Query 009132
Match_columns 542
No_of_seqs 153 out of 680
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 20:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1928 Alpha-1,4-N-acetylgluc 100.0 2.8E-46 6E-51 383.6 11.2 275 185-541 3-284 (409)
2 PF04488 Gly_transf_sug: Glyco 99.8 2.6E-19 5.6E-24 152.2 7.9 94 407-516 1-97 (103)
3 PF05704 Caps_synth: Capsular 99.7 5.6E-17 1.2E-21 161.4 10.3 125 390-541 43-176 (276)
4 COG3774 OCH1 Mannosyltransfera 99.2 2.7E-12 5.9E-17 132.6 2.9 120 390-541 81-204 (347)
5 PF12919 TcdA_TcdB: TcdA/TcdB 98.3 1.8E-06 3.8E-11 94.0 8.2 41 392-434 1-41 (514)
6 cd02537 GT8_Glycogenin Glycoge 93.0 0.18 3.9E-06 49.3 5.5 41 500-540 94-138 (240)
7 cd06429 GT8_like_1 GT8_like_1 91.1 1.1 2.3E-05 45.3 8.6 51 485-539 99-159 (257)
8 PRK15171 lipopolysaccharide 1, 90.2 0.75 1.6E-05 47.8 6.8 97 406-517 36-142 (334)
9 cd06431 GT8_LARGE_C LARGE cata 88.8 1.1 2.5E-05 45.6 6.8 99 404-517 10-119 (280)
10 cd04194 GT8_A4GalT_like A4GalT 84.9 3.4 7.4E-05 39.9 7.4 96 407-517 12-117 (248)
11 cd06432 GT8_HUGT1_C_like The C 84.7 2.9 6.3E-05 41.7 7.0 106 394-517 2-117 (248)
12 cd00505 Glyco_transf_8 Members 84.6 0.55 1.2E-05 45.6 1.9 120 406-540 12-163 (246)
13 PF01501 Glyco_transf_8: Glyco 83.4 0.8 1.7E-05 42.5 2.3 41 500-540 103-168 (250)
14 cd06914 GT8_GNT1 GNT1 is a fun 75.4 1.9 4.1E-05 44.4 2.3 40 499-540 95-139 (278)
15 PLN00176 galactinol synthase 68.3 4.2 9.1E-05 43.1 2.9 29 489-517 105-134 (333)
16 PLN02718 Probable galacturonos 65.5 11 0.00024 43.1 5.6 115 395-517 314-439 (603)
17 PLN02829 Probable galacturonos 65.4 18 0.00038 41.7 7.2 35 483-517 440-478 (639)
18 COG1442 RfaJ Lipopolysaccharid 63.6 17 0.00037 38.5 6.3 93 410-517 17-119 (325)
19 PLN02910 polygalacturonate 4-a 51.8 40 0.00086 39.1 7.0 35 483-517 458-496 (657)
20 cd06430 GT8_like_2 GT8_like_2 50.2 7 0.00015 41.1 0.9 30 488-517 85-118 (304)
21 PF10587 EF-1_beta_acid: Eukar 42.9 15 0.00034 26.6 1.4 15 143-157 1-15 (28)
22 PLN02659 Probable galacturonos 41.5 13 0.00028 42.0 1.3 35 483-517 327-365 (534)
23 PLN02870 Probable galacturonos 40.6 14 0.0003 41.8 1.3 34 484-517 327-364 (533)
24 PLN02867 Probable galacturonos 37.8 16 0.00034 41.4 1.2 33 485-517 330-366 (535)
25 PLN02523 galacturonosyltransfe 35.6 18 0.00039 41.1 1.3 34 484-517 361-398 (559)
26 PRK15383 type III secretion sy 35.4 1E+02 0.0022 32.7 6.4 55 486-540 190-267 (335)
27 PF01484 Col_cuticle_N: Nemato 33.4 44 0.00095 25.3 2.7 30 13-42 4-33 (53)
28 PLN02769 Probable galacturonos 32.4 22 0.00048 41.0 1.3 34 484-517 436-473 (629)
29 PLN02742 Probable galacturonos 26.7 33 0.00071 39.0 1.4 116 387-517 249-374 (534)
30 PRK15382 non-LEE encoded effec 25.3 66 0.0014 33.9 3.2 55 486-540 182-259 (326)
31 PF15240 Pro-rich: Proline-ric 25.0 40 0.00086 33.5 1.5 11 24-34 2-12 (179)
32 PF10498 IFT57: Intra-flagella 21.9 98 0.0021 33.4 3.8 34 6-42 91-124 (359)
33 PRK15384 type III secretion sy 21.8 82 0.0018 33.3 3.1 55 486-540 187-264 (336)
No 1
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-46 Score=383.60 Aligned_cols=275 Identities=32% Similarity=0.433 Sum_probs=222.0
Q ss_pred hhhhccchhhhhccccccccccccCCCCCCCCCCCCCCCcccccchhHHHHHHHHhhhcccccccCCCCccccCCCCccc
Q 009132 185 GEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNF 264 (542)
Q Consensus 185 ~~w~~~~~~~l~~~~m~~~~~~~~np~nnp~lqdpd~~~~t~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (542)
++|+||+++++|++||+||+.+ |++.++|||||||+++ |.|+.+++++ +..+.||+.++++++....
