Query 009132
Match_columns 542
No_of_seqs 153 out of 680
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 19:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bvl_A Toxin B; glycosyltransf 98.8 5.7E-09 1.9E-13 111.6 8.1 42 391-434 94-135 (543)
2 2vk9_A Alpha-toxin; glycosyltr 98.7 1.4E-08 4.8E-13 108.8 7.3 42 391-434 96-137 (551)
3 4dmv_A Toxin A, TCDA; transfer 98.5 6.8E-08 2.3E-12 103.2 6.1 43 390-434 107-149 (556)
4 3tzt_A Glycosyl transferase fa 94.0 0.098 3.4E-06 50.7 7.1 119 406-539 16-166 (276)
5 3jsz_A LGT1, putative uncharac 89.8 0.33 1.1E-05 51.2 5.4 112 393-510 133-253 (525)
6 1ll2_A Glycogenin-1; protein-s 88.9 0.24 8.1E-06 49.6 3.5 41 500-540 99-142 (333)
7 3u2u_A Glycogenin-1, GN-1, GN1 87.0 0.38 1.3E-05 47.1 3.5 42 499-540 99-143 (263)
8 1g9r_A Glycosyl transferase; a 77.6 1 3.5E-05 43.9 2.4 118 407-539 12-161 (311)
9 1of5_B MTR2, YKL186C, mRNA tra 19.7 14 0.00047 35.4 -1.5 46 175-220 132-178 (184)
10 4gwp_D Mediator of RNA polymer 11.0 40 0.0014 30.4 -0.8 23 157-184 61-83 (121)
No 1
>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A*
Probab=98.81 E-value=5.7e-09 Score=111.65 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=38.2
Q ss_pred ccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCCC
Q 009132 391 CDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE 434 (542)
Q Consensus 391 C~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl~ 434 (542)
-.+.||+||.++. +|..++.||+||.+++|||+|++|.++..
T Consensus 94 IPKiIHyiW~Gg~--~P~~~~~cI~sWkk~~PDYei~lW~D~na 135 (543)
T 2bvl_A 94 VEKNLHFVWIGGQ--INDTAINYINQWKDVNSDYNVNVFYDSNA 135 (543)
T ss_dssp CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTTC
T ss_pred CCCceEEEEeCCC--CCHHHHHHHHHHHHHCcCCEEEEEecchh
Confidence 4689999999998 69999999999999999999999987644
No 2
>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22
Probab=98.71 E-value=1.4e-08 Score=108.79 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=38.2
Q ss_pred ccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCCC
Q 009132 391 CDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE 434 (542)
Q Consensus 391 C~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl~ 434 (542)
-.+.||+||.++. +|..++.||+||.+++||++|.+|.++..
T Consensus 96 IPKiIHyiW~Gg~--~P~~~~~cI~sWkk~~PDYei~lW~D~na 137 (551)
T 2vk9_A 96 ASKNLSFIWIGGP--ISDQSLEYYNMWKMFNKDYNIRLFYDKNS 137 (551)
T ss_dssp CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTTC
T ss_pred CCcceEEEEcCCC--CCHHHHHHHHHHHHHCcCCEEEEEeccch
Confidence 4589999999998 69999999999999999999999987644
No 3
>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A
Probab=98.52 E-value=6.8e-08 Score=103.23 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=38.6
Q ss_pred cccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCCC
Q 009132 390 KCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE 434 (542)
Q Consensus 390 sC~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl~ 434 (542)
.-.+.||+||.++. +|..+..||+||.+++|||+|.+|.+...
T Consensus 107 ~IPKiIHy~W~Gg~--~P~~~~kcI~sWkk~~PDYeI~lW~DsnA 149 (556)
T 4dmv_A 107 PVEKNLHFVWIGGE--VSDIALEYIKQWADINAEYNIKLWYDSEA 149 (556)
T ss_dssp ECCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTTC
T ss_pred ccCCceEEEecCCC--CCHHHHHHHHHHHHHCCCCeEEEEeCchh
Confidence 35689999999986 79999999999999999999999987643
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=94.02 E-value=0.098 Score=50.69 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHHHHCCC--CEEEEEeCCCCccccc--chhhh-cccceeeecCChhhhhcCCChhhhhhhHHhhhccCC
Q 009132 406 YSVRHQRGLESVLFHHRD--ACVVVFSETIELDFFK--DSFVK-DGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (542)
Q Consensus 406 L~~RqaCAVESAARhNPD--~eViVLsetl~ld~fk--~pFLk-egYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~ks~y 480 (542)
+-.-...+|-|+.+++++ ..|+|+.++...+... ..+.. .+..|.++.++- +.+++.|.. ..+
T Consensus 16 Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~~~~~~-----------~~~ 83 (276)
T 3tzt_A 16 YIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFSFAKVT-----------DRY 83 (276)
T ss_dssp GHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHhcCccc-----------ccc
Confidence 445567889999999994 5666676654322111 01221 233455555553 234433321 011
Q ss_pred cchhhhhHHHHHHHHhcC-----ceEEeCCceEecccchhcc------cccc-ccCCC---------------CCCcccc
Q 009132 481 YNTHYSELVRLAALYKYG-----GIYMDSDIIVLKSLSSLNN------SVGM-EDKFP---------------GSSLNGA 533 (542)
Q Consensus 481 ~~~HlSDlLRl~vLYKYG-----GIYLDlDVIvlKPLd~LlN------fvG~-E~s~~---------------~~~LnNA 533 (542)
...-+.|+.+=.-.. =+|||+|++|++++++|++ .+|+ ++... ..++|.|
T Consensus 84 ---s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsG 160 (276)
T 3tzt_A 84 ---PKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSG 160 (276)
T ss_dssp ---CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEE
T ss_pred ---CHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEee
Confidence 134567776655444 3899999999999999864 2332 22110 1578889
Q ss_pred EEEEec
Q 009132 534 VMAFRK 539 (542)
Q Consensus 534 VMaFeK 539 (542)
||.++.
