BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009132
(542 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana
GN=At4g19900 PE=2 SV=1
Length = 644
Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/559 (54%), Positives = 377/559 (67%), Gaps = 85/559 (15%)
Query: 13 YGAQVCALIAALLLLLSVSLLHTRLS-----QPNQILRHHQLASDDAVFIDPLL-SDSD- 65
+GAQ CA+++A+LLL SVSLL+TRLS PN + + D +F D +L SDSD
Sbjct: 11 HGAQACAVMSAVLLLASVSLLYTRLSLFSSHSPNHL--RSGSSEDTVLFPDSVLVSDSDV 68
Query: 66 --------DSNDNNVDKIDELDTLDDNDVVVDNEEKPK---------------MSSSSYY 102
S + D+IDE D ++D V + E++ + SSS +Y
Sbjct: 69 ETTGGGGRGSTTSTEDRIDEHDDAIEDDGVSNEEDENQDAEQEQEVDLNRNKAASSSGFY 128
Query: 103 FDHLSGSIRRAFNKRSIDDWDFDYSGFTTLQSNVEDKS-KTAFGSDDFPVDDEVRRKMTL 161
FDH++G IRRAFNKRSID+WD+DY+GF+ + DKS + AFGSDD P+D+ +RRK+
Sbjct: 129 FDHVNGVIRRAFNKRSIDEWDYDYTGFSIDSDSSGDKSSRAAFGSDDVPLDESIRRKIVE 188
Query: 162 VKDIEDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDG 221
V +EDALLLK+GK SPLR+ WG+WFDKKG+FLRRD+MFKS++E LNP+NNP+LQDPD
Sbjct: 189 VTSVEDALLLKSGKKVSPLRQGWGDWFDKKGDFLRRDRMFKSNIETLNPLNNPMLQDPDS 248
Query: 222 VGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLN-FRGNGREELGRRSEIKR 280
VG +GLTRGDKV+QK LN+ K PF+ KKPL V+ N FR L EIKR
Sbjct: 249 VGNTGLTRGDKVVQKWRLNQIKRNPFMAKKPLSVVSEKKEPNEFRL-----LSSVGEIKR 303
Query: 281 AERRTLDDSVNNESYSKRVNNEEHVKDESSGNATGELYDKEVNDSNKYLSARGNESSKTD 340
ER+TLD N+E ++ E N E
Sbjct: 304 GERKTLD-------------NDEKIEREEQKNVESE------------------------ 326
Query: 341 EAVRDSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWN 400
+ +E + H+YADG +WGYYPG+ P LSFS+FMD+FFRK KC MRVFMVWN
Sbjct: 327 ---------RKHDEVTEHMYADGTKWGYYPGIEPSLSFSDFMDSFFRKEKCSMRVFMVWN 377
Query: 401 SPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELL 460
SP WM+SVRHQRGLES+L HRDACVVVFSET+ELDFF++SFVKD +KVAVAMPNLDELL
Sbjct: 378 SPGWMFSVRHQRGLESLLSQHRDACVVVFSETVELDFFRNSFVKDSYKVAVAMPNLDELL 437
Query: 461 KDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVG 520
+DTP H FASVWF+WRKTKFY THYSELVRLAALYKYGG+Y+DSD+IVL SLSSL N++G
Sbjct: 438 QDTPTHVFASVWFDWRKTKFYPTHYSELVRLAALYKYGGVYLDSDVIVLGSLSSLRNTIG 497
Query: 521 MEDKFPGSSLNGAVMAFRK 539
MED+ G SLNGAVM+F K
Sbjct: 498 MEDQVAGESLNGAVMSFEK 516
>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus
GN=A4galt PE=1 SV=1
Length = 360
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 21/142 (14%)
Query: 413 GLESVLFHHRDACVVVFSETIELDFFKDSFVKD-GFKVAVAMPN-------LDELLKDTP 464
+ES H ++ VVV + + D ++ ++ G + PN L EL +DTP
Sbjct: 104 SVESAARAHPESQVVVLMKGLPRD--TTAWPRNLGISLLSCFPNVQIRPLDLQELFEDTP 161
Query: 465 AHEFASVWF---EWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGM 521
+ W+ + R + S+ R+A L+K+GGIY+D+D IVLK+L +L N +G+
Sbjct: 162 L----AAWYLEAQHRWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGI 217
Query: 522 EDKFPGSSLNGAVMAF-RKHRY 542
+ ++ LNGA +AF RKH +
Sbjct: 218 QSRY---VLNGAFLAFERKHEF 236
>sp|Q67BJ4|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus
GN=A4galt PE=2 SV=1
Length = 359
