEEE--EEECSSCCEEEEECGGGSCT--TCCHHHHCEEEEECSTTCEEEEECC---SCEEEEEECG--GGG
T ss_pred CCEEEECCCCEEE--EEECCCCceEEEEeCCCCCC--ccccccccccceecCCCCEEEEEeC---CCeEEEEEcC--Ccc
Confidence 3789999999876 47887778999999863211 1111 0001245899999999884 6999999999 566
Q ss_pred hccceeEEEEe
Q 009127 136 AAGAFGGIRIW 146 (543)
Q Consensus 136 ~~Gl~G~liV~ 146 (543)
..||.|.|+|+
T Consensus 88 ~~gM~G~i~V~ 98 (98)
T 2plt_A 88 GAGMVGKIIVQ 98 (98)
T ss_dssp GGTCEEEEEEC
T ss_pred ccCCeEEEEEC
Confidence 77999999984
No 85
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.74 E-value=1.6e-08 Score=82.88 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=57.7
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA 137 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (543)
.+.|++++||+|++ .|.....+++++++...++. ..++.......+.||+++++.| +++|+|+|||+ .|...
T Consensus 18 P~~i~v~~G~~V~~--~n~~~~~H~~~~~~~~~pg~-~~~~~~~~~~~~~pG~~~~~tf---~~~G~y~~~C~--~H~~~ 89 (98)
T 1pcs_A 18 PSTVTIKAGEEVKW--VNNKLSPHNIVFDADGVPAD-TAAKLSHKGLLFAAGESFTSTF---TEPGTYTYYCE--PHRGA 89 (98)
T ss_dssp SSEEEECTTCEEEE--EECSSCCEEEEECCSSSCHH-HHHHHCEEEEECSTTCEEEEEC---CSCEEEEEECG--GGTTT
T ss_pred CCEEEECCCCEEEE--EECCCCCcEEEEeCCCCCcc-ccccccccccccCCCCEEEEEc---CCCeEEEEEcC--Ccccc
Confidence 46899999999765 48766788888887532100 0000001124589999999988 47999999999 56778
Q ss_pred cceeEEEEe
Q 009127 138 GAFGGIRIW 146 (543)
Q Consensus 138 Gl~G~liV~ 146 (543)
||.|.|+|+
T Consensus 90 gM~G~i~V~ 98 (98)
T 1pcs_A 90 GMVGKVVVE 98 (98)
T ss_dssp TCEEEEEEC
T ss_pred CCeEEEEEC
Confidence 999999985
No 86
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.74 E-value=1.8e-08 Score=81.27 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=56.6
Q ss_pred CCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhh
Q 009127 56 FPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHK 135 (543)
Q Consensus 56 ~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~ 135 (543)
|-.+.|++++||+|++ .|.....++++.++.. . . + .....+.||+++++.| +++|+|||||+ .+.
T Consensus 16 f~P~~i~v~~Gd~V~~--~n~~~~~H~v~~~~~~--~--~--~--~~~~~~~~g~~~~~~f---~~~G~y~~~C~--~H~ 80 (91)
T 1bxv_A 16 FEPSTIEIQAGDTVQW--VNNKLAPHNVVVEGQP--E--L--S--HKDLAFSPGETFEATF---SEPGTYTYYCE--PHR 80 (91)
T ss_dssp EESSEEEECTTCEEEE--EECSSCCEEEEETTCG--G--G--C--EEEEECSTTCEEEEEC---CSCEEEEEECT--TTG
T ss_pred EeCCEEEECCCCEEEE--EECCCCCcEEEEeCCC--c--c--C--cccceeCCCCEEEEEe---CCCEEEEEEeC--CCc
Confidence 3347999999999865 5776677888887621 0 0 0 0124688999998887 47999999999 555
Q ss_pred hccceeEEEEe
Q 009127 136 AAGAFGGIRIW 146 (543)
Q Consensus 136 ~~Gl~G~liV~ 146 (543)
..||.|.|+|+
T Consensus 81 ~~gM~g~i~V~ 91 (91)
T 1bxv_A 81 GAGMVGKIVVQ 91 (91)
T ss_dssp GGTCEEEEEEC
T ss_pred cCCCEEEEEEC
Confidence 66999999985
No 87
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.71 E-value=1.9e-08 Score=88.38 Aligned_cols=96 Identities=9% Similarity=-0.009 Sum_probs=70.7
Q ss_pred EEecCCCcEEEEEEEe--CCCCCCCeeecCC--CeEEEe-ec--CC---CCCCCCCCCCCCCCCCcceeEEeCCCCEEEE
Q 009127 413 VMAANFREFVEIVFQN--WEDTVQSYHIDGY--SFFVVG-MD--GG---QWTPASRTRYNLRDTVARSTTQVYPRSWTAI 482 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N--~~~~~HP~HlHG~--~F~Vl~-~~--~g---~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~i 482 (543)
.++++.|++|+|++.| .+.+.|.||++.. .|.-+. .+ .+ .|-+.. -....+++|..|.+|....+
T Consensus 34 ~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~t~~l~pG~~~~~ 108 (140)
T 1qhq_A 34 SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP-----DTPNALAWTAMLNAGESGSV 108 (140)
T ss_dssp EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT-----TCTTEEEECCCBCTTEEEEE
T ss_pred eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc-----ccccccccceeeCCCceeEE
Confidence 3678899999999999 6678999999853 121100 00 00 010000 00134788999999999999
Q ss_pred EEEecCcccceeeecchhhhhcccEEEEEEe
Q 009127 483 YMALDNVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 483 rf~adnpG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|.++.||.|.|||++..|...||...+.|.
T Consensus 109 ~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 109 TFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp EEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred EEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 9999999999999999999999999999885
No 88
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.67 E-value=6.9e-08 Score=79.08 Aligned_cols=78 Identities=12% Similarity=-0.045 Sum_probs=60.2
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCc-ceeEEeCCCCEEEEEEEecCccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVA-RSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~-rDTv~vp~~g~v~irf~adnpG~ 491 (543)
.+.++.|++|.|+ |.+...|.||+|+..+- +.. .+.| +|+..+.+|+...+.| +.||.
T Consensus 20 ~i~v~~G~~V~~~--n~~~~~H~~~~~~~~~p--g~~---------------~~~~~~~~~~~~pG~~~~~tf--~~~G~ 78 (98)
T 1pcs_A 20 TVTIKAGEEVKWV--NNKLSPHNIVFDADGVP--ADT---------------AAKLSHKGLLFAAGESFTSTF--TEPGT 78 (98)
T ss_dssp EEEECTTCEEEEE--ECSSCCEEEEECCSSSC--HHH---------------HHHHCEEEEECSTTCEEEEEC--CSCEE
T ss_pred EEEECCCCEEEEE--ECCCCCcEEEEeCCCCC--ccc---------------cccccccccccCCCCEEEEEc--CCCeE
Confidence 4788999999887 77678899999874321 000 0012 5788999999888866 89999
Q ss_pred ceeeecchhhhhcccEEEEEEe
Q 009127 492 WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 492 w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.|||| .|..+||++.+.|.
T Consensus 79 y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 79 YTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEcC--CccccCCeEEEEEC
Confidence 999999 59999999999883
No 89
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.66 E-value=5.5e-08 Score=79.52 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=55.9
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC---CCCCcCCCCCeEEEEEEeCCCcccceecCCchhhh
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY---GTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHK 135 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p---~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~ 135 (543)
+.|++++||+|+ +.|.-...++++.++... .+|.. .....+.||+++++.| +++|+|+|||+ .|.
T Consensus 19 ~~i~v~~G~~V~--~~n~~~~~H~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~--~H~ 86 (97)
T 1b3i_A 19 KALSISAGDTVE--FVMNKVGPHNVIFDKVPA-----GESAPALSNTKLAIAPGSFYSVTL---GTPGTYSFYCT--PHR 86 (97)
T ss_dssp SEEEECTTCEEE--EEECSSCCCCBEEEECCT-----TSCHHHHCBCCCCCSCSCCEEEEC---CSCSEEEEECS--STT
T ss_pred CEEEECCCCEEE--EEECCCCCeEEEEeCCCC-----ccccccccccceecCCCCEEEEEe---CCCeEEEEEcc--Chh
Confidence 689999999964 558765677777776432 11211 1124589999999988 47999999999 566
Q ss_pred hccceeEEEEe
Q 009127 136 AAGAFGGIRIW 146 (543)
Q Consensus 136 ~~Gl~G~liV~ 146 (543)
..||.|.|+|+
T Consensus 87 ~~gM~G~i~V~ 97 (97)
T 1b3i_A 87 GAGMVGTITVE 97 (97)
T ss_dssp TTTCEEEEEEC
T ss_pred hcCCEEEEEEC
Confidence 67999999984
No 90
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.65 E-value=1.1e-07 Score=80.94 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=53.6
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhcc
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAAG 138 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~G 138 (543)
..|+|++||+|++.+.|. ++++..+.. ..-+|. ....+.||++++|.| +++|+|||+|. .|...|
T Consensus 21 ~~i~V~~GdtV~f~~~~~---~H~v~~~~~-----~~P~g~--~~f~~~pg~t~s~TF---~~pG~y~y~C~--~H~~~G 85 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDK---SHNVEAIKE-----ILPEGV--ESFKSKINESYTLTV---TEPGLYGVKCT--PHFGMG 85 (123)
T ss_dssp SEEEECTTEEEEEEESST---TCCCEECTT-----SSCTTC--CCCBCCTTCCEEEEE---CSCEEEEEECG--GGTTTT
T ss_pred CEEEECCCCEEEEEECCC---CceEEEcCC-----cCCCCc--cceecCCCCEEEEEe---CCCeEEEEEeC--CCCcCC
Confidence 699999999988877762 333332211 011232 124567999999988 47999999998 667789
Q ss_pred ceeEEEEecC
Q 009127 139 AFGGIRIWSR 148 (543)
Q Consensus 139 l~G~liV~~~ 148 (543)
|.|.|+|.++
T Consensus 86 M~G~I~V~~~ 95 (123)
T 3erx_A 86 MVGLVQVGDA 95 (123)
T ss_dssp CEEEEEESSS
T ss_pred cEEEEEECCC
Confidence 9999999973
No 91
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.65 E-value=6.6e-08 Score=79.20 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=60.7
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|++|+| .|.+...|.||+|+..+ +.. .+. ...++|+..+.+|+...++| +.||.|
T Consensus 19 ~i~v~~G~~V~~--~n~~~~~H~~~~~~~~~-----------p~~---~~~-~~~~~~~~~~~pG~~~~~tf--~~~G~y 79 (98)
T 2plt_A 19 TLTIKSGETVNF--VNNAGFPHNIVFDEDAI-----------PSG---VNA-DAISRDDYLNAPGETYSVKL--TAAGEY 79 (98)
T ss_dssp EEEECTTCEEEE--EECSSCCEEEEECGGGS-----------CTT---CCH-HHHCEEEEECSTTCEEEEEC--CSCEEE
T ss_pred EEEECCCCEEEE--EECCCCceEEEEeCCCC-----------CCc---ccc-ccccccceecCCCCEEEEEe--CCCeEE
Confidence 477899999987 68777899999987421 000 000 01246889999999888865 689999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|||| .|.++||++.+.|.
T Consensus 80 ~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 80 GYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEECG--GGGGGTCEEEEEEC
T ss_pred EEEcC--CccccCCeEEEEEC
Confidence 99999 59999999999883
No 92
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.63 E-value=6.8e-08 Score=79.74 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=55.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCC--------CCCCCCCCCcCCCCCeEEEEEEeCCCcccceecC
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSW--------QDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFP 129 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~--------~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~ 129 (543)
.+.|+|++||+|+ +.|.-...++++++.- .... +.+.......+.||+++++.| +++|+|+|||
T Consensus 16 P~~i~v~~G~tV~--~~n~~~~~H~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf---~~~G~y~y~C 87 (102)
T 1kdj_A 16 PDSITVSAGEAVE--FTLVGETGHNIVFDIP---AGAPGTVASELKAASMDENDLLSEDEPSFKAKV---STPGTYTFYC 87 (102)
T ss_dssp SSEEEECTTCCEE--EEECSSSCBCCEECCC---TTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC---CSCEEEEEEC
T ss_pred CCEEEECCCCEEE--EEECCCCCeEEEEeCc---ccccccccchhhcccccccceecCCCCEEEEEe---CCCeEEEEEe
Confidence 4789999999976 4587656777776621 0000 001100124579999999988 4799999999
Q ss_pred CchhhhhccceeEEEEe
Q 009127 130 SFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 130 H~~~q~~~Gl~G~liV~ 146 (543)
+ .|...||.|.|+|+
T Consensus 88 ~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 88 T--PHKSANMKGTLTVK 102 (102)
T ss_dssp S--TTGGGTCEEEEEEC
T ss_pred C--CCcccCCeEEEEEC
Confidence 9 67778999999985
No 93
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.62 E-value=5e-08 Score=83.59 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=53.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA 137 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (543)
.+.|+|++||+|++.+.|. ++++..+.- ..-||. ....+.||++++|.| +++|+|||||. .|...
T Consensus 22 P~~i~V~~GDtVtf~n~~~---~H~v~~~~~-----~~P~g~--~~f~s~pGet~s~TF---~~pG~y~y~C~--~H~~~ 86 (127)
T 3tu6_A 22 PAVIRAQPGDTVTFVAKDK---GHNSALMKG-----GAPEGA--ETWKGKINEEITVTL---SKPGVYMYQCA--PHVGM 86 (127)
T ss_dssp SSEEEECTTCEEEEECSSS---SCCCEECTT-----CSCTTC--CCCBCCTTCCCEEEC---CSCEEEEEECT--TTGGG
T ss_pred CCEEEECCCCEEEEEECCC---CceEEEccC-----cCCCCc--cceecCCCCEEEEEe---CCCeEEEEEeC--CCCcC
Confidence 3799999999987766653 333332211 011222 124567999988888 47999999998 45678
Q ss_pred cceeEEEEecCC
Q 009127 138 GAFGGIRIWSRP 149 (543)
Q Consensus 138 Gl~G~liV~~~~ 149 (543)
||.|.|+|.++.
T Consensus 87 GM~G~I~V~~~~ 98 (127)
T 3tu6_A 87 GMIGAIVVGEPA 98 (127)
T ss_dssp TCEEEEEESSCT
T ss_pred CcEEEEEECcCC
Confidence 999999999854
No 94
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.61 E-value=1e-07 Score=76.76 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=58.0
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|+++.|+ |.+...|.+|+|+. . +...++..+.+|+...+.| +.||.|
T Consensus 20 ~i~v~~Gd~V~~~--n~~~~~H~v~~~~~---------~--------------~~~~~~~~~~~g~~~~~~f--~~~G~y 72 (91)
T 1bxv_A 20 TIEIQAGDTVQWV--NNKLAPHNVVVEGQ---------P--------------ELSHKDLAFSPGETFEATF--SEPGTY 72 (91)
T ss_dssp EEEECTTCEEEEE--ECSSCCEEEEETTC---------G--------------GGCEEEEECSTTCEEEEEC--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCCcEEEEeCC---------C--------------ccCcccceeCCCCEEEEEe--CCCEEE
Confidence 4678999999876 76668899999872 0 0124778899999877765 899999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|||| .|...||.+.+.|.
T Consensus 73 ~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 73 TYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEECT--TTGGGTCEEEEEEC
T ss_pred EEEeC--CCccCCCEEEEEEC
Confidence 99999 69999999999883
No 95
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.56 E-value=1.2e-07 Score=80.77 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA 137 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (543)
...|+|++||+|++. |.. .++++..+... .-+|. ....+.||++++|.| +++|+|||||- .|...
