Query 009129
Match_columns 543
No_of_seqs 162 out of 2029
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 19:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 3.8E-32 1.3E-36 292.1 21.7 479 2-537 10-510 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 1.5E-31 5E-36 285.0 23.5 444 2-536 11-478 (491)
3 4gc0_A D-xylose-proton symport 100.0 1.6E-28 5.4E-33 261.4 14.8 407 39-541 54-474 (491)
4 1pw4_A Glycerol-3-phosphate tr 100.0 1.5E-27 5E-32 250.7 19.3 398 4-532 28-436 (451)
5 3o7q_A L-fucose-proton symport 99.9 5.6E-25 1.9E-29 230.2 23.3 348 6-491 28-409 (438)
6 2gfp_A EMRD, multidrug resista 99.9 6.5E-24 2.2E-28 217.8 11.4 167 7-200 3-169 (375)
7 2cfq_A Lactose permease; trans 99.9 3.7E-23 1.3E-27 216.0 7.3 391 4-535 7-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.5E-12 5.3E-17 135.9 11.8 178 4-204 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 1.6E-11 5.6E-16 127.6 15.4 168 4-200 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 5.6E-12 1.9E-16 131.1 9.8 172 10-207 226-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 1.1E-10 3.7E-15 123.6 13.5 184 7-208 286-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 1.3E-08 4.6E-13 107.3 17.4 177 10-208 282-465 (491)
13 2gfp_A EMRD, multidrug resista 98.8 7.3E-10 2.5E-14 112.8 -0.7 161 5-192 200-363 (375)
14 2xut_A Proton/peptide symporte 98.3 5.2E-07 1.8E-11 95.9 5.2 150 41-207 336-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=100.00 E-value=3.8e-32 Score=292.12 Aligned_cols=479 Identities=27% Similarity=0.446 Sum_probs=292.3
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcC------CCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLN------QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA 75 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~------~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~ 75 (543)
++|..+.+++..++..+++|++.+.++.|+++++| .|..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 46778889999999999999999999999999999 999999999999999999999999999999669999999
Q ss_pred HHHHHHHHHHHHHHHhh-cccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccc
Q 009129 76 SFSIIYCLGMTLLTLTA-SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 154 (543)
Q Consensus 76 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 154 (543)
.+.++..++.++++++. + .+.++++|++.|++.+...|...++++|++|+++ |+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~ 144 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHS-------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KS 144 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSC-------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TT
T ss_pred HHHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hH
Confidence 99999999999998875 4 7889999999999999999999999999999988 76
Q ss_pred ce---eehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHh
Q 009129 155 SF---FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFR 231 (543)
Q Consensus 155 ~~---~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (543)
++ +++.+...++|..++|.+++++.+..||++.|++.++..+++.+.+....++.+.+++++++..+..+.+....+
T Consensus 145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (524)
T 2xut_A 145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHh
Confidence 54 455889999999999999999998889999999988877766666555444433333322222221122111122
Q ss_pred hcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhh----hhhcccccCCCCCCCc-------ccchhhHHHHH
Q 009129 232 KSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAA----VETQTDRVKGSADPWR-------LCTVTQVEELK 300 (543)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 300 (543)
++..+ +++.....+..+........+ +.+......... ...+.. ...+|+ .+..+..+++|
T Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
T 2xut_A 225 TKVEG-KGNIGLVLALIGGVSAAYALV---NIPTLGIVAGLCCAMVLVMGFV----GAGASLQLERARKSHPDAAVDGVR 296 (524)
T ss_dssp --CTT-HHHHHHHHHHHHHHHHHHTGG---GTTTTCSSHHHHHHHHHHHHHH----HTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred hhhcc-cCccchhhhhhhhhhhhhhhc---ccchhhhhhhhhhhhhhhhccc----ccchhhHHhhhhccccHhHHHHHH
Confidence 11100 000000000000000000000 000000000000 000000 000110 00001112233
Q ss_pred HHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCC
Q 009129 301 AIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERG 380 (543)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~ 380 (543)
+.+....+......++..+.+..+.+..+....+.. .+ .+.+.+...+.+..++..++.+++..+..+|..++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 369 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK--- 369 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---
Confidence 333333444444444444555444333222222111 11 35667777788888888999988766666665444
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
.+..+.+..|.++.+++++........ .+.+.+.+.+++++.+++.+++++...|..++++.|.+|++.