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Query: 455 NLDELLKDTP-AHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLS 513
+L EL +DTP A ++ W + S+ R+A L+K+GGIY+D+D IVLK+L
Sbjct: 151 DLQELFEDTPLAAWYSEARHRWEPYQL--PVLSDASRIALLWKFGGIYLDTDFIVLKNLL 208
Query: 514 SLNNSVGMEDKFPGSSLNGAVMAF-RKHRY 542
+L N++G++ ++ LNGA +AF RKH +
Sbjct: 209 NLTNTLGIQSRY---VLNGAFLAFERKHEF 235
>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens
GN=A4GALT PE=2 SV=1
Length = 353
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Query: 455 NLDELLKDTP-AHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLS 513
+L EL +DTP A +A+V W + S+ R+A ++K+GGIY+D+D IVLK+L
Sbjct: 145 DLRELFRDTPLADWYAAVQGRWEP--YLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLR 202
Query: 514 SLNNSVGMEDKFPGSSLNGAVMAF-RKHRY 542
+L N +G + ++ LNGA +AF R+H +
Sbjct: 203 NLTNVLGTQSRY---VLNGAFLAFERRHEF 229
>sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes
GN=A4GALT PE=3 SV=1
Length = 353
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Query: 455 NLDELLKDTP-AHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLS 513
+L EL +DTP A +A+V W + S+ R+A ++K+GGIY+D+D IVLK+L
Sbjct: 145 DLRELFQDTPLADWYAAVQGRWEP--YLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLR 202
Query: 514 SLNNSVGMEDKFPGSSLNGAVMAF-RKHRY 542
+L N +G + ++ LNGA +AF R+H +
Sbjct: 203 NLTNVLGTQSRY---VLNGAFLAFERRHEF 229
>sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment)
OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1
Length = 327
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 455 NLDELLKDTP-AHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLS 513
+L EL +DTP A +A+V W + S+ R+A ++K+GGIY+D+D IVLK+L
Sbjct: 119 DLRELFRDTPLADWYAAVQGRWEP--YLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLR 176
Query: 514 SLNNSVGMEDKFPGSSLNGAVMAF-RKHRY 542
+L N +G + ++ LNGA +AF R H +
Sbjct: 177 NLTNVLGTQSRY---VLNGAFLAFERXHEF 203
>sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo
pygmaeus GN=A4GALT PE=3 SV=1
Length = 218
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 455 NLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSS 514
+L EL +DTP ++ + + R + S+ R+A ++K+GGIY+D+D IVLK+L +
Sbjct: 10 DLRELFRDTPLADWYTA-VQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLRN 68
Query: 515 LNNSVGMEDKFPGSSLNGAVMAF-RKHRY 542
L N +G + ++ LNGA +AF R+H +
Sbjct: 69 LTNVLGTQSRY---VLNGAFLAFQRRHEF 94
>sp|Q10323|IMT3_SCHPO Inositol phosphoceramide mannosyltransferase 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17G8.11c PE=1 SV=1
Length = 356
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 459 LLKDTPAHEFASVWFEWRKTKF----YNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSS 514
L D EF + + W T++ YN +++VR LYKYGGIY+D D+ ++L
Sbjct: 92 LWTDESMREFIATDYPWFLTQYDSYPYNIERADVVRYFILYKYGGIYLDLDVGCNRTLDP 151
Query: 515 LNNSVGMEDKFPGSSLNGAVMAFRK 539
L + + S ++ VM F K
Sbjct: 152 LLHYPAWVRRTSPSGISNNVMGFAK 176
>sp|Q9UNA3|A4GCT_HUMAN Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo sapiens GN=A4GNT
PE=2 SV=1
Length = 340
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 48/168 (28%)
