Query 009128
Match_columns 543
No_of_seqs 293 out of 1316
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 20:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 1E-113 2E-118 894.9 24.7 457 37-500 19-485 (503)
2 PRK00701 manganese transport p 100.0 1.2E-86 2.5E-91 715.3 49.9 430 17-454 4-436 (439)
3 COG1914 MntH Mn2+ and Fe2+ tra 100.0 2.2E-80 4.7E-85 656.8 47.3 406 39-456 9-414 (416)
4 TIGR01197 nramp NRAMP (natural 100.0 3.4E-80 7.4E-85 655.0 43.0 373 44-422 1-390 (390)
5 PF01566 Nramp: Natural resist 100.0 9.3E-68 2E-72 556.4 37.2 356 66-429 1-358 (358)
6 PF03222 Trp_Tyr_perm: Tryptop 98.8 1.8E-05 3.9E-10 85.1 35.3 328 48-399 4-345 (394)
7 TIGR02119 panF sodium/pantothe 98.8 0.00023 5.1E-09 78.1 43.0 116 56-174 51-175 (471)
8 TIGR00813 sss transporter, SSS 98.8 1.8E-05 4E-10 85.0 32.8 119 53-174 11-134 (407)
9 PRK09442 panF sodium/panthothe 98.7 0.00068 1.5E-08 74.7 44.4 115 57-174 53-176 (483)
10 PRK15419 proline:sodium sympor 98.7 0.0003 6.6E-09 77.9 39.9 120 55-175 50-179 (502)
11 PF00474 SSF: Sodium:solute sy 98.7 1.6E-05 3.6E-10 85.1 29.0 114 56-169 17-133 (406)
12 PRK11375 allantoin permease; P 98.6 0.00072 1.6E-08 74.7 40.7 48 78-125 60-107 (484)
13 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.00031 6.6E-09 77.6 37.5 118 57-175 48-175 (487)
14 PRK12488 acetate permease; Pro 98.6 0.00076 1.6E-08 75.7 40.2 121 53-174 75-198 (549)
15 PRK15132 tyrosine transporter 98.6 0.00021 4.6E-09 77.1 34.3 157 48-208 4-169 (403)
16 PRK09395 actP acetate permease 98.6 0.0019 4.1E-08 72.5 41.6 122 53-175 77-201 (551)
17 TIGR02711 symport_actP cation/ 98.5 0.0006 1.3E-08 76.5 36.6 121 53-174 75-198 (549)
18 TIGR00910 2A0307_GadC glutamat 98.4 0.0035 7.5E-08 69.7 39.3 50 74-124 29-83 (507)
19 COG1457 CodB Purine-cytosine p 98.4 0.001 2.2E-08 72.3 33.8 110 79-188 53-162 (442)
20 PRK13629 threonine/serine tran 98.4 0.0025 5.4E-08 69.3 35.7 151 54-208 26-187 (443)
21 PRK15049 L-asparagine permease 98.4 0.0079 1.7E-07 66.7 43.6 39 315-353 292-330 (499)
22 PRK11017 codB cytosine permeas 98.4 0.0067 1.5E-07 65.5 40.4 109 79-188 43-152 (404)
23 PRK11387 S-methylmethionine tr 98.4 0.008 1.7E-07 66.0 45.1 40 314-353 277-316 (471)
24 PRK09664 tryptophan permease T 98.3 0.0033 7.1E-08 68.1 33.3 330 48-401 10-356 (415)
25 PRK10483 tryptophan permease; 98.3 0.0011 2.3E-08 71.8 29.2 149 47-201 11-169 (414)
26 TIGR00800 ncs1 NCS1 nucleoside 98.2 0.0022 4.8E-08 69.9 31.4 58 78-135 47-104 (442)
27 TIGR02358 thia_cytX probable h 98.2 0.011 2.3E-07 63.6 34.8 58 78-135 29-86 (386)
28 TIGR00905 2A0302 transporter, 98.2 0.02 4.4E-07 62.8 41.0 40 314-353 270-309 (473)
29 TIGR03648 Na_symport_lg probab 98.2 0.025 5.5E-07 63.5 43.0 119 53-174 40-163 (552)
30 PRK10249 phenylalanine transpo 98.1 0.025 5.3E-07 62.0 42.3 40 314-353 280-319 (458)
31 COG0591 PutP Na+/proline sympo 98.1 0.03 6.4E-07 62.2 41.6 114 61-174 54-173 (493)
32 PF01235 Na_Ala_symp: Sodium:a 98.1 0.0041 9E-08 67.2 29.2 269 58-357 30-338 (416)
33 TIGR00837 araaP aromatic amino 98.1 0.0072 1.6E-07 64.2 31.0 72 313-385 254-326 (381)
34 PRK10238 aromatic amino acid t 98.1 0.029 6.2E-07 61.5 40.6 120 60-187 33-157 (456)
35 TIGR00908 2A0305 ethanolamine 98.1 0.029 6.3E-07 60.9 38.9 38 86-125 52-89 (442)
36 TIGR00814 stp serine transport 98.1 0.0076 1.6E-07 65.1 30.5 125 81-207 33-170 (397)
37 PRK10484 putative transporter; 98.0 0.042 9.1E-07 61.4 42.1 111 53-163 46-164 (523)
38 PRK11357 frlA putative fructos 98.0 0.043 9.4E-07 59.6 37.3 43 80-124 47-91 (445)
39 PF02133 Transp_cyt_pur: Perme 97.9 0.002 4.3E-08 69.9 23.6 78 57-135 19-99 (440)
40 TIGR00907 2A0304 amino acid pe 97.9 0.041 9E-07 60.4 33.6 39 314-352 291-330 (482)
41 COG3949 Uncharacterized membra 97.9 0.015 3.2E-07 60.6 27.4 139 43-188 6-145 (349)
42 PRK11049 D-alanine/D-serine/gl 97.9 0.071 1.5E-06 58.6 42.6 38 316-353 284-321 (469)
43 TIGR00913 2A0310 amino acid pe 97.9 0.072 1.6E-06 58.4 40.5 30 324-353 287-316 (478)
44 TIGR03810 arg_ornith_anti argi 97.8 0.088 1.9E-06 57.7 41.1 40 314-353 266-305 (468)
45 TIGR01773 GABAperm gamma-amino 97.8 0.089 1.9E-06 57.3 39.5 38 85-124 56-93 (452)
46 PRK11021 putative transporter; 97.7 0.11 2.4E-06 55.8 42.8 39 314-352 248-286 (410)
47 PRK10644 arginine:agmatin anti 97.6 0.17 3.7E-06 55.0 40.9 37 85-123 51-87 (445)
48 TIGR00835 agcS amino acid carr 97.6 0.087 1.9E-06 57.4 28.7 282 57-360 57-368 (425)
49 TIGR00796 livcs branched-chain 97.6 0.17 3.8E-06 54.3 34.8 102 312-422 255-356 (378)
50 TIGR00911 2A0308 L-type amino 97.5 0.22 4.9E-06 55.0 36.3 37 86-124 89-125 (501)
51 COG4147 DhlC Predicted symport 97.5 0.23 4.9E-06 54.3 30.1 228 100-342 97-360 (529)
52 TIGR00909 2A0306 amino acid tr 97.4 0.27 5.8E-06 53.0 35.4 40 315-354 267-306 (429)
53 COG0814 SdaC Amino acid permea 97.3 0.43 9.3E-06 51.9 34.0 155 50-207 12-176 (415)
54 PF13520 AA_permease_2: Amino 97.2 0.41 8.9E-06 51.3 33.4 40 314-353 260-299 (426)
55 PRK10197 gamma-aminobutyrate t 97.2 0.52 1.1E-05 51.5 39.7 38 316-353 255-292 (446)
56 PRK10580 proY putative proline 97.1 0.66 1.4E-05 50.7 42.7 36 87-124 55-90 (457)
57 PRK10435 cadB lysine/cadaverin 97.1 0.65 1.4E-05 50.5 40.9 36 314-349 258-293 (435)
58 PRK10746 putative transport pr 97.1 0.7 1.5E-05 50.8 43.0 39 315-353 272-310 (461)
59 PRK10836 lysine transporter; P 97.0 0.76 1.7E-05 50.7 39.5 38 316-353 286-323 (489)
60 TIGR03428 ureacarb_perm permea 97.0 0.79 1.7E-05 50.4 39.8 45 78-124 51-95 (475)
61 PRK10655 potE putrescine trans 97.0 0.8 1.7E-05 49.6 40.8 40 314-353 260-299 (438)
62 TIGR03813 put_Glu_GABA_T putat 96.8 1.1 2.5E-05 49.1 36.8 64 55-124 11-79 (474)
63 PRK15433 branched-chain amino 96.8 1.2 2.6E-05 48.8 36.2 332 52-420 13-363 (439)
64 PF05525 Branch_AA_trans: Bran 96.7 1.2 2.6E-05 48.6 35.8 326 53-414 9-354 (427)
65 TIGR00930 2a30 K-Cl cotranspor 96.7 2.2 4.9E-05 51.2 39.2 28 326-353 386-413 (953)
66 COG1115 AlsT Na+/alanine sympo 96.6 1.5 3.2E-05 47.9 31.3 269 57-358 73-383 (452)
67 KOG1289 Amino acid transporter 96.6 0.66 1.4E-05 51.6 23.5 132 313-447 326-473 (550)
68 COG1113 AnsP Gamma-aminobutyra 96.5 1.7 3.6E-05 47.6 30.4 116 71-187 39-158 (462)
69 COG0733 Na+-dependent transpor 96.2 2.7 5.8E-05 46.0 35.8 267 53-344 13-322 (439)
70 PF00324 AA_permease: Amino ac 96.1 0.08 1.7E-06 58.1 13.4 38 316-353 278-315 (478)
71 TIGR00906 2A0303 cationic amin 96.0 3.7 8E-05 46.4 37.2 38 316-353 303-340 (557)
72 COG0531 PotE Amino acid transp 95.2 5.5 0.00012 42.9 40.7 39 314-352 274-312 (466)
73 PF00209 SNF: Sodium:neurotran 95.1 1.2 2.7E-05 49.7 18.3 24 323-346 344-367 (523)
74 COG1966 CstA Carbon starvation 95.0 8 0.00017 43.4 36.6 54 71-125 75-132 (575)
75 COG0833 LysP Amino acid transp 94.6 9.5 0.00021 42.8 27.9 123 50-188 60-192 (541)
76 PRK15238 inner membrane transp 94.2 11 0.00024 41.7 42.3 67 54-124 16-87 (496)
77 COG1953 FUI1 Cytosine/uracil/t 94.1 12 0.00026 41.6 27.8 119 79-198 75-213 (497)
78 PF02554 CstA: Carbon starvati 93.4 4 8.7E-05 43.7 16.6 61 64-126 69-133 (376)
79 TIGR00912 2A0309 spore germina 88.3 36 0.00079 35.6 35.4 100 86-195 46-151 (359)
80 COG4145 PanF Na+/panthothenate 87.1 49 0.0011 35.8 33.2 118 55-177 49-177 (473)
81 KOG1286 Amino acid transporter 84.1 82 0.0018 35.8 26.3 32 324-355 315-349 (554)
82 KOG1303 Amino acid transporter 77.1 1.2E+02 0.0027 33.4 29.9 131 107-242 105-247 (437)
83 KOG2349 Na+:iodide/myo-inosito 75.7 1.5E+02 0.0033 33.8 17.6 335 58-414 58-427 (585)
84 COG3949 Uncharacterized membra 75.6 57 0.0012 34.7 13.1 87 316-416 70-157 (349)
85 COG1114 BrnQ Branched-chain am 75.0 1.4E+02 0.0029 32.9 35.8 72 53-125 11-82 (431)
86 PRK09509 fieF ferrous iron eff 72.3 1.2E+02 0.0027 31.2 16.7 89 176-274 73-161 (299)
87 COG1292 BetT Choline-glycine b 72.0 1.8E+02 0.0039 32.9 22.4 68 340-414 417-487 (537)
88 PF03845 Spore_permease: Spore 71.7 1.3E+02 0.0028 31.1 31.3 97 83-186 37-140 (320)
89 PF02028 BCCT: BCCT family tra 56.6 3.3E+02 0.0071 30.5 22.3 81 329-416 393-476 (485)
90 PLN03074 auxin influx permease 51.8 3.8E+02 0.0081 29.8 31.9 46 365-412 350-399 (473)
91 PF05915 DUF872: Eukaryotic pr 49.4 91 0.002 28.0 7.7 33 467-500 78-110 (115)
92 TIGR01297 CDF cation diffusion 48.6 2.9E+02 0.0063 27.5 13.2 16 176-191 52-67 (268)
93 COG4858 Uncharacterized membra 46.3 3E+02 0.0065 27.0 11.8 72 399-472 131-202 (226)
94 KOG1305 Amino acid transporter 41.5 5.1E+02 0.011 28.3 24.3 64 48-121 18-81 (411)
95 PRK03557 zinc transporter ZitB 40.9 4.4E+02 0.0095 27.4 17.7 17 176-192 81-97 (312)
96 PF06570 DUF1129: Protein of u 40.1 3.6E+02 0.0078 26.2 12.7 68 401-472 119-187 (206)
97 COG0053 MMT1 Predicted Co/Zn/C 39.0 2.9E+02 0.0063 28.8 10.8 62 175-242 74-135 (304)
98 PF03222 Trp_Tyr_perm: Tryptop 38.6 5.4E+02 0.012 27.8 21.8 45 314-358 67-111 (394)
99 COG1294 AppB Cytochrome bd-typ 34.0 6.2E+02 0.013 27.1 20.4 25 471-495 315-339 (346)
100 PF12794 MscS_TM: Mechanosensi 32.5 6.3E+02 0.014 26.7 19.0 21 366-386 126-147 (340)
101 KOG2466 Uridine permease/thiam 31.9 8E+02 0.017 27.8 14.6 128 68-198 80-228 (572)
102 PF04165 DUF401: Protein of un 30.1 4E+02 0.0086 28.9 10.3 62 24-95 113-184 (385)
103 PRK15433 branched-chain amino 29.6 8E+02 0.017 27.2 12.6 71 110-183 268-338 (439)
104 COG4721 ABC-type cobalt transp 28.8 4.8E+02 0.01 25.2 9.3 82 121-203 50-141 (192)
105 PRK00968 tetrahydromethanopter 28.0 1.1E+02 0.0024 30.5 5.0 41 327-370 181-221 (240)
106 PF06738 DUF1212: Protein of u 26.9 5.5E+02 0.012 24.3 11.2 9 147-155 116-124 (193)
107 PF01102 Glycophorin_A: Glycop 26.7 82 0.0018 28.6 3.7 18 480-497 78-95 (122)
108 PRK00816 rnfD electron transpo 25.6 4.6E+02 0.01 28.1 9.7 43 44-101 21-63 (350)
109 PRK09928 choline transport pro 24.5 1.2E+03 0.026 27.4 23.9 75 333-414 414-494 (679)
110 PF05525 Branch_AA_trans: Bran 23.0 1E+03 0.023 26.2 14.1 72 109-183 263-335 (427)
111 COG1230 CzcD Co/Zn/Cd efflux s 21.8 9.4E+02 0.02 25.2 15.2 82 176-272 84-167 (296)
112 PRK04125 murein hydrolase regu 21.3 6.7E+02 0.015 23.3 9.2 48 150-198 28-75 (141)
113 COG0814 SdaC Amino acid permea 21.1 1.1E+03 0.023 25.6 15.0 31 314-344 74-104 (415)
114 KOG4583 Membrane-associated ER 20.0 7E+02 0.015 26.7 9.4 56 426-496 258-313 (391)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-113 Score=894.92 Aligned_cols=457 Identities=51% Similarity=0.810 Sum_probs=420.8
Q ss_pred cCCcchHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhh
Q 009128 37 VPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNE 116 (543)
Q Consensus 37 ~~~~~~~r~~l~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~ 116 (543)
.+++++|||+|+|+|||||||+||+||||++||+|+||++||+|||++++++++++++|++++|+|+||||||+|.||++
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 009128 117 YPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF 196 (543)
Q Consensus 117 y~~~~~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F 196 (543)
|||+.|+.+|+++|+|++++|++||+|+|+|+|+|+++|+|+||+||++|+++++++.|||.||+|.++++|+.+|++||
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai~F 178 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAISF 178 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHhhhccccccccCC--CChHHHHHHHhcccchhHHHHHHHHHHhhccCCCCh-hhHHHHHHHHHHHHHH
Q 009128 197 FAELGYAKPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSV-RSIKEACRFYMIESGF 273 (543)
Q Consensus 197 ~~~~~~~~P~~~~v~~G~~iP~~~~--~~~~~~avaliGatimP~nl~lhS~lv~~r~~~~~~-~~vk~a~~~~~~d~~i 273 (543)
.+|+..+||+.+|++.|.|+|++++ .+.+++++|++||+|||||+|+||++||+|+.|++. ++++|+++|+.+|+.+
T Consensus 179 ~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~i 258 (503)
T KOG1291|consen 179 GVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAI 258 (503)
T ss_pred heeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHHHH
Confidence 9999999999999999999999996 346899999999999999999999999999999975 4699999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HhhhccCCC-CC-----CCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhh
Q 009128 274 ALAVAFLINVSVISVS-GAVCSSSNI-NP-----EDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (543)
Q Consensus 274 al~vs~lIn~~iviv~-A~vl~~~g~-~~-----~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t 346 (543)
++.++|.||.+++.++ |..+++... .. .+.++..+.|+.+++.+|++.+|+++.++|++|+++|||||++|||
T Consensus 259 al~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~Ifai~lLasGQSstitgT 338 (503)
T KOG1291|consen 259 ALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYIFAIGLLASGQSSTITGT 338 (503)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhccHHHHHHHHHHHHCCCcccceee
Confidence 9999999999999998 776665421 11 1223345678999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCC
Q 009128 347 YAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHA 426 (543)
Q Consensus 347 ~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~~s~k~iMG~~~ 426 (543)
|+||++||||+|+++++|.||++||++||+|++++++..|.++..++++++|+++|++|||+++|+++|+|+|++||+|+
T Consensus 339 yaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~~~~ 418 (503)
T KOG1291|consen 339 YAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMGVFK 418 (503)
T ss_pred eeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 009128 427 NSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHL 500 (543)
Q Consensus 427 ns~~~~il~wi~~~~i~~lni~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~~ 500 (543)
|+...+..+|....++..+|.|++++ +.....+++.. +...+....+.|+++++||+.++.+.....
