Query 009130
Match_columns 543
No_of_seqs 200 out of 1994
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 19:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.3E-33 4.5E-38 291.5 22.5 395 10-523 24-435 (451)
2 3o7q_A L-fucose-proton symport 100.0 4.4E-32 1.5E-36 279.0 29.2 373 10-514 22-425 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.5E-28 5.3E-33 256.5 24.5 431 3-534 1-475 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 9E-29 3.1E-33 258.3 22.7 408 33-527 34-477 (491)
5 2gfp_A EMRD, multidrug resista 99.9 4.7E-28 1.6E-32 243.8 9.0 337 30-507 17-362 (375)
6 2cfq_A Lactose permease; trans 99.9 1.1E-25 3.7E-30 229.9 11.7 366 32-524 27-402 (417)
7 2xut_A Proton/peptide symporte 99.9 3.4E-24 1.1E-28 225.6 20.9 147 33-202 33-192 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 2.5E-13 8.5E-18 141.2 15.3 176 329-523 13-198 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.5 1.1E-13 3.8E-18 142.0 12.1 178 328-524 27-209 (451)
10 3o7q_A L-fucose-proton symport 99.5 3.4E-13 1.1E-17 137.9 14.4 183 331-520 28-228 (438)
11 2xut_A Proton/peptide symporte 99.4 3E-12 1E-16 134.1 15.1 173 329-520 12-197 (524)
12 2gfp_A EMRD, multidrug resista 99.4 1E-12 3.5E-17 131.5 8.5 172 334-524 5-177 (375)
13 4gc0_A D-xylose-proton symport 98.9 5.1E-09 1.8E-13 108.4 13.5 112 364-482 55-185 (491)
14 2cfq_A Lactose permease; trans 98.9 1.4E-10 4.6E-15 117.8 -0.8 171 324-514 2-180 (417)
15 2g9p_A Antimicrobial peptide l 33.7 4.7 0.00016 20.8 -1.0 12 83-94 4-15 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.3e-33 Score=291.47 Aligned_cols=395 Identities=13% Similarity=0.115 Sum_probs=288.9
Q ss_pred hhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccc
Q 009130 10 NSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRF 87 (543)
Q Consensus 10 ~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~ 87 (543)
+++|..+....+..+..+ ..+.++.+.|.+.+|+ .+..+.+++.+.+.++.. .+++.|++.||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------------ 90 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------------ 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC------------
Confidence 345665555444444333 3456777889999999 999999988777777776 6889999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcc----CCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHH
Q 009130 88 LRGPWVVHFTGAILCFTGYFLVWASVVGL----LPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGI 162 (543)
Q Consensus 88 ~~g~r~~~~~g~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi 162 (543)
||+++.++.++.+++.++ +++ +++ ++.+++.|+++|++.+...+....+++|++| ++|++++++
T Consensus 91 ---~r~~l~~~~~~~~~~~~~-----~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 159 (451)
T 1pw4_A 91 ---PRVFLPAGLILAAAVMLF-----MGFVPWATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 159 (451)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-----HHHCHHHHSS---SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHH-----HHhhhhcccc---HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH
Confidence 999999999999999999 555 566 6889999999999999999999999999998 679999999
Q ss_pred HHHhhhhhHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHH-HHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHH
Q 009130 163 LKGFVGLSGAVLTQVYKTVCNGNP-STYILVLALLPTLVSL-LFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVIT 240 (543)
Q Consensus 163 ~~~~~~lg~~i~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (543)
...+.++|.++++.+++.+.+..+ |++.+.+..+..++.. +...++++.
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~----------------------------- 210 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT----------------------------- 210 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCC-----------------------------
Confidence 999999999999999988765555 7766655544333322 111222211
Q ss_pred HHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcch
Q 009130 241 VMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDM 320 (543)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (543)
+++.+..++++ .+.+ .+.+.+ ++++++...++.