T Consensus 3 ~~~~~~~~~~~~~~rl~~s~~~-l~~~~~~~~~~~~~~~-~~l~~~~~v~------~~~~~~~~~~~i~~~~~~~----- 69 (409)
T KOG1928|consen 3 HDITDKVLLVLDLRRLNRSGSS-LFTAFAPMLLDLDSVT-TLLVSNLSVV------RDFSPPFVLIEILSVVPSL----- 69 (409)
T ss_pred CchhhhhhhhHhHHHHhhcccc-cchhhhhhhhhhceee-EEEEccceee------eccCCcceEEEeccccccc-----
Confidence 7899999999999999999999 9999999999999999 9999999998 6678899999999987642
Q ss_pred CCCCccccchhhhhHHhhhhccccccccccccccccccccccccCCCCcccccchhhccchhhhhhccCCCCCchhhhhh
Q 009132 265 RGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNNEEHVKDESSGNATGELYDKEVNDSNKYLSARGNESSKTDEAVR 344 (542)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (542)
+.....+.+-.++-.. .++....+ +.|- .+ +
T Consensus 70 ~~~~e~~~~~~~~~~~----~~~q~~~~-------------~~e~-----~~-------------------------l-- 100 (409)
T KOG1928|consen 70 PVSNEFELLFSVGRSL----SLKQKTTV-------------NGEK-----IE-------------------------L-- 100 (409)
T ss_pred cccchhhhhcchhhhh----hheeeeee-------------cccc-----ch-------------------------h--
Confidence 1122222222222000 00000000 0000 00 0
Q ss_pred hhhhhhcccccccccccCCccccccCCCCCCcChhhhhhhhcccccccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCC
Q 009132 345 DSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDA 424 (542)
Q Consensus 345 ~~~~~~~~~e~~~~~~~d~~~wg~y~g~~~sl~Fs~~~~iFF~etsC~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~ 424 (542)
.+-..++|-.++.+|+.++..||..+ |+.+|||+|+|+++.++.||+|+|||++++||++
T Consensus 101 -------------------~e~~~~~s~~~~~sf~~~~~~~~~~~-c~~~~fm~w~S~~~~f~~r~~~sIESa~k~hP~~ 160 (409)
T KOG1928|consen 101 -------------------QELENLSSELKSPSFQSRVNSFFRKE-CSVRFFMTWISPAESFGVREMCSIESAFKTHPEG 160 (409)
T ss_pred -------------------hheeeccccccCcccCCCcchhhccC-CceeEEEEecccccCCChhhhhhhHHHHhhCCCc
Confidence 11233555566799999999999987 9999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcc---cccchhhhcccceeeecCChhhhhcCCChhhhhhhHHhhh---ccCCcchhhhhHHHHHHHHhcC
Q 009132 425 CVVVFSETIELD---FFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWR---KTKFYNTHYSELVRLAALYKYG 498 (542)
Q Consensus 425 eViVLsetl~ld---~fk~pFLkegYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~---ks~y~~~HlSDlLRl~vLYKYG 498 (542)
||+|++++.+.. ....+|+..+|++..+.+|++.++++||.+.|+..|+.|+ ..++..+|+||++|+++|||||
T Consensus 161 cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYG 240 (409)
T KOG1928|consen 161 CVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYG 240 (409)
T ss_pred eEEEEEccccCCCCccccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhC
Confidence 999999875442 2233788999999999999999999999999999999886 4556678899999999999999
Q ss_pred ceEEeCCceEecccchhccccc-cccCCCCCCccccEEEEecCC
Q 009132 499 GIYMDSDIIVLKSLSSLNNSVG-MEDKFPGSSLNGAVMAFRKHR 541 (542)
Q Consensus 499 GIYLDlDVIvlKPLd~LlNfvG-~E~s~~~~~LnNAVMaFeKgH 541 (542)
|||||||||++|++..++|.|| .+.+..|.++|||||+|+++|
T Consensus 241 GvYLDTDvIvLksl~~l~N~ig~~~~~~~~~~lnnavl~F~k~H 284 (409)
T KOG1928|consen 241 GVYLDTDVIVLKSLSNLRNVIGVDPATQAWTRLNNAVLIFDKNH 284 (409)
T ss_pred CEEeeccEEEecccccccccccccchhhHHHhhcCceeecCCCC
Confidence 9999999999999999999999 555456899999999999999
No 2
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=99.78 E-value=2.6e-19 Score=152.23 Aligned_cols=94 Identities=32% Similarity=0.543 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHHCCCCEEEEEeCCCCcccccchhhhcccceeeecCChhhhhcCCChhhhhhhHH-hhhc-cCCcchh
Q 009132 407 SVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWF-EWRK-TKFYNTH 484 (542)
Q Consensus 407 ~~RqaCAVESAARhNPD~eViVLsetl~ld~fk~pFLkegYNV~Vv~pDL~eLfkGTPLe~f~~~W~-kw~k-s~y~~~H 484 (542)
|.+++|+|+||+++||+|++++|+++.. |+.+..+|+..++.++|. +.. ++ ++.. .....+|
T Consensus 1 P~~~~~~i~s~~~~nP~~~~~~~~d~~~-------------~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~~~~~~~~~ 64 (103)
T PF04488_consen 1 PERFQCSIESWARHNPDYEYILWTDESD-------------NVRVKRIDIEFLFEKTPW--FLE-LYNKWEPGRYPNYAH 64 (103)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCc-------------chhhhHHHHHHHHhCChH--HHH-HHhhhhcccccchHH
Confidence 5789999999999999999999998843 444566778888888882 211 22 2221 2345789
Q ss_pred hhhHHHHHHHHhcCceEEeCCceEeccc-chhc
Q 009132 485 YSELVRLAALYKYGGIYMDSDIIVLKSL-SSLN 516 (542)
Q Consensus 485 lSDlLRl~vLYKYGGIYLDlDVIvlKPL-d~Ll 516 (542)
.||++|+++||+|||||+|+|++|+||+ +.+.
T Consensus 65 ~sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 65 KSDLLRYLVLYKYGGIYLDLDVICLRPLDDPWL 97 (103)
T ss_pred HHHHHHHHHHHHcCcEEEeCccccCcchhhhhh
Confidence 9999999999999999999999999999 7664
No 3
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=99.70 E-value=5.6e-17 Score=161.37 Aligned_cols=125 Identities=23% Similarity=0.359 Sum_probs=96.3
Q ss_pred cccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCCCcccccchhhhcccceeeecCChhhhhcCCChhhhh
Q 009132 390 KCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFA 469 (542)
Q Consensus 390 sC~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl~ld~fk~pFLkegYNV~Vv~pDL~eLfkGTPLe~f~ 469 (542)
+..+.||+||.+|.+++|..++.|++||.+++|+++|+++++. +. . .|+ +-|-.