T Consensus 419 ~~~~~~~~~~~~~~~~~~in~y~~v~-~~~~~~~~~~~------~~~~~~~~~~~y~~~i~yL~~~~l~~~~~~ 485 (503)
T KOG1291|consen 419 NGLVTEELTWTVAALVLGINGYFLVS-FFWSLVGKHSK------IVVTVNVWTLAYLAFILYLAATCLNAYSII 485 (503)
T ss_pred cCccceeeeehheeeeeeeeeEEeee-ehhhhcCCcee------eehhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999995 44555543322 122344566789999999999986655443
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=1.2e-86 Score=715.31 Aligned_cols=430 Identities=44% Similarity=0.764 Sum_probs=398.8
Q ss_pred CCCCCCCCccccCCCCcccccCCcchHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 009128 17 GNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQS 96 (543)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~ 96 (543)
-+|++.++|++||.+.+.....+++.||++++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~ 83 (439)
T PRK00701 4 LPRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQS 83 (439)
T ss_pred CcccccCCCChhhhcccccCCCcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999888665444445677999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhh
Q 009128 97 LAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQY 176 (543)
Q Consensus 97 laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~y 176 (543)
+++|+|++|||+++|.|||+|||++++++|+.+++++++++++|++|+|+|+|+++|+|.+++++++++++++++++.+.
T Consensus 84 ~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~ 163 (439)
T PRK00701 84 LSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRR 163 (439)
T ss_pred HHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887766777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCHHhhhccccccc---cCCCChHHHHHHHhcccchhHHHHHHHHHHhhccC
Q 009128 177 GVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI 253 (543)
Q Consensus 177 g~rklE~~~~~Lv~im~~~F~~~~~~~~P~~~~v~~G~~iP~---~~~~~~~~~avaliGatimP~nl~lhS~lv~~r~~ 253 (543)
+||++|+++..++++|.+||+++++.++|||+|+++| ++|+ +|+++.+..++|++|+|+||||+|+||+++++|+.
T Consensus 164 ~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~ 242 (439)
T PRK00701 164 GFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVV 242 (439)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 7999999999999999999999999999999999999 8999 88656678899999999999999999999998865
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHH
Q 009128 254 PRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIA 333 (543)
Q Consensus 254 ~~~~~~vk~a~~~~~~d~~ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaig 333 (543)
+++++..++.+|+.++|+.+++.+++++|.++++++|+++|++|.+. ..+.+|+++.|||.+|++++++|++|
T Consensus 243 ~~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~-------~~~~~~~a~~L~p~~G~~a~~lFaiG 315 (439)
T PRK00701 243 GRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTD-------VADIEDAYLLLSPLLGAAAATLFGIA 315 (439)
T ss_pred cCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------cCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555677889999999999999999999999999999999887531 12578899999999999999999999
Q ss_pred HHHHhhHhHhhhhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHH
Q 009128 334 LLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLL 413 (543)
Q Consensus 334 llaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll 413 (543)
+++|||+|++++++++++++|+|++++.++|.|+..+|.++++|++++.++.+..+|.++++++|++++++||++++|++
T Consensus 316 L~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~~~ll 395 (439)
T PRK00701 316 LLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFALIPLL 395 (439)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988999999999999999998877765457899999999999999999999999
Q ss_pred HHhcCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009128 414 KFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSF 454 (543)
Q Consensus 414 ~~~s~k~iMG~~~ns~~~~il~wi~~~~i~~lni~~l~~~~ 454 (543)
+++|||++||+|||+++.|+++|++.++++.+|++++++.+
T Consensus 396 ~l~~~~~imG~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 436 (439)
T PRK00701 396 LFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTF 436 (439)
T ss_pred HHHCCHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765
No 3
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-80 Score=656.84 Aligned_cols=406 Identities=43% Similarity=0.661 Sum_probs=379.4
Q ss_pred CcchHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCC
Q 009128 39 DKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYP 118 (543)
Q Consensus 39 ~~~~~r~~l~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~ 118 (543)
++.+||+.++++|||++|+.+|+||||++|++|+|++|||+|+|++++++++++++|++++|+|++|||+++|.|||+|+
T Consensus 9 ~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~ 88 (416)
T COG1914 9 KRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYL 88 (416)
T ss_pred hHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009128 119 KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (543)
Q Consensus 119 ~~~~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~ 198 (543)
|++.+++|+.+|++++++|++|++|+|+|+|+++|+|+.++++++++++++++..+ |||++|++...++.++.+||.+
T Consensus 89 ~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~i~~~~ 166 (416)
T COG1914 89 PGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLVILFVY 166 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887765 7899999999999999999999
Q ss_pred HHhccCCCHHhhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 009128 199 ELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVA 278 (543)
Q Consensus 199 ~~~~~~P~~~~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~lhS~lv~~r~~~~~~~~vk~a~~~~~~d~~ial~vs 278 (543)
+++..+|+|+++.++.++|+.|..+.++.++|++|||||||++|+||+++++++. ++++.+++.|+.++|+.+++..+
T Consensus 167 ~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~--~~~~~~~~~~~~~~d~~i~~~~a 244 (416)
T COG1914 167 VAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI--KGEENLRALRYSRIDTIIGMIIA 244 (416)
T ss_pred HHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc--cchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988645688999999999999999999999998433 23456677899999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhhhcccC
Q 009128 279 FLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLD 358 (543)
Q Consensus 279 ~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm~gfl~ 358 (543)
.++|.++++++|..+|.++... + +.+++++.+.++|.+|+.+..+|+++++++|++|+++++|++|++|+|+++
T Consensus 245 ~lv~~ail~~aa~~~~~~~~~~-~-----~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~ 318 (416)
T COG1914 245 LLVNLAILIVAAAGFHNSGPNQ-D-----VADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLN 318 (416)
T ss_pred HHHHHHHHHHHHHhhcCCCccc-c-----ccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhc
Confidence 9999999999999998766321 1 246889999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCChHHHHHHHHHH
Q 009128 359 LRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWII 438 (543)
Q Consensus 359 ~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~~s~k~iMG~~~ns~~~~il~wi~ 438 (543)
++.++|.||..||+++++|++.+.+..| ++.++++++|+++++++|++++|++++++||++||+|+|++|.++++|+.
T Consensus 319 ~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v 396 (416)
T COG1914 319 WRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIV 396 (416)
T ss_pred ccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHH
Confidence 9999999999999999999888888887 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009128 439 GSLIMIINVYYLATSFIK 456 (543)
Q Consensus 439 ~~~i~~lni~~l~~~~~~ 456 (543)
.+++..+|++++++.+.+
T Consensus 397 ~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 397 VILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999976543
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=3.4e-80 Score=655.00 Aligned_cols=373 Identities=50% Similarity=0.812 Sum_probs=339.9
Q ss_pred HHHHHhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHH
Q 009128 44 KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (543)
Q Consensus 44 r~~l~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 123 (543)
||+++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++||+++|+|++|||+++|.|||+|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009128 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA 203 (543)
Q Consensus 124 ~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~~~~~ 203 (543)
.+|++++++++++|++|++|+|+|+|+++|+|.|+++++++.+++.++++.+++||++||++..++.+|.+||+++++.+
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~ 160 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYA 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999988888777777788899999999999999999999999999
Q ss_pred CCCHHhhhccccccccCC--CChHHHHHHHhcccchhHHHHHHHHHHhhccCCCChh-hHHHHHHH-------------H
Q 009128 204 KPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVR-SIKEACRF-------------Y 267 (543)
Q Consensus 204 ~P~~~~v~~G~~iP~~~~--~~~~~~avaliGatimP~nl~lhS~lv~~r~~~~~~~-~vk~a~~~-------------~ 267 (543)
+|||+|+++|.++|++|. ++.+..++|++|+|+||||+|+||+++|+|+++++++ ++|+++|| .
T Consensus 161 ~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (390)
T TIGR01197 161 KPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSFS 240 (390)
T ss_pred CCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHHHH
Confidence 999999999988998763 3567899999999999999999999999999877653 45565544 4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhh
Q 009128 268 MIESGFALAVAFL-INVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (543)
Q Consensus 268 ~~d~~ial~vs~l-In~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t 346 (543)
+.|+.++++...+ +|.++++++|+++|+++-. +++.|+.++++.|||.+|++++++|++|+++|||||++|++
T Consensus 241 ~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~------~~~~~~~~~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~ 314 (390)
T TIGR01197 241 INEFVIALFTAALFVNTNILVVAGATLFNSNNN------ADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGT 314 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------cCcCCHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5566666655444 7999999999999864311 12347899999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccc
Q 009128 347 YAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKM 422 (543)
Q Consensus 347 ~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~~s~k~iM 422 (543)
++||++|+||+|++.++|.|++.||.++++|++++..+.|..+|.++++++|++++++||++++|+++++|||++|
T Consensus 315 ~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 315 YSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 9999999999999999999999999999999998888776667999999999999999999999999999999998
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=9.3e-68 Score=556.42 Aligned_cols=356 Identities=40% Similarity=0.630 Sum_probs=328.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHhhhhhHHHHH
Q 009128 66 FETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTA 145 (543)
Q Consensus 66 i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~laii~~di~eviG~A 145 (543)
|+|++|+||+|||+|+|++++++++++++|++++|+|++|||++.|.|||+|||++.+++|+.++++++.++++|++|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCHHhhhccccccccCCCChH
Q 009128 146 FALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGAT 225 (543)
Q Consensus 146 ial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~~~~~~P~~~~v~~G~~iP~~~~~~~~ 225 (543)
+|+++++|+|.+.+++++++++++++++.+.+||++|++++.++.+|.+||+++++.++|||+|+.+|++.|++|+.+.+
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~ 160 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSL 160 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHH
Confidence 99999999999999999999998888866666899999999999999999999999999999999999766999975678
Q ss_pred HHHHHHhcccchhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccc
Q 009128 226 GLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQAS 305 (543)
Q Consensus 226 ~~avaliGatimP~nl~lhS~lv~~r~~~~~~~~vk~a~~~~~~d~~ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~ 305 (543)
..++|++|||+||||+|+||++++||+++.+++..+++.|+.++|+.+++.+++++|.++++++|.++|+++..
T Consensus 161 ~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~------ 234 (358)
T PF01566_consen 161 LFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSE------ 234 (358)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------
Confidence 89999999999999999999999999987743211267888999999999999999999999999999854432
Q ss_pred ccccchHhHHHHHHHhhh-HHHHHHHHHHHHHHhhHhHhhhhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 009128 306 CKDLDLNKASFLLRNVLG-SWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALI 384 (543)
Q Consensus 306 ~~~~~l~~a~~~L~~~lG-~~a~~lfaigllaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~ 384 (543)
..+.+|++++|+|.+| +|++++|++|+++|+|||+++++++++++++++++++.+++.|+..+|...+.|++++.+.
T Consensus 235 --~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (358)
T PF01566_consen 235 --VETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALL 312 (358)
T ss_pred --hhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2368899999999999 8999999999999999999999999999999999999998888888888889998887777
Q ss_pred hCccc-hHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCChH
Q 009128 385 GGSAG-AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSI 429 (543)
Q Consensus 385 ~g~~~-~~~Ll~~aqvi~s~~LPfalipll~~~s~k~iMG~~~ns~ 429 (543)
.+... |.++++++|+++++.+|++++|+++++|||++||+|||+|
T Consensus 313 ~~~~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 313 IGAPGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 66543 4789999999999999999999999999999999999986
No 6
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.85 E-value=1.8e-05 Score=85.11 Aligned_cols=328 Identities=19% Similarity=0.206 Sum_probs=164.0
Q ss_pred HhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc--CCCHHHHHHhhCCCchHHHH
Q 009128 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT--GKHLAEHCRNEYPKVPNFIL 125 (543)
Q Consensus 48 ~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvT--Gk~Lae~~r~~y~~~~~~~l 125 (543)
+.+|=.+++....+|+|=+.-=.++|...=.-.+..++++-++.+.-+.+-+|.-.-+ |.++.+..+|+.||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 4567778888888999988888776555444455566666667777777777777765 88999999999999999887
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHh------hcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009128 126 WVLAEIAIVACDIPEVIGTAFALNML------FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (543)
Q Consensus 126 wi~~~laii~~di~eviG~Aial~lL------fgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~ 199 (543)
|+...+...+...+-+.|.+--+.-+ .++|.+.+.++..+..-.+++. |-|.++|+...++..|.+.|+..
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~---g~~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF---GTKAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 76544333332222222322222222 2456666554443322223333 33566777677777777777766
Q ss_pred HhccCCCHH--hhhccccccccCCCChHHHHHHHhcccch---hHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHH
Q 009128 200 LGYAKPEAK--EVLHGLFVPQLKGNGATGLAISLLGAMVM---PHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFA 274 (543)
Q Consensus 200 ~~~~~P~~~--~v~~G~~iP~~~~~~~~~~avaliGatim---P~nl~lhS~lv~~r~~~~~~~~vk~a~~~~~~d~~ia 274 (543)
....-|+|. .+... .|. + .....+...+--.+. =|+.- +++++. .+++++++|++. .+.+.+.
T Consensus 161 ~~~~~p~~~~~~L~~~--~~~-~--~~~~~~~~~lPv~~~Sf~f~~iv--Psl~~~--~~~d~~k~~~ai---~~Gs~i~ 228 (394)
T PF03222_consen 161 VVYLIPHWNPSNLLDA--PPS-P--SDWSYILPALPVLVFSFGFHNIV--PSLVKY--LGGDPKKIRKAI---IIGSLIP 228 (394)
T ss_pred HHHHhhhcCHHHhhcc--ccc-c--ccHHHHHHHHHHHHHHHHHHhhh--HHHHHH--hCccHHHHHHHH---HHHHHHH
Confidence 665556553 22221 111 1 112222222222222 12211 344432 333334455543 4445444
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhh-HHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 275 LAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLG-SWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 275 l~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG-~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
+++-.+-...+ ++ . +..++.. +.. ....+..+....++...+ ++..++.-+=.+.|-.+|-+..+++-.-..
T Consensus 229 lv~yl~w~~~~--lg-~-l~~~~~~--~~~-~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l 301 (394)
T PF03222_consen 229 LVMYLLWVFSI--LG-S-LPREQFA--EAI-AQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFL 301 (394)
T ss_pred HHHHHHHHHHH--Hh-c-CCHHHHH--HHH-hcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322221111 11 1 1111100 000 001123344455555554 333333333333444455555555433234
Q ss_pred hcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Q 009128 354 QGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASM 399 (543)
Q Consensus 354 ~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqv 399 (543)
++.++++.+++ +|..+..+..+|.++++.+.. ++....+.++..
T Consensus 302 ~d~~k~~~~~~-~r~~~~~ltf~ppl~~a~~~p-~~F~~al~~aG~ 345 (394)
T PF03222_consen 302 ADLFKLKNNSS-GRLKTWLLTFLPPLIFALLFP-NGFLIALGYAGI 345 (394)
T ss_pred HHHHcCCcccc-chHHHHHHHHHhHHHHHHHCc-HHHHHHHHhhcH
Confidence 45555533333 334455667778777766542 345566666653
No 7
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.81 E-value=0.00023 Score=78.05 Aligned_cols=116 Identities=9% Similarity=0.148 Sum_probs=74.5
Q ss_pred HHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHhhhhhhcCCCHHHHHHhhCCCc-hHHHHH
Q 009128 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALI--------IQSLAANLGVVTGKHLAEHCRNEYPKV-PNFILW 126 (543)
Q Consensus 56 va~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~--------~Q~laaRlgvvTGk~Lae~~r~~y~~~-~~~~lw 126 (543)
+.+++++.+........+.++|+...|.......+.++ +....-|. .-.++.|..++||+++ .++...
T Consensus 51 ~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~T~~e~l~~Ryg~~~~~~~~~ 127 (471)
T TIGR02119 51 LVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY---NAITINDVLKARYNNKFLVWLSS 127 (471)
T ss_pred HHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHHHHcCCCchHHHHH
Confidence 34567777777777777888887633332222222222 22222333 3478999999999954 455555
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 127 VLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 127 i~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
+...+..+.....++.|.+..++.++|+|.+.++++.++.+.+....+
T Consensus 128 i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~G 175 (471)
T TIGR02119 128 ISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFG 175 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 555555555566788899999999999999999888776444444443
No 8
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.78 E-value=1.8e-05 Score=84.97 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHhhhhhhcCCCHHHHHHhhCCC-chHHHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC----AALIIQSLAANLGVVTGKHLAEHCRNEYPK-VPNFILWV 127 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i----~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~-~~~~~lwi 127 (543)
|+-+.+.+++.+......+.+.++|+...|..+...+ .++++...--|.+ ..+..|.+++||++ ..+...-+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 3445567888888888899999999888775544332 2333333333444 67889999999998 45554444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 128 ~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
...+..+.....++.|.+..++.++|+|.+.++++.++.+.+....+
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~G 134 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFG 134 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHc
Confidence 44455555666788999999998999999999888776555544444
No 9
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.75 E-value=0.00068 Score=74.75 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=71.8
Q ss_pred HHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHhhhhhhcCCCHHHHHHhhCCCch-HHHHHH
Q 009128 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCA--------ALIIQSLAANLGVVTGKHLAEHCRNEYPKVP-NFILWV 127 (543)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~--------~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~-~~~lwi 127 (543)
.+++++.+......+...++|+...|......+. +..+.+..-|.+ ..+..|..++||++.. ++...+
T Consensus 53 ~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~T~~e~l~~Ryg~~~~~~~~~i 129 (483)
T PRK09442 53 IATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN---AVTLNDMLRARYQSRLLVWLASL 129 (483)
T ss_pred HHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHhCChHHHHHHHH
Confidence 3455666666666677777777755543322222 222233334443 5778999999999754 444333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 128 ~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
...+..+.....++.|.+..++.++|+|.+.++++.++.+.+.-.++
T Consensus 130 ~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~G 176 (483)
T PRK09442 130 SLLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFG 176 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 33444445556778888889999999999999888776544443333
No 10
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.70 E-value=0.0003 Score=77.95 Aligned_cols=120 Identities=9% Similarity=-0.008 Sum_probs=79.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHhhhhhhc-----CCCHHHHHHhhCCCc---hHHH
Q 009128 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL--IIQSLAANLGVVT-----GKHLAEHCRNEYPKV---PNFI 124 (543)
Q Consensus 55 Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~--~~Q~laaRlgvvT-----Gk~Lae~~r~~y~~~---~~~~ 124 (543)
-+.++++....+......+.++|+.-.|..+- ..+++ ....++.|+-.-+ -.+..|..++||++. .+..