T Consensus 211 -----------------------------------~~~~~~~~~~~-~~~~-----~~~~~~------~~~~~~~~~~~~ 243 (451)
T 1pw4_A 211 -----------------------------------PQSCGLPPIEE-YKND-----YPDDYN------EKAEQELTAKQI 243 (451)
T ss_dssp -----------------------------------STTTCCCSCTT-TCCC------------------------CCTHH
T ss_pred -----------------------------------HhhcCCCChhh-hccc-----ccccch------hhhhcccccccc
Confidence 11110000000 0000 000000 000000111112
Q ss_pred hHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhh--hhhcCC
Q 009130 321 NLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVF--LHKLGW 397 (543)
Q Consensus 321 ~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~--~~~~~~ 397 (543)
..++.++++.+|...+..++.......+..+.|.++++ .|+++.+++...++..++.++++++.|++.||+ ++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--- 320 (451)
T 1pw4_A 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--- 320 (451)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH---
T ss_pred hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---
Confidence 24678899999999988888877777888889999987 799999999999999999999999999999998 543
Q ss_pred CchHHHHHHHHHHH-HHHHHHhhc---CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhh-hhh
Q 009130 398 ARPIFMVITLVAMS-IGHIAIASG---FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV-GSY 472 (543)
Q Consensus 398 ~r~~~~~~~~~~~~-i~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i-g~~ 472 (543)
+.+..+.++.. ++++++... +.....+..++.|++.+...+....++.|.+|+++++++.|+.+....+ |.
T Consensus 321 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~- 396 (451)
T 1pw4_A 321 ---GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS- 396 (451)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH-
T ss_pred ---hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH-
Confidence 44444544444 555554422 3344556677788888888888889999999999999999999999998 88
Q ss_pred hhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130 473 ICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL 523 (543)
Q Consensus 473 i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 523 (543)
.++|.+.|.+.|..| |+..|++.+++.+++.++.+++.+
T Consensus 397 ~~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 397 VAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999887 999999999888888777665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=4.4e-32 Score=278.96 Aligned_cols=373 Identities=11% Similarity=0.036 Sum_probs=272.3
Q ss_pred hhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccc
Q 009130 10 NSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRF 87 (543)
Q Consensus 10 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~ 87 (543)
+++|..+.......+..+. .+.++.+.|.+.+++|+++.+.+++.+.+.++.. .+++.|++.||+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------------ 89 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS------------ 89 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC------------
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc------------
Confidence 3344444433333333333 3567788899999999999999988787777775 7889999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHh
Q 009130 88 LRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGF 166 (543)
Q Consensus 88 ~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~ 166 (543)
||+++.++.++.+++.++.+. .+++++ ++.+++.|+++|+|.+...+....+++|++| ++|++++++...+
T Consensus 90 ---~r~~l~~~~~~~~~~~~~~~~--~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 90 ---YKAGIITGLFLYALGAALFWP--AAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH--HHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHHHHh--cccccc---HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence 999999999999999999321 156666 8999999999999999999999999999998 6899999999999
Q ss_pred hhhhHHHHHHHHHHhc-CCCc-------------------------hhHHHHHHHHHHHHHHHHHhheeccCCCCcccch
Q 009130 167 VGLSGAVLTQVYKTVC-NGNP-------------------------STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKK 220 (543)
Q Consensus 167 ~~lg~~i~~~l~~~l~-~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (543)
.++|.++++.+++.+. +... |++.++...+...+..
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~------------------ 223 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA------------------ 223 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH------------------
Confidence 9999999999888876 3322 3333322221111100
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCC
Q 009130 221 HLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELAD 300 (543)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (543)
.... ....|+.++ + +++
T Consensus 224 ---------------------------------------------~~~~--~~~~p~~~~---~-------------~~~ 240 (438)
T 3o7q_A 224 ---------------------------------------------LLIM--LTKFPALQS---D-------------NHS 240 (438)
T ss_dssp ---------------------------------------------HHHH--HCCCCCCTT---T-------------CCC
T ss_pred ---------------------------------------------HHHH--HHcCCcccc---c-------------ccc
Confidence 0000 011111110 0 000
Q ss_pred CccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHH-HHhh-CCCchhhHHHHHHHHHHHh
Q 009130 301 DESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQV-GESL-HYSTTEINSLISLWSIWNF 378 (543)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~a~~~~~~~~i~~~ 378 (543)
++++++...+.++.+++|.+|...+..++.......+..+.|.+ .++. |+++.+++...++..++..
T Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 309 (438)
T 3o7q_A 241 -----------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_dssp -----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence 00011122445788899999999988888877777788889998 8776 9999999999999999999
Q ss_pred hhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhh
Q 009130 379 FGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGT 458 (543)
Q Consensus 379 ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~ 458 (543)
+++++.|+++||+++| +.+..+.++..++++++...+.....+..++.|++.+..++...++..|.+|++ ++.
T Consensus 310 ~~~~~~g~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPH------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp HHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred HHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 9999999999999654 566677777777666655433334455567888888888888888989999966 888
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130 459 IFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG 514 (543)
Q Consensus 459 ~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 514 (543)
+.++.. ...++. .++|.+.|.+.|..|+ |+..|++.+++.++.