T Consensus 21 P~~i~V~~GDTV~f~--n~~-~~Hnv~~~~~~-----~p~g~--~~~~~~pg~t~s~TF---~~~G~y~Y~C~--~H~~~ 85 (124)
T 3ef4_A 21 PGFVKVEAGDTVKFV--PTD-KSHNAESVREV-----WPEGV--APVKGGFSKEVVFNA---EKEGLYVLKCA--PHYGM 85 (124)
T ss_dssp SSEEEECTTCEEEEE--CSS-SSCCCEECTTT-----SCTTS--CCCBCCTTCCEEEEC---CSSEEEEEECT--TTGGG
T ss_pred CCEEEECCCCEEEEE--ECC-CCccEEEeCCc-----CCCCc--cccccCCCCEEEEEe---CCCeEEEEEcC--CCCcC
Confidence 379999999997655 443 45555444211 11222 124567999999888 46999999995 66778
Q ss_pred cceeEEEEecC
Q 009127 138 GAFGGIRIWSR 148 (543)
Q Consensus 138 Gl~G~liV~~~ 148 (543)
||.|.|+|.++
T Consensus 86 GM~G~I~V~~p 96 (124)
T 3ef4_A 86 GMVVLVQVGKP 96 (124)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEECCC
Confidence 99999999874
No 96
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.55 E-value=1.9e-07 Score=76.58 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=56.3
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC-------CCCCcCCCCCeEEEEEEeCCCcccceecCC
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY-------GTTCPIPPGKNFTYVLQAKDQIGSYFYFPS 130 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p-------~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H 130 (543)
.+.|++++||+|++ +|.....+++++++...+ +|.- .....+.||+++++.|+ ++|+|+|||+
T Consensus 16 P~~i~v~~G~tV~~--~n~~~~~H~v~~~~~~~p-----~~~~~~~~~~~~~~~~~~~G~~~~~tf~---~~G~y~~~C~ 85 (99)
T 1plc_A 16 PSEFSISPGEKIVF--KNNAGFPHNIVFDEDSIP-----SGVDASKISMSEEDLLNAKGETFEVALS---NKGEYSFYCS 85 (99)
T ss_dssp SSEEEECTTCEEEE--EECSSCCBCCEECTTSSC-----TTCCHHHHCCCTTCCBCSTTCEEEEECC---SCEEEEEECG
T ss_pred CCEEEECCCCEEEE--EECCCCceEEEEeCCCCc-----ccccccccccccCccccCCCCEEEEEEC---CCceEEEEcC
Confidence 36999999998755 788666777777653211 2211 01235789999998873 6999999999
Q ss_pred chhhhhccceeEEEEe
Q 009127 131 FLFHKAAGAFGGIRIW 146 (543)
Q Consensus 131 ~~~q~~~Gl~G~liV~ 146 (543)
.|...||.|.|+|+
T Consensus 86 --~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 86 --PHQGAGMVGKVTVN 99 (99)
T ss_dssp --GGTTTTCEEEEEEC
T ss_pred --CCcccCCEEEEEEC
Confidence 56777999999984
No 97
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.54 E-value=2.7e-07 Score=75.65 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=57.2
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC-------CCCCcCCCCCeEEEEEEeCCCcccceecCC
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY-------GTTCPIPPGKNFTYVLQAKDQIGSYFYFPS 130 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p-------~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H 130 (543)
.+.|++++||+|+ ++|.....+++++++... .+|.. .....+.||+++++.|. ++|+|+|||+
T Consensus 16 P~~i~v~~G~tV~--~~n~~~~~H~~~~~~~~~-----p~g~~~~~~~~~~~~~~~~~G~~~~~~f~---~~G~y~~~C~ 85 (99)
T 1byp_A 16 PSDLSIASGEKIT--FKNNAGFPHNDLFDKKEV-----PAGVDVTKISMPEEDLLNAPGEEYSVTLT---EKGTYKFYCA 85 (99)
T ss_dssp SSEEEECTTEEEE--EEECSSCCBCCEECTTSS-----CTTCCHHHHSCCTTCCBCSTTCEEEEEEC---SCEEEEEECG
T ss_pred CCEEEECCCCEEE--EEECCCCcceEEEeCCCC-----ccccccccccccccceeeCCCCEEEEEeC---CCcEEEEEcC
Confidence 3689999999865 578876778888876422 12221 01235789999999884 6999999999
Q ss_pred chhhhhccceeEEEEe
Q 009127 131 FLFHKAAGAFGGIRIW 146 (543)
Q Consensus 131 ~~~q~~~Gl~G~liV~ 146 (543)
.+...||.|.|+|+
T Consensus 86 --~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 86 --PHAGAGMVGKVTVN 99 (99)
T ss_dssp --GGTTTTCEEEEEEC
T ss_pred --CccccCCEEEEEEC
Confidence 56677999999984
No 98
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.48 E-value=1.5e-07 Score=76.81 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=58.6
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|.|+ |.+...|.+++++..+. .+ .. ...+++..+.+|+...+.| +.||.|
T Consensus 20 ~i~v~~G~~V~~~--n~~~~~H~~~~~~~~~~-----~~------~~------~~~~~~~~~~~g~~~~~tf--~~~G~y 78 (97)
T 1b3i_A 20 ALSISAGDTVEFV--MNKVGPHNVIFDKVPAG-----ES------AP------ALSNTKLAIAPGSFYSVTL--GTPGTY 78 (97)
T ss_dssp EEEECTTCEEEEE--ECSSCCCCBEEEECCTT-----SC------HH------HHCBCCCCCSCSCCEEEEC--CSCSEE
T ss_pred EEEECCCCEEEEE--ECCCCCeEEEEeCCCCc-----cc------cc------cccccceecCCCCEEEEEe--CCCeEE
Confidence 4678899998876 77667899999875441 00 00 0114677788888887766 899999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|||+ .|.++||.+.+.|.
T Consensus 79 ~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 79 SFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp EEECS--STTTTTCEEEEEEC
T ss_pred EEEcc--ChhhcCCEEEEEEC
Confidence 99999 69999999999883
No 99
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=98.45 E-value=4.5e-07 Score=76.19 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=58.4
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|+.++|++.|.+...|-|++... .-+..+.||+...+.|.++.||.|
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~~---------------------------~~~~~i~pG~~~~~~f~~~~~G~y 91 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDAF---------------------------GVQEVIKAGETKTISFTADKAGAF 91 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGGG---------------------------TEEEEECTTCEEEEEEECCSCEEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcCC---------------------------CceeEeCCCCEEEEEEECCCCEEE
Confidence 46788999999999999766555444321 125678899999999999999999
Q ss_pred eeeecchhhhhcccEEEEEEec
Q 009127 493 NIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~ 514 (543)
.||||+.-|... |.+.+.|.+
T Consensus 92 ~~~C~~~~~~~~-M~g~i~V~~ 112 (112)
T 1iby_A 92 TIWCQLHPKNIH-LPGTLNVVE 112 (112)
T ss_dssp EEBCSSSCTTTB-CCEEEEEEC
T ss_pred EEECCCCCchHH-CEEEEEEeC
Confidence 999999776554 999998863
No 100
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.39 E-value=7.9e-07 Score=72.82 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=59.6
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|.| .|.+...|.+|+++..|. .+ ++. .. ....+|++.+.+|+...+.| +.||.|
T Consensus 18 ~i~v~~G~tV~~--~n~~~~~H~~~~~~~~~p-----~g-~~~-----~~--~~~~~~~~~~~~G~~~~~~f--~~~G~y 80 (99)
T 1byp_A 18 DLSIASGEKITF--KNNAGFPHNDLFDKKEVP-----AG-VDV-----TK--ISMPEEDLLNAPGEEYSVTL--TEKGTY 80 (99)
T ss_dssp EEEECTTEEEEE--EECSSCCBCCEECTTSSC-----TT-CCH-----HH--HSCCTTCCBCSTTCEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEE--EECCCCcceEEEeCCCCc-----cc-ccc-----cc--ccccccceeeCCCCEEEEEe--CCCcEE
Confidence 477899999887 677778999999975431 00 000 00 00125667888999888766 699999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|||+ .|.++||.+.+.|.
T Consensus 81 ~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 81 KFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEECG--GGTTTTCEEEEEEC
T ss_pred EEEcC--CccccCCEEEEEEC
Confidence 99999 59999999999883
No 101
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.38 E-value=9.1e-07 Score=72.65 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=59.1
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|++|+|++.|.+...|.|.+.+.. -...+.+|....+.|.++.||.|
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~---------------------------~~~~~~pg~~~~~~~t~~~~G~Y 81 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTIKKLG---------------------------IDVVVESGKEKNITVKPKSAGTY 81 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEEGGGT---------------------------EEEEECTTCEEEEEECCCSCEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEEecCC---------------------------cceeecCCcceeEEEecccCceE
Confidence 367899999999999998777877664422 12346778889999999999999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|+|.. |...||.+.+.|+
T Consensus 82 ~y~C~~--H~~~gM~G~i~Ve 100 (100)
T 4hci_A 82 ELICRY--HLLKGMEGKVIVK 100 (100)
T ss_dssp EEECTT--TGGGTCEEEEEEC
T ss_pred EEECcc--ccCCCCEEEEEEC
Confidence 999985 9999999999874
No 102
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.37 E-value=8.9e-07 Score=75.51 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=50.7
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA 137 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (543)
.+.|+|++||+|++ .|.-. .+++..+- ...-||.. .....||++++|.| +++|+|||+|. .|...
T Consensus 20 P~~i~V~~GdtV~f--~~~~~-~H~v~~~~-----~~~p~~~~--~~~~~pG~t~~~tF---~~~G~y~y~C~--~H~~~ 84 (123)
T 1paz_A 20 PAYIKANPGDTVTF--IPVDK-GHNVESIK-----DMIPEGAE--KFKSKINENYVLTV---TQPGAYLVKCT--PHYAM 84 (123)
T ss_dssp SSEEEECTTCEEEE--EESSS-SCCCEECT-----TCSCTTCC--CCBCCTTCCEEEEC---CSCEEEEEECT--TTGGG
T ss_pred CCEEEECCCCEEEE--EECCC-CeEEEEec-----ccCCCCcc--ceecCCCCEEEEEe---CCCEEEEEEeC--CcccC
Confidence 47999999999765 44432 33333221 11112221 13456999988887 46999999997 46667
Q ss_pred cceeEEEEecC
Q 009127 138 GAFGGIRIWSR 148 (543)
Q Consensus 138 Gl~G~liV~~~ 148 (543)
||.|.|+|.++
T Consensus 85 gM~G~I~V~~~ 95 (123)
T 1paz_A 85 GMIALIAVGDS 95 (123)
T ss_dssp TCEEEEEESSS
T ss_pred CCEEEEEEcCC
Confidence 99999999874
No 103
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.37 E-value=9.8e-07 Score=75.79 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=61.0
Q ss_pred cCCCceEEEecC-CEEEEEEEECCCCC-----c--eeecCcccC-------------CCCCCCCCCCC-CCCcCCCCCeE
Q 009127 55 QFPGPQIDAVTN-DNLIISVYNYLREP-----F--LISWNGLQQ-------------RRNSWQDGVYG-TTCPIPPGKNF 112 (543)
Q Consensus 55 ~~pgP~i~v~~G-d~v~i~~~N~l~~~-----~--~iH~HG~~~-------------~~~~~~DG~p~-tq~~i~PG~~~ 112 (543)
+|--..|.|++| |+|+|+|+|.-..+ + .|--+|... .-.+..|.--. ....|.||++.
T Consensus 14 ~F~p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~ 93 (129)
T 1cuo_A 14 TYSTRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKT 93 (129)
T ss_dssp CCSCSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEE
T ss_pred eEccCeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEE
Confidence 443358999999 99999999985432 2 222222100 00001111111 12458999999
Q ss_pred EEEEEeC--CCcccceecCCchhhhhccceeEEEEec
Q 009127 113 TYVLQAK--DQIGSYFYFPSFLFHKAAGAFGGIRIWS 147 (543)
Q Consensus 113 ~y~f~~~--~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 147 (543)
++.|+++ .++|+|||.|-...|.. ||.|.|+|.+
T Consensus 94 svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~~ 129 (129)
T 1cuo_A 94 SVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLEE 129 (129)
T ss_dssp EEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEEC
T ss_pred EEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEeC
Confidence 9999984 36999999998777777 8999999964
No 104
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.35 E-value=5.2e-07 Score=73.82 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCC----C-CCCcCCCCCeEEEEEEeCCCcccceecCC
Q 009127 56 FPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVY----G-TTCPIPPGKNFTYVLQAKDQIGSYFYFPS 130 (543)
Q Consensus 56 ~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p----~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H 130 (543)
|-.+.|++++||+|++ .|.....+++....-. .-+|.- . +...+.||+++++.| +++|+|+|+|.
T Consensus 15 F~P~~i~v~~GdtV~~--~n~~~~~H~v~~~~~~-----~p~g~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~ 84 (98)
T 1iuz_A 15 FVPSKISVAAGEAIEF--VNNAGFPHNIVFDEDA-----VPAGVDADAISYDDYLNSKGETVVRKL---STPGVYGVYCE 84 (98)
T ss_dssp EESSEEEECTTCEEEE--EECSSCCEEEEECTTS-----SCTTCCHHHHCEEEEECSTTCEEEEEC---CSCEEEEEECT
T ss_pred EeCCEEEECCCCEEEE--EECCCCCEEEEEeCCC-----CccccccccccccccccCCCCEEEEEc---CCCEEEEEEch
Confidence 3347999999999665 5776566666655421 112221 0 113589999999888 47999999997
Q ss_pred chhhhhccceeEEEEe
Q 009127 131 FLFHKAAGAFGGIRIW 146 (543)
Q Consensus 131 ~~~q~~~Gl~G~liV~ 146 (543)
. |...||.|.|+|+
T Consensus 85 ~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 85 P--HAGAGMKMTITVQ 98 (98)
T ss_dssp T--TGGGTCEEEEEEC
T ss_pred h--hccCCCEEEEEEC
Confidence 5 5566999999985
No 105
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.32 E-value=1e-06 Score=75.18 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=50.9
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA 137 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (543)
.+.|+|++||+|++ .|.-. .+++..+. ...-||.. ...+.||++++|.| +++|+|+|+|. .|...
T Consensus 20 P~~i~V~~GdtV~f--~n~~~-~H~v~~~~-----~~~p~~~~--~~~~~pG~t~~~tF---~~~G~y~y~C~--~H~~~ 84 (123)
T 1pmy_A 20 PALVRLKPGDSIKF--LPTDK-GHNVETIK-----GMAPDGAD--YVKTTVGQEAVVKF---DKEGVYGFKCA--PHYMM 84 (123)
T ss_dssp SSEEEECTTCEEEE--ECSSS-SCCCEECT-----TSSCTTCC--CCBCCTTSCEEEEC---CSCEEEEEECS--TTTTT
T ss_pred CCEEEECCCCEEEE--EECCC-CcEEEEec-----ccCCCCcc--ceecCCCCEEEEEe---CCCeEEEEEeC--Ccccc
Confidence 37999999999665 55432 33333221 11112221 24467999988888 46999999997 46667
Q ss_pred cceeEEEEecC
Q 009127 138 GAFGGIRIWSR 148 (543)
Q Consensus 138 Gl~G~liV~~~ 148 (543)
||.|.|+|.++
T Consensus 85 gM~G~I~V~~~ 95 (123)
T 1pmy_A 85 GMVALVVVGDK 95 (123)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEEcCC
Confidence 99999999874
No 106
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.29 E-value=1e-06 Score=72.59 Aligned_cols=85 Identities=11% Similarity=-0.023 Sum_probs=58.6
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCc-ceeEEeCCCCEEEEEEEecCcc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVA-RSTTQVYPRSWTAIYMALDNVG 490 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~-rDTv~vp~~g~v~irf~adnpG 490 (543)
..++++.|++|+|+ |.+...|.++++.-... .+.+.... ..+.+ .+++.+.+|+...+.| +.||
T Consensus 17 ~~i~v~~G~tV~~~--n~~~~~H~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~pG~~~~~tf--~~~G 81 (102)
T 1kdj_A 17 DSITVSAGEAVEFT--LVGETGHNIVFDIPAGA-----PGTVASEL------KAASMDENDLLSEDEPSFKAKV--STPG 81 (102)
T ss_dssp SEEEECTTCCEEEE--ECSSSCBCCEECCCTTC-----CHHHHHHH------HHTSCCTTCCBBTTBCEEEECC--CSCE
T ss_pred CEEEECCCCEEEEE--ECCCCCeEEEEeCcccc-----cccccchh------hcccccccceecCCCCEEEEEe--CCCe
Confidence 35788999999876 77777899998731100 00000000 00122 4677788898888766 8999
Q ss_pred cceeeecchhhhhcccEEEEEEe
Q 009127 491 MWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 491 ~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|.|||+ .|..+||.+.+.|.