T Consensus 50 s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~ 128 (502)
T PRK15419 50 SAGASDMSGWLLMGLPGAVFLSGISESWIAIG-LTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRII 128 (502)
T ss_pred HHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHH
Confidence 34556778888888888888999988786543 33332 2233455655432 257899999999964 3333
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009128 125 LWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (543)
Q Consensus 125 lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~ 175 (543)
..+...+..+.....++.|.+..++.++|+|.+.++++.++.+.+...++.
T Consensus 129 ~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 129 SALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGG 179 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh
Confidence 333333334444456677888888989999999998887766555555553
No 11
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.70 E-value=1.6e-05 Score=85.15 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=83.7
Q ss_pred HHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHhhhhhhcCCCHHHHHHhhCCCch--HHHHHHHHHHH
Q 009128 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII-QSLAANLGVVTGKHLAEHCRNEYPKVP--NFILWVLAEIA 132 (543)
Q Consensus 56 va~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~-Q~laaRlgvvTGk~Lae~~r~~y~~~~--~~~lwi~~~la 132 (543)
+.++.++.+.+....+.+.++|+.-+|..+...+...++ --++.|+=-....+..|.+++||++.. +....+...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 345788999999999999999999998887666655444 346788888888999999999999987 66555555555
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 009128 133 IVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLI 169 (543)
Q Consensus 133 ii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~ 169 (543)
.+.....++.|.+..++.++|+|.+.++++.++.+.+
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~i 133 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVII 133 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHHH
Confidence 5556677888999999999999999888877654433
No 12
>PRK11375 allantoin permease; Provisional
Probab=98.65 E-value=0.00072 Score=74.73 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH
Q 009128 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (543)
Q Consensus 78 y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (543)
++-++.+++++++..++-.+.++.|..+|.+-.-.+|..||++...+.
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~ 107 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFP 107 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHH
Confidence 466888899999999999999999999999999999999998765543
No 13
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.64 E-value=0.00031 Score=77.59 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=72.9
Q ss_pred HHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHH-HH-HHHHHhhhhhhc-----CCCHHHHHHhhCCCchHH---HHH
Q 009128 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAA-LI-IQSLAANLGVVT-----GKHLAEHCRNEYPKVPNF---ILW 126 (543)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~-~~-~Q~laaRlgvvT-----Gk~Lae~~r~~y~~~~~~---~lw 126 (543)
+++++....+........++|+.-.|..+ +..++ ++ .--++.|+-..+ -.+..|.+++||++..+. +.-
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~a 126 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAI-GLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISA 126 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHH
Confidence 44556666666667777788888777754 32222 21 122344444332 246899999999964333 233
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009128 127 VLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (543)
Q Consensus 127 i~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~ 175 (543)
+...+..+.....++.|.+..++.++|+|.+.+++++++.+.+....+.
T Consensus 127 i~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 127 LIILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhh
Confidence 3333333344456777888888888999999998887765555544443
No 14
>PRK12488 acetate permease; Provisional
Probab=98.61 E-value=0.00076 Score=75.69 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=87.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHhhhhhhcCCCHHHHHHhhCC-CchHHHHHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII--QSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~--Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~lwi~~ 129 (543)
|+-+++.++...........+..+|+.-+|..+ +...++++ ..++.|+=-..-.+..|.+.+||+ |..|...-+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 455677788888888888888999999877653 33333332 234444444344789999999998 56777766666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 130 ~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
.+..+.....++.|.+..++.++|+|.+.++++.++.+.+....+
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~G 198 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence 666666777889999999999999999999888776655554444
No 15
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.61 E-value=0.00021 Score=77.07 Aligned_cols=157 Identities=12% Similarity=0.081 Sum_probs=91.1
Q ss_pred HhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHhhhhh--hcCCCHHHHHHhhCCCchHHH
Q 009128 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC-AALIIQSLAANLGV--VTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 48 ~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i-~~~~~Q~laaRlgv--vTGk~Lae~~r~~y~~~~~~~ 124 (543)
+.+|-.++++...+|+|=+.-=.++|...=+-.+-.++++-+ |.+.-.. -+|.-. -.|.++-+..+|.+||.+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 568889999999999999988888776433322222222222 3322222 333222 246889999999999999888
Q ss_pred HHHHHHHHHHHhhh------hhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009128 125 LWVLAEIAIVACDI------PEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (543)
Q Consensus 125 lwi~~~laii~~di------~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~ 198 (543)
.|+...+....... ++++...+.-.+-.++|.+.+.++..+....+++. |.|..+|+..+++..|.++|+.
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~---g~~~v~~~n~~L~~~~ii~~~~ 159 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV---GTSSVDLFNRFLFSAKIIFLVV 159 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 77655443333222 22222222110111456666655544332233333 3467777777777777777776
Q ss_pred HHhccCCCHH
Q 009128 199 ELGYAKPEAK 208 (543)
Q Consensus 199 ~~~~~~P~~~ 208 (543)
.....-|+|.
T Consensus 160 ~~~~l~p~~~ 169 (403)
T PRK15132 160 MLALMMPHIH 169 (403)
T ss_pred HHHHHHHhcC
Confidence 6666667664
No 16
>PRK09395 actP acetate permease; Provisional
Probab=98.56 E-value=0.0019 Score=72.53 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHhhhhhhcCCCHHHHHHhhCC-CchHHHHHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII--QSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~--Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~lwi~~ 129 (543)
|+-+.+.++..+........+..+|+.-.|..+- ..+++++ -.++.|+=-..-.+..|..++||+ |..|...-+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~-~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIG-FLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 3456667788888888888888999987665442 3332221 223555544455789999999998 45777665555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009128 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (543)
Q Consensus 130 ~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~ 175 (543)
.+..+.....+..|.+..++.++|+|.+.++++.++.+.+....+.
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GG 201 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGG 201 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Confidence 5566666678889999999999999999999888776665555553
No 17
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.53 E-value=0.0006 Score=76.48 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=85.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHhhhhhhcCCCHHHHHHhhCC-CchHHHHHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALI--IQSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~--~Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~lwi~~ 129 (543)
|+-+++.+++..........+..+|++-+|..+ +...+++ .-.++.|+--..-.+..|.+++||+ |..|....+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 445566788888888888888899998877553 3333331 1223444444445789999999996 55677655555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 130 ~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
.+..+.....+..|.+..++.++|+|.+.++++.++.+.+....+
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 555556667788999999999999999999888877655555554
No 18
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.44 E-value=0.0035 Score=69.70 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=31.6
Q ss_pred HHhhHHHHHHHHHH-----HHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 74 AQYKYELLWIILVA-----SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 74 A~~Gy~LLWvllla-----~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
|.+|+++....+++ .+.++.+.|++.+..-.+| +...-.|+-+|+++++.
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 46777775444444 3346677777776542233 66677888899877664
No 19
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.44 E-value=0.001 Score=72.29 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHH
Q 009128 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWI 158 (543)
Q Consensus 79 ~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~ 158 (543)
+-++.++++++++.++-...+-.|..||.+=...-|..+|++..++.-++..++.++-..-+++=.+.+.+...++|.|+
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 45789999999999999999999999999999999999999888766566666666644444333333333336789999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009128 159 GVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (543)
Q Consensus 159 gvlit~~~~~~lL~l~~yg~rklE~~~~~L 188 (543)
++++.++.+.+..+++....+++||+...+
T Consensus 133 ~ili~g~l~~l~~ifG~r~l~~l~~~a~~~ 162 (442)
T COG1457 133 GILIIGVLMTLVTIFGYRALHKLERIAVPL 162 (442)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 998877655444444332255666665444
No 20
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.40 E-value=0.0025 Score=69.33 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=100.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc---CCCHHHHHHhhCCCchHHHHHHHHH
Q 009128 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT---GKHLAEHCRNEYPKVPNFILWVLAE 130 (543)
Q Consensus 54 ~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvT---Gk~Lae~~r~~y~~~~~~~lwi~~~ 130 (543)
+......+|+|=+.-=.++|...=+-++-.++++-++++.-.+.-.|.-.-. |.+..+..+|++||.++.+.|+.-.
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 5566688999999999999988777777777777777777777777776654 6899999999999998887765543
Q ss_pred HHHHH---h---hhhhHHHHHHHHHHh-h-cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009128 131 IAIVA---C---DIPEVIGTAFALNML-F-KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY 202 (543)
Q Consensus 131 laii~---~---di~eviG~Aial~lL-f-gipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~~~~ 202 (543)
+.... . .+++.+..-+. |-+ . .+|.+...++..+.-..+. ..|-|.++|+...|+..+.++|+...+.
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl~-~ql~~~~~~r~l~slifv~~l~~iv---~~G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFWE-NQLGFAPLNRGFVALFLLLLMAFVI---WFGKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhcCcCCccHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 1 22222221111 111 1 3465554444332222222 3345889999999999999999888888
Q ss_pred cCCCHH
Q 009128 203 AKPEAK 208 (543)
Q Consensus 203 ~~P~~~ 208 (543)
.-|+|.
T Consensus 182 LiP~w~ 187 (443)
T PRK13629 182 LIPYWN 187 (443)
T ss_pred HHHHcC
Confidence 888885
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=98.38 E-value=0.0079 Score=66.72 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=28.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 315 ~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
.+.++...++++..+..+.++.+.+++..+..++..+++
T Consensus 292 ~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 292 VTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777788888888888888888777776654
No 22
>PRK11017 codB cytosine permease; Provisional
Probab=98.37 E-value=0.0067 Score=65.52 Aligned_cols=109 Identities=12% Similarity=0.108 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhcchhH
Q 009128 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVA-CDIPEVIGTAFALNMLFKIPVW 157 (543)
Q Consensus 79 ~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~laii~-~di~eviG~Aial~lLfgipl~ 157 (543)
+-++.+++++++..++--+.++.|..+|.+-...+|..||++...+.-+.-.+..++ .-++..++ +.+++-++|+|.+
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCCHH
Confidence 557888889999999999999999999999999999999988766554433333333 22333332 3445556788776
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009128 158 IGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (543)
Q Consensus 158 ~gvlit~~~~~~lL~l~~yg~rklE~~~~~L 188 (543)
.+.++..+......+.+..+.+|+|++...+
T Consensus 122 ~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~ 152 (404)
T PRK11017 122 LLIVLSGLLMTVTAYFGISALTILSRIAVPA 152 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655554444444444433456666665443
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.36 E-value=0.008 Score=65.97 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=30.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
..++++...|+++..+..++++.+.+++..++.++..+++
T Consensus 277 ~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 277 FVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455677777888888888888888888887777776654
No 24
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.29 E-value=0.0033 Score=68.10 Aligned_cols=330 Identities=12% Similarity=0.042 Sum_probs=152.4
Q ss_pred HhhhHHHHHHHhhcCCChHHHHH-HHHHHhhHHHHHHHHHHHH---HHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHH
Q 009128 48 AYIGPGFLVSIAYIDPGNFETDL-QSGAQYKYELLWIILVASC---AALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (543)
Q Consensus 48 ~~lGPG~Lva~a~idpGni~t~~-qaGA~~Gy~LLWvllla~i---~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 123 (543)
+.+|=..+++...+|.|=+.--. .+|+-|-++.+-.++.-.. -++.+-|..-|.. .|.++....|+..||.+++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 67898888899999999776432 2333343333322222222 2334666666664 6888999999999999988
Q ss_pred HHHHHHH---HHHHHhh---hhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 009128 124 ILWVLAE---IAIVACD---IPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (543)
Q Consensus 124 ~lwi~~~---laii~~d---i~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~ 197 (543)
+.|+... .+...+. .++++...+.-+.-.++|.+.+.++..+..-.+++.+....++++++ ++..|.++|+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~---l~~~~ii~f~ 164 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSL---FLGLKIISFV 164 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHH---HHHHHHHHHH
Confidence 8776432 2222221 22222221111011146666554444333334444444334555554 4455666666
Q ss_pred HHHhccCC--CHHhhhccccccccCCCC----hHHHHHHHhcccchhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHH
Q 009128 198 AELGYAKP--EAKEVLHGLFVPQLKGNG----ATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIES 271 (543)
Q Consensus 198 ~~~~~~~P--~~~~v~~G~~iP~~~~~~----~~~~avaliGatimP~nl~lhS~lv~~r~~~~~~~~vk~a~~~~~~d~ 271 (543)
......-| ++..+.+. |...+.. ....++.++=+...=|+. =+++++- .+++.+++|++ ..+.+
T Consensus 165 ~~~~~l~~~i~~~~L~~~---~~~~~~~~~~~~i~~alPVl~~SFgfh~i--IPsl~~y--~~~d~~~~~ka---Il~Gs 234 (415)
T PRK09664 165 IVFGSFFFQVDYSILRDA---TSTTAGTSYFPYIFMALPVCLASFGFHGN--IPSLIIC--YGKRKDKLIKS---VVFGS 234 (415)
T ss_pred HHHHHHhhcccHHHHhcC---ccccccchHHHHHHHHHHHHHHhhhCCCc--chHHHHH--hCccHHHHHHH---HHHHH
Confidence 54443333 33333222 2111110 112222222000000110 1333332 22222334444 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHH-HHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhh
Q 009128 272 GFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASF-LLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ 350 (543)
Q Consensus 272 ~ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~-~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~ 350 (543)
.+.+++-++-..+++. ...+++.... .+ ...++.+... ..+..-+++..++..+=.+.|..+|-+..+++-.
T Consensus 235 ~IpLviY~~W~~~ilG----~lp~~~~~~~-~~--~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~ 307 (415)
T PRK09664 235 LLALVIYLFWLYCTMG----NIPRESFKAI-IS--SGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLF 307 (415)
T ss_pred HHHHHHHHHHHHHHhc----CCCHHHHHHH-HH--cCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654444444332 0111110000 00 0012222222 2233344555555554445566667776555533
Q ss_pred hhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Q 009128 351 YVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMIL 401 (543)
Q Consensus 351 ~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~ 401 (543)
-.+.+.++++.++ ..|..+..+..+|-++.+++.- ++...-+.++....
T Consensus 308 D~l~D~~~~~~~~-~~r~~~~~ltflPPl~~al~~P-~gFl~AL~yAG~~~ 356 (415)
T PRK09664 308 DYLADLFKIDNSH-GGRFKTVLLTFLPPALLYLIFP-NGFIYGIGGAGLCA 356 (415)
T ss_pred HHHHHHhCCCCcc-ccceeeehhhHhhhHHHHHHhh-HHHHHHHHHHHHHH
Confidence 3344555544332 3445566777888887776652 34555556665543
No 25
>PRK10483 tryptophan permease; Provisional
Probab=98.27 E-value=0.0011 Score=71.85 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=83.3
Q ss_pred HHhhhHHHHHHHhhcCCChHHHH-HHHHHHhhHHHHHHHHHHHHH---HHHHHHHHhhhhhhcCCCHHHHHHhhCCCchH
Q 009128 47 FAYIGPGFLVSIAYIDPGNFETD-LQSGAQYKYELLWIILVASCA---ALIIQSLAANLGVVTGKHLAEHCRNEYPKVPN 122 (543)
Q Consensus 47 l~~lGPG~Lva~a~idpGni~t~-~qaGA~~Gy~LLWvllla~i~---~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~ 122 (543)
.+.+|=.++++...+|.|=+.-- ..+|+-|.++++-.++.-..| ++.+-|..-|.. -|.++...-|+..||.++
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 56789999999999999987643 233444444443333332222 234666666654 578889999999999988
Q ss_pred HHHHHHHH---HHHHHhh---hhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 009128 123 FILWVLAE---IAIVACD---IPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF 196 (543)
Q Consensus 123 ~~lwi~~~---laii~~d---i~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F 196 (543)
++.|+... -+...+. .++++-.... +.=.++|.+.+.++..+..-.+++.+. |..+|+-.++++.|.+.|
T Consensus 89 ~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~-~~~~~i~~~~~~llF~~~~~~iv~~gt---~~vd~~n~~l~~~~i~~f 164 (414)
T PRK10483 89 VVNGISIAFVLYILTYAYISASGSILHHTFA-EMSLNVPARAAGFGFALLVAFVVWLST---KAVSRMTAIVLGAKVITF 164 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Confidence 87665432 2222221 2222211111 100156888877665544444455444 444555455555566666
Q ss_pred HHHHh
Q 009128 197 FAELG 201 (543)
Q Consensus 197 ~~~~~ 201 (543)
+....
T Consensus 165 ~~~~~ 169 (414)
T PRK10483 165 FLTFG 169 (414)
T ss_pred HHHHH
Confidence 65443
No 26
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.24 E-value=0.0022 Score=69.95 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHH
Q 009128 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVA 135 (543)
Q Consensus 78 y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~laii~ 135 (543)
++-++.+++++++..++--+.++.|..||.+-....|..||++...+.-++-.+..++
T Consensus 47 ~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~ig 104 (442)
T TIGR00800 47 WQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAIG 104 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999988776554444444444
No 27
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.19 E-value=0.011 Score=63.63 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHH
Q 009128 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVA 135 (543)
Q Consensus 78 y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~laii~ 135 (543)
++-+..+++++++...+--+.++.|..||.+-....|..||++...+.-+.-.+..++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~ig 86 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVG 86 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 6778889999999999999999999999999999999999988776554444444444
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.18 E-value=0.02 Score=62.85 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
+.+..+..+|++...+..++.+.+.+++..+...++.++.
