Query 009128
Match_columns 543
No_of_seqs 293 out of 1316
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 99.2 2.7E-07 9.2E-12 100.4 38.8 133 54-188 34-174 (501)
2 3l1l_A Arginine/agmatine antip 98.8 0.00013 4.3E-09 76.8 39.6 39 314-352 262-300 (445)
3 3gia_A Uncharacterized protein 98.6 0.001 3.5E-08 69.8 41.1 40 314-353 260-299 (444)
4 4djk_A Probable glutamate/gamm 98.5 0.00038 1.3E-08 74.6 36.1 30 324-353 287-316 (511)
5 3dh4_A Sodium/glucose cotransp 98.3 0.001 3.5E-08 72.7 33.9 116 56-174 31-151 (530)
6 2xq2_A Sodium/glucose cotransp 98.2 0.0077 2.6E-07 66.6 37.1 115 57-174 61-180 (593)
7 2a65_A Leutaa, Na(+):neurotran 90.7 21 0.00072 38.6 33.1 61 59-119 21-87 (519)
8 3j1z_P YIIP, cation efflux fam 39.2 1.1E+02 0.0039 30.1 9.3 16 176-191 75-90 (306)
9 3h90_A Ferrous-iron efflux pum 31.8 81 0.0028 30.6 6.8 18 176-193 66-83 (283)
10 3j00_Z Cell division protein F 20.7 3.5E+02 0.012 22.2 7.6 6 523-528 48-53 (98)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.15 E-value=2.7e-07 Score=100.42 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=83.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHH
Q 009128 54 FLVSIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAE 130 (543)
Q Consensus 54 ~Lva~a~idpGni~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~ 130 (543)
.+...+-+..+++.......+ | ++.++.+++++++..++-.+.++.|..+|.+-.+.+|..||++...+.-+...
T Consensus 34 ~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~ 111 (501)
T 2jln_A 34 AIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKA 111 (501)
T ss_dssp HHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHH
Confidence 344445555555554433332 3 34556778888888888889999999999999999999999987765444443
Q ss_pred HHHHHhhhhhHHHHHHHHHHh----hcch-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009128 131 IAIVACDIPEVIGTAFALNML----FKIP-VWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (543)
Q Consensus 131 laii~~di~eviG~Aial~lL----fgip-l~~gvlit~~~~~~lL~l~~yg~rklE~~~~~L 188 (543)
+..++-..-+....+.+++.+ +|.+ .+++.++..+.++.+.+.+-...+++|++...+
T Consensus 112 i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 112 LLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPV 174 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 443443333333344444444 3776 677877766655554444433356667765443
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.75 E-value=0.00013 Score=76.77 Aligned_cols=39 Identities=15% Similarity=-0.035 Sum_probs=32.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 352 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~v 352 (543)
..+..+...|++...++.++.+.+.+++..+..+++.+.
T Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 300 (445)
T 3l1l_A 262 FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT 300 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999988888777664
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.60 E-value=0.001 Score=69.82 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 314 a~~~L~~~lG~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
..+..++..|++...++.++.+.+.+++..+..+++.+.+
T Consensus 260 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 260 LAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999988888776653
No 4
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.54 E-value=0.00038 Score=74.58 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhHhHhhhhhhhhhhh
Q 009128 324 SWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (543)
Q Consensus 324 ~~a~~lfaigllaAg~sStit~t~ag~~vm 353 (543)
++...++.++.+.+.+++..+..++..+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGM 316 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888877777665543
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.35 E-value=0.001 Score=72.67 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=71.5
Q ss_pred HHHhhcCCChHHHHHHHHHHhhHHHH---HHHHHHH-HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHH
Q 009128 56 VSIAYIDPGNFETDLQSGAQYKYELL---WIILVAS-CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (543)
Q Consensus 56 va~a~idpGni~t~~qaGA~~Gy~LL---Wvllla~-i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~l 131 (543)
+.++++....+......+..+|+.-. |...++. ++++.+-...-|.+. .+..|..++||++..+...-+...+
T Consensus 31 ~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~---~T~~e~l~~Rfg~~~~~~~a~~~l~ 107 (530)
T 3dh4_A 31 LIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWIS 107 (530)
T ss_dssp HHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHcCcHHHHHHHHHHHH
Confidence 35678888899999999999998754 3322222 222222223334443 6899999999998776544332222
Q ss_pred HHHH-hhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 132 AIVA-CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 132 aii~-~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
..+. ....+..+.+..++.++|+|.+.++++.++.+.+.-.++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~G 151 (530)
T 3dh4_A 108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 151 (530)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 1111 223345566778899999999999888776554433333
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.20 E-value=0.0077 Score=66.59 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=71.7
Q ss_pred HHhhcCCChHHHHHHHHHHhhHHHHHHH---HHH-HHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHH
Q 009128 57 SIAYIDPGNFETDLQSGAQYKYELLWII---LVA-SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIA 132 (543)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~LLWvl---lla-~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~la 132 (543)
.+++++...+......+.++|+...|.. .++ .++++.+-...-|.+. .+..|.+++||++..+...-+...+.
