Query 009134
Match_columns 542
No_of_seqs 473 out of 2611
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 20:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 3.9E-39 8.5E-44 337.7 24.5 212 299-534 65-296 (365)
2 KOG0697 Protein phosphatase 1B 100.0 7E-40 1.5E-44 318.2 16.0 219 299-535 22-258 (379)
3 PF00481 PP2C: Protein phospha 100.0 7.9E-40 1.7E-44 328.4 14.2 215 312-541 7-238 (254)
4 KOG0698 Serine/threonine prote 100.0 8.3E-38 1.8E-42 325.2 20.3 208 312-533 47-269 (330)
5 PTZ00224 protein phosphatase 2 100.0 3.2E-36 7E-41 316.9 22.0 207 297-533 20-236 (381)
6 KOG0700 Protein phosphatase 2C 100.0 8.7E-34 1.9E-38 291.0 17.1 209 318-535 84-358 (390)
7 COG0631 PTC1 Serine/threonine 100.0 9.7E-34 2.1E-38 285.7 17.1 207 299-532 8-220 (262)
8 KOG0699 Serine/threonine prote 100.0 1.8E-33 3.9E-38 281.6 14.4 128 401-537 331-466 (542)
9 cd00143 PP2Cc Serine/threonine 100.0 3.5E-29 7.6E-34 248.2 22.3 205 312-534 8-222 (254)
10 smart00332 PP2Cc Serine/threon 100.0 1.4E-28 2.9E-33 244.9 22.8 204 312-534 13-225 (255)
11 PRK14559 putative protein seri 100.0 2.5E-27 5.4E-32 262.7 20.4 197 298-523 374-591 (645)
12 KOG1323 Serine/threonine phosp 99.9 2.9E-26 6.3E-31 228.1 18.5 250 273-534 50-435 (493)
13 KOG1379 Serine/threonine prote 99.8 1.4E-17 3E-22 166.8 17.0 180 317-535 89-274 (330)
14 PF13672 PP2C_2: Protein phosp 99.7 2.1E-16 4.5E-21 153.8 13.1 180 313-534 6-195 (212)
15 PF00498 FHA: FHA domain; Int 99.7 1.6E-16 3.4E-21 127.3 7.4 68 204-280 1-68 (68)
16 smart00331 PP2C_SIG Sigma fact 99.5 2.1E-13 4.6E-18 130.7 17.3 157 318-534 16-176 (193)
17 cd00060 FHA Forkhead associate 99.5 3E-13 6.4E-18 115.7 11.1 90 177-281 1-93 (102)
18 KOG0618 Serine/threonine phosp 99.5 2.6E-13 5.7E-18 151.6 11.8 214 298-533 521-741 (1081)
19 TIGR03354 VI_FHA type VI secre 99.4 4E-13 8.7E-18 142.9 11.2 94 179-288 2-103 (396)
20 PLN02927 antheraxanthin epoxid 99.4 1.1E-12 2.4E-17 147.3 10.7 98 176-283 532-638 (668)
21 COG1716 FOG: FHA domain [Signa 99.3 4E-12 8.7E-17 121.9 9.4 70 203-284 90-159 (191)
22 KOG1881 Anion exchanger adapto 99.2 2.9E-11 6.2E-16 132.0 10.2 111 172-294 151-270 (793)
23 smart00240 FHA Forkhead associ 99.2 1.8E-11 3.8E-16 92.4 4.8 51 204-255 1-52 (52)
24 KOG1882 Transcriptional regula 99.1 9.8E-11 2.1E-15 112.9 5.0 128 148-287 139-283 (293)
25 COG3456 Predicted component of 99.1 2.4E-10 5.3E-15 118.9 7.5 95 178-288 3-104 (430)
26 TIGR02865 spore_II_E stage II 98.9 2.6E-08 5.7E-13 114.7 17.2 159 313-532 561-727 (764)
27 PF07228 SpoIIE: Stage II spor 98.6 2.4E-06 5.3E-11 81.5 16.0 138 333-524 2-141 (193)
28 KOG1880 Nuclear inhibitor of p 98.5 8E-08 1.7E-12 95.9 3.4 111 165-288 4-117 (337)
29 TIGR02500 type_III_yscD type I 98.2 5.3E-06 1.1E-10 89.4 9.0 94 178-288 1-95 (410)
30 KOG0615 Serine/threonine prote 97.4 0.00021 4.5E-09 75.2 5.9 79 203-290 65-156 (475)
31 KOG0245 Kinesin-like protein [ 96.3 0.0075 1.6E-07 69.6 7.1 78 191-284 471-551 (1221)
32 KOG1892 Actin filament-binding 96.0 0.031 6.7E-07 64.0 9.8 96 177-289 356-456 (1629)
33 KOG2293 Daxx-interacting prote 94.8 0.06 1.3E-06 58.4 6.6 92 179-287 432-530 (547)
34 COG2208 RsbU Serine phosphatas 94.4 1.2 2.6E-05 47.3 15.4 32 501-532 290-328 (367)
35 TIGR01663 PNK-3'Pase polynucle 94.0 0.1 2.3E-06 58.0 6.6 79 190-284 25-103 (526)
36 KOG0241 Kinesin-like protein [ 87.7 1 2.3E-05 52.2 6.2 75 203-289 468-542 (1714)