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~ 309 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVP 309 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789998888999888888888887777766553
No 29
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.16 E-value=0.025 Score=63.54 Aligned_cols=119 Identities=12% Similarity=0.160 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHH---H-HHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCc-hHHHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILV---A-SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNFILWV 127 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvlll---a-~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~-~~~~lwi 127 (543)
|+-+.++++...........+.++||..+|..+- + .++.+++-..--|.+. .+..|...+||+++ .++...+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 4445667777777777778888888887766531 1 2344555555566665 57899999999854 5665555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 128 ~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
...+..+.....++.|.+..++.++|+|.+.++++.++.+.+....+
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~G 163 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLG 163 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 55555566666778888999999999999999888776555544444
No 30
>PRK10249 phenylalanine transporter; Provisional
Probab=98.13 E-value=0.025 Score=62.00 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=28.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
..+.++...+++...++.+.++.+.+++..+..++..+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l 319 (458)
T PRK10249 280 FVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRML 319 (458)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667787777777788888888777777766654
No 31
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.11 E-value=0.03 Score=62.21 Aligned_cols=114 Identities=13% Similarity=0.173 Sum_probs=76.4
Q ss_pred cCCChHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhhhhhhc----CCCHHHHHHhhCC-CchHHHHHHHHHHHHH
Q 009128 61 IDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVT----GKHLAEHCRNEYP-KVPNFILWVLAEIAIV 134 (543)
Q Consensus 61 idpGni~t~~qaGA~~Gy~LLWvllla~i~~~-~~Q~laaRlgvvT----Gk~Lae~~r~~y~-~~~~~~lwi~~~laii 134 (543)
+.+..+.........+|+.-+|..+...+..+ ..-..+.|+=..+ -.++.|..++||+ +..|...-+...+..+
T Consensus 54 ~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i 133 (493)
T COG0591 54 TSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFI 133 (493)
T ss_pred HHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 33334444444445559999999887643333 4444555555556 6789999999999 6677666555556666
Q ss_pred HhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 135 ACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 135 ~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
.....++.|.+..++..+|+|.+.+..+.+..+.+.-+++
T Consensus 134 ~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~g 173 (493)
T COG0591 134 PYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLG 173 (493)
T ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHc
Confidence 6666778888888888999998887777555444444444
No 32
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.10 E-value=0.0041 Score=67.22 Aligned_cols=269 Identities=16% Similarity=0.166 Sum_probs=144.9
Q ss_pred HhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC---------HHHHHHhhCCCchHHHHHHH
Q 009128 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKH---------LAEHCRNEYPKVPNFILWVL 128 (543)
Q Consensus 58 ~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~---------Lae~~r~~y~~~~~~~lwi~ 128 (543)
++-+|+||++.-..|=+.-|-.-+....++.+++......-.-++...++. ..--+++..++++ .-.++
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~--la~~f 107 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKW--LAILF 107 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccch--HHHHH
Confidence 466999999887777666677666666667777766666666666654432 5555666665433 22222
Q ss_pred HHHHHHHh----hhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--
Q 009128 129 AEIAIVAC----DIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY-- 202 (543)
Q Consensus 129 ~~laii~~----di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~~~~-- 202 (543)
+...+.+. .+.+.-..+.+++--|++|.|...++..+.+.+. .++ |.|++-++...++=+|++.|+...+.
T Consensus 108 ai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~v-i~G--GikrI~~v~~~lVP~Ma~~Yi~~~l~ii 184 (416)
T PF01235_consen 108 AIFLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALV-IFG--GIKRIAKVSEKLVPFMAILYILGGLIII 184 (416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH-HHc--chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111 2222223445556568998776544333322222 222 46788888777777777777655432
Q ss_pred -cCC-----CHHhhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhccCC----------------CChhhH
Q 009128 203 -AKP-----EAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP----------------RSVRSI 260 (543)
Q Consensus 203 -~~P-----~~~~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~lhS~lv~~r~~~----------------~~~~~v 260 (543)
.+. -..+++++.|-|+-- .=|.+|++++--. +.. .+|+.= +.++.+
T Consensus 185 ~~n~~~ip~~~~~If~~AF~~~aa-------~GG~~G~~i~~ai---~~G--v~Rg~fSNEAG~Gsa~~a~a~a~~~hP~ 252 (416)
T PF01235_consen 185 IINIDQIPAAFSLIFSSAFTPKAA-------FGGFAGSTIMMAI---RQG--VARGLFSNEAGLGSAPIAHAAAETDHPV 252 (416)
T ss_pred HhhhhhHHHHHHHHHHHHcCCccc-------hhhHHHHHHHHHH---HHh--hhhhhccCCCCCChhHHHHHHhcCCCcH
Confidence 221 123555665554321 2355666654221 111 123221 112234
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHH
Q 009128 261 KEACR---FYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLAS 337 (543)
Q Consensus 261 k~a~~---~~~~d~~ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaA 337 (543)
||++- --++|+.+ -+-++.+++++++.- + . .++.+ ..+-...+++..+|+|+.++.++.++.-
T Consensus 253 ~QGl~~~~~vFiDTii----VCt~TalvIl~tG~~-~-~---~~~~~-----g~~l~~~Af~~~~g~~g~~~v~i~l~lF 318 (416)
T PF01235_consen 253 RQGLVQMFEVFIDTII----VCTITALVILVTGVW-S-W---GSGLE-----GAALTQAAFSTVLGSWGPYFVAIALFLF 318 (416)
T ss_pred HHeeeeeehHhHHHHH----HHHHHHHHhhccCCC-C-C---CCcch-----HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44421 13344432 222333334433321 0 0 11111 1222346789999999999999999999
Q ss_pred hhHhHhhhhhhhhhhhhccc
Q 009128 338 GQSSTITGTYAGQYVMQGFL 357 (543)
Q Consensus 338 g~sStit~t~ag~~vm~gfl 357 (543)
++||.++..|-++...+=..
T Consensus 319 afTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 319 AFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999998888876665444
No 33
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.10 E-value=0.0072 Score=64.20 Aligned_cols=72 Identities=19% Similarity=0.072 Sum_probs=40.1
Q ss_pred hHHHHHHHhhh-HHHHHHHHHHHHHHhhHhHhhhhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHh
Q 009128 313 KASFLLRNVLG-SWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIG 385 (543)
Q Consensus 313 ~a~~~L~~~lG-~~a~~lfaigllaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~ 385 (543)
...+.++..+| ++...+..++...|..+|.+..+++-.-..++.++++.++ .+|+....++.+|.++++.+.
T Consensus 254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHh
Confidence 34445655565 3567777777777777887766665432344434332222 223344455566767666554
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.09 E-value=0.029 Score=61.46 Aligned_cols=120 Identities=13% Similarity=0.268 Sum_probs=57.3
Q ss_pred hcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH-HHHHHHHHHHhhh
Q 009128 60 YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL-WVLAEIAIVACDI 138 (543)
Q Consensus 60 ~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l-wi~~~laii~~di 138 (543)
++.||...++.-.++-++| +..-+......+-+-|++.|+=. +| +..+-.++.|++...+.. |.. .++.+....
T Consensus 33 f~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~g~~~gf~~Gw~~-~~~~~~~~~ 107 (456)
T PRK10238 33 FLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYWGSFAGFASGWNY-WVLYVLVAM 107 (456)
T ss_pred HHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHcCcHHHHHHHHHH-HHHHHHHHH
Confidence 3666666654322333332 22222334445556677777765 34 566677788998766543 322 112222223
Q ss_pred hhHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHH
Q 009128 139 PEVIGTAFALNMLF-KIPVWIGVLLTGFSTLILLALQQYG---VRKLEFLIAF 187 (543)
Q Consensus 139 ~eviG~Aial~lLf-gipl~~gvlit~~~~~~lL~l~~yg---~rklE~~~~~ 187 (543)
.|..+.+.-++..+ +.|.|...++..+ ++..++-.| +.++|.++..
T Consensus 108 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~---~~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 108 AELTAVGKYIQFWYPEIPTWVSAAVFFV---VINAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHH
Confidence 44433333344444 3566655443322 122222223 4577776543
No 35
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.07 E-value=0.029 Score=60.88 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH
Q 009128 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (543)
Q Consensus 86 la~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (543)
.....++.+-|++.|+-.. | +...-.++.+|+...+..
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHHH
Confidence 3455667799999998753 3 456677889999776543
No 36
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.07 E-value=0.0076 Score=65.08 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hhhhc-CCCHHHHHHhhCCCchHHHHHHHHHHHHH------HhhhhhHHHHHHH
Q 009128 81 LWIILVASCAALIIQSLAAN------LGVVT-GKHLAEHCRNEYPKVPNFILWVLAEIAIV------ACDIPEVIGTAFA 147 (543)
Q Consensus 81 LWvllla~i~~~~~Q~laaR------lgvvT-Gk~Lae~~r~~y~~~~~~~lwi~~~laii------~~di~eviG~Aia 147 (543)
.|..+++.+..+++....+| +.--. |+++.|..++.+||+++...++.-.+... +..+.+..+.-+.
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~ 112 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLV 112 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556655555555555 34444 78999999999999887765443222211 1122222222211
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCH
Q 009128 148 LNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEA 207 (543)
Q Consensus 148 l~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~~~~~~P~~ 207 (543)
-.+....|.++.. ..+...++.+.-+.|.|.+.|+..+++..+.+.++...+..-|+|
T Consensus 113 ~~~~~~~p~~~i~--~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 113 NQLGTAPPLRGLL--SLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HhcCCCCcHHHHH--HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1122334444211 111222323344557777888777766556555555554444544
No 37
>PRK10484 putative transporter; Provisional
Probab=98.04 E-value=0.042 Score=61.36 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~-~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~l 131 (543)
|+=+.++++..++.......+.++|+..+|..+...+... ..--.+.|+--.-=.+..|..++||++..+...-....+
T Consensus 46 ~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i 125 (523)
T PRK10484 46 AGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLI 125 (523)
T ss_pred HHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHH
Confidence 3344556788888888888888888776532222221111 111224443322235789999999998766543332222
Q ss_pred HHHHhhhhh-HHHHHHHHHH------hhcchhHHHHHHH
Q 009128 132 AIVACDIPE-VIGTAFALNM------LFKIPVWIGVLLT 163 (543)
Q Consensus 132 aii~~di~e-viG~Aial~l------Lfgipl~~gvlit 163 (543)
..+...++. ..+.+.+++- ++|+|.+.++.++
T Consensus 126 ~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 126 GYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 222222222 2233444432 4688877665543
No 38
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.98 E-value=0.043 Score=59.63 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHHHH--HHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 80 LLWII--LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 80 LLWvl--lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
+.|++ ++....++.+-|++.++=.. | +.-.-.++.||+...+.
T Consensus 47 l~~li~~v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 47 LAFVIGGLIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 34544 45667778888888887653 3 22345677788876544
No 39
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.94 E-value=0.002 Score=69.94 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=52.0
Q ss_pred HHhhcCCChHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHH
Q 009128 57 SIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAI 133 (543)
Q Consensus 57 a~a~idpGni~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~lai 133 (543)
..+.+-+.++.+-... ..+| ++-+..+++++++..++-...++.|..||.+-....|..||.+.+.+.-+...+..
T Consensus 19 ~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~ 97 (440)
T PF02133_consen 19 FGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISA 97 (440)
T ss_dssp CHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHH
Confidence 3344455555555544 4455 45678888999999999999999999999999999999999887766544433444
Q ss_pred HH
Q 009128 134 VA 135 (543)
Q Consensus 134 i~ 135 (543)
++
T Consensus 98 ig 99 (440)
T PF02133_consen 98 IG 99 (440)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 40
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.92 E-value=0.041 Score=60.42 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=25.5
Q ss_pred HHHHHHHhhhH-HHHHHHHHHHHHHhhHhHhhhhhhhhhh
Q 009128 314 ASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYV 352 (543)
Q Consensus 314 a~~~L~~~lG~-~a~~lfaigllaAg~sStit~t~ag~~v 352 (543)
..+.+...+|. ++..++.+.++.+.+++..+..++..+.
T Consensus 291 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 330 (482)
T TIGR00907 291 IAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRM 330 (482)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666776 6666666777777777777666665554
No 41
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.90 E-value=0.015 Score=60.63 Aligned_cols=139 Identities=18% Similarity=0.247 Sum_probs=90.2
Q ss_pred HHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-cCCCHHHHHHhhCCCch
Q 009128 43 WKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVP 121 (543)
Q Consensus 43 ~r~~l~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~ 121 (543)
.|..++++| -++.+++--.=++- |-=..||+.=.|-+.+++++-.+.-.....+|-. .-+|..|..+.-.++++
T Consensus 6 ~~~~f~~ig--~~vGAGfAsGqEi~---QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 6 MRWAFAFIG--TVVGAGFASGQEIM---QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHH--HhhcccccchHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHH
Confidence 344556666 44444443333333 3334588888888888888877776666666665 45677777777777766
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009128 122 NFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (543)
Q Consensus 122 ~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~L 188 (543)
....=++..+..+.+..-...|++..++--+|+|.|+|.++......+.++++| .++++++.+..
T Consensus 81 ~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~--vegi~tvn~iI 145 (349)
T COG3949 81 AKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGR--VEGIITVNGII 145 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhc--ccceeeeheeH
Confidence 555444444445555555566777667778999999997777666666666665 57777765443
No 42
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.87 E-value=0.071 Score=58.55 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=23.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 316 ~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
+.++...+++...++.+.++.+.+++..+..++..+++
T Consensus 284 ~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 284 ELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666667777777777777666666655553
No 43
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.87 E-value=0.072 Score=58.41 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 324 SWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 324 ~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
++...++.++++.+.+++..+..++..++.
T Consensus 287 ~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 316 (478)
T TIGR00913 287 KVLPHIFNAVILISVLSAANSSLYASSRTL 316 (478)
T ss_pred chHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 677778888888888888777777766654
No 44
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.81 E-value=0.088 Score=57.75 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=32.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
....++..+|+|+..++.++++.+.+++..+.++++.++.
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~ 305 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIP 305 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788899999999999999999999888888776554
No 45
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.80 E-value=0.089 Score=57.33 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 85 lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
++....++.+-|++.|+-.. -+..+..++.+|+...+.
T Consensus 56 v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~~g~~~gf~ 93 (452)
T TIGR01773 56 LLVVFIMRMLGEMAVANPDT--GSFSTYADDAIGRWAGFT 93 (452)
T ss_pred HHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHhCcHHHHH
Confidence 44456777788888877542 256788889999977654
No 46
>PRK11021 putative transporter; Provisional
Probab=97.70 E-value=0.11 Score=55.82 Aligned_cols=39 Identities=8% Similarity=-0.025 Sum_probs=28.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 352 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~v 352 (543)
..+.++..+|+++..++.+..+.+.+++..+..++..++
T Consensus 248 ~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~ 286 (410)
T PRK11021 248 LPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARL 286 (410)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888988888888877778788877666665554
No 47
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.59 E-value=0.17 Score=55.03 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHH
Q 009128 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (543)
Q Consensus 85 lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 123 (543)
+.+.+..+.+-|++.++=. +| +..+-.|+.||+...+
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf 87 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGY 87 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHH
Confidence 5566777888888888753 34 5666788899998764
No 48
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.58 E-value=0.087 Score=57.36 Aligned_cols=282 Identities=16% Similarity=0.153 Sum_probs=128.9
Q ss_pred HHhhcCCChHHHHHHHHHHhhHHH-HHHH---HHHHHHHHHHHHHHhhhhhhcCCC-H----HHHHHhhCC-CchHHHHH
Q 009128 57 SIAYIDPGNFETDLQSGAQYKYEL-LWII---LVASCAALIIQSLAANLGVVTGKH-L----AEHCRNEYP-KVPNFILW 126 (543)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~L-LWvl---lla~i~~~~~Q~laaRlgvvTGk~-L----ae~~r~~y~-~~~~~~lw 126 (543)
.++-+|.||+..-..|=+.-|..- .|.- +++...++.--.++-|+-...+++ . ..-+++..+ |+...++-
T Consensus 57 la~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa 136 (425)
T TIGR00835 57 LAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFA 136 (425)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHH
Confidence 346678887777666633333333 3322 233444455555555655433333 2 233444443 44333322
Q ss_pred HHHHHHHHH-hhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---
Q 009128 127 VLAEIAIVA-CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY--- 202 (543)
Q Consensus 127 i~~~laii~-~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~~~~--- 202 (543)
+. .++..+ ...-+.-..+-.++--+++|.|...++..+.+... ..+ |.|++-++...++-.|++.|+...+.
T Consensus 137 ~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~v-i~G--Gik~Ia~v~~~lvP~m~~~Y~~~~l~ii~ 212 (425)
T TIGR00835 137 VF-LIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALI-IFG--GLKRIAKISSVVVPFMALLYVIMALYIII 212 (425)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-Hhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 111111 01111111222333345888876544433322222 222 56778777777766766666432221
Q ss_pred -----cCCCHHhhhccccccccCCCChHHHHHHHhcccchhHHHH-HHHHHH-hhccC---------CCChhhHHHHHHH
Q 009128 203 -----AKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLF-LHSALV-LSRKI---------PRSVRSIKEACRF 266 (543)
Q Consensus 203 -----~~P~~~~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~-lhS~lv-~~r~~---------~~~~~~vk~a~~~ 266 (543)
..|-...++++.|-|+- .+=|.+|++++--.-+ ..-++- .|-|. .+.++.+||.+-
T Consensus 213 ~n~~~lp~~~~~If~~AF~~~a-------~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~- 284 (425)
T TIGR00835 213 MNIEQLPAVISLIFRSAFGGDA-------AAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLV- 284 (425)
T ss_pred HhHHHHHHHHHHHHHHhCCchh-------hHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHHH-
Confidence 12334455565554431 1234555544321111 000000 01111 111233555432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhh
Q 009128 267 YMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (543)
Q Consensus 267 ~~~d~~ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t 346 (543)
..+|..+--++.+-++.+++++.+. +.+ +++.+ ...+.+ .+++..+|.|+.++.++.++.-++||.++..