T Consensus 383 ~~~~~~-~~~~g~-~~~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 383 GSSFIV-MTIIGG-GIVTPVMGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHH-HTTHHH-HHHHHHHHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred hhhHHH-HHHHHH-HHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 888776 456777 4889999999998863 777777655444333
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.5e-28 Score=256.50 Aligned_cols=431 Identities=13% Similarity=0.047 Sum_probs=266.7
Q ss_pred ccccccchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCC--------ChhhHHHHHHHhhhccc-ccchhhHhhh
Q 009130 3 MEERLSTNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNY--------DQSTLERVAVFKDMGGS-AGILSGLLFS 72 (543)
Q Consensus 3 ~~~~~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~--------s~~~~~~~~~~~~~~~~-~~~~~G~l~d 72 (543)
|+++.++++-|.+.+.+.+-.+..|. ...++...|.++++++. ++.+.+++.+.+.+|.. .+++.|+++|
T Consensus 1 m~~~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laD 80 (491)
T 4gc0_A 1 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN 80 (491)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCCCcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556655544443333332 23455667888887743 23455677778888876 5778999999
Q ss_pred hcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcc------------------CCCCChHHHHHHHHHHHh
Q 009130 73 YVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGL------------------LPRPVPVPLMCLFIFTAA 134 (543)
Q Consensus 73 ~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~~~~~r~l~G 134 (543)
|+| ||+++.++.+++.++.++ +++ +++ ++.++++|+++|
T Consensus 81 r~G---------------Rk~~l~~~~~l~~i~~i~-----~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G 137 (491)
T 4gc0_A 81 RFG---------------RRDSLKIAAVLFFISGVG-----SAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGG 137 (491)
T ss_dssp HTC---------------HHHHHHHHHHHHHHHHHH-----HHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHH
T ss_pred Hhc---------------CHHHHHHHHHHHHHHHHH-----HHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHH
Confidence 999 999999999999999999 663 445 899999999999
Q ss_pred cCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC--------CchhHHHHHHHHHHHHHHHHH
Q 009130 135 HAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG--------NPSTYILVLALLPTLVSLLFM 205 (543)
Q Consensus 135 ~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~ 205 (543)
+|.|...+....+++|+.| ++|++..++...+..+|..+++.+....... ..|++.+....++.++.+...
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 9999999999999999998 6899999999999999988888777665432 235555555566666555554
Q ss_pred hheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCC
Q 009130 206 SHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKL 285 (543)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (543)
.+.++.|..-..+++...+...+. +...+
T Consensus 218 ~~~peSp~~L~~~~~~~~a~~~l~--------------------------------------------~~~~~------- 246 (491)
T 4gc0_A 218 YTVPESPRWLMSRGKQEQAEGILR--------------------------------------------KIMGN------- 246 (491)
T ss_dssp GGSCCCHHHHHHTTCHHHHHHHHH--------------------------------------------HHHHH-------
T ss_pred hcCCCChHHHHHcCchhHHHHhHH--------------------------------------------HhcCC-------
Confidence 444433210000000000000000 00000
Q ss_pred CCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHH-HHhhhchhhhhhhchHHHHHhhCCCch
Q 009130 286 STPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIA-TLCGMGSGIATMNNIAQVGESLHYSTT 364 (543)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~-~~~~~~~~~~~~~~~~~~~~~~g~s~~ 364 (543)
+..+++.. ..++...+..+.......++.+........ .+........+..+.+.+.+..+.+..
T Consensus 247 -------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4gc0_A 247 -------------TLATQAVQ-EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD 312 (491)
T ss_dssp -------------HHHHHHHH-HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH
T ss_pred -------------chhHHHHH-HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc
Confidence 00000000 000000000111112233334444333333 333333344456666777788888888
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCcch-HHHHHHHHHhhhhh-
Q 009130 365 EINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----SGFPGN-LFVGTMIVGVCYGS- 438 (543)
Q Consensus 365 ~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~-~~~~~~l~G~~~g~- 438 (543)
+......+.++...++.++.+++.||+||| +.+..+...+.++++.+. ...... ..+..++...+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRK------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSH------HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCc------chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 887888888999999999999999999654 566666666665554433 122222 22222222222222
Q ss_pred hhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHH
Q 009130 439 QWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVA 518 (543)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 518 (543)
..+..+.+.+|.+|.+.|+++.|+....+.+++. +.+.+.+.+.+.... ....++...|++.+++++++.++.