T Consensus 161 V~linl 166 (276)
T 3tzt_A 161 LLLINL 166 (276)
T ss_dssp EEEEEH
T ss_pred EEEEEH
Confidence 988764
No 5
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=89.83 E-value=0.33 Score=51.24 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=71.7
Q ss_pred ceEEEEecCCCC--CCcHHHHHHHHHHHHHCCCCEEEEEeCCCCccc-----ccchhhhcccceeeecCChhhhhcCCCh
Q 009132 393 MRVFMVWNSPPW--MYSVRHQRGLESVLFHHRDACVVVFSETIELDF-----FKDSFVKDGFKVAVAMPNLDELLKDTPA 465 (542)
Q Consensus 393 ~rIFf~WtSg~~--~L~~RqaCAVESAARhNPD~eViVLsetl~ld~-----fk~pFLkegYNV~Vv~pDL~eLfkGTPL 465 (542)
...+-+|.|... .++..++..++-++..+|+.++++...+.-++. +. +|.++ -+| ..+|.+.+-.+.+|
T Consensus 133 n~~~~IWFSn~P~~fMp~e~q~~Lle~re~nPG~~i~LVYsStlLn~~a~~ql~-~fake-n~I--sllDids~k~e~~L 208 (525)
T 3jsz_A 133 NVQTSIWFSIKPELFMPSKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQMK-AFAKK-QNI--SLIDIDSVKTDSPL 208 (525)
T ss_dssp SEEEEECCCSSTTCSSCHHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHH-HHHHH-TTE--EEEEGGGCCCCCTH
T ss_pred CceEEEEEeCChhHhccHHHHHHHHHHHhhCCCCeEEEEeehhhcCHHHHHHHH-HHHHh-cCc--eEeehhhhcchHHH
Confidence 345556776553 589999999999999999999988766544431 22 23322 133 34555555577777
Q ss_pred hhhhhhH-HhhhccCCcchhhhhHHHHH-HHHhcCceEEeCCceEec
Q 009132 466 HEFASVW-FEWRKTKFYNTHYSELVRLA-ALYKYGGIYMDSDIIVLK 510 (542)
Q Consensus 466 e~f~~~W-~kw~ks~y~~~HlSDlLRl~-vLYKYGGIYLDlDVIvlK 510 (542)
-.++..= ....+|. .++-.||++|.. -+|.+ |.|.|.|+-+-.
T Consensus 209 ynl~k~EL~nLg~GG-NpAaASDivRWlspv~~~-gtYtDfD~PvDt 253 (525)
T 3jsz_A 209 YPLIKAELANLGMGG-NPAAASDLCRWIPELFNE-GFYVDIDLPVDS 253 (525)
T ss_dssp HHHHHHHHHTTTTTC-CHHHHHHHHTTCTTTCSS-EEEECTTCCBCG
T ss_pred HHHHHHHHHhccCCC-CHHHHHHHHHhhHHhccc-Cceeeeeccccc
Confidence 5554331 1122233 346689999975 57777 999999985543
No 6
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=88.93 E-value=0.24 Score=49.61 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=30.9
Q ss_pred eEEeCCceEecccchhcc--ccc-cccCCCCCCccccEEEEecC
Q 009132 500 IYMDSDIIVLKSLSSLNN--SVG-MEDKFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 500 IYLDlDVIvlKPLd~LlN--fvG-~E~s~~~~~LnNAVMaFeKg 540 (542)
+|||+|++|+++++.|++ .++ ..+...+..+|.|||.+.+.
T Consensus 99 lYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~ 142 (333)
T 1ll2_A 99 VFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPS 142 (333)
T ss_dssp EEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCC
T ss_pred EEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCC
Confidence 899999999999999976 233 22222235899999999763
No 7
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=86.97 E-value=0.38 Score=47.07 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=31.4
Q ss_pred ceEEeCCceEecccchhcc---ccccccCCCCCCccccEEEEecC
Q 009132 499 GIYMDSDIIVLKSLSSLNN---SVGMEDKFPGSSLNGAVMAFRKH 540 (542)
Q Consensus 499 GIYLDlDVIvlKPLd~LlN---fvG~E~s~~~~~LnNAVMaFeKg 540 (542)
=+|||+|++|+++++.|.. +.+..+......+|.|||.+++.