T Consensus 61 ~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Rfg~~~~~~~ai~~l~~ 137 (593)
T 2xq2_A 61 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWISL 137 (593)
T ss_dssp HGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHccCchHHHHHHHHHHH
Confidence 3567888888888888889998754322 222 2223333233334443 67999999999987765443222221
Q ss_pred -HHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009128 133 -IVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (543)
Q Consensus 133 -ii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (543)
.+.....++.+.+..++.++|+|.+.++++.++.+.+.-.++
T Consensus 138 ~~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~G 180 (593)
T 2xq2_A 138 YIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 180 (593)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhc
Confidence 222223455667888899999999999888776554444444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=90.68 E-value=21 Score=38.57 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=37.3
Q ss_pred hhcCCChHHHHHHHHHHhhH-H----HHHHHHHHHHHHHHHHHHHhhhhh-hcCCCHHHHHHhhCCC
Q 009128 59 AYIDPGNFETDLQSGAQYKY-E----LLWIILVASCAALIIQSLAANLGV-VTGKHLAEHCRNEYPK 119 (543)
Q Consensus 59 a~idpGni~t~~qaGA~~Gy-~----LLWvllla~i~~~~~Q~laaRlgv-vTGk~Lae~~r~~y~~ 119 (543)
..+|-||+=---.--.++|= . -+-.+++.-+..+.++..-+|++- .++++..+..|+--|+
T Consensus 21 ~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~ 87 (519)
T 2a65_A 21 NAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87 (519)
T ss_dssp HHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCS
T ss_pred HHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCC
Confidence 56999998554433333332 2 223333334445566666777766 6888999988876665
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=39.16 E-value=1.1e+02 Score=30.10 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 009128 176 YGVRKLEFLIAFLVFT 191 (543)
Q Consensus 176 yg~rklE~~~~~Lv~i 191 (543)
||++|.|.+..++.++
T Consensus 75 yG~~R~E~l~al~~~~ 90 (306)
T 3j1z_P 75 YGHGKAEPLAALAQSA 90 (306)
T ss_dssp SCCTTHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHH
Confidence 7889999987665444
No 9
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=31.82 E-value=81 Score=30.64 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 009128 176 YGVRKLEFLIAFLVFTMA 193 (543)
Q Consensus 176 yg~rklE~~~~~Lv~im~ 193 (543)
||++|.|.+..++.+++.
T Consensus 66 yG~~r~E~l~~l~~~~~l 83 (283)
T 3h90_A 66 FGHGKAESLAALAQSMFI 83 (283)
T ss_dssp SCSTTHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 788999998766655443
No 10
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=20.73 E-value=3.5e+02 Score=22.24 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.2
Q ss_pred CCcccc
Q 009128 523 LPREDI 528 (543)
Q Consensus 523 ~~~~~~ 528 (543)
.+++|+
T Consensus 48 vs~~~I 53 (98)
T 3j00_Z 48 TRNDDI 53 (98)
T ss_dssp SCSSSS
T ss_pred cCHHHH
Confidence 333333
Done!