T Consensus 285 ~~~~vfiDTivvCt~Talvil~tg~--~~~---~~~~~---g~~lt~--~af~~~~g~~g~~~v~i~~~lFaftTii~~~ 354 (425)
T TIGR00835 285 QMLGVFIDTMIVCTATALVILLSGV--WNN---GEGLS---GAQLTQ--QALSYGLGSFGAVFVAVALFLFAFSTIIGWY 354 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCc--cCC---CCCCc---HHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2223222212222334444444332 110 01111 112333 5688889999999999999999999999988
Q ss_pred hhhhhhhhcccCCc
Q 009128 347 YAGQYVMQGFLDLR 360 (543)
Q Consensus 347 ~ag~~vm~gfl~~~ 360 (543)
|-++...+=..+.|
T Consensus 355 yyge~~~~yl~~~~ 368 (425)
T TIGR00835 355 YYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHhcCCC
Confidence 88776654433434
No 49
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.56 E-value=0.17 Score=54.32 Aligned_cols=102 Identities=21% Similarity=0.146 Sum_probs=60.3
Q ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchH
Q 009128 312 NKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAG 391 (543)
Q Consensus 312 ~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~ 391 (543)
+-+.+.-+..+|+++..+.++..+.|.+++.+.-+.+...-.+.... |..++...... .+.+.++. .. +.+
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~----k~~y~~~v~~~-~l~s~~ia-~~---Gl~ 325 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP----KLSYKTWVIVF-TLFSFIVA-NL---GLT 325 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHH-HHHHHHHH-Hh---CHH
Confidence 33556778899999999999999999999987654443222222211 12222111111 12222222 22 467
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCcccc
Q 009128 392 QLIIIASMILSFELPFALVPLLKFTSSKVKM 422 (543)
Q Consensus 392 ~Ll~~aqvi~s~~LPfalipll~~~s~k~iM 422 (543)
+++.++.=+..+.-|.+....+.-.-+|+..
T Consensus 326 ~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~ 356 (378)
T TIGR00796 326 QIISISIPVLMIIYPLAIVLILLSFLRKLWD 356 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888777788888898877766522244443
No 50
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.54 E-value=0.22 Score=55.03 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 86 la~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
++...++.+-|++.++-. +| +.-.-.++.||+...+.
T Consensus 89 ~~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 89 FSIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 345556677777777653 33 45666778899876654
No 51
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.50 E-value=0.23 Score=54.34 Aligned_cols=228 Identities=18% Similarity=0.266 Sum_probs=115.3
Q ss_pred hhhhhcCCCHHHHHHhhCC-CchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 009128 100 NLGVVTGKHLAEHCRNEYP-KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGV 178 (543)
Q Consensus 100 RlgvvTGk~Lae~~r~~y~-~~~~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~ 178 (543)
|+==.-+-+.+|.+.+||. ++.|++.-+...+......++++.|++.-+..++|+|-..++.+..+...+...++ |.
T Consensus 97 ~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~G--GM 174 (529)
T COG4147 97 YLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLG--GM 174 (529)
T ss_pred HHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhc--ch
Confidence 3333344566899988885 45666655555555555678999999999999999999988887665443333333 22
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHH----hccCCCHHhhhcccccccc--------CC---CC---hHHHHHH-Hhcccch
Q 009128 179 RKLE--FLIAFLVFTMAGCFFAEL----GYAKPEAKEVLHGLFVPQL--------KG---NG---ATGLAIS-LLGAMVM 237 (543)
Q Consensus 179 rklE--~~~~~Lv~im~~~F~~~~----~~~~P~~~~v~~G~~iP~~--------~~---~~---~~~~ava-liGatim 237 (543)
+... .++...+.+.+..+...+ +-.+|.... ..+...+.. |+ .. .+....+ ++|+.=+
T Consensus 175 ~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgL 253 (529)
T COG4147 175 KATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLF-AEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGL 253 (529)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH-HHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCC
Confidence 2111 222222222222222222 122332211 111112211 11 11 1222233 4588889
Q ss_pred hHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-----------Ccccc
Q 009128 238 PHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPE-----------DQASC 306 (543)
Q Consensus 238 P~nl~lhS~lv~~r~~~~~~~~vk~a~~~~~~d~~ial~vs~lIn~~iviv~A~vl~~~g~~~~-----------~~~~~ 306 (543)
||.+- |-.... ++|||.|-..+- ...+..+=+...++..+|..+-.++.... |.+..
T Consensus 254 PHil~--------RFfTvp--~~k~AR~Sv~wA--~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~ 321 (529)
T COG4147 254 PHILM--------RFFTVP--DAKEARKSVFWA--TGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGD 321 (529)
T ss_pred CeEEE--------EEEecC--cHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccccccccccc
Confidence 99653 444332 356664422111 11122223344445555554444333221 22111
Q ss_pred cccch-HhHHHHHHHhhh--HHHHHHHHHHHHHHhhHhH
Q 009128 307 KDLDL-NKASFLLRNVLG--SWSSKLFAIALLASGQSST 342 (543)
Q Consensus 307 ~~~~l-~~a~~~L~~~lG--~~a~~lfaigllaAg~sSt 342 (543)
....- +++..++.|..| +|-..+.+.|.||+..|+.
T Consensus 322 gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLsta 360 (529)
T COG4147 322 GIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTA 360 (529)
T ss_pred ccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHH
Confidence 11122 567777888887 6777777888888887764
No 52
>TIGR00909 2A0306 amino acid transporter.
Probab=97.42 E-value=0.27 Score=52.98 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=30.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhhh
Q 009128 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQ 354 (543)
Q Consensus 315 ~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm~ 354 (543)
....+...|++...+..++...+.+++..+..++..+...
T Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 267 SLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888899988888888887777766543
No 53
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.26 E-value=0.43 Score=51.89 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=81.4
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC---CHHHHHHhhCCCchHHHHH
Q 009128 50 IGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGK---HLAEHCRNEYPKVPNFILW 126 (543)
Q Consensus 50 lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk---~Lae~~r~~y~~~~~~~lw 126 (543)
.|=-++++-..+|.|=+.-=.+++-..=+-.+-.++++-++.+.-+++-.|.-.-+++ +..+..++++|+.+++...
T Consensus 12 ~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~ 91 (415)
T COG0814 12 LGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIG 91 (415)
T ss_pred HHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHH
Confidence 4444556667788887776665543222222223344556666677777776666554 7899999999999998876
Q ss_pred HHHHHHHHHhhh------hhHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009128 127 VLAEIAIVACDI------PEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (543)
Q Consensus 127 i~~~laii~~di------~eviG~Aial~lLfg-ipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~ 199 (543)
+...+...+... ++.+-.-+.-..... .+...+.++.......+.+.++....|.+ ..++..+.+.++..
T Consensus 92 ~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~t---s~l~~~~v~~~~~l 168 (415)
T COG0814 92 LSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKIT---SLLVFGKVIYLVLL 168 (415)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHH---HHHHHHHHHHHHHH
Confidence 555444333222 221111111001112 45555544443333334455543334444 44444555555555
Q ss_pred HhccCCCH
Q 009128 200 LGYAKPEA 207 (543)
Q Consensus 200 ~~~~~P~~ 207 (543)
.+.--|.|
T Consensus 169 ~~~~~~~~ 176 (415)
T COG0814 169 VVYLIPHW 176 (415)
T ss_pred HHHHhccc
Confidence 55555555
No 54
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.24 E-value=0.41 Score=51.34 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
.....+...|++...++.+++..+.+++..+...+..+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 299 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLL 299 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcc
Confidence 3445555666899999999999999998888777766553
No 55
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.19 E-value=0.52 Score=51.49 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 316 ~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
..++..-++++..+..++++.+.+++..+..+++.+++
T Consensus 255 ~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l 292 (446)
T PRK10197 255 SVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRML 292 (446)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777776667766554
No 56
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.08 E-value=0.66 Score=50.72 Aligned_cols=36 Identities=6% Similarity=0.114 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 87 ASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 87 a~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
.....+.+.|++.|+-.. -+..+-.++.+|+...+.
T Consensus 55 ~~~~a~~~aEl~s~~P~~--Gg~y~y~~~~~G~~~gf~ 90 (457)
T PRK10580 55 AYIIMRALGEMSVHNPAA--SSFSRYAQENLGPLAGYI 90 (457)
T ss_pred HHHHHHHHHHHHHHcCCC--CCHHHHHHHHcCcHHHHH
Confidence 344456677888776542 245566788899876654
No 57
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.07 E-value=0.65 Score=50.48 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=25.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAG 349 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag 349 (543)
....++...|+++..+..++++.+.+++..+..+..
T Consensus 258 ~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~ 293 (435)
T PRK10435 258 FAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLV 293 (435)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888999888888776667777665554443
No 58
>PRK10746 putative transport protein YifK; Provisional
Probab=97.06 E-value=0.7 Score=50.75 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 315 ~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
...++..-.+.+..+..+..+.+.+|+..+..+++.+.+
T Consensus 272 v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l 310 (461)
T PRK10746 272 VLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRML 310 (461)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334554434555556666666777777777777776654
No 59
>PRK10836 lysine transporter; Provisional
Probab=97.04 E-value=0.76 Score=50.75 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 316 ~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
..+++.-++++..++.+.++.+.+++..+..+++.++.
T Consensus 286 ~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l 323 (489)
T PRK10836 286 LVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRML 323 (489)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444566777777777777888777777776654
No 60
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.01 E-value=0.79 Score=50.40 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 78 y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
|..+...+.....++.+-|++.|+=. +| +.-.-.++.+|+...+.
T Consensus 51 ~~~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 51 WTWPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 33444455556677778888888763 33 44566677788866544
No 61
>PRK10655 potE putrescine transporter; Provisional
Probab=96.95 E-value=0.8 Score=49.63 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=26.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
.++.++..+|++...+..++.+.+.+++..+..+++.+++
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~ 299 (438)
T PRK10655 260 FGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVF 299 (438)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888887666666666666666665555555543
No 62
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.80 E-value=1.1 Score=49.11 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=35.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVAS-----CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 55 Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~-----i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
+..++-++-.|+.+. |.+|.+.+...+++. +.++.+-|++.++-. +| +..+-.|+.+|+.+.+.
T Consensus 11 ~~~~~v~~~~~~~~~----a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 11 MNITAVVSLRGLPAE----AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 333344444555433 455565543333322 355566777776644 23 55677888899876553
No 63
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.76 E-value=1.2 Score=48.80 Aligned_cols=332 Identities=15% Similarity=0.162 Sum_probs=153.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHH
Q 009128 52 PGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (543)
Q Consensus 52 PG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~l 131 (543)
=|+..=+-+.|+||+.-=..-|.+.|-+..+..+--.+-+..+=-++.=-...+|.+..+.- ++-+|+....+....-+
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~-~rv~~~f~~~f~~~i~l 91 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLS-TPIGKVAGVLLATVCYL 91 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-hhcchHHHHHHHHHHHH
Confidence 37777788999999999988888888888777766656555555554444444554555544 44566666655554444
Q ss_pred HHHHh-hhhhHHHHHHHHHH----hhc---chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHH-HHHHHHHHHHHHHHh
Q 009128 132 AIVAC-DIPEVIGTAFALNM----LFK---IPVWIGVLLTGFSTLILLALQQYG-VRKLEFLIA-FLVFTMAGCFFAELG 201 (543)
Q Consensus 132 aii~~-di~eviG~Aial~l----Lfg---ipl~~gvlit~~~~~~lL~l~~yg-~rklE~~~~-~Lv~im~~~F~~~~~ 201 (543)
++--. -++-- ++...++ +++ ++++.-.++....++. +-++... .+++-|++. +++..+.+.++..
T Consensus 92 ~IGP~~aiPRt--aavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~-l~l~p~klvd~iGK~LTP~LL~~l~~lii~~-- 166 (439)
T PRK15433 92 AVGPLFATPRT--ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVIL-VSLYPGKLLDTVGNFLAPLKIIALVILSVAA-- 166 (439)
T ss_pred HHhhccccCCc--cccchhheeeccCCcccHHHHHHHHHHHHHHHH-HHcChhhHHHHhHHHHHHHHHHHHHHHHHHH--
Confidence 33211 11110 1111221 222 2332222221111211 1122211 455555543 2222222222222
Q ss_pred ccCCCHHhh--hcccc--ccccCC--CCh-HHHHHHH--hcccchhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHH
Q 009128 202 YAKPEAKEV--LHGLF--VPQLKG--NGA-TGLAISL--LGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESG 272 (543)
Q Consensus 202 ~~~P~~~~v--~~G~~--iP~~~~--~~~-~~~aval--iGatimP~nl~lhS~lv~~r~~~~~~~~vk~a~~~~~~d~~ 272 (543)
..+|. ++. ..+.. -|-..+ +|+ .+.++|- +|.++ .++ .++||.++++ +-.|+...-..
T Consensus 167 i~~p~-g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~ii------i~~--i~~~G~~~~~----~~~k~t~~ag~ 233 (439)
T PRK15433 167 IVWPA-GSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVI------VNA--ARSRGVTEAR----LLTRYTVWAGL 233 (439)
T ss_pred HhcCC-CCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH------HHH--HHHcCCCCHH----HHHHHHHHHHH
Confidence 22331 110 00000 010000 121 2333332 23322 121 3667765432 22232333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhh
Q 009128 273 FALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 352 (543)
Q Consensus 273 ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~v 352 (543)
++-..-.++=....-++|..- +... +.++ ..+=.....+..+|+++..++++.++.|.+++.+..+++...-
T Consensus 234 ia~~~L~~vY~gL~~lGa~s~--~~~~--~~~~----g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 234 MAGVGLTLLYLALFRLGSDSA--SLVD--QSAN----GAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCc--cccc--CCCc----HhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344454321 1111 1100 1122344568899999999999999999999999888875433
Q ss_pred hhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcc
Q 009128 353 MQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKV 420 (543)
Q Consensus 353 m~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~~s~k~ 420 (543)
++...+.+ .|.+. .+..+.+..+.- -+..+++.++-=++.+.=|.+....+.---+|.
T Consensus 306 f~~~~~is----Y~~~v--~i~~l~S~~lSn----~G~~~II~~s~PiL~~iYP~~IvLill~l~~~~ 363 (439)
T PRK15433 306 FAQYVPLS----YRTLV--FILGGFSMVVSN----LGLSQLIQISVPVLTAIYPPCIALVVLSFTRSW 363 (439)
T ss_pred HHhhcCCc----HHHHH--HHHHHHHHHHHH----hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33332211 11111 111112222222 245677777666777788887666554333443
No 64
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.75 E-value=1.2 Score=48.64 Aligned_cols=326 Identities=18% Similarity=0.221 Sum_probs=157.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-cCCCHHHHHHhhCCCchHHHHHHHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFILWVLAEI 131 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~~~~lwi~~~l 131 (543)
|+..=+-+.|+||+.-=..-|.+.|-+..|..+--.+-+..+=-++ .+.+. +|.+..+.- ++-+|+....+.+..-+
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg-via~~~~~~~~~~l~-~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG-VIAVAKSGGGIEDLA-SRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHh-cccCcHHHHHHHHHHHH
Confidence 4555567899999999999999999888887766666555555444 44444 555655544 44566666665555444
Q ss_pred HHHHh-hhhhHHHH--HHHHHHhhc----chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHH-HHHHHHHHHHHHHHhc
Q 009128 132 AIVAC-DIPEVIGT--AFALNMLFK----IPVWIGVLLTGFSTLILLALQQYG-VRKLEFLIA-FLVFTMAGCFFAELGY 202 (543)
Q Consensus 132 aii~~-di~eviG~--Aial~lLfg----ipl~~gvlit~~~~~~lL~l~~yg-~rklE~~~~-~Lv~im~~~F~~~~~~ 202 (543)
++--. -++--.-+ .++..-+++ ++++.-.++....++.+- +++-. .|++-|++. +|+..+.+-++ ...
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~-~~p~kivd~iGk~LTP~LL~~l~ilii--~~i 163 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLS-LNPSKIVDRIGKFLTPILLILLAILII--KGI 163 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 33211 12211111 112222334 334333333222222222 22211 455555543 12222222222 222
Q ss_pred cCCCH--HhhhccccccccC---C--CCh-HHHHHHH--hcccchhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHH
Q 009128 203 AKPEA--KEVLHGLFVPQLK---G--NGA-TGLAISL--LGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESG 272 (543)
Q Consensus 203 ~~P~~--~~v~~G~~iP~~~---~--~~~-~~~aval--iGatimP~nl~lhS~lv~~r~~~~~~~~vk~a~~~~~~d~~ 272 (543)
.+|.- .+. ++. .++-| + +|. .+.++|- +|.++ .+ -.++|+.+++ ||-.|+...-..
T Consensus 164 ~~p~g~~~~~-~~~-y~~~~f~~Gf~eGY~TMD~laal~Fg~iI------i~--~i~~~g~~~~----k~~~~~~~~ag~ 229 (427)
T PF05525_consen 164 FSPIGPPQAP-SGA-YASNPFFKGFLEGYQTMDALAALAFGIII------IN--AIRQKGYKDK----KEIKKYTIKAGL 229 (427)
T ss_pred HcCCCCcccc-chh-hhhhHHHHHHHHHHhhhhHHHHHHHHHHH------HH--HHHHhCCCCH----HHHHHHHHHHHH
Confidence 23321 110 000 00000 0 111 1222221 23222 11 1356666532 233344445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhh
Q 009128 273 FALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 352 (543)
Q Consensus 273 ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~v 352 (543)
++...-.++-....-++|..- +..+++.+ ..+-..+.-+..+|+.+..++++..+.|.+++.+.=+-++.--
T Consensus 230 ia~~lL~~IY~gL~~lGa~~~---~~~~~~~~-----g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~y 301 (427)
T PF05525_consen 230 IAGILLALIYGGLAYLGATSS---GSFPDDIN-----GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEY 301 (427)
T ss_pred HHHHHHHHHHHHHHHHccCCc---ccccCCCC-----HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555665431 11111111 1222445557889999999999999999999988655543323
Q ss_pred hhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHHH
Q 009128 353 MQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLK 414 (543)
Q Consensus 353 m~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~ 414 (543)
++...+ |.+ .|.+. ...+ +.+.+++-+ +..+++.++.=++.+.=|.+.+..+.