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~------~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWL------VAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHH------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2345668899999999999999999988888885 666666665443210 000014467888899999999988
Q ss_pred HHHhhcchhhhHHHHH
Q 009130 519 FLLFLRTRRFYNQVVI 534 (543)
Q Consensus 519 ~~~~~~~~~~~~~~~~ 534 (543)
+++.+|+|++..++.+
T Consensus 460 ~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 460 WKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHCCCCTTCCHHHHG
T ss_pred HheecCCCCCCHHHHH
Confidence 8889999998887754
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=9e-29 Score=258.32 Aligned_cols=408 Identities=10% Similarity=0.019 Sum_probs=260.2
Q ss_pred ccccHHHHhh-----cCCChhhHHHHHHHhhhccc-ccchhhHhhhh-cccccccccccccccCCchHHHHHHHHHHHHH
Q 009130 33 SIYSSTLKST-----QNYDQSTLERVAVFKDMGGS-AGILSGLLFSY-VTLNHHHHQTRTRFLRGPWVVHFTGAILCFTG 105 (543)
Q Consensus 33 ~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~-~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g 105 (543)
+.+.++++++ +|++..+.+++.+.+.++.. .+++.|+++|| +| ||+++..+.++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g---------------~r~~~~~~~~~~~~~ 98 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG---------------ARPAVFWGGVLIMLG 98 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------chHHHHHHHHHHHHH
Confidence 3445566666 99999999988777777776 78899999999 89 999999999999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CC--CcchhHHHHHhhhhhHHHHHHHHHHhc
Q 009130 106 YFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HY--SGTIVGILKGFVGLSGAVLTQVYKTVC 182 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~--rg~~~gi~~~~~~lg~~i~~~l~~~l~ 182 (543)
.++ ++++++ ++.+++.|+++|+|.+...+....+++|++| ++ |+.++++...+.++|..++|.+++.+.
T Consensus 99 ~~~-----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 99 HIV-----LALPFG---ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HHH-----HHSCCS---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHhhh---HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 999 777776 6889999999999999999999999999998 66 777888899999999999999999988
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhheec-cCCC----Ccc---cchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 009130 183 NGNPSTYILVLALLPTLVSLLFMSHVRI-YGTN----SVD---DKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARI 254 (543)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (543)
+..+|++.+....+..+++.+...+..+ ..++ +.+ .++........+..
T Consensus 171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------------------- 227 (491)
T 4aps_A 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA----------------------- 227 (491)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC-----------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH-----------------------
Confidence 7778988888776665555444333221 1110 000 00000000000000
Q ss_pred HHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchh------cccc-cccchhhcchhHHHhhc
Q 009130 255 ITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVT------AAFD-DKILKDEEDMNLLQAMC 327 (543)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~ 327 (543)
.....+.... ....+..+ .++..... .... .....+.......+..+
T Consensus 228 -l~~~~~~~~~-----~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 228 -VAGFIAIIVV-----MNLVGWNS--------------------LPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp -CHHHHHHHHH-----HHHHSSCC--------------------TTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred -HHHHHHHHHH-----HHhccCcc--------------------cccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 0000000000 00010000 00000000 0000 00000000000111122
Q ss_pred chhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130 328 TGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT 406 (543)
Q Consensus 328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~ 406 (543)
....+.+.+..++...........++.+.++ .+.+..+.+...++..+...++.++.|++.||++||+. .+...+..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~ 360 (491)
T 4aps_A 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVG 360 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHH
Confidence 2334444444444444444555667777765 47776778888889999999999999999999987642 223344455
Q ss_pred HHHHHHHHHHHhh----------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130 407 LVAMSIGHIAIAS----------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV 476 (543)
Q Consensus 407 ~~~~~i~~~~~~~----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~ 476 (543)
.++..++++++.. .+.....+..++.|++.+...+....++.|.+|+++++++.|+.+....+|.. ++|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~ 439 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNA 439 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6555555544331 13344566677888888888888899999999999999999999999999984 788
Q ss_pred hhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009130 477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRR 527 (543)
Q Consensus 477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 527 (543)
.+.+.+.|. + +...|.+.+++++++.++.+++.++.++
T Consensus 440 ~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 440 QLVTLYNAK-S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHGGGGGGS-S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHhcc-c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877664 2 6678888888877777776665544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=4.7e-28 Score=243.78 Aligned_cols=337 Identities=11% Similarity=-0.021 Sum_probs=251.1
Q ss_pred cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130 30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL 108 (543)
Q Consensus 30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~ 108 (543)
..+....|.+.+++|.++.+.+++.+...++.. .+++.|++.||+| ||+++..+.++.+++.++
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG---------------RRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC---------------CCCCCHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHHHHHHHHHHHHH
Confidence 445666788999999999999988777777775 7889999999999 999999999999999998
Q ss_pred HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130 109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS 187 (543)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~ 187 (543)
.+++++ ++.+++.|+++|++.+...+....++.|++| ++|++++++...+.++|..+++.+++.+.+..+|
T Consensus 82 -----~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 82 -----AVTTSS---LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred -----HHHhcc---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 455554 7899999999999999999999999999997 7899999999999999999999998887655456
Q ss_pred hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130 188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP 267 (543)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (543)
++.+....+..++.. ..