T Consensus 82 ~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 82 TYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEEeC--CCcccCCeEEEEEC
Confidence 9999999 69999999999883
No 107
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.25 E-value=2.8e-06 Score=75.96 Aligned_cols=92 Identities=18% Similarity=0.101 Sum_probs=60.9
Q ss_pred cCCCceEEE-ecCCEEEEEEEECCCCC-----ce--eecCccc---------C---CCCCCCCCCCC-CCCcCCCCCeEE
Q 009127 55 QFPGPQIDA-VTNDNLIISVYNYLREP-----FL--ISWNGLQ---------Q---RRNSWQDGVYG-TTCPIPPGKNFT 113 (543)
Q Consensus 55 ~~pgP~i~v-~~Gd~v~i~~~N~l~~~-----~~--iH~HG~~---------~---~~~~~~DG~p~-tq~~i~PG~~~~ 113 (543)
+|--..|.| ++||+|+|+|+|.-..+ +. |--+|.. . .-.+..|.-.. ....|.||++++
T Consensus 54 ~F~P~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~s 133 (167)
T 3ay2_A 54 QFNTKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESS 133 (167)
T ss_dssp CBSCSEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEE
T ss_pred eEecceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEE
Confidence 554458999 99999999999986542 22 2212210 0 00000111111 124589999999
Q ss_pred EEEEeC-CCcccceecCCchhhhhccceeEEEEec
Q 009127 114 YVLQAK-DQIGSYFYFPSFLFHKAAGAFGGIRIWS 147 (543)
Q Consensus 114 y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 147 (543)
+.|+++ -++|+|||+|-...|.. ||.|.|+|.+
T Consensus 134 vtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~~ 167 (167)
T 3ay2_A 134 LTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLVD 167 (167)
T ss_dssp EEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEEC
T ss_pred EEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEeC
Confidence 999984 16999999998777777 8999999974
No 108
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.20 E-value=7.5e-06 Score=67.87 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC-CCCcCCCCCeEEEEEEeCCCcccceecCCc
Q 009127 53 NGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG-TTCPIPPGKNFTYVLQAKDQIGSYFYFPSF 131 (543)
Q Consensus 53 Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~-tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~ 131 (543)
+..|-...|+|++||+|++. |.....+++...... .|... ....+.||+++++.| +++|+|+|+|-.
T Consensus 28 ~~~F~P~~i~V~~G~tV~~~--N~d~~~H~v~~~~~~-------~~~~~~~s~~l~~g~~~~~tf---~~~G~y~~~C~~ 95 (106)
T 1id2_A 28 KMKYLTPEVTIKAGETVYWV--NGEVMPHNVAFKKGI-------VGEDAFRGEMMTKDQAYAITF---NEAGSYDYFCTP 95 (106)
T ss_dssp TTEESSSEEEECTTCEEEEE--ECSSSCBCCEECTTT-------SSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred ecEEeCCEEEECCCCEEEEE--ECCCCcEEEEEeCCC-------CCcccccccccCCCCEEEEEe---CCCEEEEEEeCC
Confidence 33444479999999998654 776555555443321 12111 223578999999888 479999999976
Q ss_pred hhhhhccceeEEEEe
Q 009127 132 LFHKAAGAFGGIRIW 146 (543)
Q Consensus 132 ~~q~~~Gl~G~liV~ 146 (543)
+. ||.|.|+|+
T Consensus 96 H~----~M~G~I~V~ 106 (106)
T 1id2_A 96 HP----FMRGKVIVE 106 (106)
T ss_dssp CT----TCEEEEEEC
T ss_pred CC----CCEEEEEEC
Confidence 32 999999985
No 109
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=98.09 E-value=6.7e-06 Score=70.53 Aligned_cols=92 Identities=18% Similarity=0.127 Sum_probs=59.1
Q ss_pred cCCCceEEE-ecCCEEEEEEEECCCCC-----ce--eecCcccC-------------CCCCCCCCCCC-CCCcCCCCCeE
Q 009127 55 QFPGPQIDA-VTNDNLIISVYNYLREP-----FL--ISWNGLQQ-------------RRNSWQDGVYG-TTCPIPPGKNF 112 (543)
Q Consensus 55 ~~pgP~i~v-~~Gd~v~i~~~N~l~~~-----~~--iH~HG~~~-------------~~~~~~DG~p~-tq~~i~PG~~~ 112 (543)
+|--..|.| ++||+|+|+|+|.-..+ +. |--+|... .-.+..|.--. ....|.||++.
T Consensus 14 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~ 93 (129)
T 2ccw_A 14 QYNVKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESD 93 (129)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred cEecceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEE
Confidence 443358999 99999999999986432 22 22222000 00001111111 12358999999
Q ss_pred EEEEEeCC-Ccc-cceecCCchhhhhccceeEEEEec
Q 009127 113 TYVLQAKD-QIG-SYFYFPSFLFHKAAGAFGGIRIWS 147 (543)
Q Consensus 113 ~y~f~~~~-~~G-t~wYH~H~~~q~~~Gl~G~liV~~ 147 (543)
++.|+++. ++| +|||.|....|.. ||.|.|+|.+
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~~ 129 (129)
T 2ccw_A 94 SVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLGS 129 (129)
T ss_dssp EEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEECC
T ss_pred EEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEeC
Confidence 99999840 355 4999998777777 8999999963
No 110
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.08 E-value=1.2e-05 Score=84.28 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=64.6
Q ss_pred EEEEEECCcCCCceEEEecCCEEEEEEEECC---CCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcc
Q 009127 47 QQGILINGQFPGPQIDAVTNDNLIISVYNYL---REPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIG 123 (543)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l---~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~G 123 (543)
..|...+-.|-.+.|+|++||+|++.++|.. +..+++...++ |+ ...+.||++.++.|++ +++|
T Consensus 546 V~Mta~~~~FsP~eI~VP~GdtVrfiLTN~D~veDViHSF~IPsl---------GI---K~DaiPGrtnsvtFta-dkPG 612 (638)
T 3sbq_A 546 VYMTSMAPAFGVQEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNH---------GV---SMEISPQQTSSITFVA-DKPG 612 (638)
T ss_dssp EEEEEETTEESCCEEEEETTCEEEEEEEECCCSTTCCEEEEETTT---------TE---EEEECTTCEEEEEEEC-CSCE
T ss_pred EEEEEEcccccCCEEEEecCceeEEEEecCCcCCCceeeeEecCC---------Cc---eeeeCCCCeEEEEEEc-CCCE
Confidence 3555566677668999999999999999963 23333322222 11 2457899999999999 5899
Q ss_pred cceecCCch-hhhhccceeEEEEecC
Q 009127 124 SYFYFPSFL-FHKAAGAFGGIRIWSR 148 (543)
Q Consensus 124 t~wYH~H~~-~q~~~Gl~G~liV~~~ 148 (543)
+|||+|..- .....+|.|.|+|+++
T Consensus 613 vY~y~CSE~CGa~Hs~M~G~ViVEPa 638 (638)
T 3sbq_A 613 LHWYYCSWFCHALHMEMVGRMMVEPA 638 (638)
T ss_dssp EEEEECCSCCSTTCTTCEEEEEEECC
T ss_pred EEEEECCCcCCCCcccceEEEEEecC
Confidence 999999842 2223479999999873
No 111
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.08 E-value=4.1e-06 Score=68.45 Aligned_cols=83 Identities=13% Similarity=0.015 Sum_probs=58.6
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
..++++.|++|.| .|.+...|.++++...+- .+ .+ ... ....++.+.+.+|+...+.| +.||.
T Consensus 17 ~~i~v~~G~tV~~--~n~~~~~H~v~~~~~~~p-----~~-~~-----~~~--~~~~~~~~~~~~G~~~~~tf--~~~G~ 79 (99)
T 1plc_A 17 SEFSISPGEKIVF--KNNAGFPHNIVFDEDSIP-----SG-VD-----ASK--ISMSEEDLLNAKGETFEVAL--SNKGE 79 (99)
T ss_dssp SEEEECTTCEEEE--EECSSCCBCCEECTTSSC-----TT-CC-----HHH--HCCCTTCCBCSTTCEEEEEC--CSCEE
T ss_pred CEEEECCCCEEEE--EECCCCceEEEEeCCCCc-----cc-cc-----ccc--cccccCccccCCCCEEEEEE--CCCce
Confidence 3578899999887 677777899999864320 00 00 000 00123556788898877765 69999
Q ss_pred ceeeecchhhhhcccEEEEEEe
Q 009127 492 WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 492 w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.|||+ .|..+||.+.+.|.
T Consensus 80 y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 80 YSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEcC--CCcccCCEEEEEEC
Confidence 999999 59999999999883
No 112
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=98.05 E-value=2e-05 Score=67.41 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=58.8
Q ss_pred cCCCceEEE-ecCCEEEEEEEECCCCC-----ceeec--Cc---------ccC----CCCCCCCCCCC-CCCcCCCCCeE
Q 009127 55 QFPGPQIDA-VTNDNLIISVYNYLREP-----FLISW--NG---------LQQ----RRNSWQDGVYG-TTCPIPPGKNF 112 (543)
Q Consensus 55 ~~pgP~i~v-~~Gd~v~i~~~N~l~~~-----~~iH~--HG---------~~~----~~~~~~DG~p~-tq~~i~PG~~~ 112 (543)
+|--..|.| ++||+|+|+|+|.-..+ +++-+ .| +.. .-.+..|.--. ....|.||+++
T Consensus 14 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~ 93 (128)
T 1nwp_A 14 SFNTKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKD 93 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred cEecCEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEE
Confidence 454458999 99999999999985432 33221 21 100 00000111001 12358999999
Q ss_pred EEEEEeCC-Cccc-ceecCCchhhhhccceeEEEEe
Q 009127 113 TYVLQAKD-QIGS-YFYFPSFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 113 ~y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~liV~ 146 (543)
++.|+++. ++|+ |||.|....|.. ||.|.|+|.
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 94 SVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp EEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 99999841 3676 999998777777 899999984
No 113
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=98.02 E-value=1.2e-05 Score=68.86 Aligned_cols=92 Identities=21% Similarity=0.162 Sum_probs=59.8
Q ss_pred cCCCceEEE-ecCCEEEEEEEECCCCC-----ceeec--Cc---------cc----CCCCCCCCCCCC-CCCcCCCCCeE
Q 009127 55 QFPGPQIDA-VTNDNLIISVYNYLREP-----FLISW--NG---------LQ----QRRNSWQDGVYG-TTCPIPPGKNF 112 (543)
Q Consensus 55 ~~pgP~i~v-~~Gd~v~i~~~N~l~~~-----~~iH~--HG---------~~----~~~~~~~DG~p~-tq~~i~PG~~~ 112 (543)
+|--..|.| ++|++|+|+++|.-..+ +++-+ .+ +. ..-.+..|.--. ....|.||+++
T Consensus 13 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~ 92 (128)
T 2iaa_C 13 QFNTKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETD 92 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred eEecCEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEE
Confidence 454468999 99999999999986442 32211 11 00 000001111111 12357999999
Q ss_pred EEEEEeCC-Cccc-ceecCCchhhhhccceeEEEEec
Q 009127 113 TYVLQAKD-QIGS-YFYFPSFLFHKAAGAFGGIRIWS 147 (543)
Q Consensus 113 ~y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~liV~~ 147 (543)
++.|+++. ++|+ |+|.|....|.. ||.|.|+|.+
T Consensus 93 ~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~~ 128 (128)
T 2iaa_C 93 SVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELGS 128 (128)
T ss_dssp EEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEECC
T ss_pred EEEEeccccCCCceEEEEECCCChhH-CCEEEEEEeC
Confidence 99999841 4885 999998777777 8999999963
No 114
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.01 E-value=9.3e-06 Score=69.06 Aligned_cols=74 Identities=9% Similarity=-0.011 Sum_probs=49.1
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCchhhhhc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSFLFHKAA 137 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (543)
.+.|+|++||+|++ .|... .++++...- ..-+|. ....+.||++++|.| +++|+|||+|..+.
T Consensus 20 P~~i~V~~GdtV~f--~n~d~-~H~v~~~~~-----~~p~~~--~~~~~~~g~t~~~tF---~~~G~y~y~C~~H~---- 82 (122)
T 2ux6_A 20 PASLKVAPGDTVTF--IPTDK-GHNVETIKG-----MIPDGA--EAFKSKINENYKVTF---TAPGVYGVKCTPHP---- 82 (122)
T ss_dssp SSEEEECTTEEEEE--EESSS-SCCCEECTT-----CSCTTC--CCCBCCTTCCEEEEE---CSCEEEEEEETTEE----
T ss_pred CCEEEECCCCEEEE--EECCC-CcEEEEccc-----ccCCCc--ceeecCCCCEEEEEe---CCCEEEEEEeCCCc----
Confidence 37999999998665 45533 333333220 011222 124567999999888 47999999997532
Q ss_pred cceeEEEEecC
Q 009127 138 GAFGGIRIWSR 148 (543)
Q Consensus 138 Gl~G~liV~~~ 148 (543)
.|.|.|+|.+.
T Consensus 83 ~M~G~I~V~~~ 93 (122)
T 2ux6_A 83 FMVGVVQVGDA 93 (122)
T ss_dssp EEEEEEEESSS
T ss_pred cCEEEEEEeCC
Confidence 29999999874
No 115
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.94 E-value=1.8e-05 Score=65.47 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=50.8
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|++|+|+ |.+...|.+|+|... .|. ..+ ++-.+.+|+...+.| +.||.|
T Consensus 34 ~i~v~~Gd~V~~~--N~d~~~H~v~~~~~~-------~g~-------------~~~-~~~~~~pG~~~~~tf--~~~G~y 88 (105)
T 2ov0_A 34 ELHVKVGDTVTWI--NREAMPHNVHFVAGV-------LGE-------------AAL-KGPMMKKEQAYSLTF--TEAGTY 88 (105)
T ss_dssp EEEECTTCEEEEE--ECSSSCBCCEECTTT-------SSS-------------SCE-ECCCBCTTEEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCCEEEEEcCCC-------CCc-------------ccc-cccccCCCCEEEEEe--CCCEEE
Confidence 4678899998885 877788999988521 110 001 222366787766555 899999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|||++ |. ||.+.+.|.
T Consensus 89 ~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 89 DYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEECSS--CT--TCEEEEEEC
T ss_pred EEEeCC--CC--CCEEEEEEC
Confidence 999998 65 999998873
No 116
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=97.92 E-value=1.9e-05 Score=70.04 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=60.0
Q ss_pred eEEecCCCcEEEEEEEeCC-CCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCccee-------EEeCCCC--EEE
Q 009127 412 SVMAANFREFVEIVFQNWE-DTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARST-------TQVYPRS--WTA 481 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDT-------v~vp~~g--~v~ 481 (543)
+.++++.|++|.+++.|.+ ...|-|-++.. +. .+... |...+. ..|.||+ ...
T Consensus 61 p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~-------~~-~~~~~---------~~~~~~~~~~~~~~~i~PG~sgt~t 123 (154)
T 2cal_A 61 PTLEIPAGATVDVTFINTNKGFGHSFDITKK-------GP-PYAVM---------PVIDPIVAGTGFSPVPKDGKFGYTD 123 (154)
T ss_dssp CEEEECTTCEEEEEEEECCTTCCCCCEEESC-------CS-CCCSS---------CCCCSEEEEBCCCCCCBTTBEEEEE
T ss_pred CEEEEeCCCEEEEEEEcCCCCeeeEEEEeec-------Cc-chhcc---------ccccccccccccccccCCCCceEEE
Confidence 3578999999999999974 45566555421 11 11100 001121 1567888 899
Q ss_pred EEEEecCcccceeeecchhhhhcccEEEEEEe
Q 009127 482 IYMALDNVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 482 irf~adnpG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
+.|++ .||.+.||||+--|...||-..+.|.
T Consensus 124 ~tft~-~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 124 FTWHP-TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp EEECC-CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred EEEEE-CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 99999 99999999999999999999999873
No 117
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.82 E-value=4.1e-05 Score=81.89 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=60.6
Q ss_pred eEEecCCCcEEEEEEEeCCC---CCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC
Q 009127 412 SVMAANFREFVEIVFQNWED---TVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN 488 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~---~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn 488 (543)
..+.++.|+.|+|++.|.+. ..|.|+++++.+. ..+.||....+.|+++.