T Consensus 43 ~~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~-Ni---~-~Yv------------------~~P~~--- 96 (276)
T PF05704_consen 43 TNEKIIWVCWWQGEENAPEIVKKCINSWRKNAPDYEVILLTED-NI---K-DYV------------------DIPDF--- 96 (276)
T ss_pred CCCCcEEEEECCCccccCHHHHHHHHHHHHHCCCCeEEEEChH-HH---H-HHc------------------CCchh---
Confidence 4556799999999999999999999999999999999999865 22 1 232 11211
Q ss_pred hhHHhhhccCCcchhhhhHHHHHHHHhcCceEEeCCceEecccchhcc---ccccccCC------CCCCccccEEEEecC
Q 009132 470 SVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNN---SVGMEDKF------PGSSLNGAVMAFRKH 540 (542)
Q Consensus 470 ~~W~kw~ks~y~~~HlSDlLRl~vLYKYGGIYLDlDVIvlKPLd~LlN---fvG~E~s~------~~~~LnNAVMaFeKg 540 (542)
.+.++.++....+|.||++|+.+|++|||||||+++++.+||+.... +....... .....+|.+|++.|+
T Consensus 97 -i~~k~~~g~i~~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~~~~~ff~~~~~~~~~~~~~~~~w~~~fi~a~~~ 175 (276)
T PF05704_consen 97 -ILEKYEKGKISPAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEIFDSDFFSFSRPDKDYNPISISSWTNFFIAAKKG 175 (276)
T ss_pred -HHHHHHcCCCchhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHHhcCCeeEEeccCcCcccchHHHhHhhheeECCC
Confidence 13466777889999999999999999999999999999999998742 33331111 123457779999998
Q ss_pred C
Q 009132 541 R 541 (542)
Q Consensus 541 H 541 (542)
|
T Consensus 176 n 176 (276)
T PF05704_consen 176 N 176 (276)
T ss_pred C
Confidence 7
No 4
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=2.7e-12 Score=132.61 Aligned_cols=120 Identities=17% Similarity=0.334 Sum_probs=90.5
Q ss_pred cccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCCCcccccchhhhcccceeeecCChhhhhcCCChhhhh
Q 009132 390 KCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFA 469 (542)
Q Consensus 390 sC~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl~ld~fk~pFLkegYNV~Vv~pDL~eLfkGTPLe~f~ 469 (542)
.-.+.||++|.+.. +|.....+..+|..+||+++.++|++... + +|+...|. +++
T Consensus 81 ~IPk~IwQTw~~~~--~P~~~~~~~~~~~~~~PdY~yi~~tD~~~-~----~~v~h~~~------------------~~~ 135 (347)
T COG3774 81 AIPKIIWQTWSNEK--FPEYVNKLFNRWRSLHPDYRYILWTDEMR-E----PLVEHDYP------------------WFL 135 (347)
T ss_pred hHHHHHHHHhcCCC--CCHHHHHHHHHHHhcCCCeEEEecchhhh-h----HHHhhccH------------------HHH
Confidence 34578999999988 89999999999999999999999987632 1 34433331 111
Q ss_pred hhHHhhhccCCcchhhhhHHHHHHHHhcCceEEeCCceEecccchhc-c---ccccccCCCCCCccccEEEEecCC
Q 009132 470 SVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLN-N---SVGMEDKFPGSSLNGAVMAFRKHR 541 (542)
Q Consensus 470 ~~W~kw~ks~y~~~HlSDlLRl~vLYKYGGIYLDlDVIvlKPLd~Ll-N---fvG~E~s~~~~~LnNAVMaFeKgH 541 (542)
. .++.-++ ..-.+|++||.+||+|||||+|+|..|+++++++. + ++.... ...++|.||++.|+|
T Consensus 136 ~---ay~~yp~-~~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~~---~~~v~n~~m~s~p~h 204 (347)
T COG3774 136 D---AYRRYPY-GALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRTI---PLGVGNGVMGSAPGH 204 (347)
T ss_pred H---HHHccCc-chhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhcC---CCcccchhhccCCCC
Confidence 1 1221122 23389999999999999999999999999999997 3 333333 358999999999988
No 5
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=98.28 E-value=1.8e-06 Score=93.96 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=30.9
Q ss_pred cceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCCC
Q 009132 392 DMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE 434 (542)
Q Consensus 392 ~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl~ 434 (542)
+++|||+|.+|. +|..|...|..|..+||||+|.+|.++..
T Consensus 1 eK~iH~iWigG~--~~~~~~~Yik~w~~~n~dy~~~lW~D~~a 41 (514)
T PF12919_consen 1 EKNIHFIWIGGA--PPDIQRDYIKTWKDTNPDYTINLWYDSNA 41 (514)
T ss_dssp -SEEEEE--SS-----HHHHHHHHHHHHHTTTSEEEEEE-TT-
T ss_pred CCeEEEEEeCCC--CchhHHHHHHHHHHHCCCCEEEEEECchH
Confidence 368999999988 69999999999999999999999987543
No 6
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=92.99 E-value=0.18 Score=49.27 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=30.4
Q ss_pred eEEeCCceEecccchhccc---cccc-cCCCCCCccccEEEEecC
Q 009132 500 IYMDSDIIVLKSLSSLNNS---VGME-DKFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 500 IYLDlDVIvlKPLd~LlNf---vG~E-~s~~~~~LnNAVMaFeKg 540 (542)
+|||+|++++++++.|.+. +++. +......+|.|||.+++.