T Consensus 154 ~~~~~~~~~~~~~~~---------------------------------------------------------------~~ 170 (375)
T 2gfp_A 154 RACYLFLLVLCAGVT---------------------------------------------------------------FS 170 (375)
T ss_dssp HHHHHHHHHHHHHHH---------------------------------------------------------------CC
T ss_pred HHHHHHHHHHHHHHH---------------------------------------------------------------HH
Confidence 655544333222211 11
Q ss_pred cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130 268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA 347 (543)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~ 347 (543)
.....++++++++ + ++ +...+.++.+|+|.++...+..++.......
T Consensus 171 ~~~~~~~~~~~~~------------------~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
T 2gfp_A 171 MARWMPETRPVDA------------------P-----------RT----RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAA 217 (375)
T ss_dssp CCCSSCCCSTTTC------------------C-----------CC----CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcccCCCCc------------------c-----------cc----cHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 1111111100000 0 00 0011234667788899888888877777777
Q ss_pred hhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHH-HHHHHH--HHhh---c
Q 009130 348 TMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA-MSIGHI--AIAS---G 420 (543)
Q Consensus 348 ~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~-~~i~~~--~~~~---~ 420 (543)
+..+.|.+.++ .|+++.+++...+...++..+++++.+++.||++++ +..+... ...+.. .... .
T Consensus 218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2gfp_A 218 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPDWFGVM 289 (375)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--------HHHHHHHHHHTSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhccc
Confidence 77788888877 799999999999999999999999999999998542 2222222 222211 1111 2
Q ss_pred CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130 421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF 500 (543)
Q Consensus 421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~ 500 (543)
+....++..++.|++.+...+....++.|.+| ++++++.|+.+....+|.. ++|.+.|.+.|..+ |
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~~------------~ 355 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSAMLPQTGQ------------G 355 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCTHHHHHHH------------H
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHHHHhcCCc------------c
Confidence 33445566778899999888999999999998 8999999999999999984 88889999887655 7
Q ss_pred HHHHHHH
Q 009130 501 MLSFMIM 507 (543)
Q Consensus 501 ~~~f~~~ 507 (543)
+..+++.
T Consensus 356 ~~~~~~~ 362 (375)
T 2gfp_A 356 SLGLLMT 362 (375)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 7776654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=1.1e-25 Score=229.90 Aligned_cols=366 Identities=12% Similarity=0.014 Sum_probs=231.3
Q ss_pred cccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 009130 32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVW 110 (543)
Q Consensus 32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~ 110 (543)
++.+..++++++|+++.+.+++.+.+.++.. .+++.|+++||+| ||+++.++.++++++...+.
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G---------------rr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG---------------LRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST---------------TCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------chHHHHHHHHHHHHHHHHHH
Confidence 4455556788899999999977777666665 7889999999999 99999998887765332210
Q ss_pred HHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC---CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130 111 ASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG---HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS 187 (543)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp---~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~ 187 (543)
. ..+++.. ...+...+++.|++.+..++.......++.+ ++|+.+.|....+..+|.+++|.+++.+.+ ..|
T Consensus 92 ~--~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~ 166 (417)
T 2cfq_A 92 I--FIFGPLL--QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INN 166 (417)
T ss_dssp H--HTHHHHH--HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCS
T ss_pred H--HHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hch
Confidence 0 1111100 0112345677777777766655555556654 356888888888889999999988887753 234
Q ss_pred hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130 188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP 267 (543)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (543)
++.+.+..++.++.++ . .