37 PRK15367 type III secretion sy 82.9 3.6 7.8E-05 44.0 7.2 89 176-286 3-91 (395)
38 PF15102 TMEM154: TMEM154 prot 82.6 1.3 2.8E-05 40.8 3.3 27 13-39 68-94 (146)
39 PF12273 RCR: Chitin synthesis 63.5 3.4 7.3E-05 37.3 1.0 18 10-27 4-21 (130)
40 PF15176 LRR19-TM: Leucine-ric 62.2 5.1 0.00011 34.5 1.8 31 9-39 22-52 (102)
41 KOG1094 Discoidin domain recep 59.7 20 0.00044 40.4 6.3 24 12-35 397-420 (807)
42 cd01324 cbb3_Oxidase_CcoQ Cyto 50.9 21 0.00046 26.6 3.3 23 9-31 13-35 (48)
43 PF06679 DUF1180: Protein of u 50.8 15 0.00033 34.6 3.1 27 8-34 95-121 (163)
44 PF12273 RCR: Chitin synthesis 48.6 16 0.00035 32.9 2.9 31 6-36 3-33 (130)
45 PF11027 DUF2615: Protein of u 47.2 18 0.0004 31.5 2.8 26 8-33 53-78 (103)
46 PF13275 S4_2: S4 domain; PDB: 44.9 11 0.00023 30.1 1.0 32 246-286 33-64 (65)
47 PF07423 DUF1510: Protein of u 43.8 21 0.00046 35.3 3.1 20 9-28 17-36 (217)
48 PF08114 PMP1_2: ATPase proteo 41.4 13 0.00028 26.8 0.8 25 7-31 10-34 (43)
49 PF01479 S4: S4 domain; Inter 38.8 17 0.00036 26.4 1.2 23 246-277 26-48 (48)
50 COG5025 Transcription factor o 38.2 37 0.0008 38.7 4.2 71 217-293 123-193 (610)
51 TIGR02988 YaaA_near_RecF S4 do 38.1 24 0.00053 27.0 2.1 25 246-279 34-58 (59)
52 PF13253 DUF4044: Protein of u 37.8 44 0.00095 23.4 3.0 22 4-25 9-30 (35)
53 PF02439 Adeno_E3_CR2: Adenovi 36.8 46 0.00099 23.7 3.0 26 6-31 7-32 (38)
54 COG4736 CcoQ Cbb3-type cytochr 36.5 47 0.001 26.1 3.3 27 7-33 10-36 (60)
55 PRK11507 ribosome-associated p 35.4 33 0.00071 27.8 2.4 32 246-286 37-68 (70)
56 PF12911 OppC_N: N-terminal TM 34.7 41 0.00089 25.2 2.8 22 5-26 14-35 (56)
57 PRK06531 yajC preprotein trans 34.3 32 0.00068 30.6 2.3 18 14-31 7-24 (113)
58 PF05545 FixQ: Cbb3-type cytoc 33.1 56 0.0012 24.2 3.2 23 9-31 12-34 (49)
59 PF14575 EphA2_TM: Ephrin type 29.2 62 0.0013 26.4 3.1 18 11-28 7-24 (75)
60 TIGR00847 ccoS cytochrome oxid 28.5 64 0.0014 24.5 2.8 9 44-52 30-38 (51)
61 PHA00007 E cell lysis protein 27.1 79 0.0017 26.1 3.3 22 5-26 7-28 (91)
62 PF09436 DUF2016: Domain of un 26.9 35 0.00077 27.8 1.3 20 505-524 25-44 (72)
63 COG2501 S4-like RNA binding pr 26.8 60 0.0013 26.5 2.6 33 246-287 37-69 (73)
64 PF05393 Hum_adeno_E3A: Human 26.3 95 0.0021 26.3 3.7 28 9-36 37-64 (94)
65 PF07172 GRP: Glycine rich pro 24.4 71 0.0015 27.4 2.8 11 12-22 8-18 (95)
66 PF14316 DUF4381: Domain of un 23.3 52 0.0011 30.2 1.9 23 10-32 25-47 (146)
67 smart00363 S4 S4 RNA-binding d 23.3 72 0.0016 23.0 2.4 28 245-281 25-52 (60)
68 PF15102 TMEM154: TMEM154 prot 22.2 59 0.0013 30.1 1.9 27 10-36 62-88 (146)
69 PRK14748 kdpF potassium-transp 20.8 1.5E+02 0.0033 19.7 3.0 19 6-24 5-23 (29)
70 PF01102 Glycophorin_A: Glycop 20.5 76 0.0017 28.5 2.3 17 17-33 78-94 (122)
71 KOG1110 Putative steroid membr 20.2 1.3E+02 0.0028 29.0 3.8 41 10-50 9-49 (183)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=3.9e-39 Score=337.73 Aligned_cols=212 Identities=31% Similarity=0.456 Sum_probs=173.9
Q ss_pred cceeeccchhhHhcCCccCCCccccccccCCC--------CCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhH
Q 009134 299 FGVGVASDPMALRRGAKKLPMEDVCYYHWPLP--------GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLK 370 (542)
Q Consensus 299 ~~vg~~sd~~~~~~~G~R~~nED~~~v~~~~~--------~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~ 370 (542)
+.+|..++ .|.|+.|||++++...+. +.....||||||||||+.+|++|++.+++.+.+...