T Consensus 94 lylD~D~~v~~~i~~Lf~~~~~~~a~~d~~~~~~fNsGv~l~~~~ 138 (240)
T cd02537 94 VFLDADTLVLRNIDELFDLPGEFAAAPDCGWPDLFNSGVFVLKPS 138 (240)
T ss_pred EEEeCCeeEccCHHHHhCCCCceeeecccCccccccceEEEEcCC
Confidence 6999999999999999753 3322 211125799999999875
No 7
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=91.07 E-value=1.1 Score=45.33 Aligned_cols=51 Identities=29% Similarity=0.378 Sum_probs=35.0
Q ss_pred hhhHHHHHHHH---hc-CceEEeCCceEecccchhccc------cccccCCCCCCccccEEEEec
Q 009132 485 YSELVRLAALY---KY-GGIYMDSDIIVLKSLSSLNNS------VGMEDKFPGSSLNGAVMAFRK 539 (542)
Q Consensus 485 lSDlLRl~vLY---KY-GGIYLDlDVIvlKPLd~LlNf------vG~E~s~~~~~LnNAVMaFeK 539 (542)
.+-+.|+.+=- .+ ==+|||+|++|.++|.+|++. +|+-. .++|.|||.+.-
T Consensus 99 ~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~----dyfNsGV~linl 159 (257)
T cd06429 99 LLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVE----TSWNPGVNVVNL 159 (257)
T ss_pred HHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEh----hhcccceEEEeH
Confidence 46677877622 22 238999999999999999752 33222 168999998764
No 8
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=90.17 E-value=0.75 Score=47.77 Aligned_cols=97 Identities=22% Similarity=0.335 Sum_probs=58.5
Q ss_pred CcHHHHHHHHHHHHHCCC--CEEEEEeCCCCccccc--chhhhc-ccceeeecCChhhhhcCCChhhhhhhHHhhhccCC
Q 009132 406 YSVRHQRGLESVLFHHRD--ACVVVFSETIELDFFK--DSFVKD-GFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (542)
Q Consensus 406 L~~RqaCAVESAARhNPD--~eViVLsetl~ld~fk--~pFLke-gYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~ks~y 480 (542)
+-+--.-+|-|+..+||+ .+++|++++....... ..+... +.+|.+..+|... +.+.|...
T Consensus 36 y~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~-~~~~~~~~------------- 101 (334)
T PRK15171 36 FLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCER-LKSLPSTK------------- 101 (334)
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHH-HhCCcccC-------------
Confidence 555567789999999998 5677777654322111 012211 2367777777553 34444210
Q ss_pred cchhhhhHHHHHHHHhcCc-----eEEeCCceEecccchhcc
Q 009132 481 YNTHYSELVRLAALYKYGG-----IYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 481 ~~~HlSDlLRl~vLYKYGG-----IYLDlDVIvlKPLd~LlN 517 (542)
....+=+.|+.+---... +|||+|++|..+|++|++
T Consensus 102 -~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~ 142 (334)
T PRK15171 102 -NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELID 142 (334)
T ss_pred -cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHh
Confidence 112445667754333332 799999999999999964
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=88.80 E-value=1.1 Score=45.56 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHHHHHCC-CCEEEEEeCCCCcccccchhhh--cccceeeecCChhhhhcCCChhhhhhhHHhhhccCC
Q 009132 404 WMYSVRHQRGLESVLFHHR-DACVVVFSETIELDFFKDSFVK--DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (542)
Q Consensus 404 ~~L~~RqaCAVESAARhNP-D~eViVLsetl~ld~fk~pFLk--egYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~ks~y 480 (542)
.++.+.-.-+|.|+..++. ..+++|++++....... .+.+ ..+++.+..+++..+..... |.
T Consensus 10 ~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~-~l~~~~~~~~~~i~f~~i~~~~~~~~----------~~---- 74 (280)
T cd06431 10 YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILA-TLFQTWMVPAVEVSFYNAEELKSRVS----------WI---- 74 (280)
T ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHH-HHHHhccccCcEEEEEEhHHhhhhhc----------cC----
Confidence 4555666789999988864 37888888764332222 2221 23455555555544332110 10
Q ss_pred cchhhhhH---HHHHHHHhcC-----ceEEeCCceEecccchhcc
Q 009132 481 YNTHYSEL---VRLAALYKYG-----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 481 ~~~HlSDl---LRl~vLYKYG-----GIYLDlDVIvlKPLd~LlN 517 (542)
...|.+-+ .|+.+---.. =+|||+|++|..++..|++
T Consensus 75 ~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~ 119 (280)
T cd06431 75 PNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWK 119 (280)
T ss_pred cccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHH
Confidence 01133333 6877644343 3799999999999999875
No 10
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=84.92 E-value=3.4 Score=39.86 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHHCC--CCEEEEEeCCCCccc---ccchhhh-cccceeeecCChhhhhcCCChhhhhhhHHhhhccCC
Q 009132 407 SVRHQRGLESVLFHHR--DACVVVFSETIELDF---FKDSFVK-DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (542)
Q Consensus 407 ~~RqaCAVESAARhNP--D~eViVLsetl~ld~---fk~pFLk-egYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~ks~y 480 (542)
-+--+.++.|+.++++ ...|+++..+..... +. .+.. .+.+|.++.++...+. ..|.. ...+
T Consensus 12 ~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~-~~~~~~~~~i~~~~i~~~~~~-~~~~~----------~~~~ 79 (248)
T cd04194 12 APYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLK-ELLKKYNSSIEFIKIDNDDFK-FFPAT----------TDHI 79 (248)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHH-HHHHhcCCeEEEEEcCHHHHh-cCCcc----------cccc
Confidence 3345678899999999 677888876533211 11 1222 2446666666644332 22210 0001
Q ss_pred cchhhhhHHHHHHHHhcC----ceEEeCCceEecccchhcc
Q 009132 481 YNTHYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 481 ~~~HlSDlLRl~vLYKYG----GIYLDlDVIvlKPLd~LlN 517 (542)
...-+.|+.+-.-.+ =+|||+|++++++++.|++
T Consensus 80 ---~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~ 117 (248)
T cd04194 80 ---SYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFD 117 (248)
T ss_pred ---cHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhc
Confidence 135567887776666 4799999999999999864
No 11
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=84.67 E-value=2.9 Score=41.74 Aligned_cols=106 Identities=18% Similarity=0.257 Sum_probs=56.7
Q ss_pred eEEEEecCCCCCCcHHHHHHHHHHHHHCC-CCEEEEEeCCCCccc---ccchhhhc-ccceeeecCChhhhhcCCChhhh
Q 009132 394 RVFMVWNSPPWMYSVRHQRGLESVLFHHR-DACVVVFSETIELDF---FKDSFVKD-GFKVAVAMPNLDELLKDTPAHEF 468 (542)
Q Consensus 394 rIFf~WtSg~~~L~~RqaCAVESAARhNP-D~eViVLsetl~ld~---fk~pFLke-gYNV~Vv~pDL~eLfkGTPLe~f 468 (542)
|||.+ .+...+-+-..-++-|+..++. ..+++|+.++..... +. .+... +.++.+..+|....+...|...