T Consensus 167 ~~~f~~~~~~~~~~~~------------------------------------------------------------~-~- 184 (417)
T 2cfq_A 167 QFVFWLGSGCALILAV------------------------------------------------------------L-L- 184 (417)
T ss_dssp HHHHTTTTTTTTTHHH------------------------------------------------------------H-S-
T ss_pred hHHHHHHHHHHHHHHH------------------------------------------------------------H-H-
Confidence 4433322221111000 0 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130 268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA 347 (543)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~ 347 (543)
...+++++++. + + ++.++ + +++ +......++.++++.+|...+..+........
T Consensus 185 --~~~~~~~~~~~---~----~-------~~~~~-~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 185 --FFAKTDAPSSA---T----V-------ANAVG-A------NHS---AFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp --CSSCCCCSCSS---C----S-------SSSSS-S------CCC---CCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHcCccccccc---c----c-------ccccc-c------ccc---cccHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 00011100000 0 0 00000 0 000 00112346778899988777665544444444
Q ss_pred hhhchHHHHHhh-C---CCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCc
Q 009130 348 TMNNIAQVGESL-H---YSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFP 422 (543)
Q Consensus 348 ~~~~~~~~~~~~-g---~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~ 422 (543)
+..+.|.++++. + .+....+...++..++..++.++.|+++||+++| +.+..+.++.+++.+.+.. ++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~l~~~~~~~~~~~~~~~~~~~~ 312 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK------NALLLAGTIMSVRIIGSSFATSA 312 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH------HHHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH------HHHHHHHHHHHHHHHHHHHhccH
Confidence 455677776553 2 2234556777788888899999999999999654 5666666666666555553 333
Q ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHH-HhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhH
Q 009130 423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTI-SIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFM 501 (543)
Q Consensus 423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~ 501 (543)
..+.+..++.+++.+...+....+++|.+|++.+++++|.. +....+|+ .++|.+.|.+.|..| |+
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~-~~gp~l~G~l~~~~g------------~~ 379 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IFMSVLAGNMYESIG------------FQ 379 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH-HHHTHHHHTHHHHSH------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH-HHhhhhHHHHHHhcC------------cH
Confidence 44444555566666665666678999999999999999995 78888888 489999999998776 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 009130 502 LSFMIMAFVAFFGSLVAFLLFLR 524 (543)
Q Consensus 502 ~~f~~~~~~~~~~~i~~~~~~~~ 524 (543)
..|.+.+++.+++.++.++..++
T Consensus 380 ~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 380 GAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Confidence 89998888888887766554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=3.4e-24 Score=225.56 Aligned_cols=147 Identities=8% Similarity=-0.033 Sum_probs=123.4
Q ss_pred ccccHHHHhhcC------CChhhHHHHHHHhhhccc-ccchhhHhhhhc-ccccccccccccccCCchHHHHHHHHHHHH
Q 009130 33 SIYSSTLKSTQN------YDQSTLERVAVFKDMGGS-AGILSGLLFSYV-TLNHHHHQTRTRFLRGPWVVHFTGAILCFT 104 (543)
Q Consensus 33 ~~~~~~l~~~~~------~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~-g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~ 104 (543)
+.+.+++.+++| ++..+.+++.+.+.++.. ..++.|+++||+ | ||+++.++.++.++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g---------------~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG---------------KYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------chHHHHHHHHHHHH
Confidence 345567788899 999999977777777765 788999999999 9 99999999999999
Q ss_pred HHHHHHHHHhccCC-CCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHH---HHHhhhhhHHHHHHHHH
Q 009130 105 GYFLVWASVVGLLP-RPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGI---LKGFVGLSGAVLTQVYK 179 (543)
Q Consensus 105 g~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi---~~~~~~lg~~i~~~l~~ 179 (543)
+.++ .++++ + ++.+++.|++.|++.+...+....+++|++| ++|+++.+. ...+.++|.++++.+.+
T Consensus 98 ~~~~-----~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 98 GHAF-----LAIFEHS---VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHH-----HHHTSSC---HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHH-----HHHhccc---HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 66666 5 7889999999999999999999999999998 578877666 88999999999999988
Q ss_pred HhcCCCchhHHHHHHHHHHHHHH
Q 009130 180 TVCNGNPSTYILVLALLPTLVSL 202 (543)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~ 202 (543)
.+.+..+|++.+.+..+..+++.