T Consensus 65 ~~~~~~s~------~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~---- 134 (365)
T PLN03145 65 VRSGAWAD------IGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED---- 134 (365)
T ss_pred eEEEEEcc------ccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc----
Confidence 46778887 578999999988754331 123468999999999999999999999998864211
Q ss_pred HhhhcccccHHHHHHHHHHHHHHHhhhc-------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCC
Q 009134 371 RERLLSQCDASDVLRDAFFQTEASMNHH-------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSED 443 (542)
Q Consensus 371 ~e~~~~~~~~~~~L~~af~~~d~~i~~~-------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~D 443 (542)
....+.++|.+||.+++..+.+. .+|||++++++..+. +|||||||||||++++|++++||+|
T Consensus 135 -----~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~-----l~vaNvGDSRayl~r~g~~~~LT~D 204 (365)
T PLN03145 135 -----FPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRS-----LVVANAGDCRAVLCRRGKAIEMSRD 204 (365)
T ss_pred -----cchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCe-----EEEEecCCceEEEEcCCeEEEecCC
Confidence 12346788999999999988653 479999999996544 7899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcCCCcccCcccccC-cccccccCcccccccC----CCcCccceeeeeEeeecCCCcEEEEEcCCCC
Q 009134 444 HRIASYSERLRIQETGEPLKDGETRLCG-LNLARMLGDKFLKQQD----ARFSAEPYISPVVHIDQASKAFALLASDGFW 518 (542)
Q Consensus 444 H~~~~~~E~~RI~~~Gg~i~~~~~Rv~G-l~lSRalGD~~~k~~~----~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLw 518 (542)
|++.++.|++||++.||.+..+ +++| +++||||||+.+|..+ ..++++|+|.. +.+. ..++||||||||||
T Consensus 205 H~~~~~~E~~RI~~~Gg~v~~g--~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~-~~l~-~~D~fLILaSDGLw 280 (365)
T PLN03145 205 HKPMCSKERKRIEASGGYVYDG--YLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMT-TQLT-EEDEFLIIGCDGIW 280 (365)
T ss_pred CCCCCHHHHHHHHHcCCceecc--eECCccccccccccccccccccccCCCcceEEEEEE-EECC-CCCEEEEEeCCccc
Confidence 9999999999999999999876 8889 9999999999887542 34789999983 3343 24568899999999
Q ss_pred CCCCHHHHHHHHHhhh
Q 009134 519 DVISVKKAIQLVVQLA 534 (542)
Q Consensus 519 D~ls~~ei~~iv~~~~ 534 (542)
|+|+++++++++++.+
T Consensus 281 dvls~ee~v~~i~~~l 296 (365)
T PLN03145 281 DVFRSQNAVDFARRRL 296 (365)
T ss_pred cCcCHHHHHHHHHHHH
Confidence 9999999999887654
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=7e-40 Score=318.21 Aligned_cols=219 Identities=27% Similarity=0.368 Sum_probs=182.6
Q ss_pred cceeeccchhhHhcCCccCCCccccccccCCC-CCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHh--hhc
Q 009134 299 FGVGVASDPMALRRGAKKLPMEDVCYYHWPLP-GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRE--RLL 375 (542)
Q Consensus 299 ~~vg~~sd~~~~~~~G~R~~nED~~~v~~~~~-~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e--~~~ 375 (542)
+.+|++|. +|||..|||++.....++ +-++|++|||||||.|+..|+++++.+.+.+.. +..++. +..