T Consensus 2 ni~~~--~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~-~~~~~~~~~i~~i~i~~~~~~~~~~~~~- 77 (248)
T cd06432 2 NIFSV--ASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLP-EMAKEYGFEYELVTYKWPRWLHKQTEKQ- 77 (248)
T ss_pred eEEEE--cCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHH-HHHHHhCCceEEEEecChhhhhcccccc-
Confidence 57776 3333455556788899998864 577777876543211 11 12221 3355555555333333322210
Q ss_pred hhhHHhhhccCCcchhhhhHHHHHH--HHh--c-CceEEeCCceEecccchhcc
Q 009132 469 ASVWFEWRKTKFYNTHYSELVRLAA--LYK--Y-GGIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 469 ~~~W~kw~ks~y~~~HlSDlLRl~v--LYK--Y-GGIYLDlDVIvlKPLd~LlN 517 (542)
. .+.+ +.|+.+ +-. + ==+|||+|++|..+|.+|++
T Consensus 78 -----------~--~~~~-y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~ 117 (248)
T cd06432 78 -----------R--IIWG-YKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMD 117 (248)
T ss_pred -----------h--hHHH-HHHHHHHHhhhhccCEEEEEcCCceecccHHHHHh
Confidence 0 0011 223222 111 1 12799999999999999975
No 12
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=84.64 E-value=0.55 Score=45.62 Aligned_cols=120 Identities=19% Similarity=0.223 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHHCC-CCEEEEEeCCCCcccccchh---hh-cccceeeecCChhhhhcCCChhhhhhhHHhhhccCC
Q 009132 406 YSVRHQRGLESVLFHHR-DACVVVFSETIELDFFKDSF---VK-DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (542)
Q Consensus 406 L~~RqaCAVESAARhNP-D~eViVLsetl~ld~fk~pF---Lk-egYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~ks~y 480 (542)
+-.-...++-|+.++++ ...++|+.+..... ....+ .. .++++.+..++...... -+. ....
T Consensus 12 y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~~----------~~~~- 78 (246)
T cd00505 12 YLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVDILDSVD-SEH----------LKRP- 78 (246)
T ss_pred hhHHHHHHHHHHHHhCCCCeEEEEEEccccHH-HHHHHHHHHhccCceEEEEeccccCcch-hhh----------hcCc-
Confidence 34445788999999988 46677777653321 11111 11 23455555554332211 000 0000
Q ss_pred cchhhhhHHHHHHHHhcCc----eEEeCCceEecccchhccc------ccc-ccCC----------------CCCCcccc
Q 009132 481 YNTHYSELVRLAALYKYGG----IYMDSDIIVLKSLSSLNNS------VGM-EDKF----------------PGSSLNGA 533 (542)
Q Consensus 481 ~~~HlSDlLRl~vLYKYGG----IYLDlDVIvlKPLd~LlNf------vG~-E~s~----------------~~~~LnNA 533 (542)
...+=+.|+.+-.-... +|||+|+++++++++|++. +|+ ++.. ...++|.|
T Consensus 79 --~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsG 156 (246)
T cd00505 79 --IKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSG 156 (246)
T ss_pred --cccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeee
Confidence 01223456655332222 7999999999999999752 222 1110 12478999
Q ss_pred EEEEecC
Q 009132 534 VMAFRKH 540 (542)
Q Consensus 534 VMaFeKg 540 (542)
||.+...
T Consensus 157 Vmlinl~ 163 (246)
T cd00505 157 VFVVNLS 163 (246)
T ss_pred eEEEech
Confidence 9988764
No 13
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=83.36 E-value=0.8 Score=42.51 Aligned_cols=41 Identities=32% Similarity=0.500 Sum_probs=27.4
Q ss_pred eEEeCCceEecccchhcc------ccc-ccc------------------CCCCCCccccEEEEecC
Q 009132 500 IYMDSDIIVLKSLSSLNN------SVG-MED------------------KFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 500 IYLDlDVIvlKPLd~LlN------fvG-~E~------------------s~~~~~LnNAVMaFeKg 540 (542)
+|||+|++++++++.|.+ +++ .+. ......+|.|||.+.+.
T Consensus 103 lyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsGv~l~~~~ 168 (250)
T PF01501_consen 103 LYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSGVMLFNPS 168 (250)
T ss_dssp EEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEEEEEEEHH
T ss_pred EEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCcEEEEeec
Confidence 799999999999999865 122 111 01257899999998754
No 14
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=75.36 E-value=1.9 Score=44.43 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=30.6
Q ss_pred ceEEeCCceEecccchhccc-----cccccCCCCCCccccEEEEecC
Q 009132 499 GIYMDSDIIVLKSLSSLNNS-----VGMEDKFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 499 GIYLDlDVIvlKPLd~LlNf-----vG~E~s~~~~~LnNAVMaFeKg 540 (542)
=+|||+|++|+++++.|... +++... +..+|.|||..+|.