Query: 407 SVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKV---------------AV 451
S + +GLE++L H R + SE +E V+ K+ +
Sbjct: 35 SFKSHQGLEALLSHRRGIVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDST 94
Query: 452 AMPN----------------------LDELLKDTPAHEF-----ASVWFEWRKTKFYNTH 484
MP+ + LL+DTP + AS W
Sbjct: 95 PMPSNSTYPAFSFLSAIDNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHIS----- 149
Query: 485 YSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGMEDKFPGSSLNG 532
S+ RLA ++KYGGIYMD+D+I ++ + N ++ + + G
Sbjct: 150 -SDASRLAIIWKYGGIYMDTDVISIRPIPEENFLAAQASRYSSNGIFG 196
>sp|Q2SRU7|TRMD_MYCCT tRNA (guanine-N(1)-)-methyltransferase OS=Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 /
NCTC 10154) GN=trmD PE=3 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 110 IRRAFNKRSIDDWDFDYSGFTTLQSNVEDKSKTAFGSDDFPVDDEVRRKMTLVKDIEDAL 169
I+RA NK++I D F+TL N D + GS + + + + + VK + +
Sbjct: 22 IKRAINKQAIQIEIIDLRNFSTLNHNQVDDYQYGGGSGMVLMIEPLIKAIESVKTTKSIV 81
Query: 170 LLKTGKGKS 178
LL T +GK+
Sbjct: 82 LLTTPQGKT 90
>sp|P72097|LST_NEIMB CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase OS=Neisseria meningitidis serogroup
B (strain MC58) GN=lst PE=1 SV=1
Length = 371
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 49 LASDDAVFIDPLLSDSDDSNDNNVDKIDELDTLDDNDVVVDNEEKPKMSSSSYYFDHLS- 107
LAS + V I LS D+ E+ T DD + + SSSY D S
Sbjct: 140 LASLEKVSIAAFLSTYPDA---------EIKTFDDGTGNL-------IQSSSYLGDEFSV 183
Query: 108 -GSIRRAFNKRSIDDWDFDYSGFTTLQSNVEDKSKTAFGSDDFPVDDEVRRKMTLVKDIE 166
G+I+R F + I DW + N D+ T F +DD RRKMT + +
Sbjct: 184 NGTIKRNFARMMIGDWSIAKT------RNASDEHYTIFKGLKNIMDDG-RRKMTYL-PLF 235
Query: 167 DALLLKTG 174
DA LKTG
Sbjct: 236 DASELKTG 243
>sp|B7IG41|ATPD_THEAB ATP synthase subunit delta OS=Thermosipho africanus (strain TCF52B)
GN=atpH PE=3 SV=1
Length = 183
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 437 FFKDSFVKDGFKVAVAMPNLDELLKDTPAHEF---ASVWFEWRKTKFYNTHYSELVRLAA 493
FF + VK K V +E+ K++P F ++ FE ++ KF + ++ A
Sbjct: 44 FFNNPIVKPEQKTLVIKQAFEEVFKESPGEAFLNFINIVFENKREKF-------IPQMQA 96
Query: 494 LYKYGGIYMDSDIIV 508
LYKY I +++ I+V
Sbjct: 97 LYKYAAIDIENKILV 111
>sp|Q7N799|RIMM_PHOLL Ribosome maturation factor RimM OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=rimM PE=3 SV=1
Length = 185
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 72 VDKIDELDTLDDNDVVVDNEEKPKMSSSSYYFDHLSGS 109
+D +D ++L + +++VD+E+ P++ + YY+ L G
Sbjct: 80 IDDLDAANSLTNCEIIVDSEQLPELDTGDYYWKDLIGC 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,685,751
Number of Sequences: 539616
Number of extensions: 9437957
Number of successful extensions: 36220
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 35889
Number of HSP's gapped (non-prelim): 401
length of query: 542
length of database: 191,569,459
effective HSP length: 122
effective length of query: 420
effective length of database: 125,736,307
effective search space: 52809248940
effective search space used: 52809248940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)