T Consensus 513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~gv~---------------------------~~i~PG~t~t~~Fta~~ 565 (595)
T 1fwx_A 513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVA---------------------------MEIGPQMTSSVTFVAAN 565 (595)
T ss_dssp SEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEE---------------------------EEECTTCEEEEEEECCS
T ss_pred CEEEEECCCEEEEEEEeCCCCCCceeeEEecCCCcc---------------------------eeeCCCCeEEEEEECCC
Confidence 45778999999999999743 3788888764321 35778899999999999
Q ss_pred cccceeeecc---hhhhhcccEEEEEEecCC
Q 009127 489 VGMWNIRSEN---WARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 489 pG~w~~HCHi---l~Hed~GMm~~~~V~~p~ 516 (543)
||.|.||||. ..|. ||.+.+.|.+++
T Consensus 566 pGtY~yhC~e~Cg~~H~--gM~G~IiV~p~~ 594 (595)
T 1fwx_A 566 PGVYWYYCQWFCHALHM--EMRGRMLVEPKE 594 (595)
T ss_dssp CEEEEEECCSCCSTTCT--TCEEEEEEECC-
T ss_pred CEEEEEECCCCCCCCcc--CCEEEEEEEcCC
Confidence 9999999993 4564 999999997653
No 118
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=97.48 E-value=0.00059 Score=57.48 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=55.7
Q ss_pred cCCCceEEEec-CCEEEEEEEECCCCC-----c--eee---------cCcccC----CCCCCCCCCCC-CCCcCCCCCeE
Q 009127 55 QFPGPQIDAVT-NDNLIISVYNYLREP-----F--LIS---------WNGLQQ----RRNSWQDGVYG-TTCPIPPGKNF 112 (543)
Q Consensus 55 ~~pgP~i~v~~-Gd~v~i~~~N~l~~~-----~--~iH---------~HG~~~----~~~~~~DG~p~-tq~~i~PG~~~ 112 (543)
+|--..|.|++ |++|+|+|+|.-..+ + .|- --|+.. .-.+..|.... ....|.||+++
T Consensus 14 ~F~p~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~ 93 (125)
T 3fsa_A 14 QFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKD 93 (125)
T ss_dssp CBSCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEE
T ss_pred EEecCEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEE
Confidence 45457999986 999999999996432 2 211 112210 00111122111 22348999999
Q ss_pred EEEEEeC--CCcccceecCCchhhhhccceeEEEEe
Q 009127 113 TYVLQAK--DQIGSYFYFPSFLFHKAAGAFGGIRIW 146 (543)
Q Consensus 113 ~y~f~~~--~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (543)
+..|+.+ .++|+|.|.|. .|. ||.|.++|.
T Consensus 94 ~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 94 SVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp EEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred EEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 9999986 26999999999 555 899999984
No 119
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.29 E-value=0.00039 Score=58.94 Aligned_cols=75 Identities=9% Similarity=0.120 Sum_probs=51.3
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|+|+..+ ..|-+..+.. .+. .+. +.+.+.+|....+.| +.||.|
T Consensus 23 ~i~V~~GDTV~f~n~~---~~Hnv~~~~~----------~~p-~g~-----------~~~~~~pg~t~s~TF--~~~G~y 75 (124)
T 3ef4_A 23 FVKVEAGDTVKFVPTD---KSHNAESVRE----------VWP-EGV-----------APVKGGFSKEVVFNA--EKEGLY 75 (124)
T ss_dssp EEEECTTCEEEEECSS---SSCCCEECTT----------TSC-TTS-----------CCCBCCTTCCEEEEC--CSSEEE
T ss_pred EEEECCCCEEEEEECC---CCccEEEeCC----------cCC-CCc-----------cccccCCCCEEEEEe--CCCeEE
Confidence 4678999999988554 5666665421 111 110 112234677655555 899999
Q ss_pred eeeecchhhhhcccEEEEEEecCC
Q 009127 493 NIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
.|||- .|..+||.+.+.|.+|.
T Consensus 76 ~Y~C~--~H~~~GM~G~I~V~~p~ 97 (124)
T 3ef4_A 76 VLKCA--PHYGMGMVVLVQVGKPV 97 (124)
T ss_dssp EEECT--TTGGGTCEEEEEESSCT
T ss_pred EEEcC--CCCcCCCEEEEEECCCC
Confidence 99997 59999999999998764
No 120
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=97.25 E-value=0.0011 Score=53.79 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=55.4
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
..++++.|++|.|+ |.+...|-+.+... .+ +.. ++. ...-.+...+.+|+...+.| +.||.
T Consensus 18 ~~i~v~~GdtV~~~--n~~~~~H~v~~~~~----------~~-p~g---~~~-~~~~~~~~~~~~g~~~~~tf--~~~G~ 78 (98)
T 1iuz_A 18 SKISVAAGEAIEFV--NNAGFPHNIVFDED----------AV-PAG---VDA-DAISYDDYLNSKGETVVRKL--STPGV 78 (98)
T ss_dssp SEEEECTTCEEEEE--ECSSCCEEEEECTT----------SS-CTT---CCH-HHHCEEEEECSTTCEEEEEC--CSCEE
T ss_pred CEEEECCCCEEEEE--ECCCCCEEEEEeCC----------CC-ccc---ccc-ccccccccccCCCCEEEEEc--CCCEE
Confidence 35788999998886 66666777665531 11 000 000 00113457788898877766 89999
Q ss_pred ceeeecchhhhhcccEEEEEEe
Q 009127 492 WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 492 w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.|+|-+ |..+||-+.+.|.
T Consensus 79 y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 79 YGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EEEECTT--TGGGTCEEEEEEC
T ss_pred EEEEchh--hccCCCEEEEEEC
Confidence 9999987 9999999999873
No 121
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.19 E-value=0.0008 Score=55.46 Aligned_cols=72 Identities=15% Similarity=-0.049 Sum_probs=49.7
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|++|.|+ |.+...|-+++.... .+ . .-.++-.+.+|+...+.| +.||.|
T Consensus 35 ~i~V~~G~tV~~~--N~d~~~H~v~~~~~~-------~~----~----------~~~~s~~l~~g~~~~~tf--~~~G~y 89 (106)
T 1id2_A 35 EVTIKAGETVYWV--NGEVMPHNVAFKKGI-------VG----E----------DAFRGEMMTKDQAYAITF--NEAGSY 89 (106)
T ss_dssp EEEECTTCEEEEE--ECSSSCBCCEECTTT-------SS----S----------SCEECCCBCTTEEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCcEEEEEeCCC-------CC----c----------ccccccccCCCCEEEEEe--CCCEEE
Confidence 4678899999887 777677777664321 00 0 001333456777777665 899999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|+|-+ |. ||.+.+.|.
T Consensus 90 ~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 90 DYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEECSS--CT--TCEEEEEEC
T ss_pred EEEeCC--CC--CCEEEEEEC
Confidence 999988 66 999998873
No 122
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=97.10 E-value=0.00054 Score=58.40 Aligned_cols=75 Identities=16% Similarity=0.054 Sum_probs=49.5
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|.|++.|. .|-+..+.. .+ ++.. +.+.+.+++...+. ++.||.|
T Consensus 24 ~i~V~~GDtVtf~n~~~---~H~v~~~~~----------~~-P~g~-----------~~f~s~pGet~s~T--F~~pG~y 76 (127)
T 3tu6_A 24 VIRAQPGDTVTFVAKDK---GHNSALMKG----------GA-PEGA-----------ETWKGKINEEITVT--LSKPGVY 76 (127)
T ss_dssp EEEECTTCEEEEECSSS---SCCCEECTT----------CS-CTTC-----------CCCBCCTTCCCEEE--CCSCEEE
T ss_pred EEEECCCCEEEEEECCC---CceEEEccC----------cC-CCCc-----------cceecCCCCEEEEE--eCCCeEE
Confidence 47789999999988763 455444321 01 1111 01112356655444 4899999
Q ss_pred eeeecchhhhhcccEEEEEEecCC
Q 009127 493 NIRSENWARQYLGQQFYLRVYSPA 516 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~p~ 516 (543)
.|||-. |..+||.+.+.|.++.
T Consensus 77 ~y~C~~--H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 77 MYQCAP--HVGMGMIGAIVVGEPA 98 (127)
T ss_dssp EEECTT--TGGGTCEEEEEESSCT
T ss_pred EEEeCC--CCcCCcEEEEEECcCC
Confidence 999994 9999999999998753
No 123
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.06 E-value=0.0012 Score=56.84 Aligned_cols=72 Identities=15% Similarity=-0.036 Sum_probs=50.5
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|++|+|+ |.+...|-+++.... .| . . -.|+-.+.+|+...+.| +.||.|
T Consensus 61 ~i~V~~GdtV~~~--N~d~~~H~v~~~~~~-------~g----~---------~-~~~s~~l~pG~t~~~tF--~~~G~y 115 (132)
T 3c75_A 61 EVTIKAGETVYWV--NGEVMPHNVAFKKGI-------VG----E---------D-AFRGEMMTKDQAYAITF--NEAGSY 115 (132)
T ss_dssp EEEECTTCEEEEE--ECSSSCBCCEECTTT-------SS----S---------S-CEECCCBCTTEEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCceEEEEeCCC-------CC----c---------c-cccccccCCCCEEEEEc--CCCEEE
Confidence 4678899999886 777777877764321 00 0 0 11333466788777666 899999
Q ss_pred eeeecchhhhhcccEEEEEEe
Q 009127 493 NIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|||-+ |. ||-+.+.|.
T Consensus 116 ~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 116 DYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEECSS--CT--TCEEEEEEC
T ss_pred EEEeCC--Cc--CCEEEEEEC
Confidence 999988 76 999999873
No 124
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=97.05 E-value=0.0012 Score=55.89 Aligned_cols=73 Identities=8% Similarity=0.061 Sum_probs=49.6
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|.|++.|. .|-+..+.. .+ ++.. +.+.+.+++...+.| +.||.|
T Consensus 22 ~i~V~~GdtV~f~~~~~---~H~v~~~~~----------~~-P~g~-----------~~f~~~pg~t~s~TF--~~pG~y 74 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDK---SHNVEAIKE----------IL-PEGV-----------ESFKSKINESYTLTV--TEPGLY 74 (123)
T ss_dssp EEEECTTEEEEEEESST---TCCCEECTT----------SS-CTTC-----------CCCBCCTTCCEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEEECCC---CceEEEcCC----------cC-CCCc-----------cceecCCCCEEEEEe--CCCeEE
Confidence 47789999999998873 355544321 11 1110 011134677665555 899999
Q ss_pred eeeecchhhhhcccEEEEEEec
Q 009127 493 NIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~ 514 (543)
.|+|- .|..+||.+.+.|.+
T Consensus 75 ~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 75 GVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp EEECG--GGTTTTCEEEEEESS
T ss_pred EEEeC--CCCcCCcEEEEEECC
Confidence 99999 499999999999986
No 125
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.02 E-value=0.0036 Score=53.86 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=52.7
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCc--h-hhh
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSF--L-FHK 135 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~--~-~q~ 135 (543)
..|.++.|++|++.++|. +.. |+..... .|. ...+.||+.-++.|++ +++|+|+|+|.- + .|
T Consensus 60 ~~l~Vp~G~~V~~~vts~-DV~-----Hsf~ip~----~~~---k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~~H- 124 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSP-DVI-----HGFHVEG----TNI---NVEVLPGEVSTVRYTF-KRPGEYRIICNQYCGLGH- 124 (135)
T ss_dssp SSEEEETTSEEEEEEEBS-SSC-----EEEEETT----SSC---EEEECBTBCEEEEEEC-CSCEEEEEECCSCCSTTS-
T ss_pred CEEEEcCCCEEEEEEEeC-Ccc-----ceEEecC----CCc---eeEeCCCCcEEEEEEc-CCCEEEEEECcccCCCCc-
Confidence 489999999999999997 333 3332221 111 1346799989999998 589999999963 2 23
Q ss_pred hccceeEEEEec
Q 009127 136 AAGAFGGIRIWS 147 (543)
Q Consensus 136 ~~Gl~G~liV~~ 147 (543)
.+|.|.++|.+
T Consensus 125 -~~M~g~v~V~~ 135 (135)
T 2cua_A 125 -QNMFGTIVVKE 135 (135)
T ss_dssp -TTCEEEEEEEC
T ss_pred -CCCEEEEEEEC
Confidence 48999998864
No 126
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=96.85 E-value=0.006 Score=54.33 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=60.2
Q ss_pred EEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCccccee
Q 009127 48 QGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFY 127 (543)
Q Consensus 48 ~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wY 127 (543)
.+...+-++--..|.++.|++|++.++|. +-.++....++.. +..+.||+...+.|++ +++|+|++
T Consensus 82 ~m~a~~~~f~Pn~l~VP~G~~Vr~~vTS~-DViHsf~IP~lgi------------k~da~PG~~n~~~~~~-~kpG~y~g 147 (168)
T 3s8f_B 82 YVLAFAFGYQPNPIEVPQGAEIVFKITSP-DVIHGFHVEGTNI------------NVEVLPGEVSTVRYTF-KRPGEYRI 147 (168)
T ss_dssp EEEEETTEEESSSEEEETTSEEEEEEECS-SSCEEEEETTSSC------------EEEECTTBCEEEEEEC-CSCEEEEE
T ss_pred EEEEEeceEecCEEEEeCCCeEEEEEecC-CceEEEEECCCCe------------EEEecCCceeEEEEEe-CCCEEEEE
Confidence 33444444434689999999999999997 4443333332211 2346799999999998 58999999
Q ss_pred cCCc-hhhhhccceeEEEEec
Q 009127 128 FPSF-LFHKAAGAFGGIRIWS 147 (543)
Q Consensus 128 H~H~-~~q~~~Gl~G~liV~~ 147 (543)
.|.- -.....+|.|-++|++
T Consensus 148 ~Cse~CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 148 ICNQYCGLGHQNMFGTIVVKE 168 (168)
T ss_dssp ECCSCCSTTGGGCEEEEEEEC
T ss_pred ECCcCCCCCcCCCEEEEEEeC
Confidence 9983 3344457999999874
No 127
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=96.48 E-value=0.0086 Score=50.61 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=46.9
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.++++.|++|.|+..+. .|-+.++- +.. ++.... +.+.+|.... ++++.||.|
T Consensus 22 ~i~V~~GdtV~f~~~~~---~H~v~~~~----------~~~-p~~~~~-----------~~~~pG~t~~--~tF~~~G~y 74 (123)
T 1paz_A 22 YIKANPGDTVTFIPVDK---GHNVESIK----------DMI-PEGAEK-----------FKSKINENYV--LTVTQPGAY 74 (123)
T ss_dssp EEEECTTCEEEEEESSS---SCCCEECT----------TCS-CTTCCC-----------CBCCTTCCEE--EECCSCEEE
T ss_pred EEEECCCCEEEEEECCC---CeEEEEec----------ccC-CCCccc-----------eecCCCCEEE--EEeCCCEEE
Confidence 46788999998876543 35544431 101 111101 1123666544 455899999
Q ss_pred eeeecchhhhhcccEEEEEEec
Q 009127 493 NIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~ 514 (543)
.|+|-. |..+||.+.+.|.+
T Consensus 75 ~y~C~~--H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 75 LVKCTP--HYAMGMIALIAVGD 94 (123)
T ss_dssp EEECTT--TGGGTCEEEEEESS
T ss_pred EEEeCC--cccCCCEEEEEEcC
Confidence 999984 99999999999976
No 128
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=96.08 E-value=0.0084 Score=50.65 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCCEEEEEEEecCcccceeeecchhhhhcccEEEEEEec
Q 009127 475 YPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 475 p~~g~v~irf~adnpG~w~~HCHil~Hed~GMm~~~~V~~ 514 (543)
.+|+...+ +++.||.|.|+|-. |..+||.+.+.|.+
T Consensus 59 ~pG~t~~~--tF~~~G~y~y~C~~--H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 59 TVGQEAVV--KFDKEGVYGFKCAP--HYMMGMVALVVVGD 94 (123)
T ss_dssp CTTSCEEE--ECCSCEEEEEECST--TTTTTCEEEEEESS
T ss_pred CCCCEEEE--EeCCCeEEEEEeCC--ccccCCEEEEEEcC
Confidence 46776554 45899999999985 99999999999976
No 129
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.01 E-value=0.017 Score=60.72 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=58.8
Q ss_pred eEEecCCCcEEEEEEEeCC---CCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecC
Q 009127 412 SVMAANFREFVEIVFQNWE---DTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDN 488 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn 488 (543)
..+.++.|+.|+|++.|.+ +..|.|.+.+... -+.+.||....+.|+++.