T Consensus 170 ~l~~~~g~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 170 LLLKNFGAAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHH
Confidence 88776778887776665544443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.49 E-value=2.5e-13 Score=141.16 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=145.8
Q ss_pred hhHHHHHHHHHhhhchhhhhhhchHHHHHh------hCCCchhhHHHHHHHHHHHhhhccccccchhh-hhhhcCCCchH
Q 009130 329 GNFWFLCIATLCGMGSGIATMNNIAQVGES------LHYSTTEINSLISLWSIWNFFGRFGAGYGSDV-FLHKLGWARPI 401 (543)
Q Consensus 329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~-~~~~~~~~r~~ 401 (543)
+.+|.+.+..++.....+....+++.++++ +|.+..+.+++.+.+.++..+++++.|+++|| +||| +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------P 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------H
Confidence 346666666666666666676777777754 79999999999999999999999999999999 8654 7
Q ss_pred HHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc--hhhHHHHHHhhhhhhhhhhhhhh
Q 009130 402 FMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH--MGTIFNTISIACPVGSYICSVRI 478 (543)
Q Consensus 402 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~~~l 478 (543)
++..+.++..++.++.. .++...+++..++.|++.+...+...+++.|.+|+++ ++.+.+..+....+|. +++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 88888888888877776 4566778888999999999999999999999999988 7888888889999998 589999
Q ss_pred hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130 479 IGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL 523 (543)
Q Consensus 479 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 523 (543)
.+.+.+..+ |+..|++.++..+++.++.++..+
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999998876 999999988877777666555433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=1.1e-13 Score=142.00 Aligned_cols=178 Identities=16% Similarity=0.104 Sum_probs=143.9
Q ss_pred chhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH
Q 009130 328 TGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL 407 (543)
Q Consensus 328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~ 407 (543)
.+.++..++..+........+...+|.+.+++ .++.+.+++.+.+.++..++.+++|+++||+||| +++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHHHH
Confidence 34455555555555544455666678888889 9999999999999999999999999999999654 6788888
Q ss_pred HHHHHHHHHHhh-----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130 408 VAMSIGHIAIAS-----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI 482 (543)
Q Consensus 408 ~~~~i~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l 482 (543)
++.+++.++... ++...+++..++.|++.+...+...+++.|.+|+++|+.+.|+......+|. +++|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888777766543 4566788889999999999999999999999999999999999999999998 5889888888
Q ss_pred hhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130 483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR 524 (543)
Q Consensus 483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 524 (543)
.+..++ |+..|++.+++.++..++.++..++
T Consensus 179 ~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 179 MAWFND-----------WHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHTCC-----------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 776642 8899999888877776665555444
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=3.4e-13 Score=137.87 Aligned_cols=183 Identities=14% Similarity=0.080 Sum_probs=137.6
Q ss_pred HHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH
Q 009130 331 FWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM 410 (543)
Q Consensus 331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~ 410 (543)
+..+++.++.............|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+||| +.+..+.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHH
Confidence 3344444444443344455667888888999999999999999999999999999999999654 6788888888
Q ss_pred HHHHHHH---h-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhh-hh
Q 009130 411 SIGHIAI---A-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIY-DR 485 (543)
Q Consensus 411 ~i~~~~~---~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~-~~ 485 (543)
+++.++. . .++.+.+++..++.|++.+...+...+++.|.+|+++|+.+.|+.+....+|. +++|.+.+.+. +.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH-HHHHHHTTHHHHTS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 8877766 4 45667788889999999999999999999999999999999999999999998 48888888887 43
Q ss_pred ccCCCCc-------------cccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130 486 VASGEDH-------------TCYGTHCFMLSFMIMAFVAFFGSLVAFL 520 (543)
Q Consensus 486 ~g~~~~~-------------~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 520 (543)
.+...+. ......+|++.|++.++..++..++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3210000 0000112888888777766665555444
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.39 E-value=3e-12 Score=134.12 Aligned_cols=173 Identities=13% Similarity=0.157 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHhhhchhhhhhhchHHHHH-hhC------CCchhhHHHHHHHHHHHhhhccccccchhhh-hhhcCCCch
Q 009130 329 GNFWFLCIATLCGMGSGIATMNNIAQVGE-SLH------YSTTEINSLISLWSIWNFFGRFGAGYGSDVF-LHKLGWARP 400 (543)
Q Consensus 329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~-~~~~~~~r~ 400 (543)
+.+|.+.+..++.....+....+++.+++ ++| +++.+.+++.+.+.++..++.++.|+++||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 45666666666666666677777777765 578 9999999999999999999999999999999 765
Q ss_pred HHHHHHHHHHHHHHHHHh-hc-CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHH---HHhhhhhhhhhhh
Q 009130 401 IFMVITLVAMSIGHIAIA-SG-FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNT---ISIACPVGSYICS 475 (543)
Q Consensus 401 ~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~ig~~i~~ 475 (543)