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLM-----------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 556667788888888887766543110 000112455667778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeec
Q 009129 461 RSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPD-NLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK 537 (543)
Q Consensus 461 rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~ 537 (543)
||+++|+.++...+|+.+++.+.+.+.+..+ .+|.++ +. +...+.|++.+++++++.+++++..+++++++
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999998875321 123211 00 11123377778888888777777766665543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=1.5e-31 Score=285.05 Aligned_cols=444 Identities=19% Similarity=0.266 Sum_probs=288.7
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhh-----cCCCchhhhhhHHHHHHHHhhhhhhhHHHhhh-ccchhHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQ-----LNQGNVTASNNVTNWSGTCYITPLIGAFLADS-YMGRFWTIA 75 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Grk~~l~ 75 (543)
|+|..+.+++..++..+++|++.++++.|++++ +|.|..+.+++.+.+.++..++++++|+++|| + |||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~ 89 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVF 89 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHH
Confidence 467788889999999999999999999999988 99999999999999999999999999999999 8 9999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccc
Q 009129 76 SFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 155 (543)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 155 (543)
.+.++..++.++++++++ .+.++++|+++|+|.+...|+..++++|++|++++. |+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~ 146 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFG-------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDA 146 (491)
T ss_dssp HHHHHHHHHHHHHHSCCS-------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHH
T ss_pred HHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----cee
Confidence 999999999999988754 778899999999999999999999999999987632 667
Q ss_pred eeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceec---cCCCC-ChHHHHHHHH-----
Q 009129 156 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRI---QKPGG-SPLTRIMQVI----- 226 (543)
Q Consensus 156 ~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~----- 226 (543)
++++++...++|..++|.+++++.+..|||++|++.++..+++++.+....++... ++++. .+..+..+..
T Consensus 147 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 226 (491)
T 4aps_A 147 GFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSL 226 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCC
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHH
Confidence 88889999999999999999999998999999999887766666555443332211 11111 1111111100
Q ss_pred ---------HHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHH
Q 009129 227 ---------VASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVE 297 (543)
Q Consensus 227 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (543)
.........+ .+++....... ........... .|+.... ...
T Consensus 227 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~~~~--------~~~~~~~-~~~ 277 (491)
T 4aps_A 227 AVAGFIAIIVVMNLVGWNS-LPAYINLLTIV-------------------AIAIPVFYFAW--------MISSVKV-TST 277 (491)
T ss_dssp CCHHHHHHHHHHHHHSSCC-TTHHHHHHHHH-------------------HHHHHHHHHHH--------HC---------
T ss_pred HHHHHHHHHHHHHhccCcc-cccchhhhhHH-------------------HHHHHHHHHHH--------Hhhcccc-cHH
Confidence 0000000000 00000000000 00000000000 0000000 001
Q ss_pred HHHHHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCC
Q 009129 298 ELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGH 377 (543)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~ 377 (543)
++++......+......++..+.+....+..+.. ...+ ......+.+.....+..++..++.+++ .+|.++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r 349 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAA---ERVD-SSWFPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKN 349 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHH---HSCC-CSSSCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH---HHhc-cCccCHHHHhccchHHHHHHHHHHHHH----HHHHhcc
Confidence 2222222233333333333443333332111111 1111 001345556666667777777777664 4444333
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccC
Q 009129 378 ERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP 457 (543)
Q Consensus 378 ~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P 457 (543)
+ .....++..|.++.++++......... .+.+.+.+.++.++.+++.+++.+...|..++++.|..|
T Consensus 350 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 350 Q--PSSPTKFAVGLMFAGLSFLLMAIPGAL-----------YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTHHHHHH-----------CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred C--CCchHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 1 344566778888888888777655322 111123466677788899999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceee
Q 009129 458 DAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536 (543)
Q Consensus 458 ~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~ 536 (543)
++.||+++|+.++...+|+.+++.+.+.+.+. ++...|..+++++++..++.++..++.+++
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877641 223457777888888877777766666554
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.6e-28 Score=261.43 Aligned_cols=407 Identities=13% Similarity=0.093 Sum_probs=233.2
Q ss_pred chhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC--CCchHHHH
Q 009129 39 NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHP--TGAQTAVT 116 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 116 (543)
..+.|++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........ .....+ ...+...+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~---~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN---PDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS---SSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---chhHHHHHHhhhHHHH
Confidence 45678899999999999999999999999 9999999999999999999986421000000 000000 11348899
Q ss_pred HHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc--------cccchhh
Q 009129 117 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN--------VGWGWGF 188 (543)
Q Consensus 117 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~--------~g~~~~f 188 (543)
+++|+++|+|.|+..+..+++++|..|+++ |++..++.+....+|..+++.++...... .+||+.+
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF 203 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh
Confidence 999999999999999999999999999998 99999999999999999998887766432 2466665
Q ss_pred hHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccch
Q 009129 189 GIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKF 268 (543)
Q Consensus 189 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (543)
.+..+..++.++... ..||+|+++..+++.|++.+..++....+....
T Consensus 204 ~~~~~~~~~~~~~~~--------------------------------~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 204 ASECIPALLFLMLLY--------------------------------TVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HTTHHHHHHHHHHGG--------------------------------GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhh--------------------------------cCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 555443333322211 145666666665555544443322211110000
Q ss_pred h--hhhhhhhcccccCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccCh
Q 009129 269 F--DKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIR-LLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPS 345 (543)
Q Consensus 269 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (543)
. +.......... ... .......++... .......+.........+.+ ......+ ......
T Consensus 252 ~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~ 314 (491)
T 4gc0_A 252 AVQEIKHSLDHGRK----TGG-----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAP-------EVFKTLG-ASTDIA 314 (491)
T ss_dssp HHHHHHHHHHHHHH----HTT-----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHH-------HHHHHSS-CCHHHH
T ss_pred HHHHHHHHHHhhhh----hhh-----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcch-------HHHHhcC-CCccch
Confidence 0 00000000000 000 000000011111 11111111100000000000 0011111 000111
Q ss_pred hhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccc
Q 009129 346 ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 425 (543)
Q Consensus 346 ~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (543)
........+..++...+. ..+.+|. ++++.+..+....+++.+..+..... ..
T Consensus 315 ~~~~~~~~~~~~~~~~~~----~~l~dr~-------Grr~~~~~~~~~~~~~~~~l~~~~~~----------------~~ 367 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLA----IMTVDKF-------GRKPLQIIGALGMAIGMFSLGTAFYT----------------QA 367 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHHT----------------TC
T ss_pred hhHHHHHHHHHHHHHHHH----HHHHHhh-------cCcchhccchHHHHHHHHHHHHHHhc----------------cc
Confidence 111122222222222222 2345553 33466677777777777666544321 01
Q ss_pred hhHHHHHHHHHHHHH-HHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCC
Q 009129 426 TIFWQVPQYFIVGCA-EVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLN 504 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g-~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~ 504 (543)
..+..+...++...+ .....|..+.+..|.+|.+.|++++|+.+..+++++++++.+.|.+.+......
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~---------- 437 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA---------- 437 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 122222222222222 233447888999999999999999999999999999999999988754211000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccCC
Q 009129 505 RGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541 (543)
Q Consensus 505 ~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 541 (543)
..+....|++++++++++.++.+++.||+|+|+.||.