T Consensus 95 vlyLDaD~l~~~~ideLf~~~~~~~~Aap~~--~~~FNSGvmvi~ps 139 (278)
T cd06914 95 IIYFDSDSIIRHPMDELFFLPNYIKFAAPRA--YWKFASHLMVIKPS 139 (278)
T ss_pred EEEecCChhhhcChHHHhcCCcccceeeecC--cceecceeEEEeCC
Confidence 37999999999999999642 233322 34899999999875
No 15
>PLN00176 galactinol synthase
Probab=68.29 E-value=4.2 Score=43.06 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=22.4
Q ss_pred HHHHHHHhc-CceEEeCCceEecccchhcc
Q 009132 489 VRLAALYKY-GGIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 489 LRl~vLYKY-GGIYLDlDVIvlKPLd~LlN 517 (542)
+|+.-|-.| ==+|||+|++|+++++.|.+
T Consensus 105 l~iw~l~~ydkvlyLDaD~lv~~nid~Lf~ 134 (333)
T PLN00176 105 LRIWEFVEYSKMIYLDGDIQVFENIDHLFD 134 (333)
T ss_pred hhhccccccceEEEecCCEEeecChHHHhc
Confidence 444445555 35899999999999999975
No 16
>PLN02718 Probable galacturonosyltransferase
Probab=65.53 E-value=11 Score=43.14 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=59.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHH--CCC-CEEEEEeCCCCcccccchh-h-hcc--cceeeecCChhhhhcCCChhh
Q 009132 395 VFMVWNSPPWMYSVRHQRGLESVLFH--HRD-ACVVVFSETIELDFFKDSF-V-KDG--FKVAVAMPNLDELLKDTPAHE 467 (542)
Q Consensus 395 IFf~WtSg~~~L~~RqaCAVESAARh--NPD-~eViVLsetl~ld~fk~pF-L-keg--YNV~Vv~pDL~eLfkGTPLe~ 467 (542)
++++..++.- + --.-+|-|...+ +|+ ..++|+++........ .+ . ... .+|++..+|- |..-|..
T Consensus 314 ~Hia~~sDNv-l--aasVvInSil~Ns~np~~ivFHVvTD~is~~~mk-~wf~l~~~~~a~I~V~~Idd---f~~lp~~- 385 (603)
T PLN02718 314 YHYVVFSDNV-L--ACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAIS-MWFLLNPPGKATIQILNIDD---MNVLPAD- 385 (603)
T ss_pred eeEEEEcCCc-e--eEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHH-HHHHhCCCCCcEEEEEecch---hcccccc-
Confidence 4555555551 2 234567888887 565 6667777765433222 12 1 122 2566655542 2221110
Q ss_pred hhhhHHhhhccCCcchhhhhHHHHHHHHhcC----ceEEeCCceEecccchhcc
Q 009132 468 FASVWFEWRKTKFYNTHYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 468 f~~~W~kw~ks~y~~~HlSDlLRl~vLYKYG----GIYLDlDVIvlKPLd~LlN 517 (542)
+...-.+.....-......-+.|+.+---+. =||||+|++|..+|..|++
T Consensus 386 ~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 386 YNSLLMKQNSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred chhhhhhccccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhc
Confidence 0000001100010112356788887743333 3799999999999999975
No 17
>PLN02829 Probable galacturonosyltransferase
Probab=65.37 E-value=18 Score=41.74 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHhcCc----eEEeCCceEecccchhcc
Q 009132 483 THYSELVRLAALYKYGG----IYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 483 ~HlSDlLRl~vLYKYGG----IYLDlDVIvlKPLd~LlN 517 (542)
.....+.|+.+=--+.- ||||+|+||.++|.+|++
T Consensus 440 lS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~ 478 (639)
T PLN02829 440 LSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWS 478 (639)
T ss_pred hhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHh
Confidence 34678899987333334 799999999999999975
No 18
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=63.62 E-value=17 Score=38.53 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHCC--CCEEEEEeCCCCcccccchhh--hccc--ceeeecCChhhhhcCCChhhhhhhHHhhhccCCcch
Q 009132 410 HQRGLESVLFHHR--DACVVVFSETIELDFFKDSFV--KDGF--KVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNT 483 (542)
Q Consensus 410 qaCAVESAARhNP--D~eViVLsetl~ld~fk~pFL--kegY--NV~Vv~pDL~eLfkGTPLe~f~~~W~kw~ks~y~~~ 483 (542)
-.-||-|+..||+ ..+++++..+.+.+..+ .+- -+.| .+.+..+|...+-.-.|.. .. | .
T Consensus 17 ~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~-~l~~~~~~f~~~i~~~~id~~~~~~~~~~~---~~---~-------s 82 (325)
T COG1442 17 AGVSIYSLLEHNRKIFYKFHILVDGLNEEDKK-KLNETAEPFKSFIVLEVIDIEPFLDYPPFT---KR---F-------S 82 (325)
T ss_pred HHHHHHHHHHhCccccEEEEEEecCCCHHHHH-HHHHHHHhhccceeeEEEechhhhcccccc---cc---h-------H
Confidence 4578999999999 89999998886643322 111 1233 3445556655443333211 11 1 1
Q ss_pred hhhhHHHHHHHHhcCc----eEEeCCceEecccchhcc
Q 009132 484 HYSELVRLAALYKYGG----IYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 484 HlSDlLRl~vLYKYGG----IYLDlDVIvlKPLd~LlN 517 (542)
.+=+.|+.+==-+.= +|+|+|++|..+|+.++.