+++..+.++..++.++.. .. +...+++..++.|++.+...+...+++.|.+|+++++++.+. ......+|. .++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS-FFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH-HHH
Confidence 567777777777776665 44 566677788899999999999999999999999999776665 788888888 488
Q ss_pred hhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130 476 VRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL 520 (543)
Q Consensus 476 ~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 520 (543)
|.+.+.+.+..+ |+..|++.+++.+++.++.++
T Consensus 165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHHHH
Confidence 889999988776 999999888877766655443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.35 E-value=1e-12 Score=131.47 Aligned_cols=172 Identities=9% Similarity=0.105 Sum_probs=136.7
Q ss_pred HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130 334 LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG 413 (543)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~ 413 (543)
+++..++.......+...+|.+.+++|.|+++.++..+...++..++.++.|+++||+||| +.+..+.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR------PVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHH
Confidence 3344444444444556667888888999999999999999999999999999999999765 4566677777776
Q ss_pred HHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCc
Q 009130 414 HIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDH 492 (543)
Q Consensus 414 ~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~ 492 (543)
.++.. .++...+++..++.|++.+...+...+++.|.+|+|+|+++.+.......+|. +++|.+.+.+.+..+
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~----- 152 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN----- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc-----
Confidence 66555 44566677788899999999999999999999999999999999999999998 589999999988776
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130 493 TCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR 524 (543)
Q Consensus 493 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 524 (543)
|+..|++.++..++..+...+..+|
T Consensus 153 -------~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 153 -------WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999998887777666543333333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.94 E-value=5.1e-09 Score=108.41 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-------------------hcCcch
Q 009130 364 TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-------------------SGFPGN 424 (543)
Q Consensus 364 ~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-------------------~~~~~~ 424 (543)
.+.+++.+.+.++.++|.+++|+++||+||| +.+.++.++..++.++.+ .++...
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence 4567788889999999999999999999654 788888888888776654 234456
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130 425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI 482 (543)
Q Consensus 425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l 482 (543)
+++..++.|++.|+..+..+.+++|..|+++|+...+.......+|.. .++.+....
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~ 185 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhh
Confidence 788999999999999999999999999999999999999888888773 555444333
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.89 E-value=1.4e-10 Score=117.85 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=110.6
Q ss_pred HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130 324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF 402 (543)
Q Consensus 324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~ 402 (543)
+.+|+|++|......++..........++|.++++ .|+|+.+.+.+.+...++..++++++|+++||+||| +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr------~~ 75 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR------KY 75 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTC------CH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HH
Confidence 35789999988887777666656667788888865 799999999999999999999999999999999765 44
Q ss_pred HHHHHHHHHHH---HHHHhh-cCc-chHHHHHHHHHhhhhhhhhhHHHHHHhhcCC--cchhhHHHHHHhhhhhhhhhhh
Q 009130 403 MVITLVAMSIG---HIAIAS-GFP-GNLFVGTMIVGVCYGSQWSLMPTITSEIFGV--RHMGTIFNTISIACPVGSYICS 475 (543)
Q Consensus 403 ~~~~~~~~~i~---~~~~~~-~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~ig~~i~~ 475 (543)
+..+.++..+. ...... ... ........+.+++.+..++.....+.+..++ ++++.++|.......+|. .++
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~ 154 (417)
T 2cfq_A 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALG 154 (417)
T ss_dssp HHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHH
Confidence 55444443321 111111 000 0112223333443333332222222232222 456777888888888887 488
Q ss_pred hhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130 476 VRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG 514 (543)
Q Consensus 476 ~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 514 (543)
|.+.+++.+. + |+..|++.++..++.
T Consensus 155 ~~l~~~l~~~-~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 155 ASIVGIMFTI-N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHHH-C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHh-c------------hhHHHHHHHHHHHHH
Confidence 8888988874 4 788888766554433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.66 E-value=4.7 Score=20.81 Aligned_cols=12 Identities=8% Similarity=-0.144 Sum_probs=6.2
Q ss_pred ccccccCCchHH
Q 009130 83 TRTRFLRGPWVV 94 (543)
Q Consensus 83 ~~~~~~~g~r~~ 94 (543)
|||+.|+|||..
T Consensus 4 gklikkfgrkai 15 (26)
T 2g9p_A 4 GKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHTSHHH
T ss_pred HHHHHHHhHHHH
Confidence 444444448754
Done!