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei 474 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL 474 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH
Confidence 0112245788899999999999999999999988764
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.5e-27 Score=250.66 Aligned_cols=398 Identities=11% Similarity=-0.005 Sum_probs=250.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
+....+++..+...+..+.+.+.++. +.+++ .|..+.+++.+++.++..++.++.|+++||+ |||++++.+.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHH
Confidence 33444555556665555555555555 44567 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHH----hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 84 GMTLLTL----TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 84 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.+++++ +.+ .+.++++|+++|++.+...+...++++|.+|+++ |++++++
T Consensus 105 ~~~~~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 159 (451)
T 1pw4_A 105 VMLFMGFVPWATSS-------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSV 159 (451)
T ss_dssp HHHHHHHCHHHHSS-------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHH
T ss_pred HHHHHHhhhhcccc-------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHH
Confidence 9999988 644 7788999999999999999999999999999888 9999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccC
Q 009129 160 FYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVP 238 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
.+...++|..++|.+++++.+..| ||+.|++.++..++..++.....++.+......+. +
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------ 220 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------------ 220 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------------
Confidence 999999999999999999888888 99999998877666555444433332211100000 0
Q ss_pred CcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHH-HHHHHhHHHHh
Q 009129 239 ADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLL-PVWASGIVFAT 317 (543)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 317 (543)
+.. ++++++... + ..+ ..+++.....+....+.+.... ...........
T Consensus 221 ~~~-----~~~~~~~~~---~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
T 1pw4_A 221 EYK-----NDYPDDYNE---K--AEQ--------------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 270 (451)
T ss_dssp TTC-----CC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-----ccccccchh---h--hhc--------------------ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 000 000000000 0 000 0000000000000111222111 11111111111
Q ss_pred hccCcceEEEEecccccCCCCCCcccChh---hhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHH
Q 009129 318 VYSQMSTMFVLQGNTMDQHMGPNFKIPSA---SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 394 (543)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~ 394 (543)
.....+. + .....+ .+.. .+.....+..++..++..+ +.+|..+ ++++.+..+.++.
T Consensus 271 ~~~~~~~-~------~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 271 ILDWSPT-Y------LKEVKH----FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHH-H------BTTBSC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHH
T ss_pred HHHHHHH-H------HHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHH
Confidence 1111111 1 111111 2222 2223333333344433333 4454200 3345555555554
Q ss_pred H-HHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHH
Q 009129 395 I-FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA 473 (543)
Q Consensus 395 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 473 (543)
. ++.+.+.... ..+.+......++.+++.....+..+++..|..|++.||++.|+.+....
T Consensus 331 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 331 VTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 4 4444433210 12445566667778888888888889999999999999999999999999
Q ss_pred H-HHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009129 474 V-GNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532 (543)
Q Consensus 474 i-g~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 532 (543)
+ |+.+++.+.+.+.+.. ++...|++.+++.+++.++.++..++
T Consensus 393 ~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 9999999999998632 23456777788887777766665443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=5.6e-25 Score=230.19 Aligned_cols=348 Identities=12% Similarity=0.076 Sum_probs=226.0
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
...+++..+...+....+. .+..++++++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLND-ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 3344445555555555444 444557789999999999999999999999999999999999 99999999999999999
Q ss_pred HHH---HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 86 TLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 86 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
+++ ..+++ .+.++++|++.|+|.+...+...++++|.+|+++ |++++++.+.