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPslGI---------------------------K~DaiPGrtnsvtFtadk 610 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHGV---------------------------SMEISPQQTSSITFVADK 610 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTE---------------------------EEEECTTCEEEEEEECCS
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecCCCc---------------------------eeeeCCCCeEEEEEEcCC
Confidence 4577899999999999974 5677777654321 124667888999999999
Q ss_pred cccceeeecchhhh-hcccEEEEEEe
Q 009127 489 VGMWNIRSENWARQ-YLGQQFYLRVY 513 (543)
Q Consensus 489 pG~w~~HCHil~He-d~GMm~~~~V~ 513 (543)
||.|.+||...-|. +.+|.+.+.|+
T Consensus 611 PGvY~y~CSE~CGa~Hs~M~G~ViVE 636 (638)
T 3sbq_A 611 PGLHWYYCSWFCHALHMEMVGRMMVE 636 (638)
T ss_dssp CEEEEEECCSCCSTTCTTCEEEEEEE
T ss_pred CEEEEEECCCcCCCCcccceEEEEEe
Confidence 99999999976654 56899999885
No 130
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=95.59 E-value=0.031 Score=49.70 Aligned_cols=87 Identities=5% Similarity=-0.035 Sum_probs=60.5
Q ss_pred EEec-CCCcEEEEEEEeCCCCC-----CCeeecCCCeEEEeecC-----------C--CCCCCCCCCCCCCCCCcceeEE
Q 009127 413 VMAA-NFREFVEIVFQNWEDTV-----QSYHIDGYSFFVVGMDG-----------G--QWTPASRTRYNLRDTVARSTTQ 473 (543)
Q Consensus 413 ~~~~-~~g~~v~~~i~N~~~~~-----HP~HlHG~~F~Vl~~~~-----------g--~~~~~~~~~~~~~~p~~rDTv~ 473 (543)
.+++ +.|+.|.|+|.|.+..+ |-|- +...+. + .+-+.+ .......+..
T Consensus 59 ~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~v-------i~~~~~~~~v~~~~m~~~~~~~v~~~------d~~vl~~t~~ 125 (167)
T 3ay2_A 59 DIQVSKACKEFTITLKHTGTQPKASMGHNLV-------IAKAEDMDGVFKDGVGAADTDYVKPD------DARVVAHTKL 125 (167)
T ss_dssp EEEEETTCSSEEEEEEECSCSCHHHHCBCCE-------EEEGGGHHHHHHHHGGGGGGTTSCTT------CTTEEEECCC
T ss_pred eEEEecCCCEEEEEEEECCCCccccccceEE-------eccCcchhhhHHHhhhcccccccccc------ccchhcccee
Confidence 4778 89999999999987653 4433 322210 0 000000 0012334667
Q ss_pred eCCCCEEEEEEEec--CcccceeeecchhhhhcccEEEEEEe
Q 009127 474 VYPRSWTAIYMALD--NVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 474 vp~~g~v~irf~ad--npG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|.+|+...|.|.++ .||.|-|+|-+--|.. ||-+.+.|.
T Consensus 126 l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 126 IGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp BCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred eCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 88999999999988 8999999999988988 899999886
No 131
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=95.39 E-value=0.047 Score=46.80 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=50.2
Q ss_pred EecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccce
Q 009127 414 MAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWN 493 (543)
Q Consensus 414 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 493 (543)
+.++.|+.|+|++.|.+ ..|. |.|-+.+ . -+.+.||....+.|.++.||.|.
T Consensus 62 l~Vp~G~~V~~~vts~D-V~Hs-------f~ip~~~-----------------~---k~d~~PG~~~~~~~~~~~~G~y~ 113 (135)
T 2cua_A 62 IEVPQGAEIVFKITSPD-VIHG-------FHVEGTN-----------------I---NVEVLPGEVSTVRYTFKRPGEYR 113 (135)
T ss_dssp EEEETTSEEEEEEEBSS-SCEE-------EEETTSS-----------------C---EEEECBTBCEEEEEECCSCEEEE
T ss_pred EEEcCCCEEEEEEEeCC-ccce-------EEecCCC-----------------c---eeEeCCCCcEEEEEEcCCCEEEE
Confidence 56789999999999974 3343 4431110 0 13345677788999999999999
Q ss_pred eeecc---hhhhhcccEEEEEEe
Q 009127 494 IRSEN---WARQYLGQQFYLRVY 513 (543)
Q Consensus 494 ~HCHi---l~Hed~GMm~~~~V~ 513 (543)
++|.. ..| .+|-..+.|.
T Consensus 114 ~~C~e~CG~~H--~~M~g~v~V~ 134 (135)
T 2cua_A 114 IICNQYCGLGH--QNMFGTIVVK 134 (135)
T ss_dssp EECCSCCSTTS--TTCEEEEEEE
T ss_pred EECcccCCCCc--CCCEEEEEEE
Confidence 99976 445 5899988886
No 132
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=95.10 E-value=0.036 Score=46.61 Aligned_cols=71 Identities=6% Similarity=0.011 Sum_probs=44.9
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|++|.|+. .+. .|-+++.. +.+. ..... +.+.+++...+.| +.||.|
T Consensus 22 ~i~V~~GdtV~f~n--~d~-~H~v~~~~----------~~~p-~~~~~-----------~~~~~g~t~~~tF--~~~G~y 74 (122)
T 2ux6_A 22 SLKVAPGDTVTFIP--TDK-GHNVETIK----------GMIP-DGAEA-----------FKSKINENYKVTF--TAPGVY 74 (122)
T ss_dssp EEEECTTEEEEEEE--SSS-SCCCEECT----------TCSC-TTCCC-----------CBCCTTCCEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEEE--CCC-CcEEEEcc----------cccC-CCcce-----------eecCCCCEEEEEe--CCCEEE
Confidence 46788999988874 433 56655543 1111 10001 1224666655555 899999
Q ss_pred eeeecchhhhhcccEEEEEEec
Q 009127 493 NIRSENWARQYLGQQFYLRVYS 514 (543)
Q Consensus 493 ~~HCHil~Hed~GMm~~~~V~~ 514 (543)
.|+|-+ |.. |.+.+.|.+
T Consensus 75 ~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 75 GVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEETT--EEE--EEEEEEESS
T ss_pred EEEeCC--Ccc--CEEEEEEeC
Confidence 999988 655 999999976
No 133
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=94.94 E-value=0.082 Score=44.86 Aligned_cols=87 Identities=7% Similarity=0.001 Sum_probs=60.6
Q ss_pred EEecCCC-cEEEEEEEeCCCCC-----CCeeecCCCeEEEeecC-----------C---CCCCCCCCCCCCCCCCcceeE
Q 009127 413 VMAANFR-EFVEIVFQNWEDTV-----QSYHIDGYSFFVVGMDG-----------G---QWTPASRTRYNLRDTVARSTT 472 (543)
Q Consensus 413 ~~~~~~g-~~v~~~i~N~~~~~-----HP~HlHG~~F~Vl~~~~-----------g---~~~~~~~~~~~~~~p~~rDTv 472 (543)
.++++.| +.+.+++.|.+..+ |-|- +...+. + .+.+.+ ..-....+.
T Consensus 19 ~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~v-------i~~~~~~~~~~~~~m~~~~~~~~v~~~------~~~~~~~t~ 85 (129)
T 1cuo_A 19 SISVPASCAEFTVNFEHKGHMPKTGMGHNWV-------LAKSADVGDVAKEGAHAGADNNFVTPG------DKRVIAFTP 85 (129)
T ss_dssp EEEEETTCSEEEEEEEECSSSCHHHHCBCCE-------EEEGGGHHHHHHHHHTTCGGGTTSCTT------CTTCSEECC
T ss_pred eEEEcCCCeEEEEEEEECCCCcccccccceE-------EecCcchhhhHHHhhhccccccccccc------cccceeeee
Confidence 4778999 99999999987543 5443 332210 0 010000 001233456
Q ss_pred EeCCCCEEEEEEEec---CcccceeeecchhhhhcccEEEEEEe
Q 009127 473 QVYPRSWTAIYMALD---NVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 473 ~vp~~g~v~irf~ad---npG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|.||+...+.|.++ .||.|-|.|-+--|.. ||-+.+.|.
T Consensus 86 ~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 86 IIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred EECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 688999999999997 8999999999888888 899999885
No 134
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=94.24 E-value=0.12 Score=43.69 Aligned_cols=91 Identities=7% Similarity=-0.036 Sum_probs=59.7
Q ss_pred EEec-CCCcEEEEEEEeCCCCC-----CCeeecCCCeEEEeecCCCCCC--------CCCCCC-CCCC-CCcceeEEeCC
Q 009127 413 VMAA-NFREFVEIVFQNWEDTV-----QSYHIDGYSFFVVGMDGGQWTP--------ASRTRY-NLRD-TVARSTTQVYP 476 (543)
Q Consensus 413 ~~~~-~~g~~v~~~i~N~~~~~-----HP~HlHG~~F~Vl~~~~g~~~~--------~~~~~~-~~~~-p~~rDTv~vp~ 476 (543)
.+++ +.|+.+.+++.|.+..+ |-|-| ...+ .... .....| .-.+ .....|..|.|
T Consensus 18 ~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi-------~~~~--~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~p 88 (128)
T 2iaa_C 18 SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVV-------SKKS--DESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGG 88 (128)
T ss_dssp EEEECTTCSEEEEEEEECSCSCHHHHCBCCEE-------EETT--HHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCT
T ss_pred EEEEecCCcEEEEEEEECCCCcccCCCceEEE-------cccc--chhhHHHhhhhccccccccccccchhhccceeeCC
Confidence 4678 78999999999987653 65433 2211 0000 000000 0001 11234556899
Q ss_pred CCEEEEEEEec--Cccc-ceeeecchhhhhcccEEEEEEe
Q 009127 477 RSWTAIYMALD--NVGM-WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 477 ~g~v~irf~ad--npG~-w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|+...+.|.+. .+|. |-|.|-+--|.. ||-+.+.|.
T Consensus 89 Ges~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 89 GETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp TCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred CCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 99999999998 8995 999999988888 999999885
No 135
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=93.49 E-value=0.24 Score=43.86 Aligned_cols=73 Identities=11% Similarity=0.172 Sum_probs=53.8
Q ss_pred EecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccce
Q 009127 414 MAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWN 493 (543)
Q Consensus 414 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 493 (543)
+.++.|+.++|.+.|. +..|.|-+=... .. +.+-||..-.+.|.++.||.|.
T Consensus 95 l~VP~G~~Vr~~vTS~-DViHsf~IP~lg------------------------ik---~da~PG~~n~~~~~~~kpG~y~ 146 (168)
T 3s8f_B 95 IEVPQGAEIVFKITSP-DVIHGFHVEGTN------------------------IN---VEVLPGEVSTVRYTFKRPGEYR 146 (168)
T ss_dssp EEEETTSEEEEEEECS-SSCEEEEETTSS------------------------CE---EEECTTBCEEEEEECCSCEEEE
T ss_pred EEEeCCCeEEEEEecC-CceEEEEECCCC------------------------eE---EEecCCceeEEEEEeCCCEEEE
Confidence 5578999999999997 455665542211 11 2344677788999999999999
Q ss_pred eeecc-hhhhhcccEEEEEEec
Q 009127 494 IRSEN-WARQYLGQQFYLRVYS 514 (543)
Q Consensus 494 ~HCHi-l~Hed~GMm~~~~V~~ 514 (543)
+.|.. --+.+.+|.+.+.|.+
T Consensus 147 g~Cse~CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 147 IICNQYCGLGHQNMFGTIVVKE 168 (168)
T ss_dssp EECCSCCSTTGGGCEEEEEEEC
T ss_pred EECCcCCCCCcCCCEEEEEEeC
Confidence 99985 4466789999998863
No 136
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=93.31 E-value=0.25 Score=41.86 Aligned_cols=91 Identities=7% Similarity=-0.045 Sum_probs=59.3
Q ss_pred EEec-CCCcEEEEEEEeCCCCC-----CCeeecCCCeEEEeecCCCCCC--------CCCCCCCC-CC-CCcceeEEeCC
Q 009127 413 VMAA-NFREFVEIVFQNWEDTV-----QSYHIDGYSFFVVGMDGGQWTP--------ASRTRYNL-RD-TVARSTTQVYP 476 (543)
Q Consensus 413 ~~~~-~~g~~v~~~i~N~~~~~-----HP~HlHG~~F~Vl~~~~g~~~~--------~~~~~~~~-~~-p~~rDTv~vp~ 476 (543)
.+++ +.|+.+.+++.|.+..+ |-|-| ...+ .... .....|-. .+ .....+..|.|
T Consensus 19 ~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~p 89 (129)
T 2ccw_A 19 EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVL-------TKDA--DKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGG 89 (129)
T ss_dssp EEEECTTCSEEEEEEEECSCCCHHHHCBCCEE-------EEGG--GHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCT
T ss_pred eEEEecCCCEEEEEEEECCCcccccCcceEEE-------cCcc--chhhhHHHhhhhcccccccccccccceeeeeEECC
Confidence 4778 88999999999987653 54433 2221 0000 00000000 00 11234556889
Q ss_pred CCEEEEEEEec--Cccc-ceeeecchhhhhcccEEEEEEe
Q 009127 477 RSWTAIYMALD--NVGM-WNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 477 ~g~v~irf~ad--npG~-w~~HCHil~Hed~GMm~~~~V~ 513 (543)
|+...|.|.++ .+|. |-|.|-+--|.. ||-+.+.|.
T Consensus 90 Get~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 90 GESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp TCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred CCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 99999999998 7876 999999888888 899999885
No 137
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=92.89 E-value=0.45 Score=40.18 Aligned_cols=92 Identities=8% Similarity=-0.028 Sum_probs=58.9
Q ss_pred EEec-CCCcEEEEEEEeCCCCC-----CCeeecCCCeEEEeecCC------CCCCCCCCCC-CCCC-CCcceeEEeCCCC
Q 009127 413 VMAA-NFREFVEIVFQNWEDTV-----QSYHIDGYSFFVVGMDGG------QWTPASRTRY-NLRD-TVARSTTQVYPRS 478 (543)
Q Consensus 413 ~~~~-~~g~~v~~~i~N~~~~~-----HP~HlHG~~F~Vl~~~~g------~~~~~~~~~~-~~~~-p~~rDTv~vp~~g 478 (543)
.+++ +.|+.+.+++.|.+..+ |-|-| ...+.- .........| .-.+ .....|-.|.||+
T Consensus 19 ~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi-------~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGe 91 (128)
T 1nwp_A 19 DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVI-------SKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGE 91 (128)
T ss_dssp EEEECTTCSEEEEEEEECSSCCHHHHCBCCEE-------EEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTC
T ss_pred EEEEecCCCEEEEEEEECCCCcccCCCceEEE-------ccccchhhHHHHHhhccccccccccccchhheeeeeeCCCC
Confidence 4778 89999999999987553 55443 221100 0000000000 0001 1123455689999
Q ss_pred EEEEEEEec--Cccc-ceeeecchhhhhcccEEEEEE
Q 009127 479 WTAIYMALD--NVGM-WNIRSENWARQYLGQQFYLRV 512 (543)
Q Consensus 479 ~v~irf~ad--npG~-w~~HCHil~Hed~GMm~~~~V 512 (543)
...+.|.+. .||. |-|.|-+--|.. ||-+.+.|
T Consensus 92 t~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V 127 (128)
T 1nwp_A 92 KDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTL 127 (128)
T ss_dssp EEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEE
T ss_pred EEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEE
Confidence 999999998 7877 999999988888 89998887
No 138
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=89.57 E-value=1.4 Score=36.87 Aligned_cols=96 Identities=6% Similarity=0.005 Sum_probs=58.2
Q ss_pred eEEecCC-CcEEEEEEEeCCCCCCCeeecCCCeEEEeecCC-CC--CC--CC-CCCC-C-CCCCCcceeEEeCCCCEEEE
Q 009127 412 SVMAANF-REFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGG-QW--TP--AS-RTRY-N-LRDTVARSTTQVYPRSWTAI 482 (543)
Q Consensus 412 ~~~~~~~-g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g-~~--~~--~~-~~~~-~-~~~p~~rDTv~vp~~g~v~i 482 (543)
.-++++. |+.+.++|.|.+..+ --.=||.|-+...+.- .. .. .. ...| . -.......|..|.||+...|
T Consensus 18 ~~i~V~~~Ge~V~~~l~N~G~~p--~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~v 95 (125)
T 3fsa_A 18 NAITVDKSCKQFTVNLSHPGNLP--KNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSV 95 (125)
T ss_dssp SEEEECTTCSEEEEEEECCSSCC--HHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEE
T ss_pred CEEEEecCCCEEEEEEEECCccc--ccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEE
Confidence 3477875 999999999997552 1111234433321100 00 00 00 0011 0 01234556778999999999
Q ss_pred EEEec---CcccceeeecchhhhhcccEEEEEEe
Q 009127 483 YMALD---NVGMWNIRSENWARQYLGQQFYLRVY 513 (543)
Q Consensus 483 rf~ad---npG~w~~HCHil~Hed~GMm~~~~V~ 513 (543)
.|.+. .+|.|-|-|- -|. ||-+.+.|.