T Consensus 99 vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~ 143 (263)
T 3u2u_A 99 CVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPS 143 (263)
T ss_dssp EEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCC
T ss_pred EEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEccc
Confidence 3899999999999999965 23333322246899999998874
No 8
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=77.65 E-value=1 Score=43.89 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=63.2
Q ss_pred cHHHHHHHHHH-HHHC-CCCEEEEEeCCCCccc---ccchhhhc-ccceeeecCChhhhhcCCChhhhhhhHHhhhccCC
Q 009132 407 SVRHQRGLESV-LFHH-RDACVVVFSETIELDF---FKDSFVKD-GFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKF 480 (542)
Q Consensus 407 ~~RqaCAVESA-ARhN-PD~eViVLsetl~ld~---fk~pFLke-gYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~ks~y 480 (542)
-.--..++.|+ .+++ .+.+++|+.++..... +. .+... +..|.++.++... +.+.|.. . ..+
T Consensus 12 ~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~-~~~~~~~~~i~~~~~~~~~-~~~~~~~------~----~~~ 79 (311)
T 1g9r_A 12 AAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVA-ANLRGGGGNIRFIDVNPED-FAGFPLN------I----RHI 79 (311)
T ss_dssp HHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHH-HHSGGGTTTEEEEECCGGG-GTTSCCC------C----TTC
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHH-HHHHHcCCEEEEEEcCHHH-HhcCccc------c----ccC
Confidence 33446788899 4444 3467777776543211 11 12211 3456666665432 3333320 0 000
Q ss_pred cchhhhhHHHHHHHHhcCc----eEEeCCceEecccchhccc------ccc-ccC---------------CCCCCccccE
Q 009132 481 YNTHYSELVRLAALYKYGG----IYMDSDIIVLKSLSSLNNS------VGM-EDK---------------FPGSSLNGAV 534 (542)
Q Consensus 481 ~~~HlSDlLRl~vLYKYGG----IYLDlDVIvlKPLd~LlNf------vG~-E~s---------------~~~~~LnNAV 534 (542)
..+-+.|+.+-.-++. ||||+|++|++++++|++. +|+ ++. ....++|.||
T Consensus 80 ---s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv 156 (311)
T 1g9r_A 80 ---SITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGV 156 (311)
T ss_dssp ---CGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEE
T ss_pred ---CHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeee
Confidence 0223445544333344 8999999999999999752 332 110 0124889999
Q ss_pred EEEec
Q 009132 535 MAFRK 539 (542)
Q Consensus 535 MaFeK 539 (542)
|.++.
T Consensus 157 ~linl 161 (311)
T 1g9r_A 157 LLINL 161 (311)
T ss_dssp EEECH
T ss_pred eeeeH
Confidence 98865
No 9
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=19.66 E-value=14 Score=35.40 Aligned_cols=46 Identities=20% Similarity=0.529 Sum_probs=29.4
Q ss_pred CCCCcccchhhhhhccchhhhhccccccccc-cccCCCCCCCCCCCC
Q 009132 175 KGKSPLREKWGEWFDKKGEFLRRDKMFKSHL-EVLNPMNNPLLQDPD 220 (542)
Q Consensus 175 ~~~~p~~~~w~~w~~~~~~~l~~~~m~~~~~-~~~np~nnp~lqdpd 220 (542)
++..+-|.-||.||----.-.--+|.++..+ |+++++|=-|.--|+
T Consensus 132 ~~~~~~Rp~wg~~fGvsl~lv~de~i~~~d~~~~Iss~ny~~~y~P~ 178 (184)
T 1of5_B 132 NDMNKPRPLWGPYFGISLQLIIDDRIFRNDFNGVISGFNYNMVYKPE 178 (184)
T ss_dssp ---------CCCCEEEEEEEEEEGGGGGTCCTTCEEEEEEEEEECCC
T ss_pred ccCCCCCcccccccceEEEEEEechhhcCchhhhhhccceEEEEccc
Confidence 4456778889999977766677788888888 999988866655554
No 10
>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D
Probab=11.04 E-value=40 Score=30.39 Aligned_cols=23 Identities=39% Similarity=0.931 Sum_probs=19.6
Q ss_pred HhhcccchhhhhhhhccCCCCCcccchh
Q 009132 157 RKMTLVKDIEDALLLKTGKGKSPLREKW 184 (542)
Q Consensus 157 ~~~~~v~~iedalll~~~~~~~p~~~~w 184 (542)
+-+..|+||.|-|.|- -.+||||
T Consensus 61 qTmQLIKgvQDLLvlT-----RsIREKW 83 (121)
T 4gwp_D 61 QTMQLIKNVQDLLILT-----RSIKEKW 83 (121)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 4567899999999998 7889997
Done!