T Consensus 83 -~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~ 119 (325)
T COG1442 83 -KMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFF 119 (325)
T ss_pred -HHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHh
Confidence 233455554333344 899999999999999863
No 19
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=51.82 E-value=40 Score=39.12 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=27.4
Q ss_pred hhhhhHHHHHHHHhcC----ceEEeCCceEecccchhcc
Q 009132 483 THYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 483 ~HlSDlLRl~vLYKYG----GIYLDlDVIvlKPLd~LlN 517 (542)
.....+.|+.+---+. =+|||+|+||.++|.+|++
T Consensus 458 lS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~ 496 (657)
T PLN02910 458 LSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWS 496 (657)
T ss_pred hhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHh
Confidence 4468889987743333 4799999999999999975
No 20
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=50.23 E-value=7 Score=41.05 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=21.9
Q ss_pred HHHHHH---HHh-cCceEEeCCceEecccchhcc
Q 009132 488 LVRLAA---LYK-YGGIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 488 lLRl~v---LYK-YGGIYLDlDVIvlKPLd~LlN 517 (542)
+.|+.+ |-. -==+|||+|++|..|+++|++
T Consensus 85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred HHHHHHHHHhhhhceEEEeccceeecCCHHHHHH
Confidence 566654 222 234799999999999999875
No 21
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=42.93 E-value=15 Score=26.58 Aligned_cols=15 Identities=53% Similarity=0.753 Sum_probs=12.0
Q ss_pred ccCCCCccccHHHHH
Q 009132 143 AFGSDDFPVDDEVRR 157 (542)
Q Consensus 143 ~f~sdd~~~d~~~~~ 157 (542)
.|||||+--|++..|
T Consensus 1 LFGSddEeed~ea~r 15 (28)
T PF10587_consen 1 LFGSDDEEEDEEAER 15 (28)
T ss_pred CCCCccccccHHHHH
Confidence 399999988877654
No 22
>PLN02659 Probable galacturonosyltransferase
Probab=41.52 E-value=13 Score=42.04 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=26.8
Q ss_pred hhhhhHHHHHHHHhcC----ceEEeCCceEecccchhcc
Q 009132 483 THYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 483 ~HlSDlLRl~vLYKYG----GIYLDlDVIvlKPLd~LlN 517 (542)
.-+..+.|+.+=--+. =+|||+|+||.++|.+|++
T Consensus 327 lS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~ 365 (534)
T PLN02659 327 NSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWD 365 (534)
T ss_pred eeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHh
Confidence 3467889987733222 3799999999999999975
No 23
>PLN02870 Probable galacturonosyltransferase
Probab=40.57 E-value=14 Score=41.81 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHhcC----ceEEeCCceEecccchhcc
Q 009132 484 HYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 484 HlSDlLRl~vLYKYG----GIYLDlDVIvlKPLd~LlN 517 (542)
-+..+.|+.+=--+. =+|||+|+||.++|.+|++
T Consensus 327 S~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~ 364 (533)
T PLN02870 327 SLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWD 364 (533)
T ss_pred CHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhh
Confidence 367888987743333 3799999999999999975
No 24
>PLN02867 Probable galacturonosyltransferase
Probab=37.84 E-value=16 Score=41.42 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHhcCc----eEEeCCceEecccchhcc
Q 009132 485 YSELVRLAALYKYGG----IYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 485 lSDlLRl~vLYKYGG----IYLDlDVIvlKPLd~LlN 517 (542)
+--+.|+.+=--+.- +|||.|+||.++|.+|++
T Consensus 330 ~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwd 366 (535)
T PLN02867 330 LLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWE 366 (535)
T ss_pred HHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHh
Confidence 567788877665554 799999999999999975
No 25
>PLN02523 galacturonosyltransferase
Probab=35.64 E-value=18 Score=41.10 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHhcC----ceEEeCCceEecccchhcc
Q 009132 484 HYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 484 HlSDlLRl~vLYKYG----GIYLDlDVIvlKPLd~LlN 517 (542)
-...+.|+.+=--+. =+|||+|+||.++|.+|++
T Consensus 361 S~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~ 398 (559)
T PLN02523 361 SMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK 398 (559)
T ss_pred hHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence 357788987644333 3799999999999999975
No 26
>PRK15383 type III secretion system protein; Provisional
Probab=35.35 E-value=1e+02 Score=32.69 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhcCc-------------------eEEeCCceEecccchhccc--ccc--ccCCCCCCccccEEEEecC
Q 009132 486 SELVRLAALYKYGG-------------------IYMDSDIIVLKSLSSLNNS--VGM--EDKFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 486 SDlLRl~vLYKYGG-------------------IYLDlDVIvlKPLd~LlNf--vG~--E~s~~~~~LnNAVMaFeKg 540 (542)
=|+.|=+.|.|-|+ ||||+|+++..-|..+.-. ++. ...+..-.+.|++++..+.