T Consensus 96 tf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 96 TFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp EEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred EEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 99987 8999999999 788 999998873
No 139
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=82.54 E-value=8.4 Score=31.80 Aligned_cols=71 Identities=20% Similarity=0.362 Sum_probs=49.6
Q ss_pred cCCEE--EEEEEEcCCcceEEEEEe-CCeeEEEEE--cCcccc--------ccccCeEEEcCCCeEEEEEEeCC--CCcc
Q 009127 209 PGRTY--RFRISNVGLTTSINFRIQ-GHSMKLVEV--EGSHTL--------QNTYAALDIHLGQTYSVLVTMDQ--APQD 273 (543)
Q Consensus 209 ~G~~~--rlRiiN~~~~~~~~~~i~-g~~~~via~--DG~~~~--------p~~~~~v~l~pgeR~dv~v~~~~--~~g~ 273 (543)
.|+.+ .|.+.|.+.. ...+.+. |+.+.++-. +|..+- ........|.|||...+-+..++ .||.
T Consensus 16 ~g~~v~~~ltv~N~s~~-~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~ 94 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSER-AIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGT 94 (120)
T ss_dssp CSSCEEEEEEEEECSSS-CEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEE
T ss_pred CCCeEEEEEEEEcCCCC-cEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCcc
Confidence 45544 5678898885 5666664 555454444 476541 23456899999999999999984 5899
Q ss_pred eEEEEee
Q 009127 274 YYIVVSS 280 (543)
Q Consensus 274 y~i~~~~ 280 (543)
|.+.+..
T Consensus 95 Ytl~a~l 101 (120)
T 3isy_A 95 YEVKVTF 101 (120)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998754
No 140
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=71.29 E-value=7.9 Score=35.14 Aligned_cols=74 Identities=14% Similarity=-0.077 Sum_probs=51.3
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCc-hhhhhc
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSF-LFHKAA 137 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~-~~q~~~ 137 (543)
..|.+..|+.|++.+++. +--++.-...+. .+.-+-||..-...|.+ +++|+|+..|.- -.....
T Consensus 41 n~l~lP~g~~V~~~lTS~-DViHSF~IP~lg------------vK~daiPGr~n~l~~~~-~~pG~y~g~CsE~CG~~Hs 106 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSN-SVMHSFFIPRLG------------SQIYAMAGMQTRLHLIA-NEPGTYDGICAEICGPGHS 106 (205)
T ss_dssp SEEEEETTSCEEEEEEES-SSCEEEEEGGGT------------EEEEECTTCCEEEEECC-SSSEEEEEEECSCCSTTST
T ss_pred ceEEEeCCCEEEEEEecC-CceeeEEecccC------------cEEEecCCceEEEEEEe-CCCeEEEEEcccccccchh
Confidence 379999999999999986 222233222221 12445689999999998 589999999982 222333
Q ss_pred cceeEEEEe
Q 009127 138 GAFGGIRIW 146 (543)
Q Consensus 138 Gl~G~liV~ 146 (543)
.|.+.++|.
T Consensus 107 ~M~~~v~vv 115 (205)
T 1cyx_A 107 GMKFKAIAT 115 (205)
T ss_dssp TCCEEEEEE
T ss_pred hceEEEEEE
Confidence 588888887
No 141
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=70.62 E-value=42 Score=27.54 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=49.1
Q ss_pred eeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCC----CcCCCCCeEEEEEEeCC
Q 009127 45 VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTT----CPIPPGKNFTYVLQAKD 120 (543)
Q Consensus 45 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq----~~i~PG~~~~y~f~~~~ 120 (543)
....+...|-+--.=+|+..-|.+..+.|.+.-.+ ..| -|+||-..+| ..|+||++.+|+...++
T Consensus 20 v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~---~Vw--------rwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~ 88 (120)
T 3isy_A 20 IKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHK---ERY--------RYSKEKMFTQAFQNLTLESGETYDFSDVWKE 88 (120)
T ss_dssp EEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCC---EEE--------ETTTTCCCCCCCEEEEECTTCEEEEEEEESS
T ss_pred EEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCC---EEE--------EccccchhhhhhceEEECCCCEEEEEEEeCC
Confidence 34445555554434577888888888887775221 111 1477766544 45999999999999973
Q ss_pred --CcccceecCC
Q 009127 121 --QIGSYFYFPS 130 (543)
Q Consensus 121 --~~Gt~wYH~H 130 (543)
.+|+|..+.-
T Consensus 89 ~~~pG~Ytl~a~ 100 (120)
T 3isy_A 89 VPEPGTYEVKVT 100 (120)
T ss_dssp CCCSEEEEEEEE
T ss_pred CCCCccEEEEEE
Confidence 4899977653
No 142
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=69.08 E-value=23 Score=32.14 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=47.7
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
...+.+..|+.+||+|-+... .|.|.|.....+ +..-||..-.+.+.++ .+|.|+..|...
T Consensus 40 ~n~l~lP~g~~V~~~lTS~DV--iHSF~IP~lgvK----------------~daiPGr~n~l~~~~~-~pG~y~g~CsE~ 100 (205)
T 1cyx_A 40 VNEIAFPANTPVYFKVTSNSV--MHSFFIPRLGSQ----------------IYAMAGMQTRLHLIAN-EPGTYDGICAEI 100 (205)
T ss_dssp ESEEEEETTSCEEEEEEESSS--CEEEEEGGGTEE----------------EEECTTCCEEEEECCS-SSEEEEEEECSC
T ss_pred cceEEEeCCCEEEEEEecCCc--eeeEEecccCcE----------------EEecCCceEEEEEEeC-CCeEEEEEcccc
Confidence 357899999999999988654 678877765444 3455777777888777 799999999765
Q ss_pred cC
Q 009127 282 FT 283 (543)
Q Consensus 282 ~~ 283 (543)
.+
T Consensus 101 CG 102 (205)
T 1cyx_A 101 CG 102 (205)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 143
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=63.84 E-value=17 Score=29.66 Aligned_cols=46 Identities=15% Similarity=0.423 Sum_probs=32.0
Q ss_pred EEEEEEEEcCC-cceEEEEEeCC-eeEEEEEcCccccccccCeEEEcCCCeEEEEEEe
Q 009127 212 TYRFRISNVGL-TTSINFRIQGH-SMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTM 267 (543)
Q Consensus 212 ~~rlRiiN~~~-~~~~~~~i~g~-~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~ 267 (543)
.|+|+|+|.+. .+.+.|.+.|. .+.++ | + ..+.+.|||..++-|..
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~---g----~---~~i~v~~g~~~~~~v~v 81 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWY---G----K---QTIQVEPGEVLNLPMSL 81 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEE---S----C---CEEEECTTCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEe---C----C---CcEEECCCCEEEEEEEE
Confidence 59999999997 45677777774 23332 2 1 24899999987776654
No 144
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=57.10 E-value=26 Score=33.08 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=51.1
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCC--chhhhh
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPS--FLFHKA 136 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H--~~~q~~ 136 (543)
..|.+..|+.|++.+++. +--++.....+.. +.-+-||..-...|.+ +++|+|+..|. .+..-
T Consensus 171 n~l~lP~g~~v~~~~tS~-DViHsf~ip~l~~------------k~da~PG~~n~~~~~~-~~~G~y~g~Cse~CG~~H- 235 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGA-DVIHSWTVPAFGV------------KQDAVPGRLAQLWFRA-EREGIFFGQCSELCGISH- 235 (262)
T ss_dssp SCEEEETTSEEEEEEEES-SSCEEEEEGGGTE------------EEEECBTCCEEEEEEC-CSCEEEEECCCSCCSTTG-
T ss_pred ceEEEecCCEEEEEEEEC-cccceeeecccCc------------eEEecCCceeEEEEec-CCcEEEEEEChHhcccCc-
Confidence 469999999999999987 3333333332211 1335588888889998 58999999998 33322
Q ss_pred ccceeEEEEecC
Q 009127 137 AGAFGGIRIWSR 148 (543)
Q Consensus 137 ~Gl~G~liV~~~ 148 (543)
..|.+.+.|.++
T Consensus 236 ~~M~~~v~vv~~ 247 (262)
T 2gsm_B 236 AYMPITVKVVSE 247 (262)
T ss_dssp GGCCEEEEEECH
T ss_pred ccCeEEEEEEcH
Confidence 347777777653
No 145
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=55.49 E-value=16 Score=35.25 Aligned_cols=76 Identities=9% Similarity=0.168 Sum_probs=54.0
Q ss_pred EEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccc
Q 009127 413 VMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMW 492 (543)
Q Consensus 413 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w 492 (543)
.+.++.|+.|++.+.+.+ ..|.|.+=. -+ ...| +-||....+.|.++.||.|
T Consensus 190 ~lvlP~g~~V~~~ltS~D-ViHsf~iP~-------lg-----------------~k~d---aiPG~~n~~~~~~~~~G~y 241 (298)
T 3hb3_B 190 PVVVPVGKKVLVQVTATD-VIHAWTIPA-------FA-----------------VKQD---AVPGRIAQLWFSVDQEGVY 241 (298)
T ss_dssp CEEEESSSEEEEEEEESS-SCEEEEEGG-------GT-----------------EEEE---ECTTCCEEEEEECSSSEEE
T ss_pred eEEEEcCCEEEEEEEeCC-ccceeeEcc-------cC-----------------ceEE---ecCCceEEEEEEeCCCEEE
Confidence 466889999999999863 445555421 11 1223 2356677889999999999
Q ss_pred eeeecchh-hhhcccEEEEEEecCC
Q 009127 493 NIRSENWA-RQYLGQQFYLRVYSPA 516 (543)
Q Consensus 493 ~~HCHil~-Hed~GMm~~~~V~~p~ 516 (543)
...|.-+- .-|..|-..++|.+++
T Consensus 242 ~g~CsE~CG~~Hs~M~~~v~vvs~~ 266 (298)
T 3hb3_B 242 FGQCSELCGINHAYMPIVVKAVSQE 266 (298)
T ss_dssp EECCCSCCSTTTTSCCEEEEEECHH
T ss_pred EEEcccccCcCccCCeeEEEEEcHH
Confidence 99999644 4467788888888654
No 146
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=52.88 E-value=53 Score=30.95 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=47.5
Q ss_pred cceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeec
Q 009127 202 GYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSR 281 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 281 (543)
...+.++.|+.+||++-.... .|.|.+.....++ ..-||..-.+.+.++ .+|.|...|+..
T Consensus 170 dn~l~lP~g~~v~~~~tS~DV--iHsf~ip~l~~k~----------------da~PG~~n~~~~~~~-~~G~y~g~Cse~ 230 (262)
T 2gsm_B 170 DTAMVVPVNKTVVVQVTGADV--IHSWTVPAFGVKQ----------------DAVPGRLAQLWFRAE-REGIFFGQCSEL 230 (262)
T ss_dssp SSCEEEETTSEEEEEEEESSS--CEEEEEGGGTEEE----------------EECBTCCEEEEEECC-SCEEEEECCCSC
T ss_pred cceEEEecCCEEEEEEEECcc--cceeeecccCceE----------------EecCCceeEEEEecC-CcEEEEEEChHh
Confidence 356999999999999987644 6888887655443 455677777888887 799999998764
Q ss_pred cC
Q 009127 282 FT 283 (543)
Q Consensus 282 ~~ 283 (543)
++
T Consensus 231 CG 232 (262)
T 2gsm_B 231 CG 232 (262)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 147
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=52.05 E-value=37 Score=32.73 Aligned_cols=76 Identities=14% Similarity=0.006 Sum_probs=51.7
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCCc-hhhhhc
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPSF-LFHKAA 137 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H~-~~q~~~ 137 (543)
..|.+..|+.|++.+++. +--++.....+.. +.-+-||..-...|.+ +++|+|+..|.- -.....
T Consensus 189 N~lvlP~g~~V~~~ltS~-DViHsf~iP~lg~------------k~daiPG~~n~~~~~~-~~~G~y~g~CsE~CG~~Hs 254 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTAT-DVIHAWTIPAFAV------------KQDAVPGRIAQLWFSV-DQEGVYFGQCSELCGINHA 254 (298)
T ss_dssp SCEEEESSSEEEEEEEES-SSCEEEEEGGGTE------------EEEECTTCCEEEEEEC-SSSEEEEECCCSCCSTTTT
T ss_pred ceEEEEcCCEEEEEEEeC-CccceeeEcccCc------------eEEecCCceEEEEEEe-CCCEEEEEEcccccCcCcc
Confidence 579999999999999995 2222322222211 2334689888899998 589999999982 223333
Q ss_pred cceeEEEEecC
Q 009127 138 GAFGGIRIWSR 148 (543)
Q Consensus 138 Gl~G~liV~~~ 148 (543)
.|.+.+.|.++
T Consensus 255 ~M~~~v~vvs~ 265 (298)
T 3hb3_B 255 YMPIVVKAVSQ 265 (298)
T ss_dssp SCCEEEEEECH
T ss_pred CCeeEEEEEcH
Confidence 57777777764
No 148
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=49.64 E-value=23 Score=29.47 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=36.0
Q ss_pred CceEEEecCCEEEEEEEECCCCC-----ceee--cCcccCCCC-CCCCCCCCCCCcCCCCCeEEEEEEeC
Q 009127 58 GPQIDAVTNDNLIISVYNYLREP-----FLIS--WNGLQQRRN-SWQDGVYGTTCPIPPGKNFTYVLQAK 119 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~-----~~iH--~HG~~~~~~-~~~DG~p~tq~~i~PG~~~~y~f~~~ 119 (543)
.+.=.++.|..+.|.+.=..++. +.+| ..|+..+-. ...|+=-+..|||.+|+.++|.+..+
T Consensus 24 ~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~ 93 (129)
T 1xwv_A 24 SDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWN 93 (129)
T ss_dssp TSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEE
T ss_pred CCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeE
Confidence 45567788888888877332221 1222 234443321 12232212569999999999997774
No 149
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=48.66 E-value=13 Score=30.96 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=28.7
Q ss_pred EEEEEECCCCCc---eeecCcccCCCC---CCCCCCCCCCCcCCCCCeEEEEEEe
Q 009127 70 IISVYNYLREPF---LISWNGLQQRRN---SWQDGVYGTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 70 ~i~~~N~l~~~~---~iH~HG~~~~~~---~~~DG~p~tq~~i~PG~~~~y~f~~ 118 (543)
+|++.|..+... +=||.=....+. -.-+||.|.|.-|.||++|.|.=-.