T Consensus 302 f~~~~~-kis--Y~~~v-~i~~-i~S~~ian~----Gl~~Ii~~s~PiL~~iYP~~IvLIll 354 (427)
T PF05525_consen 302 FSELFP-KIS--YKVWV-IIFT-IFSFIIANL----GLDQIIKISVPILMFIYPVAIVLILL 354 (427)
T ss_pred HHHHhc-ccC--hHHHH-HHHH-HHHHHHHHh----CHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333 222 22221 1222 223333222 46788888877888888888766554
No 65
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.71 E-value=2.2 Score=51.23 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 326 SSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 326 a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
...+..+|.+.+.++|..+..++..+++
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl 413 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLF 413 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999988888777664
No 66
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.62 E-value=1.5 Score=47.93 Aligned_cols=269 Identities=17% Similarity=0.162 Sum_probs=134.9
Q ss_pred HHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcC----CC-----HHHHHHhhCCCchHHHHHH
Q 009128 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTG----KH-----LAEHCRNEYPKVPNFILWV 127 (543)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG----k~-----Lae~~r~~y~~~~~~~lwi 127 (543)
.++-+|.||++--..|=+.-|-.-+....+..+++..-+..=+-|+..=+ ++ .+--+.+..+ .+|.-.+
T Consensus 73 la~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~--~r~l~v~ 150 (452)
T COG1115 73 LAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLG--MRWLAVL 150 (452)
T ss_pred HHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcC--CcHHHHH
Confidence 34669999988777776666665555555555555554444444444322 11 1111222222 2233333
Q ss_pred HHHHHHHHh-----hhhhHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009128 128 LAEIAIVAC-----DIPEVIGTAFALNMLFKIPVWI-GVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (543)
Q Consensus 128 ~~~laii~~-----di~eviG~Aial~lLfgipl~~-gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~~~~ 201 (543)
++ ++.+.+ ...+.=..+-+++--|++|.|. |+.++.+. ....+ -|.|++-++...+|=.|++.|+...+
T Consensus 151 FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~-~~VI~---GGi~rIa~v~~~vVPfMA~~Yi~~~~ 225 (452)
T COG1115 151 FA-FALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLV-ALVIF---GGIKRIAKVSSKVVPFMAILYVLVAL 225 (452)
T ss_pred HH-HHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHH-HHHHH---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222221 2222333455666678998665 45444432 22222 25788888888888888887776443
Q ss_pred cc---C----CC-HHhhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhccC-------CC---------Ch
Q 009128 202 YA---K----PE-AKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI-------PR---------SV 257 (543)
Q Consensus 202 ~~---~----P~-~~~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~lhS~lv~~r~~-------~~---------~~ 257 (543)
.. + |+ ...+.+.-|-|+ ..+=|.+|.+++--... -.+|+. .. .+
T Consensus 226 ~Ii~~n~~~iP~~i~~If~sAF~~~-------aa~GG~~G~~v~~aI~~-----Gv~RGlfSNEAGmGsap~aaAaA~~~ 293 (452)
T COG1115 226 VIIVLNISQIPAVIALIFSSAFGPK-------AAAGGFAGYTVAQAIRN-----GVKRGLFSNEAGMGSAPIAAAAAKTD 293 (452)
T ss_pred HHHHhhHhhhHHHHHHHHHhcCCch-------hhhhhhhhHHHHHHHHH-----HHHHHhhcccccCCcchhHHHhhcCC
Confidence 21 1 11 223333333221 23345566655433322 112332 11 11
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHHHHHHH
Q 009128 258 RSIKEACR---FYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIAL 334 (543)
Q Consensus 258 ~~vk~a~~---~~~~d~~ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigl 334 (543)
+.+||..- -.++|+.+ -+-++.+++.+++.--.+.. .++ ..+.| .+++..+|+|+.++-++++
T Consensus 294 hPv~QGlv~~~gvfiDT~i----VCt~Ta~iIL~sg~~~~~~~--~~G------~~ltq--~A~~~~~g~~G~~fv~i~l 359 (452)
T COG1115 294 HPVKQGLVQMLGVFIDTLV----VCTATAFIILLSGAWNSGGG--LSG------AALTQ--AAFSSHLGSWGSYFVAIAL 359 (452)
T ss_pred CcHHHhHHHHhhhhhhhhH----HhhHHHHHHHHcCCcccCCC--Cch------HHHHH--HHHHHhcCccHHHHHHHHH
Confidence 22444321 12344432 11123333333332111100 011 12334 4699999999999999999
Q ss_pred HHHhhHhHhhhhhhhhhhhhcccC
Q 009128 335 LASGQSSTITGTYAGQYVMQGFLD 358 (543)
Q Consensus 335 laAg~sStit~t~ag~~vm~gfl~ 358 (543)
+.-++||.+..-|-++..++=..+
T Consensus 360 ~lFafTTIlg~yyyge~~~~fl~~ 383 (452)
T COG1115 360 FLFAFTTILGWYYYGEKNIEFLFG 383 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999888888766653333
No 67
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.57 E-value=0.66 Score=51.64 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=62.0
Q ss_pred hHHHHHHHhhhHHHH----HHHHHHHHHHhhHhHhhhhhh-hhhhhhcccCCcc-----c---chhhHHHHHHHHHHHHH
Q 009128 313 KASFLLRNVLGSWSS----KLFAIALLASGQSSTITGTYA-GQYVMQGFLDLRL-----K---PWLRNFLTRCLAIVPSL 379 (543)
Q Consensus 313 ~a~~~L~~~lG~~a~----~lfaigllaAg~sStit~t~a-g~~vm~gfl~~~~-----~---~~~r~l~tr~iaivpal 379 (543)
...+.+.+.+|+-+. .+-.+.++..|+++..+.+-. ..+.-+|-+...+ . +...+.++.. .++-.+
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~-~i~s~l 404 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLS-CIISIL 404 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHH-HHHHHH
Confidence 456778888887543 455666777777777765422 2223345443210 0 1111222211 122222
Q ss_pred HHHH-HhCccchHHHHHHHHH--HHHhHHHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHHHHHHHH
Q 009128 380 IVAL-IGGSAGAGQLIIIASM--ILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINV 447 (543)
Q Consensus 380 ~v~~-~~g~~~~~~Ll~~aqv--i~s~~LPfalipll~~~s~k~iMG~~~ns~~~~il~wi~~~~i~~lni 447 (543)
+..+ +.+....+.+...+.+ ..+...|.+. -+.+.+|+=..|++.-+++.+...+++.+.....-+
T Consensus 405 lgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~--rlf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~v 473 (550)
T KOG1289|consen 405 LGLLILASATAFNALFSAAAIALFIAYAIPIFC--RLFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIV 473 (550)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHh--heeecccccCCCCccccccccchHHHHHHHHHHHHH
Confidence 2222 2222222233322211 1222344332 222333334678898899999888877555544433
No 68
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.53 E-value=1.7 Score=47.60 Aligned_cols=116 Identities=19% Similarity=0.238 Sum_probs=66.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhh--cCCCHHHHHHhhCCCchHHHH-HHHHHHHHHHhhhhhHHHHHHH
Q 009128 71 QSGAQYKYELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL-WVLAEIAIVACDIPEVIGTAFA 147 (543)
Q Consensus 71 qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~l-wi~~~laii~~di~eviG~Aia 147 (543)
++=+..|-+.+-+-+++-++.+++.+.-+-.-+. +-.+..+-++|.+|++..+.. |.+-. .-+...++|+.+.+.=
T Consensus 39 ~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~-~wv~v~~ae~tAi~~y 117 (462)
T COG1113 39 SAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWF-FWVLVGIAELTAIGIY 117 (462)
T ss_pred hhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3334445555555555556666666666666666 345889999999998765432 22211 1112235566666666
Q ss_pred HHHhh-cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 009128 148 LNMLF-KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAF 187 (543)
Q Consensus 148 l~lLf-gipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~ 187 (543)
++.-| ++|.|..+++..+....+=...-..+..+|..+..
T Consensus 118 ~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 118 LQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 58999988776543322222222225678876544
No 69
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.16 E-value=2.7 Score=45.96 Aligned_cols=267 Identities=20% Similarity=0.200 Sum_probs=119.8
Q ss_pred HHHHHH--hhcCCChHH-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCC-CchHHH
Q 009128 53 GFLVSI--AYIDPGNFE-----TDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYP-KVPNFI 124 (543)
Q Consensus 53 G~Lva~--a~idpGni~-----t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~ 124 (543)
||++|+ +.+|=||+= ++...|+.|= ++|.+ .....++++.-.=--+|--++++..+..|+--| |.+++.
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFl--l~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFL--LPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHH--HHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhh
Confidence 344444 679999973 3444444432 22222 223334433333334566678888888887765 677776
Q ss_pred HHHHHHHHHHH-hhhhhHHHHHHH----------------HHHhhc--ch-hH---HHHHHHHHHHHHHHHHhhhhhHH-
Q 009128 125 LWVLAEIAIVA-CDIPEVIGTAFA----------------LNMLFK--IP-VW---IGVLLTGFSTLILLALQQYGVRK- 180 (543)
Q Consensus 125 lwi~~~laii~-~di~eviG~Aia----------------l~lLfg--ip-l~---~gvlit~~~~~~lL~l~~yg~rk- 180 (543)
-|.-...+.+. +.=.-++|=.+. ..-.|. +. .+ .+-+++.+.+.+++ +.|.+|
T Consensus 90 G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv---~~GV~~G 166 (439)
T COG0733 90 GWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIV---SRGVKKG 166 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---HHhHHhh
Confidence 66532222111 110111110000 000110 11 11 11122222233322 345444
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--ccCCCHHhhhccccccccCC---CChHHHHHHH------hcccchhHHHHHHHHHHh
Q 009128 181 LEFLIAFLVFTMAGCFFAELG--YAKPEAKEVLHGLFVPQLKG---NGATGLAISL------LGAMVMPHNLFLHSALVL 249 (543)
Q Consensus 181 lE~~~~~Lv~im~~~F~~~~~--~~~P~~~~v~~G~~iP~~~~---~~~~~~aval------iGatimP~nl~lhS~lv~ 249 (543)
+||.-++++=.+.++|++..+ ...|...|=.+-++.|..+. .+.+..+.|- +|..+| +-+-|++-|
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~m---itYsSYL~k 243 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIM---ITYSSYLSK 243 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHH---HHHHhhcCc
Confidence 777666655444455554443 45666666556666666432 1111122211 122222 223344322
Q ss_pred hccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHhHHHHHHHhhhHHHHHH
Q 009128 250 SRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 329 (543)
Q Consensus 250 ~r~~~~~~~~vk~a~~~~~~d~~ial~vs~lIn~~iviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~l 329 (543)
+++. .+.+......|+.++++..+.|=-++...+.. .++|. .-.=..+.++-+.+ | +|+.-..+
T Consensus 244 ~~~l------~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--~~~Gp------gL~Fi~LP~if~~m-p-~G~~~~~l 307 (439)
T COG0733 244 KSDL------VSSALSIVLLNTLISLLAGLVIFPALFSFGAD--ASQGP------GLVFIVLPAVFNQM-P-LGTLFGIL 307 (439)
T ss_pred ccch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCC------eeehhHHHHHHHhC-c-hhHHHHHH
Confidence 2222 33444445667776666554332222111111 11111 00111233333333 3 78888899
Q ss_pred HHHHHHHHhhHhHhh
Q 009128 330 FAIALLASGQSSTIT 344 (543)
Q Consensus 330 faigllaAg~sStit 344 (543)
|-+.++.|+.||.+.
T Consensus 308 FFl~l~fAalTS~iS 322 (439)
T COG0733 308 FFLLLLFAALTSAIS 322 (439)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 70
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.06 E-value=0.08 Score=58.13 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 316 ~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
...+..-+++...++.++.+.+.+++..+..++..+.+
T Consensus 278 ~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l 315 (478)
T PF00324_consen 278 IAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLL 315 (478)
T ss_pred hhhhhcccccccceecccchhhhhhhhhhhhcccceee
Confidence 34556667888999999999999999988888776553
No 71
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.02 E-value=3.7 Score=46.42 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 316 ~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
.+++..-++++..+..++.+.+..++..+..++..+++
T Consensus 303 ~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 303 VAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444788899999999988888888888776653
No 72
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=95.21 E-value=5.5 Score=42.88 Aligned_cols=39 Identities=23% Similarity=0.125 Sum_probs=28.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 352 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~v 352 (543)
.........|.+...+..++.+.+.+++..+...+..+.
T Consensus 274 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~ 312 (466)
T COG0531 274 LALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRV 312 (466)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666778888888888888888887776665544
No 73
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.06 E-value=1.2 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHhhHhHhhhh
Q 009128 323 GSWSSKLFAIALLASGQSSTITGT 346 (543)
Q Consensus 323 G~~a~~lfaigllaAg~sStit~t 346 (543)
|+.-..+|-+.++.+|.+|.++..
T Consensus 344 ~~~~~~lFFl~l~~agl~S~i~~~ 367 (523)
T PF00209_consen 344 GRFWAILFFLMLFLAGLTSQISML 367 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHHHHHHHhhhcCCce
Confidence 555667888888888888887644
No 74
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.96 E-value=8 Score=43.36 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=41.3
Q ss_pred HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhhhhhh--cCCCHHHHHHhhCCCchHHHH
Q 009128 71 QSGAQYKY--ELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (543)
Q Consensus 71 qaGA~~Gy--~LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~l 125 (543)
..+|+||| .+||++ ++++++-.+|++-.=.--+ -||++.|+.+|+-|+..+.+.
T Consensus 75 vlAAq~G~Lp~~LWIl-~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~ 132 (575)
T COG1966 75 ALAAQYGWLPAFLWIL-LGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFF 132 (575)
T ss_pred HHHHHhcCcHHHHHHH-HhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHHH
Confidence 46789996 789975 5777777788776544444 699999999999999877653
No 75
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=94.65 E-value=9.5 Score=42.76 Aligned_cols=123 Identities=18% Similarity=0.281 Sum_probs=63.3
Q ss_pred hhHHHHHHHhhcCCChHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC--CHHHHHHhhC-CCch----
Q 009128 50 IGPGFLVSIAYIDPGNFETDL-QSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGK--HLAEHCRNEY-PKVP---- 121 (543)
Q Consensus 50 lGPG~Lva~a~idpGni~t~~-qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk--~Lae~~r~~y-~~~~---- 121 (543)
+|.|+.++.+. -.+.. -+|+--+|.+.-.++..+ +.-+=||+..+= ++|- +.+. +| ++-+
T Consensus 60 IGTGLfvgsG~-----~l~~aGP~g~li~y~i~G~~vy~v--m~sLGEma~~~P-~sGsF~~ya~----rfvdpa~GFa~ 127 (541)
T COG0833 60 IGTGLFVGSGK-----ALSQAGPAGLLIAYLIIGIMVYFV--MQSLGELAVFYP-VSGSFSTYAT----RFVDPAFGFAL 127 (541)
T ss_pred cccceeeecch-----hhhccCcHHHHHHHHHHHHHHHHH--HHHHHHHHhhcC-CCCchhhhhh----hhcCchHHHHH
Confidence 78888765432 22222 356666676655554433 334568888888 7772 3333 22 2222
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009128 122 NFILWVLAEIAIVACDIPEVIGTAFALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (543)
Q Consensus 122 ~~~lwi~~~laii~~di~eviG~Aial~lLf--gipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~L 188 (543)
.|--|+.- .. +.-.|+..+++-++.-+ .+|.|+++.+..+..+++=.++-.+|--.|..+..+
T Consensus 128 gWnYw~~w-~v---~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~i 192 (541)
T COG0833 128 GWNYWLNW-AV---TLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSI 192 (541)
T ss_pred HHHHHHHH-HH---HhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHH
Confidence 22222211 11 11246666666666655 358888877655443333333333455677766544
No 76
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=94.21 E-value=11 Score=41.72 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=37.2
Q ss_pred HHHHHhhcCCChHHHHHH-HHHHhhHHHHHHHHHHH----HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 009128 54 FLVSIAYIDPGNFETDLQ-SGAQYKYELLWIILVAS----CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (543)
Q Consensus 54 ~Lva~a~idpGni~t~~q-aGA~~Gy~LLWvllla~----i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 124 (543)
.+...+-++-+++..+.+ .|. -..+|.++.+. +.++.+-|++.++=-.+| +.-.-.|+-+|+.+++.
T Consensus 16 ~~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf~ 87 (496)
T PRK15238 16 LMIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAFI 87 (496)
T ss_pred HHHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHHH
Confidence 333334455566654333 332 24455544443 345566777776543234 66777888899887764
No 77
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=94.09 E-value=12 Score=41.63 Aligned_cols=119 Identities=23% Similarity=0.218 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHhh----c
Q 009128 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF-ILWVLAEIAIVACDIPEVIGTAFALNMLF----K 153 (543)
Q Consensus 79 ~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~-~lwi~~~laii~~di~eviG~Aial~lLf----g 153 (543)
+-+-.+++++++-+++..+.+|-|...|-+-...+|.-||-+... ...+=+..|++=.-+|..+|. .+++++. +
T Consensus 75 qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg-~av~llL~~i~~ 153 (497)
T COG1953 75 QALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGG-LAVNLLLGSIFP 153 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHhcc
Confidence 345567778888889999999999999999999999999865433 222333344444456666653 3344432 1
Q ss_pred ---ch------------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009128 154 ---IP------------VWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (543)
Q Consensus 154 ---ip------------l~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~ 198 (543)
+| .+++-++.=+....+++.+-+..||+|.+-+.++-++.+.+++
T Consensus 154 ~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~I 213 (497)
T COG1953 154 SLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAI 213 (497)
T ss_pred ccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHH
Confidence 11 1222222222233444444455788888877666665555544
No 78
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=93.36 E-value=4 Score=43.67 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHhhhhhh--cCCCHHHHHHhhCCCchHHHHH
Q 009128 64 GNFETDLQSGAQYKYE--LLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFILW 126 (543)
Q Consensus 64 Gni~t~~qaGA~~Gy~--LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~lw 126 (543)
|-+..-..+ +.|||- +||+++ ++++.-.+|++.+=...+ -||++.|.++++.||+.+.+.-
T Consensus 69 GPI~GPi~a-a~~GwlPa~lWI~~-G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf~ 133 (376)
T PF02554_consen 69 GPIVGPILA-AQFGWLPALLWIVF-GCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLFL 133 (376)
T ss_pred ccchHHHHH-HHhcchHHHHHHHH-ccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 334555555 999996 888754 666666778877766666 7999999999999998776543
No 79
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=88.26 E-value=36 Score=35.65 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH-HHHH-----HHHHHHhhhhhHHHHHHHHHHhhcchhHHH
Q 009128 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL-WVLA-----EIAIVACDIPEVIGTAFALNMLFKIPVWIG 159 (543)
Q Consensus 86 la~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l-wi~~-----~laii~~di~eviG~Aial~lLfgipl~~g 159 (543)
++.+..+.+-+++.|. .|+++.|..++.+||+..+.+ |... ..+....+.+|++- ..++-..|.|..