T Consensus 190 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRs 267 (335)
T PRK15383 190 FDFYRNLFLLKGSDAFLEAGKHGCHHLQPGGGCIYLDADMLLTDKLGTLYLPDGIAIHVSRKDNHVSLENGIIAVNRS 267 (335)
T ss_pred hHHHHHHHHHhcccceeeccccCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEecCCceecccceEEEccC
Confidence 58889888887653 8999999999988877432 221 1111234677777776654
No 27
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=33.39 E-value=44 Score=25.33 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhccCCch
Q 009132 13 YGAQVCALIAALLLLLSVSLLHTRLSQPNQ 42 (542)
Q Consensus 13 ~gaq~cav~~a~lll~sv~~l~~rls~~~~ 42 (542)
|||-+++.+|.+.+++++..+|+.++...+
T Consensus 4 ~~a~~~s~~ai~~~l~~~p~i~~~i~~~~~ 33 (53)
T PF01484_consen 4 YGAIVVSTVAILSCLITVPSIYNDIQNFQS 33 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999999887654
No 28
>PLN02769 Probable galacturonosyltransferase
Probab=32.37 E-value=22 Score=40.99 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHhcCc----eEEeCCceEecccchhcc
Q 009132 484 HYSELVRLAALYKYGG----IYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 484 HlSDlLRl~vLYKYGG----IYLDlDVIvlKPLd~LlN 517 (542)
-...++|+.+=--+.- ||||+|+||.++|.+|++
T Consensus 436 S~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 436 SVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred cHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhc
Confidence 3678888877332233 799999999999999975
No 29
>PLN02742 Probable galacturonosyltransferase
Probab=26.68 E-value=33 Score=38.95 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=61.3
Q ss_pred ccccccceEEEEecCCCCCCcHHHHHHHHHHHHHCC--CCEEEEEeCCCCcccccchhhhcccc-e--eeecCChhhh-h
Q 009132 387 RKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHR--DACVVVFSETIELDFFKDSFVKDGFK-V--AVAMPNLDEL-L 460 (542)
Q Consensus 387 ~etsC~~rIFf~WtSg~~~L~~RqaCAVESAARhNP--D~eViVLsetl~ld~fk~pFLkegYN-V--~Vv~pDL~eL-f 460 (542)
.+++|..++.|+=.++..++ -++..|+..|| .++|.|..-. ++. ++...|. | ++...++..| |
T Consensus 249 ~nsk~P~~~VFHiVTD~~n~-----~aM~~WF~~n~~~~a~v~V~n~e-~f~-----wl~~~~~pvl~ql~~~~~~~~yf 317 (534)
T PLN02742 249 SNAKHPDQLVFHLVTDEVNY-----GAMQAWFAMNDFKGVTVEVQKIE-EFS-----WLNASYVPVLKQLQDSDTQSYYF 317 (534)
T ss_pred hhhcCCCcEEEEEeechhhH-----HHHHHHHhhCCCCccEEEEEEec-ccc-----ccccccchHHHHhhhhhhhhhhc
Confidence 45567767777777777554 68899999997 4666665432 111 2222221 0 0000122222 2
Q ss_pred cCCChhhhhhhHHhhhccCCcchhhhhHHHHHHHHhcC----ceEEeCCceEecccchhcc
Q 009132 461 KDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYG----GIYMDSDIIVLKSLSSLNN 517 (542)
Q Consensus 461 kGTPLe~f~~~W~kw~ks~y~~~HlSDlLRl~vLYKYG----GIYLDlDVIvlKPLd~LlN 517 (542)
.+..... ....+.++ ........++|+.+---+. =||||+|+||.++|.+|++
T Consensus 318 ~~~~~~~--~~~~k~r~--p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~ 374 (534)
T PLN02742 318 SGSQDDG--KTEIKFRN--PKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFS 374 (534)
T ss_pred ccccccc--cccccccC--cccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhc
Confidence 2111000 00001111 1223467888987744333 3799999999999999975
No 30
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=25.35 E-value=66 Score=33.94 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhcC-------------------ceEEeCCceEecccchhccc--ccc--ccCCCCCCccccEEEEecC
Q 009132 486 SELVRLAALYKYG-------------------GIYMDSDIIVLKSLSSLNNS--VGM--EDKFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 486 SDlLRl~vLYKYG-------------------GIYLDlDVIvlKPLd~LlNf--vG~--E~s~~~~~LnNAVMaFeKg 540 (542)
=|+.|=+.|.|-| -||||+|+++..-|..+.-. ++. ...+..-.+.|++++..+.
T Consensus 182 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRs 259 (326)
T PRK15382 182 FDFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVLYAPDGIAVHVDCNDDSKSLENGAIVVNRS 259 (326)
T ss_pred hHHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEecCCccccccceEEEccC
Confidence 4777877777754 38999999999988877432 221 1111234677777776654
No 31
>PF15240 Pro-rich: Proline-rich
Probab=24.97 E-value=40 Score=33.48 Aligned_cols=11 Identities=73% Similarity=0.960 Sum_probs=9.6
Q ss_pred HHHHHHHHHHh
Q 009132 24 LLLLLSVSLLH 34 (542)
Q Consensus 24 ~lll~sv~~l~ 34 (542)
||+|||||||-
T Consensus 2 LlVLLSvALLA 12 (179)
T PF15240_consen 2 LLVLLSVALLA 12 (179)
T ss_pred hhHHHHHHHHH
Confidence 78999999984
No 32
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.88 E-value=98 Score=33.39 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=25.8
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHhhhccCCch
Q 009132 6 RARRRPRYGAQVCALIAALLLLLSVSLLHTRLSQPNQ 42 (542)
Q Consensus 6 ~~rrr~~~gaq~cav~~a~lll~sv~~l~~rls~~~~ 42 (542)
+++=+++||-+||.|+-+ |+--||-++..+....
T Consensus 91 p~kLk~G~Ge~vc~VLd~---Lad~AL~~~~F~~~~p 124 (359)
T PF10498_consen 91 PSKLKQGSGEHVCYVLDQ---LADEALKRKNFKWKRP 124 (359)
T ss_pred hHHhhCCCCHHHHHHHHH---HHHHHHHhcCcCccCC
Confidence 355689999999999765 4667777777766665
No 33
>PRK15384 type III secretion system protein; Provisional
Probab=21.82 E-value=82 Score=33.28 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhcCc-------------------eEEeCCceEecccchhccc--ccc--ccCCCCCCccccEEEEecC
Q 009132 486 SELVRLAALYKYGG-------------------IYMDSDIIVLKSLSSLNNS--VGM--EDKFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 486 SDlLRl~vLYKYGG-------------------IYLDlDVIvlKPLd~LlNf--vG~--E~s~~~~~LnNAVMaFeKg 540 (542)
=|+.|=+.|.|-|+ ||||+|+++..-|..+.-. ++. ...+..-.+.|++++..+.
T Consensus 187 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRs 264 (336)
T PRK15384 187 FDFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGIYIPDGIAVHVERIDGRASMENGIIAVDRN 264 (336)
T ss_pred hHHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccEEcCCceEEEEEecCCceecccceEEEccC
Confidence 47888888877553 8999999999988877432 221 1111234677777776654
Done!