T Consensus 34 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f~YtSg~ 88 (127)
T 2f1e_A 34 SIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGEAFHYTSGV 88 (127)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTCEEEEEEEE
T ss_pred EEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCCceEEeCCc
Confidence 466677665443 346643221111 1246776777889999988886443
No 150
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=47.13 E-value=49 Score=32.50 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.8
Q ss_pred CCcCCCCCeEEEEEEeCC
Q 009127 103 TCPIPPGKNFTYVLQAKD 120 (543)
Q Consensus 103 q~~i~PG~~~~y~f~~~~ 120 (543)
+.||+|||+.+.+.++.|
T Consensus 319 ~~pI~PGETr~~~v~a~d 336 (382)
T 1yew_A 319 NSPLAPGETRTVDVTASD 336 (382)
T ss_dssp CSCBCTTCEEEEEEEEEC
T ss_pred CCCcCCCceeEEEEEeeh
Confidence 478999999999999854
No 151
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=45.79 E-value=23 Score=29.47 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=35.9
Q ss_pred CceEEEecCCEEEEEEEECCCC---Cce--ee--cCcccCCC-CCCCCCCC-CCCCcCCCCCeEEEEEEeC
Q 009127 58 GPQIDAVTNDNLIISVYNYLRE---PFL--IS--WNGLQQRR-NSWQDGVY-GTTCPIPPGKNFTYVLQAK 119 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~---~~~--iH--~HG~~~~~-~~~~DG~p-~tq~~i~PG~~~~y~f~~~ 119 (543)
.+.=.++.|..+.|.+.=..++ ... +| ..|+..+. .+..|+=. ++.|||.+|+.++|.+.++
T Consensus 25 ~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lp 95 (130)
T 1nep_A 25 TQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLP 95 (130)
T ss_dssp SSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEE
T ss_pred CCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeE
Confidence 3566778888888877722221 111 22 23333321 12234332 2579999999999998875
No 152
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=45.44 E-value=13 Score=30.89 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=28.3
Q ss_pred EEEEEECCCCCc---eeecCcccCCCC---CCCCCCCCCCCcCCCCCeEEEEEEe
Q 009127 70 IISVYNYLREPF---LISWNGLQQRRN---SWQDGVYGTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 70 ~i~~~N~l~~~~---~iH~HG~~~~~~---~~~DG~p~tq~~i~PG~~~~y~f~~ 118 (543)
+|++.|...... +=||.=....+. -.-+||.|.|.-|.||++|.|.=-.
T Consensus 33 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f~YtSg~ 87 (126)
T 1xvs_A 33 LITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGT 87 (126)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTCEEEEEEEE
T ss_pred EEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCCceEEeCCc
Confidence 466667665443 346643221110 1235676677889999988887443
No 153
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=43.93 E-value=18 Score=30.69 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=28.5
Q ss_pred EEEEEECCCCCc---eeecCcccCCCC---CCCCCCCCCCCcCCCCCeEEEEEEe
Q 009127 70 IISVYNYLREPF---LISWNGLQQRRN---SWQDGVYGTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 70 ~i~~~N~l~~~~---~iH~HG~~~~~~---~~~DG~p~tq~~i~PG~~~~y~f~~ 118 (543)
.|++.|...... +=||.=....+. -.-+||.|.|.-|.||++|.|.=-.
T Consensus 38 ~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PGe~F~YtSg~ 92 (139)
T 1xq4_A 38 TVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGC 92 (139)
T ss_dssp EEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTCEEEEEEEE
T ss_pred EEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCCCceEEcCCc
Confidence 466677665443 346643221111 1245776777889999988887543
No 154
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=39.42 E-value=15 Score=30.83 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=28.0
Q ss_pred EEEEEECCCCCc---eeecCcccCCCC---CCCCCCCCCCCcCCCCCeEEEEEEe
Q 009127 70 IISVYNYLREPF---LISWNGLQQRRN---SWQDGVYGTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 70 ~i~~~N~l~~~~---~iH~HG~~~~~~---~~~DG~p~tq~~i~PG~~~~y~f~~ 118 (543)
+|++.|...... +=||.=....+. -.-+||.|.|.-|.||++|.|.=-.
T Consensus 33 ~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~F~YtSg~ 87 (134)
T 1tza_A 33 TITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGT 87 (134)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEEEEEEEE
T ss_pred EEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCceEEcCCc
Confidence 456667655443 345543221110 1245676677889999988887443
No 155
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=38.10 E-value=1.2e+02 Score=25.12 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=37.6
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCC--------CCCCCcCCCCCeEEEEEEeCCCccc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGV--------YGTTCPIPPGKNFTYVLQAKDQIGS 124 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~--------p~tq~~i~PG~~~~y~f~~~~~~Gt 124 (543)
|-+|.++.||++.|.|.-+-...++=.+... .+..-.|++ |.....+..|.+..+.|++. ++|+
T Consensus 32 ~~~I~v~~Ge~~~I~L~~NPTTGY~W~~~~~--~~~~L~~~~~~v~~~y~p~~~~~vGagG~~~w~f~A~-~~G~ 103 (131)
T 2h7w_A 32 GATLTVAVGELVEIQLPSNPTTGFAWYFEGG--TKESPNESMFTVENKYFPPDSKLLGAGGTEHFHVTVK-AAGT 103 (131)
T ss_dssp TCEEEECTTCEEEEEEEECGGGSCEEEBTTT--BSSCSCTTTEEEEEEEECCTTCCTTCCEEEEEEEEEC-SSEE
T ss_pred CCEEEEeCCCEEEEEeCCCCCCCeEEEEecC--CCccccccceeecceeeeCCCCCcCCCcEEEEEEEEc-cCce
Confidence 5689999999999999977544433332221 111112322 11112355677888888885 5765
No 156
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=36.95 E-value=64 Score=26.45 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=37.9
Q ss_pred eEEEecC-CEEEEEEEECCCCCce--eecCcccCCCCCCCC-----C----CC-CCCCcCCCCCeEEEEEEe
Q 009127 60 QIDAVTN-DNLIISVYNYLREPFL--ISWNGLQQRRNSWQD-----G----VY-GTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 60 ~i~v~~G-d~v~i~~~N~l~~~~~--iH~HG~~~~~~~~~D-----G----~p-~tq~~i~PG~~~~y~f~~ 118 (543)
.|.+++| ++++|+|+|.-+.+.- -|+|=..+...-..| | .| ||..-..||++.+.+...
T Consensus 18 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 89 (126)
T 4ac7_B 18 EIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTE 89 (126)
T ss_dssp EEETTTTSCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEE
T ss_pred CEEeCCCCcEEEEEEEeCCCCCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEEE
Confidence 4777777 6899999999987764 466665443221122 1 22 244556788888877765
No 157
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=36.95 E-value=64 Score=26.45 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=37.9
Q ss_pred eEEEecC-CEEEEEEEECCCCCce--eecCcccCCCCCCCC-----C----CC-CCCCcCCCCCeEEEEEEe
Q 009127 60 QIDAVTN-DNLIISVYNYLREPFL--ISWNGLQQRRNSWQD-----G----VY-GTTCPIPPGKNFTYVLQA 118 (543)
Q Consensus 60 ~i~v~~G-d~v~i~~~N~l~~~~~--iH~HG~~~~~~~~~D-----G----~p-~tq~~i~PG~~~~y~f~~ 118 (543)
.|.+++| ++++|+|+|.-+.+.- -|+|=..+...-..| | .| ||..-..||++.+.+...
T Consensus 18 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 89 (126)
T 4ubp_B 18 EIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTE 89 (126)
T ss_dssp EEETTTTSCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEE
T ss_pred CEEeCCCCcEEEEEEEeCCCCCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEEE
Confidence 4777777 6899999999987764 466665443221122 1 22 244556788888877765
No 158
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=36.14 E-value=77 Score=29.12 Aligned_cols=74 Identities=12% Similarity=-0.050 Sum_probs=49.3
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeCCCcccceecCC--chhhhh
Q 009127 59 PQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAKDQIGSYFYFPS--FLFHKA 136 (543)
Q Consensus 59 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~~~~Gt~wYH~H--~~~q~~ 136 (543)
..+.+..|..|++.++.. +--++.....+.. .+| .-||..-...|++ +++|+|+..|. .+..-
T Consensus 140 n~lvlP~~~~Vr~~vtS~-DViHsf~vP~lg~----K~D--------aiPGr~n~~~~~~-~~~G~y~g~Cse~CG~~H- 204 (227)
T 1v54_B 140 NRVVLPMEMTIRMLVSSE-DVLHSWAVPSLGL----KTD--------AIPGRLNQTTLMS-SRPGLYYGQCSEICGSNH- 204 (227)
T ss_dssp SCEEEETTSCEEEEEEES-SSCEEEEEGGGTE----EEE--------ECTTCCEEEEECC-SSCEEEEECCCSCCSTTG-
T ss_pred ceEEEecCCEEEEEEEeC-cccceeeecccCc----EEE--------ecCCceEEEEEec-CCcEEEEEEehhhccccc-
Confidence 689999999999999985 2333333333211 123 4578888888988 58999999997 33222
Q ss_pred ccceeEEEEec
Q 009127 137 AGAFGGIRIWS 147 (543)
Q Consensus 137 ~Gl~G~liV~~ 147 (543)
.-|.+.+.+.+
T Consensus 205 s~M~~~v~vv~ 215 (227)
T 1v54_B 205 SFMPIVLELVP 215 (227)
T ss_dssp GGCCEEEEEEC
T ss_pred ccCeEEEEEEc
Confidence 23666666654
No 159
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=35.51 E-value=32 Score=28.05 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=28.4
Q ss_pred EEEEeCCCcccceecCCchhhhhccceeEE-EEecCC
Q 009127 114 YVLQAKDQIGSYFYFPSFLFHKAAGAFGGI-RIWSRP 149 (543)
Q Consensus 114 y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~l-iV~~~~ 149 (543)
..+++ +.+|++||-|-...|=..||...| .|....
T Consensus 72 ~~v~l-~~~G~~yFic~~~~HC~~Gmkl~In~V~~~~ 107 (116)
T 1x9u_A 72 VKIML-NTTGPQYYICTVGDHCRVGQKLSINVVGAGG 107 (116)
T ss_dssp EEEEC-CSCEEEEEECCSTTTTTTTCEEEEEEECC--
T ss_pred eEEEE-CCCCCEEEECCCCCccccCCEEEEEEECCCC
Confidence 46777 479999999998888888999999 887654
No 160
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=33.73 E-value=2e+02 Score=23.63 Aligned_cols=66 Identities=9% Similarity=0.092 Sum_probs=43.0
Q ss_pred EEecCCEEE--EEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCC-CCcceEEEEee
Q 009127 206 TVEPGRTYR--FRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQ-APQDYYIVVSS 280 (543)
Q Consensus 206 ~v~~G~~~r--lRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~-~~g~y~i~~~~ 280 (543)
.+.+|+.+. ..+-|.|....-.+.+ .+ -.||..+. ...+.|++|+.-.|.+.... .+|.|.+.+..
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V-----~l-yvng~~v~---t~~v~La~G~s~tv~f~~~~~~~G~~~v~AvV 96 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKV-----RV-YINGTLYK---NWTVSLGPKEEKVLTFNWTPTQEGMYRINATV 96 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEE-----EE-EETTEEEE---EEEEEECTTCEEEEEEEECCSSCEEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEE-----EE-EECCEEEe---eEEeccCCCCeEEEEEEEEcCCCcEEEEEEEE
Confidence 678888765 5588999764333322 21 23666543 22457999999888887653 47888888754
No 161
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=33.43 E-value=45 Score=30.72 Aligned_cols=77 Identities=6% Similarity=0.088 Sum_probs=52.3
Q ss_pred eEEecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCccc
Q 009127 412 SVMAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGM 491 (543)
Q Consensus 412 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~ 491 (543)
+.+.++.|+.+++.+.+.+ -.|.| +|-+-+ ...|. -||..-.+.|.++.||.
T Consensus 140 n~lvlP~~~~Vr~~vtS~D-ViHsf-------~vP~lg-----------------~K~Da---iPGr~n~~~~~~~~~G~ 191 (227)
T 1v54_B 140 NRVVLPMEMTIRMLVSSED-VLHSW-------AVPSLG-----------------LKTDA---IPGRLNQTTLMSSRPGL 191 (227)
T ss_dssp SCEEEETTSCEEEEEEESS-SCEEE-------EEGGGT-----------------EEEEE---CTTCCEEEEECCSSCEE
T ss_pred ceEEEecCCEEEEEEEeCc-cccee-------eecccC-----------------cEEEe---cCCceEEEEEecCCcEE
Confidence 3466889999999999863 44544 442221 12342 24566778889999999
Q ss_pred ceeeecchhhh-hcccEEEEEEecCC
Q 009127 492 WNIRSENWARQ-YLGQQFYLRVYSPA 516 (543)
Q Consensus 492 w~~HCHil~He-d~GMm~~~~V~~p~ 516 (543)
+...|.-+-.. |.-|-..++|.+++
T Consensus 192 y~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (227)
T 1v54_B 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_dssp EEECCCSCCSTTGGGCCEEEEEECHH
T ss_pred EEEEehhhcccccccCeEEEEEEcHH
Confidence 99999865433 55677778887654
No 162
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=33.27 E-value=43 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=34.4
Q ss_pred EEEEEEEECCCCC---ceeecCcccCCCCCCCCCCCCCCCcCCCCCeEEEEEEeC-CCcccc
Q 009127 68 NLIISVYNYLREP---FLISWNGLQQRRNSWQDGVYGTTCPIPPGKNFTYVLQAK-DQIGSY 125 (543)
Q Consensus 68 ~v~i~~~N~l~~~---~~iH~HG~~~~~~~~~DG~p~tq~~i~PG~~~~y~f~~~-~~~Gt~ 125 (543)
.++|+++|-|+.+ -.++..|.-. ..+--..-..|.||++..+++... -.+|..
T Consensus 23 ~v~vsf~NPL~~~L~~c~~~vEG~GL-----~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~ 79 (102)
T 2xzz_A 23 EVQIVFKNPLPVTLTNVVFRLEGSGL-----QRPKILNVGDIGGNETVTLRQSFVPVRPGPR 79 (102)
T ss_dssp EEEEEEECCSSSCBCSEEEEEEETTT-----EEEEEEEECCBCTTCEEEEEEEECCCSCSSC
T ss_pred EEEEEEECCCCCcccCEEEEEECCCC-----CcceEEEcCcCCCCCEEEEEEEEecCcccce
Confidence 5678999999864 4577767421 222111124699999999999883 446653
No 163
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=32.71 E-value=76 Score=25.69 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=38.1
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeecCcccCCCCCCCCCCCC---------CCCcCCCCCeEEEEEEeCCCccc
Q 009127 58 GPQIDAVTNDNLIISVYNYLREPFLISWNGLQQRRNSWQDGVYG---------TTCPIPPGKNFTYVLQAKDQIGS 124 (543)
Q Consensus 58 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~p~---------tq~~i~PG~~~~y~f~~~~~~Gt 124 (543)
|-+|.++.||++.|.|.-+-...++=......-...-..+|... ....+..|.+..+.|++. ++|+
T Consensus 14 ~~~i~~~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~~l~~~gl~~~s~y~~~~~~~~~vG~gG~~~~~f~a~-~~G~ 88 (116)
T 2c34_A 14 DKWVDTHVGKTTEIHLKGNPTTGYMWTRVGFVGKDVLSDEILEVVCKYTPTPSSTPMVGVGGIYVVLVKPR-KRGH 88 (116)
T ss_dssp CCCEEECSSCCEEEEEECCTTSSCEEEETTCTTSSCCCCSSEEEEEEEECCCCSSSSSCCCCEEEEEEEEC-SSSS
T ss_pred CcEEEEcCCCEEEEEeCCCCCCCcEEEEecCCCcccccccccEEEEeEEeCCCCCCCcCCCceEEEEEEEe-CCce
Confidence 45899999999999999775544443333210000001112110 012255678899999995 6775
No 164
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=32.19 E-value=1.3e+02 Score=26.44 Aligned_cols=84 Identities=7% Similarity=-0.015 Sum_probs=46.6
Q ss_pred eEEEcCCCCCcceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccc----c-ccCe-EE-EcCCCeEEEE
Q 009127 192 GLLINGRGWNGYTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQ----N-TYAA-LD-IHLGQTYSVL 264 (543)
Q Consensus 192 ~~liNG~~~~~p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p----~-~~~~-v~-l~pgeR~dv~ 264 (543)
..+.|..+ .+.-.+..|+.+++|+-=......-.+.+ -|.+...+|..+-- . ..+- -. +.+|+.+.+.