T Consensus 46 ~~~~~~~~~~~l~~~~---p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~tp~~~~ 118 (359)
T TIGR00912 46 IIIFLLCLMIKIMSKF---PEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIK----TYLLPRTPIIVI 118 (359)
T ss_pred HHHHHHHHHHHHHHHC---CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCHHHH
Confidence 3444455555555554 478999999999999876543 2221 11122223333321 112224676655
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 009128 160 VLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGC 195 (543)
Q Consensus 160 vlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~ 195 (543)
.++..+ +..+..+.|.|.+.|+..++...+...
T Consensus 119 ~l~~l~---~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 119 IILIII---VSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHH---HHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 443332 223334456777777655443333333
No 80
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=87.07 E-value=49 Score=35.81 Aligned_cols=118 Identities=21% Similarity=0.277 Sum_probs=67.9
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCc-hHH
Q 009128 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVAS----------CAALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNF 123 (543)
Q Consensus 55 Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~----------i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~-~~~ 123 (543)
..++.|++.++....- |+.|.|.|-|+++-.. +++=-+-+.+=|++.+ ++-|..|.||... ..|
T Consensus 49 t~~aTYisaSSFigGp--gaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAl---tI~D~l~~RY~s~fl~~ 123 (473)
T COG4145 49 TFTATYISASSFIGGP--GAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNAL---TINDLLFARYQSRFLVW 123 (473)
T ss_pred HHHHHHHHHhhhcCCC--cHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCe---eHHHHHHHHhcchHHHH
Confidence 3344555554444432 5668888889554321 1111223334444443 4777888888653 333
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 009128 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYG 177 (543)
Q Consensus 124 ~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg 177 (543)
..-+...+.-+.....+++|.|=-++...|+|-..|.++++....+.-+.+.+.
T Consensus 124 las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGFR 177 (473)
T COG4145 124 LASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGFR 177 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhccee
Confidence 322223333334445678898877777779999899998887666655666543
No 81
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=84.13 E-value=82 Score=35.81 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHH---HHHHHHHHHhhHhHhhhhhhhhhhhhc
Q 009128 324 SWSSK---LFAIALLASGQSSTITGTYAGQYVMQG 355 (543)
Q Consensus 324 ~~a~~---lfaigllaAg~sStit~t~ag~~vm~g 355 (543)
+++++ ++.++++.+..|+...+.|++.+.+-.
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~a 349 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYA 349 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 45778 999999999999999999999887533
No 82
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=77.11 E-value=1.2e+02 Score=33.38 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCHHHHHHhhCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-----cc-hh--HHHHHHHHHHHHHHHHHhhhhh
Q 009128 107 KHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF-----KI-PV--WIGVLLTGFSTLILLALQQYGV 178 (543)
Q Consensus 107 k~Lae~~r~~y~~~~~~~lwi~~~laii~~di~eviG~Aial~lLf-----gi-pl--~~gvlit~~~~~~lL~l~~yg~ 178 (543)
++-.|+.++-||++.++..+....+-..+..+.-++-.+.-++-++ +. ++ -....++++..+.+.++.+..
T Consensus 105 ~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~- 183 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH- 183 (437)
T ss_pred CChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc-
Confidence 4577888888887666655555444444444333333333333332 22 22 233445555555666665542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC--CHH--hhhccccccccCCCChHHHHHHHhcccchhHHHH
Q 009128 179 RKLEFLIAFLVFTMAGCFFAELGYAKP--EAK--EVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLF 242 (543)
Q Consensus 179 rklE~~~~~Lv~im~~~F~~~~~~~~P--~~~--~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~ 242 (543)
.+- .......+|..++...++.... +.+ +..++ .|+..+.+....++|++...-..|+.+
T Consensus 184 -~l~-~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~--~~~~~~~~~~f~a~g~iaFaf~gH~v~ 247 (437)
T KOG1303|consen 184 -SLS-YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG--YLDLGTIPTVFTALGIIAFAYGGHAVL 247 (437)
T ss_pred -hhH-HHHHHHHHHHHHHHHHHHHHhhccccccCCcccC--cccCCCCcchhhhhhheeeeecCCeee
Confidence 111 1122222333333332222211 110 11122 122221111257899999888888887
No 83
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=75.71 E-value=1.5e+02 Score=33.84 Aligned_cols=335 Identities=18% Similarity=0.212 Sum_probs=149.6
Q ss_pred HhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHH
Q 009128 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQS----LAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAI 133 (543)
Q Consensus 58 ~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~----laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~lai 133 (543)
+++++.+++..-...|++||.+..|.-+-+.......-. .--|.++. +.-|-.+.||++..++..-+...+-+
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~l~~l~f~l~~ 134 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRYLATLSFILMI 134 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchhhHHHHHHHHH
Confidence 456777777777888999999887776655444333221 22344443 34566777888875553222222222
Q ss_pred HHhhhhh--HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHH--HHHHHHHHHH--Hhcc
Q 009128 134 VACDIPE--VIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYG----VRKLEFLIAFLV--FTMAGCFFAE--LGYA 203 (543)
Q Consensus 134 i~~di~e--viG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg----~rklE~~~~~Lv--~im~~~F~~~--~~~~ 203 (543)
+.. +.. +. -++++|-.+|+..+..+.+....|...-.++.-. -+.+..++...- .+|...+.-. +..+
T Consensus 135 ~~~-l~v~~y~-pal~~~qvtg~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V 212 (585)
T KOG2349|consen 135 FLY-LPVDMYA-PALAINQVTGINLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRV 212 (585)
T ss_pred Hhh-eeeeEee-hHHHHHHHhccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccce
Confidence 211 111 22 3567777788777655554444443332332110 144554443321 1111111100 0000
Q ss_pred ---CCCHHhhhc--c-ccccccCCCChHHHHHHHhcccchhHHHH-HHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHH
Q 009128 204 ---KPEAKEVLH--G-LFVPQLKGNGATGLAISLLGAMVMPHNLF-LHSALVLSRKIPRSVRSIKEACRFYMIESGFALA 276 (543)
Q Consensus 204 ---~P~~~~v~~--G-~~iP~~~~~~~~~~avaliGatimP~nl~-lhS~lv~~r~~~~~~~~vk~a~~~~~~d~~ial~ 276 (543)
..+-+.+-. . ..-|+... .... .++|.++|---.| .|+..||.----+ +.|++.+ ..+.+..+
T Consensus 213 ~e~a~~~gr~~~~~~~~~dp~vr~--t~W~--~~~Gg~~~~l~~~~vnQ~~VQR~lsl~---slk~ak~-~~~~~~~~-- 282 (585)
T KOG2349|consen 213 LEKAFDAGRVNFVAEFLRDPTVRH--TPWS--LLFGGTIMWLSYYGVNQLIVQRYLSLP---SLKHAKP-SLLLFGYG-- 282 (585)
T ss_pred eeecccCCceeecccccCCCcccc--cchh--HhcCCcHHHHHHHhhhHHHHhHHhccc---cHHHhhh-hhhhhhhH--
Confidence 001111000 0 01122221 1222 6889998877777 7777776322122 2333322 12333322
Q ss_pred HHHHHHHHHHHHHHhhhccC--CCCCC--CcccccccchHhH-HHHHHHhhh--HHHHHHHHHHHHHHhhHhHhh--hhh
Q 009128 277 VAFLINVSVISVSGAVCSSS--NINPE--DQASCKDLDLNKA-SFLLRNVLG--SWSSKLFAIALLASGQSSTIT--GTY 347 (543)
Q Consensus 277 vs~lIn~~iviv~A~vl~~~--g~~~~--~~~~~~~~~l~~a-~~~L~~~lG--~~a~~lfaigllaAg~sStit--~t~ 347 (543)
.++..+++..-+.+.+.. +-+|- +...+.| |+ ...-...+| +--+-+|.-+.++|..||.-+ ++.
T Consensus 283 --~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D----~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~ 356 (585)
T KOG2349|consen 283 --VLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPD----QLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSL 356 (585)
T ss_pred --HHHHHHhhcccceeEeeecccCCcccccccCCcc----ccccHHHHHhcCCCCCccchhHHHHHHHHHHHHHHhhhhH
Confidence 223333333334332211 11110 0111111 11 223355666 345678999999999886533 344
Q ss_pred hhhhhhhcccCCcccc---hhhHHHHHHHHHHHHHH-HHHHhCccchHHHHHHHHHHHHhH-HHHHHHHHHH
Q 009128 348 AGQYVMQGFLDLRLKP---WLRNFLTRCLAIVPSLI-VALIGGSAGAGQLIIIASMILSFE-LPFALVPLLK 414 (543)
Q Consensus 348 ag~~vm~gfl~~~~~~---~~r~l~tr~iaivpal~-v~~~~g~~~~~~Ll~~aqvi~s~~-LPfalipll~ 414 (543)
++. +.|++.+...++ ..-....|.+.++-.++ +...+..+.+.+++..++.+.+.. =|.+.++.+-
T Consensus 357 s~v-~~eD~ik~~~k~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~gP~~gvF~Lg 427 (585)
T KOG2349|consen 357 STV-FLEDYIKPLRKPLSERELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGGPLLGVFVLG 427 (585)
T ss_pred HHH-HHHHHHHhhcCCcChHHHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 444 566776543331 11112334333222111 111122233446677777676665 4555554443
No 84
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=75.60 E-value=57 Score=34.66 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=57.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHhC-ccchHHHH
Q 009128 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGG-SAGAGQLI 394 (543)
Q Consensus 316 ~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g-~~~~~~Ll 394 (543)
+.++.++|++...++=+.+....++++++..-++....|+.+| .+.|.-.+++. ....++.+.+ .++ +.
T Consensus 70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--lP~wiGali~i-----~~v~i~lfl~~veg---i~ 139 (349)
T COG3949 70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--LPYWIGALIII-----LLVLILLFLGRVEG---II 139 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--ccHHHHHHHHH-----HHHHHHHHHhcccc---ee
Confidence 4688999999999999999999999998777666667777666 45676533321 1122233333 332 21
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q 009128 395 IIASMILSFELPFALVPLLKFT 416 (543)
Q Consensus 395 ~~aqvi~s~~LPfalipll~~~ 416 (543)
.++++..|+..+.++..+
T Consensus 140 ----tvn~iI~P~LIi~l~~v~ 157 (349)
T COG3949 140 ----TVNGIITPFLIIILVLVT 157 (349)
T ss_pred ----eeheeHHHHHHHHHHHHH
Confidence 257888898877765543
No 85
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=75.02 E-value=1.4e+02 Score=32.85 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=48.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH
Q 009128 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (543)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 125 (543)
|++.=+-+.|+||++-=...|.+.|....|..+--.+-+.-+=-+..=-....|++..+.-++ -+|+.....
T Consensus 11 GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~~~-i~~~fg~~f 82 (431)
T COG1114 11 GFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLATR-IGPWFGVLF 82 (431)
T ss_pred HHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHhhh-ccchHHHHH
Confidence 666667789999999999999999988777766544444444444444445577776665443 566555443
No 86
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=72.34 E-value=1.2e+02 Score=31.19 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCCHHhhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhccCCC
Q 009128 176 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPR 255 (543)
Q Consensus 176 yg~rklE~~~~~Lv~im~~~F~~~~~~~~P~~~~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~lhS~lv~~r~~~~ 255 (543)
||+.|+|.+..++.+++.+...+..+. |-.+.++-|..+....+...++.++..+......++.... |+.
T Consensus 73 yG~~r~E~l~~l~~~~~l~~~~~~~~~------esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~--~~~-- 142 (299)
T PRK09509 73 FGHGKAESLAALAQSMFISGSALFLFL------TGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWVV--RKT-- 142 (299)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--HHh--
Confidence 788899998776655443222222221 1122223344332223334555565555443222222111 111
Q ss_pred ChhhHHHHHHHHHHHHHHH
Q 009128 256 SVRSIKEACRFYMIESGFA 274 (543)
Q Consensus 256 ~~~~vk~a~~~~~~d~~ia 274 (543)
+...++...+..+.|...+
T Consensus 143 ~s~~l~a~~~~~~~D~~~s 161 (299)
T PRK09509 143 QSQAVRADMLHYQSDVMMN 161 (299)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 1223444445567777654
No 87
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=71.99 E-value=1.8e+02 Score=32.91 Aligned_cols=68 Identities=26% Similarity=0.428 Sum_probs=32.2
Q ss_pred HhHhhhhhhhhhhhhccc---CCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHHH
Q 009128 340 SSTITGTYAGQYVMQGFL---DLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLK 414 (543)
Q Consensus 340 sStit~t~ag~~vm~gfl---~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~ 414 (543)
.=.+|..+++.+++.-.. +.+.++|.|..--.++++++..+ ++.| +...+-+ + .-...+||+++.++.
T Consensus 417 ~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~l--L~~g--gl~aLqt-~--~ii~alPF~~vll~~ 487 (537)
T COG1292 417 IFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVL--LLIG--GLEALQT-A--AIITALPFSLVLLVM 487 (537)
T ss_pred HHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH--HHhC--CHHHHHH-H--HHHHHccHHHHHHHH
Confidence 334566677777764332 33456676654323444444332 3333 2222211 1 112247988776654
No 88
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=71.75 E-value=1.3e+02 Score=31.11 Aligned_cols=97 Identities=23% Similarity=0.272 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-cCCCHHHHHHhhCCCchHHHHHH------HHHHHHHHhhhhhHHHHHHHHHHhhcch
Q 009128 83 IILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFILWV------LAEIAIVACDIPEVIGTAFALNMLFKIP 155 (543)
Q Consensus 83 vllla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~~~~lwi------~~~laii~~di~eviG~Aial~lLfgip 155 (543)
..+++.+..+++-.+..|+.-- .|+++.|..++.+||+....+-+ ....+.......|++.. .++-..|
T Consensus 37 ~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~----~~lp~TP 112 (320)
T PF03845_consen 37 SVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKT----YLLPETP 112 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcCC
Confidence 4566666666666666777765 89999999999999987664322 12222222233443332 2233568
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 009128 156 VWIGVLLTGFSTLILLALQQYGVRKLEFLIA 186 (543)
Q Consensus 156 l~~gvlit~~~~~~lL~l~~yg~rklE~~~~ 186 (543)
.|.-.++..+.+ .+.-++|.+.+-|...
T Consensus 113 ~~~i~~~~ll~~---~y~a~~G~e~i~R~~~ 140 (320)
T PF03845_consen 113 IWVIILLFLLVA---AYAARKGIEVIARVAE 140 (320)
T ss_pred HHHHHHHHHHHH---HHHHhcCHHHHHHHHH
Confidence 776555443322 3334556665555433
No 89
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=56.57 E-value=3.3e+02 Score=30.52 Aligned_cols=81 Identities=25% Similarity=0.316 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhHhHhhhhhhhhhhhhccc---CCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHH
Q 009128 329 LFAIALLASGQSSTITGTYAGQYVMQGFL---DLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFEL 405 (543)
Q Consensus 329 lfaigllaAg~sStit~t~ag~~vm~gfl---~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~L 405 (543)
+..+..+...+...+|..+++.+++...- +.+.+++.|.+--..+.+++.. +...+|.+....+. ...-+
T Consensus 393 i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~-ll~~ggl~~lq~~~------ii~~l 465 (485)
T PF02028_consen 393 ILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIV-LLLIGGLDALQSAS------IIGGL 465 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHH-HHHHHSSHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHH------HHHHH
Confidence 34444444445556666666666554432 3344556654322233333333 33345432111111 12236
Q ss_pred HHHHHHHHHHh
Q 009128 406 PFALVPLLKFT 416 (543)
Q Consensus 406 Pfalipll~~~ 416 (543)
|+..+.++...
T Consensus 466 P~~~v~~~~~~ 476 (485)
T PF02028_consen 466 PFSFVMLLMCI 476 (485)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777665543
No 90
>PLN03074 auxin influx permease; Provisional
Probab=51.84 E-value=3.8e+02 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH----HHHhHHHHHHHHH
Q 009128 365 LRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASM----ILSFELPFALVPL 412 (543)
Q Consensus 365 ~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqv----i~s~~LPfalipl 412 (543)
..|+..|...++.+.+++... +..+.++.+... ..++.+|......