T Consensus 106 ~~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 160 (438)
T 3o7q_A 106 ALFWPAAEIMN-------------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQT 160 (438)
T ss_dssp HHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHH
T ss_pred HHHHhcccccc-------------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHH
Confidence 998 55543 8899999999999999999999999999999998 9999999999
Q ss_pred hHhHHHHHHhHHHHHhh-cccc-------------------------cchhhhHHHHHHHHHHHHHHhcC-cceeccCCC
Q 009129 163 SINIGALVASSVLVWIQ-MNVG-------------------------WGWGFGIPAVAMAIAVVFFFSGS-RLYRIQKPG 215 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~~~-~~~~~~~~~ 215 (543)
..++|..++|.+++++. +..+ ||+.|++.++..++..+.+...+ ++.+.++++
T Consensus 161 ~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 240 (438)
T 3o7q_A 161 FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS 240 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 99999999999999988 5554 89999877765554444433322 111100000
Q ss_pred CChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhh
Q 009129 216 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQ 295 (543)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (543)
+++. + ...+. ++ +
T Consensus 241 ~~~~--------------------------------------------~--~~~~~----------------~~-----~ 253 (438)
T 3o7q_A 241 DAKQ--------------------------------------------G--SFSAS----------------LS-----R 253 (438)
T ss_dssp CSST--------------------------------------------T--SHHHH----------------HH-----H
T ss_pred cccc--------------------------------------------c--chhhh----------------HH-----H
Confidence 0000 0 00000 00 0
Q ss_pred HHHHHHHHH-HHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccChh---hhhccchhHHHHHHHhhhhhhhhhh
Q 009129 296 VEELKAIIR-LLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSA---SLSLFDTLSVIFWAPIYDIVIVPFA 371 (543)
Q Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~ 371 (543)
..+.+.+.. .+................+.++. ....+ .+.. .+.....+..++..++..+ +.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~ 319 (438)
T 3o7q_A 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV------EEIPG----MTAGFAANYLTGTMVCFFIGRFTGTW----LI 319 (438)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSTT----CCHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hccCC----cchhHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 000011111 11111111111111111111101 11111 2222 2222223333333333333 44
Q ss_pred hhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHh
Q 009129 372 RKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEF 451 (543)
Q Consensus 372 ~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 451 (543)
+| .++++.+..+.++.+++.+..... +..+....+++.+++.+...|..+++
T Consensus 320 ~r-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 320 SR-------FAPHKVLAAYALIAMALCLISAFA---------------------GGHVGLIALTLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HH-------SCHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HH-------hcchHHHHHHHHHHHHHHHHHHHc---------------------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 455566777777777776655543 11223444577888888888999999
Q ss_pred hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 009129 452 FYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTT 491 (543)
Q Consensus 452 ~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~ 491 (543)
..|..|++ ++++.++.. ...+|+.+++.+.+.+.+..+
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999988 999999887 677999999999999987543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=6.5e-24 Score=217.83 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=148.9
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+.+++..++..+......+.++. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 45566777777777777777766 4578999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.+.++++ .+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...++
T Consensus 81 ~~~~~~~-------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTSS-------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhcc-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 9988864 8889999999999999999999999999999988 99999999999999
Q ss_pred HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHH
Q 009129 167 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999987766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=3.7e-23 Score=215.96 Aligned_cols=391 Identities=8% Similarity=-0.033 Sum_probs=220.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|+.+.+....++..+++..+.++++.|+++++|.|..+.|++.+.+.++..++++++|+++||+ ||||+++.+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4555666667777777888889999999999999999999999999999999999999999999 999999998887765
Q ss_pred HHHHH---HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehh
Q 009129 84 GMTLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 160 (543)
Q Consensus 84 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 160 (543)
+.... ...... ...+..++.+.+++.+...+...+...+..++..+ +++..++..
T Consensus 86 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~~ 143 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRA 143 (417)
T ss_dssp CHHHHHHHTHHHHH------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHHH
Confidence 33222 111100 00123345555555544444444444444433211 167777777
Q ss_pred hhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCc
Q 009129 161 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPAD 240 (543)
Q Consensus 161 ~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (543)
+...++|..++|.+++++.+ .+|++.|++.++..++..+......++ +++..+ .+
T Consensus 144 ~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~-- 198 (417)
T 2cfq_A 144 RMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VA-- 198 (417)
T ss_dssp SSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SS--
T ss_pred HHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------cc--
Confidence 78889999999999999876 589999987765433333222111111 100000 00
Q ss_pred chhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHHhHHHHhhc
Q 009129 241 KSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFATVY 319 (543)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (543)
++++ . ..++....+.. +..+++ +....... ......+....