T Consensus 53 v~l~d~~G--~~~~~~~~Ge~v~l~i~~~~~~~i~~~v~---G~~Ik~~~G~~I~g~nT~~~~~~~~~~~~~~G~~~~v~ 127 (188)
T 2r5o_A 53 YHIQSAGV--DFPPSLTGNQQTDFLMKVVFEYDFDCVVP---GILIKTLDGLFLYGTNSFLASEGRENISVSRGDVRVFK 127 (188)
T ss_dssp EEEEETTE--ESCSSEETTCEEEEEEEEEESSCEEEEEE---EEEEEETTCCEEEEEEHHHHTTTCCCEEECTTCEEEEE
T ss_pred EEEEECCC--CEeeEEeCCCEEEEEEEEEECCcCCccEE---EEEEECCCCCEEEecCcccccccccccccCCCCEEEEE
Confidence 44566666 56667889999888865544332222221 23444455555410 0 1111 23 6889966555
Q ss_pred EEeC--CCCcceEEEEee
Q 009127 265 VTMD--QAPQDYYIVVSS 280 (543)
Q Consensus 265 v~~~--~~~g~y~i~~~~ 280 (543)
+.++ =.+|+|.+.+.-
T Consensus 128 f~f~l~L~~G~Y~lsv~i 145 (188)
T 2r5o_A 128 FSLPVDLNSGDYLLSFGI 145 (188)
T ss_dssp EEEECCBCSEEEEEEEEE
T ss_pred EEEecccCCCeEEEEEEE
Confidence 5443 358999998754
No 165
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=31.22 E-value=2e+02 Score=27.07 Aligned_cols=72 Identities=7% Similarity=-0.015 Sum_probs=41.5
Q ss_pred eEEEecCCEE-------EEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEE
Q 009127 204 TFTVEPGRTY-------RFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYI 276 (543)
Q Consensus 204 ~~~v~~G~~~-------rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i 276 (543)
.+++++|+.+ .+=|||.+.. ..+..+|..+..++.=-....-..-+.+.|..|. +|.|++. .+..+.+
T Consensus 33 ~~~L~~Ge~~~~~~~~~E~~iv~l~G~--~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~--~v~i~a~-~~~~~~v 107 (270)
T 2qjv_A 33 VWQLXAGESITLPSDERERCLVLVAGL--ASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHT--EAXVTAE-TDLELAV 107 (270)
T ss_dssp EEEECTTCEEEECCSSEEEEEEEEESC--EEEEETTEEEEEECCCSSGGGCSCCCEEEECSSC--CEEEEES-SSEEEEE
T ss_pred EEEecCCCEEEecCCCcEEEEEEecce--EEEEECCEEEeccccccccccCCCCcEEEECCCC--EEEEEec-CCceEEE
Confidence 3445555544 4557887764 4567788877765311111111123789999999 5556666 3566666
Q ss_pred EEee
Q 009127 277 VVSS 280 (543)
Q Consensus 277 ~~~~ 280 (543)
-...
T Consensus 108 ~sAp 111 (270)
T 2qjv_A 108 CSAP 111 (270)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 5443
No 166
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=29.28 E-value=1.7e+02 Score=29.11 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred eeEEEEEECCcCCCceEEEecCCEEEEEEEECCCCCce---eecCcccCCCCCC-------------CCCCCCCCCcCCC
Q 009127 45 VKQQGILINGQFPGPQIDAVTNDNLIISVYNYLREPFL---ISWNGLQQRRNSW-------------QDGVYGTTCPIPP 108 (543)
Q Consensus 45 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~~---iH~HG~~~~~~~~-------------~DG~p~tq~~i~P 108 (543)
++.++..-+=+.||=+++++ ++|+|+-+++.. ...-|++...... .+|.- +..||+|
T Consensus 284 V~~~v~~A~Y~vpgR~l~~~------~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~pI~P 356 (419)
T 3rfr_A 284 VTTELNGGVYKVPGRELTIN------VKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS-NDDVIAP 356 (419)
T ss_dssp CEEEEEEEEEESSSSEEEEE------EEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC-CCCCBCT
T ss_pred eEEEEeceEEecCCcEEEEE------EEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC-CCCCcCC
Q ss_pred CCeEEEEEEeCC
Q 009127 109 GKNFTYVLQAKD 120 (543)
Q Consensus 109 G~~~~y~f~~~~ 120 (543)
||+.+.+.++.|
T Consensus 357 GETrt~~V~a~d 368 (419)
T 3rfr_A 357 GESKEIVVKIQD 368 (419)
T ss_dssp TCEEEEEEEEEC
T ss_pred CcceEEEEEeeh
No 167
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=28.14 E-value=2.8e+02 Score=27.04 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=41.6
Q ss_pred EEEEEEEEcCCcceEEE----EEeC---CeeEEEEEcCcccc----------ccccCeEEEcCCCeEEEEEEeCC-----
Q 009127 212 TYRFRISNVGLTTSINF----RIQG---HSMKLVEVEGSHTL----------QNTYAALDIHLGQTYSVLVTMDQ----- 269 (543)
Q Consensus 212 ~~rlRiiN~~~~~~~~~----~i~g---~~~~via~DG~~~~----------p~~~~~v~l~pgeR~dv~v~~~~----- 269 (543)
++..=|-|.|.. .+.| -+++ ..|.| ..||..++ |..-+-+.|+|||.+++.|++..
T Consensus 39 ~vk~tvtN~g~~-~~~lLk~~~lD~~~~~~~~V-~~~G~~v~f~Gi~~~~~~~~~d~f~~L~pG~Sve~~~dla~~ydLs 116 (343)
T 2x3c_A 39 RVNLTLTNTGDK-PIRLLKWQLPGSDDAPLFLV-ERDGQPVSYEGALIKRAAPTDKDFQLLKAGQSLTVQAEVSGLYDMS 116 (343)
T ss_dssp EEEEEEEECSSS-CEEEEGGGSCSSSCCCCEEE-EETTEECCBCSCCCCCCCCCGGGEEEECTTCEEEEEEECTTTBTCC
T ss_pred EEEEEEEeCCCC-ceEeeccCCCCcCccceEEE-EeCCcccceeeEEEeccCCChhhcEEeCCCCeEEEEEehhhccccC
Confidence 445556666654 2322 1222 24555 46776542 22346789999999999999864
Q ss_pred CCcceEEEEee
Q 009127 270 APQDYYIVVSS 280 (543)
Q Consensus 270 ~~g~y~i~~~~ 280 (543)
.+|.|.+.+..
T Consensus 117 ~gG~y~v~~~g 127 (343)
T 2x3c_A 117 AQGQYSIRYQL 127 (343)
T ss_dssp SCEEEEEEEC-
T ss_pred CCceEEEEEee
Confidence 46889998764
No 168
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=26.21 E-value=76 Score=30.74 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=44.9
Q ss_pred ceEEEecCCEEEEEEEEcCCcceEEEEEeCCeeEEEEEcCccccccccCeEEEcCCCeEEEEEEeCCCCcceEEEEeecc
Q 009127 203 YTFTVEPGRTYRFRISNVGLTTSINFRIQGHSMKLVEVEGSHTLQNTYAALDIHLGQTYSVLVTMDQAPQDYYIVVSSRF 282 (543)
Q Consensus 203 p~~~v~~G~~~rlRiiN~~~~~~~~~~i~g~~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 282 (543)
..+.+..|+.+||++-.. .-.|.|.+.....++ ..-||..-.+.+.++ .+|.|...|....
T Consensus 151 n~l~lP~g~~V~~~lTS~--DViHsf~IP~lg~k~----------------DaiPGr~n~~~~~~~-~~G~y~g~CsE~C 211 (315)
T 1fft_B 151 NEIAFPANTPVYFKVTSN--SVMNSFFIPRLGSQI----------------YAMAGMQTRLHLIAN-EPGTYDGISASYS 211 (315)
T ss_dssp SBCCCCSSSEEEEEECBS--SSCEEEEEGGGTEEE----------------EECBTSCEEEEEECC-SCBCCEEBCCSCC
T ss_pred ceEEEeCCCEEEEEEEeC--CccceeeecccCcEE----------------eecCCcceeeEEecC-CCeEEEEeccccc
Confidence 457788999999988654 346888877654443 455677778888888 7999999987643
No 169
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=25.16 E-value=49 Score=32.14 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=50.3
Q ss_pred EecCCCcEEEEEEEeCCCCCCCeeecCCCeEEEeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEecCcccce
Q 009127 414 MAANFREFVEIVFQNWEDTVQSYHIDGYSFFVVGMDGGQWTPASRTRYNLRDTVARSTTQVYPRSWTAIYMALDNVGMWN 493 (543)
Q Consensus 414 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 493 (543)
+.++.|+.|++.+.+.+ -.|.| +|-+-+ ...|. -||-...+.|.++.||.|.
T Consensus 153 l~lP~g~~V~~~lTS~D-ViHsf-------~IP~lg-----------------~k~Da---iPGr~n~~~~~~~~~G~y~ 204 (315)
T 1fft_B 153 IAFPANTPVYFKVTSNS-VMNSF-------FIPRLG-----------------SQIYA---MAGMQTRLHLIANEPGTYD 204 (315)
T ss_dssp CCCCSSSEEEEEECBSS-SCEEE-------EEGGGT-----------------EEEEE---CBTSCEEEEEECCSCBCCE
T ss_pred EEEeCCCEEEEEEEeCC-cccee-------eecccC-----------------cEEee---cCCcceeeEEecCCCeEEE
Confidence 45789999999998763 34444 442221 12232 2466678889999999999
Q ss_pred eeecchhhh-hcccEEEEEEe-cC
Q 009127 494 IRSENWARQ-YLGQQFYLRVY-SP 515 (543)
Q Consensus 494 ~HCHil~He-d~GMm~~~~V~-~p 515 (543)
..|--+--. +..|-..++|. ++
T Consensus 205 g~CsE~CG~~Hs~M~~~v~vv~~~ 228 (315)
T 1fft_B 205 GISASYSGPGFSGMKFKAIATPDR 228 (315)
T ss_dssp EBCCSCCSTTTTTCCEECCBCSST
T ss_pred EeccccchhhHHhccceEEEecCH
Confidence 999865544 55677778777 44
No 170
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=23.25 E-value=79 Score=25.33 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred EEEEEeCCCcccceecCCchhhhhccceeEEEEecCCC
Q 009127 113 TYVLQAKDQIGSYFYFPSFLFHKAAGAFGGIRIWSRPR 150 (543)
Q Consensus 113 ~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 150 (543)
...+++ +.+|++||-|-...|=..||...|.|.....
T Consensus 71 ~~~v~L-~~~G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 71 ADSIPL-KRPGTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp EEEEEC-CSSEEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred CEEEEE-CCCcCEEEECCCCCcccCCCEEEEEEcCCCC
No 171
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=21.89 E-value=67 Score=26.11 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=27.3
Q ss_pred EEEecCcccceeeecchhhhhcccEEEE-EEecCC
Q 009127 483 YMALDNVGMWNIRSENWARQYLGQQFYL-RVYSPA 516 (543)
Q Consensus 483 rf~adnpG~w~~HCHil~Hed~GMm~~~-~V~~p~ 516 (543)
.+..+.+|..-|=|=...|=..||-+.+ .|....
T Consensus 73 ~v~l~~~G~~yFic~~~~HC~~Gmkl~In~V~~~~ 107 (116)
T 1x9u_A 73 KIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGG 107 (116)
T ss_dssp EEECCSCEEEEEECCSTTTTTTTCEEEEEEECC--
T ss_pred EEEECCCCCEEEECCCCCccccCCEEEEEEECCCC
Confidence 3556889999999999999999999999 776543
No 172
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus}
Probab=21.48 E-value=45 Score=28.68 Aligned_cols=70 Identities=7% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCCcEEEEEEEeCCCCCCCeeecCCCeEEEe------------ecCCCCCCCCCCC-CCCC-CCCcce--eEEeCCCCEE
Q 009127 417 NFREFVEIVFQNWEDTVQSYHIDGYSFFVVG------------MDGGQWTPASRTR-YNLR-DTVARS--TTQVYPRSWT 480 (543)
Q Consensus 417 ~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~------------~~~g~~~~~~~~~-~~~~-~p~~rD--Tv~vp~~g~v 480 (543)
+.|..+.+.|.+.....|-||+|-.- ..+ +.++.|++..... -... .+-.=| .+.+...|.+
T Consensus 28 ~~gv~v~~~l~GL~pG~hGfHIHe~G--dc~~gc~~g~~~~~~SaGgHfnP~~~~~hg~p~~~~h~GDLgni~~~~~G~a 105 (154)
T 2aqm_A 28 PGGLHFKVNMEKLTPGYHGFHVHENP--SCAPGEKDGKIVPALAAGGHYDPGNTHHHLGPEGDGHMGDLPRLSANADGKV 105 (154)
T ss_dssp TTSEEEEEEECSCCSEEECEEEESSS--CCCCEEETTEEETTGGGCSBCCTTCCCSCCCTTSSSCTTBCCCEEECTTSCE
T ss_pred CCCEEEEEEEECCCCCcceEEEccCC--ccCCccccccccccccccCCCCCcccccCCCCCccCccccccCeEECCCceE
Confidence 34567778888887788999999654 222 2234566543210 0000 001112 4666667888
Q ss_pred EEEEEecC
Q 009127 481 AIYMALDN 488 (543)
Q Consensus 481 ~irf~adn 488 (543)
.+.|..+.
T Consensus 106 ~~~~~~~~ 113 (154)
T 2aqm_A 106 SETVVAPH 113 (154)
T ss_dssp EEEEEETT
T ss_pred EEEEEcCC
Confidence 88777653
No 173
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=21.42 E-value=29 Score=27.36 Aligned_cols=24 Identities=17% Similarity=-0.108 Sum_probs=21.1
Q ss_pred EEEEECCcCCCceEEEecCCEEEE
Q 009127 48 QGILINGQFPGPQIDAVTNDNLII 71 (543)
Q Consensus 48 ~~~~~Ng~~pgP~i~v~~Gd~v~i 71 (543)
...++||+.-.+.-.++.||+|+|
T Consensus 59 ~~V~Vng~~v~~d~~L~dGDRVEI 82 (97)
T 2hj1_A 59 NKIGIFSRPIKLTDVLKEGDRIEI 82 (97)
T ss_dssp SEEEEEECSCCTTCBCCTTCEEEE
T ss_pred cEEEEcCEECCCCccCCCCCEEEE
Confidence 468999998778888999999998
No 174
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=20.99 E-value=32 Score=28.62 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.9
Q ss_pred cceEEEecCCEEEEEEEEcCCc
Q 009127 202 GYTFTVEPGRTYRFRISNVGLT 223 (543)
Q Consensus 202 ~p~~~v~~G~~~rlRiiN~~~~ 223 (543)
.-.++|+.||++||.+.|-+-.
T Consensus 70 ~k~InV~~GETVrF~v~nkt~~ 91 (131)
T 2wtp_A 70 MRYVNVDSGETVAFRAGEKIVA 91 (131)
T ss_dssp CCEEEEETTCEEEEEETTEEEE
T ss_pred CeEEEecCCCEEEEEeCCcEEE
Confidence 3459999999999999886543
No 175
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=20.11 E-value=36 Score=28.30 Aligned_cols=17 Identities=0% Similarity=0.053 Sum_probs=15.8
Q ss_pred eEEEecCCEEEEEEEEC
Q 009127 60 QIDAVTNDNLIISVYNY 76 (543)
Q Consensus 60 ~i~v~~Gd~v~i~~~N~ 76 (543)
-|.|+.|++|++.+.|+
T Consensus 72 ~InV~~GETVrF~v~nk 88 (131)
T 2wtp_A 72 YVNVDSGETVAFRAGEK 88 (131)
T ss_dssp EEEEETTCEEEEEETTE
T ss_pred EEEecCCCEEEEEeCCc
Confidence 49999999999999987
Done!