T Consensus 350 ~~r~~~R~~lv~~~~~iA~~I--P~fg~llsLvGs~~~s~l~~i~P~l~~l~ 399 (473)
T PLN03074 350 CLRALARLPVVVPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPSLAHML 399 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666776666666655542 334455554333 3444566655444
No 91
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=49.36 E-value=91 Score=27.96 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 009128 467 EVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHL 500 (543)
Q Consensus 467 ~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~~ 500 (543)
+..++|++. .+-.+|-..++|.++|..+..++-
T Consensus 78 ~llilG~L~-fIPG~Y~~~i~y~a~rg~~Gysf~ 110 (115)
T PF05915_consen 78 ALLILGILC-FIPGFYHTRIAYYAWRGYKGYSFD 110 (115)
T ss_pred hHHHHHHHH-HhccHHHHHHHHHHHcCCCCCCHh
Confidence 333444443 344679999999999988876653
No 92
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=48.56 E-value=2.9e+02 Score=27.52 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHH
Q 009128 176 YGVRKLEFLIAFLVFT 191 (543)
Q Consensus 176 yg~rklE~~~~~Lv~i 191 (543)
||+.|+|.+..++.++
T Consensus 52 yG~~r~E~l~~l~~~~ 67 (268)
T TIGR01297 52 FGHGRAEILAALLNGL 67 (268)
T ss_pred CchHHHHHHHHHHHHH
Confidence 8899999987766544
No 93
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=46.26 E-value=3e+02 Score=27.03 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHhHHHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 009128 399 MILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLG 472 (543)
Q Consensus 399 vi~s~~LPfalipll~~~s~k~iMG~~~ns~~~~il~wi~~~~i~~lni~~l~~~~~~~~~~~~~~~~~~~~~~ 472 (543)
++.++.--|+...++++..+.+--...|++.|.-++....++++- +.++ +.+.|.+--.+..+|-.+..++|
T Consensus 131 ll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lW-i~v~-i~t~~lPtslN~~L~pi~l~IiG 202 (226)
T COG4858 131 LLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLW-IAVM-IATVFLPTSLNPQLPPIALTIIG 202 (226)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHH-HHHH-HHHhhCCCcCCcCCchHHHHHHH
Confidence 456777778888888888765544456666665555444443333 3333 44445443344555555554444
No 94
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=41.55 E-value=5.1e+02 Score=28.35 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=41.8
Q ss_pred HhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCch
Q 009128 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVP 121 (543)
Q Consensus 48 ~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~ 121 (543)
+.+|-|++-.-. +-.++|-.+|.-++=...+.+...+.++.-+++.+-.. +..+.+++.+|+..
T Consensus 18 ti~GaGIl~~P~--------afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 18 TIMGAGILAMPY--------AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGKLG 81 (411)
T ss_pred hhhccHHHHhHH--------HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCCCc
Confidence 356666664332 34566666666666666666666676666666655544 88888888888876
No 95
>PRK03557 zinc transporter ZitB; Provisional
Probab=40.94 E-value=4.4e+02 Score=27.42 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 009128 176 YGVRKLEFLIAFLVFTM 192 (543)
Q Consensus 176 yg~rklE~~~~~Lv~im 192 (543)
||+.|+|.+..++.+++
T Consensus 81 yG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIA 97 (312)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 78999999877665543
No 96
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.06 E-value=3.6e+02 Score=26.23 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHHHHhcCccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 009128 401 LSFELPFALVPLLKFTSSKVKMG-MHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLG 472 (543)
Q Consensus 401 ~s~~LPfalipll~~~s~k~iMG-~~~ns~~~~il~wi~~~~i~~lni~~l~~~~~~~~~~~~~~~~~~~~~~ 472 (543)
.++...++...+.++..+. ++ +.|.+.|..+ .......+..+-++.+. .+.+...+..+|.+..++++
T Consensus 119 ~~i~~G~~~~~~~~~i~~~--~~~~~r~~~~k~~-~~~~~~~~~w~~~~~~~-~~lp~~inp~l~~~~~iiig 187 (206)
T PF06570_consen 119 VSIVGGLVFYFIFKYIYPY--KKKKKRPSWWKYI-LISVLAMVLWIVIFVLT-SFLPPVINPVLPPWVYIIIG 187 (206)
T ss_pred HHHHHHHHHHHHHHHHhcc--cccccccHHHHHH-HHHHHHHHHHHHHHHHH-HHccccCCcCCCHHHHHHHH
Confidence 4444555555555555443 22 2444444443 33333333333333332 33443344445544444333
No 97
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=38.98 E-value=2.9e+02 Score=28.81 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCHHhhhccccccccCCCChHHHHHHHhcccchhHHHH
Q 009128 175 QYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLF 242 (543)
Q Consensus 175 ~yg~rklE~~~~~Lv~im~~~F~~~~~~~~P~~~~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~ 242 (543)
.||..|.|.+..++++++.+...++.+. .+ .+-++.|+.+....+...+++++..++-+...
T Consensus 74 pyGh~k~E~l~sl~~~~~i~~~g~~i~~-----~a-~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~ 135 (304)
T COG0053 74 PYGHGKAETLASLIVSILIFAAGFEILL-----EA-IKRLISPQPVEPPLLALGVALISIVIKEALYR 135 (304)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHhCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3888999999877766554433333332 11 22224465555455667777777766655443
No 98
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=38.56 E-value=5.4e+02 Score=27.78 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhhhcccC
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLD 358 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm~gfl~ 358 (543)
...+-+..+|+.++.+..+..+...++-+.+-.-++....+.+++
T Consensus 67 ~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~ 111 (394)
T PF03222_consen 67 LTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLG 111 (394)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 345678889999888888877777766665544444445555543
No 99
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=34.03 E-value=6.2e+02 Score=27.14 Aligned_cols=25 Identities=8% Similarity=-0.024 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 009128 471 LGIFGFSAMAVYLAGVAYLVLRKNK 495 (543)
Q Consensus 471 ~~~~~~~~~~~y~~~~~yl~~~~~~ 495 (543)
..+++.++.+.|...+-|....|.+
T Consensus 315 ~~lv~lPivL~Y~~~~Y~vF~gk~~ 339 (346)
T COG1294 315 VALVFLPIVLAYTIWSYRVFRGKIT 339 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445667888898887776665544
No 100
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=32.46 E-value=6.3e+02 Score=26.74 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=11.2
Q ss_pred hHHHHH-HHHHHHHHHHHHHhC
Q 009128 366 RNFLTR-CLAIVPSLIVALIGG 386 (543)
Q Consensus 366 r~l~tr-~iaivpal~v~~~~g 386 (543)
|+.+.+ ...++|.+.+..+..
T Consensus 126 r~~l~~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 126 RRQLRWLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 334444 445567766665554
No 101
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=31.90 E-value=8e+02 Score=27.79 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=68.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHH---HHHHHhhhhhHHHH
Q 009128 68 TDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAE---IAIVACDIPEVIGT 144 (543)
Q Consensus 68 t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~---laii~~di~eviG~ 144 (543)
|++|.|-.| |+-.-.+..+..+..++-.+.+|-|..=+-+-.-.-|.-||-+.. +|.... .+++=.-.+..+|.
T Consensus 80 s~l~lGLsw-wq~~~tv~vG~~~~~~f~~lns~~G~~yhIsFpv~sR~sFGiygS--~~pIi~R~vma~vwYg~~awiGg 156 (572)
T KOG2466|consen 80 SALELGLSW-WQTWITVWVGYLFTAIFLVLNSRPGSDYHISFPVLSRSSFGIYGS--LWPIINRVVMACVWYGVNAWIGG 156 (572)
T ss_pred hHHhccCCH-HHHHHHHHHHHHHHHHHHHHccCCCcccccceeeeeeeehhhhHh--HHHHHHHHHHHHhhhhhhhhhhh
Confidence 344555443 233334566777888888888998887666655555555554322 233322 33333345555542
Q ss_pred -HHHHHH------hhcchh-----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009128 145 -AFALNM------LFKIPV-----------WIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (543)
Q Consensus 145 -Aial~l------Lfgipl-----------~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~ 198 (543)
.+.+-+ ..++|. +.+-.+.=+.+..+++..-|+.|+++..-+++.-.-+.+|++
T Consensus 157 ecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LI 228 (572)
T KOG2466|consen 157 ECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLI 228 (572)
T ss_pred hhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHH
Confidence 332211 113543 334333333455556666677888888766654444555554
No 102
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=30.09 E-value=4e+02 Score=28.94 Aligned_cols=62 Identities=18% Similarity=0.375 Sum_probs=35.0
Q ss_pred CccccCCCCcc-cccCCc----chHHHHHHh---hhHHHHHHHhhc--CCChHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 009128 24 APLIKNEDADQ-IVVPDK----TSWKNLFAY---IGPGFLVSIAYI--DPGNFETDLQSGAQYKYELLWIILVASCAALI 93 (543)
Q Consensus 24 ~~~~~~~~~~~-~~~~~~----~~~r~~l~~---lGPG~Lva~a~i--dpGni~t~~qaGA~~Gy~LLWvllla~i~~~~ 93 (543)
.|-.||..++. ...+++ ..+|+.|-+ +=||++.+.+-. +.+++.. .+.|..+++.+.+++
T Consensus 113 APmV~~~~~~~~ls~e~kt~iNywFRHiwE~~~PlYpgiiLas~l~gi~~~~~v~----------~~~P~~~~~~~~G~~ 182 (385)
T PF04165_consen 113 APMVEEAAEKMGLSPEEKTFINYWFRHIWEFFWPLYPGIILASALSGISVGEFVL----------AMWPITLLAFLIGWL 182 (385)
T ss_pred hHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCCCHHHHHH----------HHHHHHHHHHHHHHH
Confidence 45566553333 233232 235665544 789999988654 3444332 356667777777765
Q ss_pred HH
Q 009128 94 IQ 95 (543)
Q Consensus 94 ~Q 95 (543)
+-
T Consensus 183 ~~ 184 (385)
T PF04165_consen 183 FF 184 (385)
T ss_pred HH
Confidence 44
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=29.56 E-value=8e+02 Score=27.18 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=46.4
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 009128 110 AEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEF 183 (543)
Q Consensus 110 ae~~r~~y~~~~~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~ 183 (543)
....++.+|+...+.+-+...+|+..+-++.+-+.+-=++-++.++-..++.++.+.++ .+.+.|++.+=+
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~---~lSn~G~~~II~ 338 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSM---VVSNLGLSQLIQ 338 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH---HHHHhHHHHHHH
Confidence 34467778888888888888888888888887777776666666765555554443332 244555444333
No 104
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=28.84 E-value=4.8e+02 Score=25.17 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHH-H------HhhhhhHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 009128 121 PNFILWVLAEIAI-V------ACDIPEVIGTAFALNML---FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVF 190 (543)
Q Consensus 121 ~~~~lwi~~~lai-i------~~di~eviG~Aial~lL---fgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~ 190 (543)
..+-+|.++.+-. + +..++|++.+. +--++ ||++......+-++.+=+...+.||.++.+-..+..=++
T Consensus 50 i~~GiW~maavi~~l~IpkpGaAl~~Ev~Aa~-ve~ll~sqfgi~tivsgfvQGlgaE~vFa~~kyr~~Sl~~~mlagmg 128 (192)
T COG4721 50 ILFGIWFMAAVIAALFIPKPGAALIGEVLAAL-VEVLLGSQFGIGTIVSGFVQGLGAEFVFAVTKYRYYSLPVLMLAGMG 128 (192)
T ss_pred hHHHHHHHHHHHeeeeecCCcHHHHHHHHHHH-HHHHHcCCCCchHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHhhc
Confidence 4556787765321 1 23467766332 21222 578876666665554433344556666666666555456
Q ss_pred HHHHHHHHHHhcc
Q 009128 191 TMAGCFFAELGYA 203 (543)
Q Consensus 191 im~~~F~~~~~~~ 203 (543)
+-..+|.++++..
T Consensus 129 ~~~~sf~~eyf~~ 141 (192)
T COG4721 129 ITLASFVYEYFKL 141 (192)
T ss_pred hhHHHHHHHHHHH
Confidence 6678899988863
No 105
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=27.97 E-value=1.1e+02 Score=30.48 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhHhHhhhhhhhhhhhhcccCCcccchhhHHHH
Q 009128 327 SKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLT 370 (543)
Q Consensus 327 ~~lfaigllaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~t 370 (543)
.-+|++|+|..- +.+ .+|--.=..|||.|.|+|||.|..+.
T Consensus 181 A~i~AvG~FfvN--AVl-aSYNIgGTIEGfHDPKFKr~p~~via 221 (240)
T PRK00968 181 AGILAVGIFFVN--AVL-ASYNIGGTIEGFHDPKFKRWPRAVIA 221 (240)
T ss_pred HHHHHHHHHHHH--HHH-HhhccCceeecCCCcccccchHHHHH
Confidence 447778877642 222 33322224799999999999987543
No 106
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.85 E-value=5.5e+02 Score=24.30 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=4.9
Q ss_pred HHHHhhcch
Q 009128 147 ALNMLFKIP 155 (543)
Q Consensus 147 al~lLfgip 155 (543)
++.++||-+
T Consensus 116 ~fa~lfgg~ 124 (193)
T PF06738_consen 116 AFALLFGGS 124 (193)
T ss_pred HHHHHHCCC
Confidence 344567644
No 107
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.72 E-value=82 Score=28.60 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhcccccc
Q 009128 480 AVYLAGVAYLVLRKNKEA 497 (543)
Q Consensus 480 ~~y~~~~~yl~~~~~~~~ 497 (543)
++-++++.|+..|..++.
T Consensus 78 Ig~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 344567788887776653
No 108
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=25.59 E-value=4.6e+02 Score=28.11 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009128 44 KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANL 101 (543)
Q Consensus 44 r~~l~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRl 101 (543)
++..-.+=|+.++++- .||++-+.+++++.+..+..+.+..|+
T Consensus 21 ~~VllALlP~~~~~i~---------------~fG~~al~~~~~~v~~av~~E~l~~k~ 63 (350)
T PRK00816 21 LWVILAALPGIAAQTY---------------FFGWGTLIQILLAIVTALLAEAAVLKL 63 (350)
T ss_pred HHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457799998775 489999999999999999998888776
No 109
>PRK09928 choline transport protein BetT; Provisional
Probab=24.48 E-value=1.2e+03 Score=27.41 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=36.1
Q ss_pred HHHHHhhHhHhhhhhhhhhhhhcccC------CcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHH
Q 009128 333 ALLASGQSSTITGTYAGQYVMQGFLD------LRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELP 406 (543)
Q Consensus 333 gllaAg~sStit~t~ag~~vm~gfl~------~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LP 406 (543)
..+...+...+|..+++.+++..+-. .+.++|.|.+--..+..++.. +...+| ...| ..+. ...-+|
T Consensus 414 l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~-LL~~GG---L~aL-Qt~s--ii~alP 486 (679)
T PRK09928 414 VATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLG-MLMTNG---ISAL-QNTT--VIMGLP 486 (679)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHH-HHHhcC---HHHH-HHHH--HHHHHH
Confidence 33344455667777888877754422 244567665432233333332 223333 2222 2111 122478
Q ss_pred HHHHHHHH
Q 009128 407 FALVPLLK 414 (543)
Q Consensus 407 falipll~ 414 (543)
|..+.++.
T Consensus 487 f~~I~ll~ 494 (679)
T PRK09928 487 FSFVIFFV 494 (679)
T ss_pred HHHHHHHH
Confidence 87776554
No 110
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=22.96 E-value=1e+03 Score=26.17 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 009128 109 LAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEF 183 (543)
Q Consensus 109 Lae~~r~~y~~~~~~~lwi~~~laii~~di~eviG~Aial~lLfg-ipl~~gvlit~~~~~~lL~l~~yg~rklE~ 183 (543)
|.+..++.+|+.....+-+...+|+..+-++=+..+|--++-+++ ++-..++.++.+.+++ +.+.|++++-+
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~---ian~Gl~~Ii~ 335 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFI---IANLGLDQIIK 335 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH---HHHhCHHHHHH
Confidence 445566778998888888888888888877766666666666666 6655666555443333 44555444333
No 111
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=21.76 E-value=9.4e+02 Score=25.19 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHhccCCCHHhhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhccC
Q 009128 176 YGVRKLEFLIAFLVFT--MAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI 253 (543)
Q Consensus 176 yg~rklE~~~~~Lv~i--m~~~F~~~~~~~~P~~~~v~~G~~iP~~~~~~~~~~avaliGatimP~nl~lhS~lv~~r~~ 253 (543)
|||+|+|-+.+++-++ .++++.+ .-|..+-++-|...+. ..++.+|++|=.+--- +++...|+
T Consensus 84 fGy~R~eiLaa~~nav~Li~~s~~I--------~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~-----~a~ll~~~- 148 (296)
T COG1230 84 FGYKRLEILAAFLNALLLIVVSLLI--------LWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLV-----SALLLHKG- 148 (296)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcCCCCCCc-cchHHHHHHHHHHHHH-----HHHHhhCC-
Confidence 7899999876554222 2222222 1133444455654432 3566778777554322 33444454
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 009128 254 PRSVRSIKEACRFYMIESG 272 (543)
Q Consensus 254 ~~~~~~vk~a~~~~~~d~~ 272 (543)
+.++.++|-+.-..+-|+.
T Consensus 149 ~~~~lN~r~a~LHvl~D~L 167 (296)
T COG1230 149 HEENLNMRGAYLHVLGDAL 167 (296)
T ss_pred CcccchHHHHHHHHHHHHH
Confidence 2223456655444555654
No 112
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=21.33 E-value=6.7e+02 Score=23.33 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=28.0
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009128 150 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (543)
Q Consensus 150 lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F~~ 198 (543)
-++++|...+++=..+ -+++|..+.-..+++|..-.+++.-|.+.|+-
T Consensus 28 ~ll~lPiPGsViGMlL-L~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVP 75 (141)
T PRK04125 28 SFLPIPMPASVIGLVL-LFVLLCTKVVKLEQVESLGTALTNNIGFLFVP 75 (141)
T ss_pred HHcCCCCcHHHHHHHH-HHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 4567776655432221 12223333333577888888888888887763
No 113
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=21.08 E-value=1.1e+03 Score=25.64 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=24.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTIT 344 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit 344 (543)
-....|..+|+..+.+..+..+...+.-+..
T Consensus 74 ~~~~~~~~~G~~~~~li~~s~~~~~~~~~~a 104 (415)
T COG0814 74 ITSLVEDYLGKKGGILIGLSYFFALYGLLVA 104 (415)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998888888887776654
No 114
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=7e+02 Score=26.69 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009128 426 ANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKE 496 (543)
Q Consensus 426 ~ns~~~~il~wi~~~~i~~lni~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~ 496 (543)
-|.-|+....-+.- +.+++++.+++++|...+ .++...+++|+-=+.++-+|....
T Consensus 258 ~n~DwLd~~ysf~r-~aillSilyfySSf~Rfl--------------lVm~aal~iYl~q~g~~r~r~e~~ 313 (391)
T KOG4583|consen 258 ENRDWLDWGYSFFR-VAILLSILYFYSSFSRFL--------------LVMGAALFIYLHQLGWFRFRAEAA 313 (391)
T ss_pred chhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhccccccccch
Confidence 34555555544443 444566666777665432 112234456887777777777664
Done!