T Consensus 199 --------~~~~--~------~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 199 --------NAVG--A------NHSAFSLKLAL---------------------ELFRQP-KLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp --------SSSS--S------CCCCCCHHHHH---------------------HHTTCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred --------cccc--c------ccccccHHHHH---------------------HHhcCC-chhhHHHHHHHHHHHHHHHH
Confidence 0000 0 00000000000 000111 11111111 11111111111
Q ss_pred cCcceEEEEecccccCCCCCCcccCh---hhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 009129 320 SQMSTMFVLQGNTMDQHMGPNFKIPS---ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIF 396 (543)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~ 396 (543)
++.+.++. ...+ ...... +....++.+..++...+.. ++.|| .++++.+..+.++.++
T Consensus 241 ~~~~~~~~-------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g----~l~dr-------~g~~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 241 QQFANFFT-------SFFA-TGEQGTRVFGYVTTMGELLNASIMFFAP----LIINR-------IGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHH-------HTSS-SHHHHTHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHh-ccCCChhHHHHHHHHHHHHHHHHHHHHH----HHHHH-------hcHHHHHHHHHHHHHH
Confidence 11111110 0000 000111 1122222222223333332 34444 3444566677777766
Q ss_pred HHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHH-HHHHHHHH
Q 009129 397 SMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL-SLTTVAVG 475 (543)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig 475 (543)
+++..... .+.+.+++..++.+++.....+..+.++.|..|++.||++.++ +++...+|
T Consensus 302 ~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 302 RIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence 65544321 1334444555566666666667778999999999999999999 48888999
Q ss_pred HHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 476 NYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 476 ~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
+.+++.+.|.+.+.. ++...|.+.+++.+++.++.++..|++++
T Consensus 362 ~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 362 MIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999887622 23456777788888877766655555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.37 E-value=1.5e-12 Score=135.89 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=149.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc-cchhHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY-MGRFWTIASFSIIYC 82 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~-~Grk~~l~~~~~~~~ 82 (543)
|..+.+++..++....++++..+++.|+++.+|.+..+.++..+...++..++.++.|+++||+ .|||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3455677778888889999999999999988999999999999999999999999999999994 288888888777766
Q ss_pred -HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 83 -LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 83 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
++.+++.+..+ .+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 332 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 388 (451)
T 1pw4_A 332 TIATIVYWMNPA-----------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG 388 (451)
T ss_dssp HHHHHHTTSCCT-----------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHH
T ss_pred HHHHHHHHHhcc-----------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHH
Confidence 55555544321 136667777888999999888888999999999988 999999999
Q ss_pred hhHhH-HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 162 LSINI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 162 ~~~~l-g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
...++ |..++|.+.+++.+..||+..|++.++..+++.++...
T Consensus 389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999888777666655544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=1.6e-11 Score=127.65 Aligned_cols=168 Identities=15% Similarity=0.154 Sum_probs=137.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHH-HhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNY-LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
+..+..++..++....++++..+++.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+.+..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 455666777777878888999999999 8888899999999999999999999999999999998 99999999999988
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+++...++ ... .+..++.|++.+...|...++..|.+|++ ++.+.++..
T Consensus 337 ~~~~~~~~~~~-------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 388 (438)
T 3o7q_A 337 ALCLISAFAGG-------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHCCH-------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred HHHHHHHHcCC-------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence 88887776642 333 33447888999999999999999998844 455555555
Q ss_pred hHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~ 200 (543)
...+|..++|.+.|++.+..| ++..|.+.++..++.++
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 556999999999999999988 99999987655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.29 E-value=5.6e-12 Score=131.06 Aligned_cols=172 Identities=8% Similarity=-0.004 Sum_probs=129.3
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCC---CchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQ---GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~---s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
++..++....++.....++.|+++.++. +..+.+...+...++..++.++.|+++||+ |||+.+..+.++..++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHH
Confidence 3333444445555666788888766653 234456667777778888899999999999 999999988888887766
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh-hhhhHh
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-FYLSIN 165 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ 165 (543)
.+++..+ .+.+++..++.+++.+...+...++++|.+|++. |+++.++ ++...+
T Consensus 305 ~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 305 GSSFATS-------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQ 359 (417)
T ss_dssp HHTTCCS-------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHH
T ss_pred HHHHhcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHh
Confidence 6655432 5566666677777777777777899999999888 9999888 477788
Q ss_pred HHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 166 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+|..++|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus 360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999988888888888888776666655444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.18 E-value=1.1e-10 Score=123.58 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=139.3
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHH-----HHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-----SFSIIY 81 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~-----~~~~~~ 81 (543)
+.+.+..++....+....+.++.|.++.++.+..+.+...+...++..++.++.|++.||+ |||+... .+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence 3344555666677777888899999988888888889999999999999999999999999 9986655 677777
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.++.+++........ .+...+.+.+.+..++.|++.+...|...+++.|.+|++. |+++.++.+
T Consensus 365 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 428 (491)
T 4aps_A 365 GLSFLLMAIPGALYG----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWF 428 (491)
T ss_dssp HHHHTTTHHHHHHCC----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHH
T ss_pred HHHHHHHHHHHHhcC----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 777666655431000 0011235667777888999999999999999999999999 999999999
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
...++|..++|.+.+++.+ .++...|.+.++..+++.+..+...++
T Consensus 429 ~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 467777887777666665555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.95 E-value=1.3e-08 Score=107.26 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=123.0
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
....++.....+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+...+.++.+.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHH
Confidence 3333443344333444445556677888887777777778888999999999999999 999999999999888877776
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHH-HHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTF-VALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
...... . .....+. ...+..+.+ ....|....+.+|.+|.+. |+++.++.+...++|.
T Consensus 361 ~~~~~~-------------~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~ 419 (491)
T 4gc0_A 361 TAFYTQ-------------A-PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLAN 419 (491)
T ss_dssp HHHHTT-------------C-CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHH
T ss_pred HHHhcc-------------c-chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHH
Confidence 553211 0 1122222 222222333 3345777899999999999 9999999999999999
Q ss_pred HHHhHHHHHhhc------ccccchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 169 LVASSVLVWIQM------NVGWGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 169 ~l~~~i~~~~~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
.+++.+.+++.+ ..++...|++.++..+++.+..+++.||
T Consensus 420 ~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 420 YFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 998877665533 3456677888777777776666666664
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.75 E-value=7.3e-10 Score=112.79 Aligned_cols=161 Identities=11% Similarity=-0.032 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHH-HHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII-YCL 83 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~-~~i 83 (543)
..+..++..++....++++..+++.|+++.+|.+..+.+...+...++..++.++.|+++||+ ||+ +..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHH
Confidence 345566777778888888889999999988999999999999999999999999999999998 872 3333333 222
Q ss_pred HHH--HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 84 GMT--LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 84 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
+.. ....... .+.+.+++..++.|++.+...|...+++.|..| ++ |+++.++.+
T Consensus 277 ~~~~~~~~~~~~-----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~ 332 (375)
T 2gfp_A 277 GLLMWIPDWFGV-----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVG 332 (375)
T ss_dssp SSSSSHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHH
T ss_pred HHHHHHHhhhcc-----------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHH
Confidence 222 1222110 135666777888999999999999999999998 66 999999999
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHH
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPA 192 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~ 192 (543)
...++|..++|.+.+.+.+..+++..+.+.+
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999988777877766644
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.26 E-value=5.2e-07 Score=95.94 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=97.4
Q ss_pred hhhhhHHHHHHHHhhhhhhhHHHh----hhccch----hHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCch
Q 009129 41 TASNNVTNWSGTCYITPLIGAFLA----DSYMGR----FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQ 112 (543)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~G~la----D~~~Gr----k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (543)
..+.......++..+..++.|++. ||. || ++.+..+.++..++.++++...... .++...+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~ 404 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM----------DGGSALS 404 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------TTTCCCC
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCcC
Confidence 355555555566666667776664 554 43 3566677777777776665542100 0001123
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc--cc------
Q 009129 113 TAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV--GW------ 184 (543)
Q Consensus 113 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~--g~------ 184 (543)
.+.+.+..++.|++.+...|...+++.|..|++. |++++++.+...++|..++|.+.+++.+.. +|
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~ 478 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM 478 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 5667777889999999999999999999999998 999999999999999999999999987632 23
Q ss_pred ---chhhhHHHHHHHHHHHHHHhcCc
Q 009129 185 ---GWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 185 ---~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+..|++.++..+++.+.+....+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 479 SVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23366665555555554443333
Done!