T Consensus 22 lryg~SSM------QGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~s---se~F~~~~k~g 92 (379)
T KOG0697|consen 22 LRYGVSSM------QGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIIS---SEEFRGMTKNG 92 (379)
T ss_pred eeeeeccc------cchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhh---hHHHhhhccCC
Confidence 44566665 699999999998765443 356899999999999999999999999877743 222211 112
Q ss_pred ccccHHHHHHHHHHHHHHHhhhc--------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCC
Q 009134 376 SQCDASDVLRDAFFQTEASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIA 447 (542)
Q Consensus 376 ~~~~~~~~L~~af~~~d~~i~~~--------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~ 447 (542)
+.++.+.-|+..|.++|+.+... .+||||+.+++...+ +|++||||||++++|+|+++.-|.||+|.
T Consensus 93 sv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h-----~y~~NcGDSRavl~rng~~~f~TqDHKP~ 167 (379)
T KOG0697|consen 93 SVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTH-----IYIINCGDSRAVLCRNGEVVFSTQDHKPY 167 (379)
T ss_pred cHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCce-----EEEEecCcchhheecCCceEEeccCCCCC
Confidence 34568889999999999877653 589999999997665 78999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCcccCcccccC-cccccccCcccccccC------CCcCccceeeeeEeeecCCCcEEEEEcCCCCCC
Q 009134 448 SYSERLRIQETGEPLKDGETRLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWDV 520 (542)
Q Consensus 448 ~~~E~~RI~~~Gg~i~~~~~Rv~G-l~lSRalGD~~~k~~~------~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ 520 (542)
++.|++||+.+||.+.-. |++| |++||||||++||..+ ..|+++|+|.. ......++||||||||+||+
T Consensus 168 ~p~EkeRIqnAGGSVMIq--RvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~--~~R~eedeFivlACDGIwDV 243 (379)
T KOG0697|consen 168 LPKEKERIQNAGGSVMIQ--RVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYI--IERSEEDEFIVLACDGIWDV 243 (379)
T ss_pred ChHHHHHHhcCCCeEEEE--EecceeeeehhccCcccccCCCCCchhcccCCCCceEE--eeccccCcEEEEEccchhhh
Confidence 999999999999999854 9999 9999999999999763 57999999973 33345678999999999999
Q ss_pred CCHHHHHHHHHhhhh
Q 009134 521 ISVKKAIQLVVQLAD 535 (542)
Q Consensus 521 ls~~ei~~iv~~~~~ 535 (542)
|+++|++++|+..+.
T Consensus 244 Mtneelcefv~sRl~ 258 (379)
T KOG0697|consen 244 MTNEELCEFVKSRLE 258 (379)
T ss_pred cccHHHHHHHHhhhe
Confidence 999999999997653
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=7.9e-40 Score=328.38 Aligned_cols=215 Identities=36% Similarity=0.509 Sum_probs=171.1
Q ss_pred cCCccCCCccccccccCCC---CCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHH
Q 009134 312 RGAKKLPMEDVCYYHWPLP---GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAF 388 (542)
Q Consensus 312 ~~G~R~~nED~~~v~~~~~---~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af 388 (542)
.+|+|.+|||.+++..++. +..+..+|||||||||+.+++++++.++..+.+.+..... ..+.++|..+|
T Consensus 7 ~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~-------~~~~~al~~a~ 79 (254)
T PF00481_consen 7 MQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDG-------NDIEEALRQAF 79 (254)
T ss_dssp EECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHH
T ss_pred CCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccc-------cchhhccccee
Confidence 3799999999999976553 4567899999999999999999999999887765554321 15789999999
Q ss_pred HH-HHHHhhh-------ccCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEE-EcCCCCCCCCHHHHHHHHHcC
Q 009134 389 FQ-TEASMNH-------HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQI-KMSEDHRIASYSERLRIQETG 459 (542)
Q Consensus 389 ~~-~d~~i~~-------~~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~-qLT~DH~~~~~~E~~RI~~~G 459 (542)
.+ ++..+.. ..+||||+++++..+. +|+|||||||||+++++... +||+||+|.++.|+.||++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~-----l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~g 154 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNK-----LYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAG 154 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTE-----EEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT
T ss_pred eecccccccccccccccccccccccccccccce-----eEEEeeeeeeeeeeeccccccccccccccchhhccceeeccc
Confidence 99 8877754 3889999999997655 88999999999999999988 999999999999999999999
Q ss_pred CCcccCcccccC-cccccccCccccccc-CCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHhhhhh-
Q 009134 460 EPLKDGETRLCG-LNLARMLGDKFLKQQ-DARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQLADE- 536 (542)
Q Consensus 460 g~i~~~~~Rv~G-l~lSRalGD~~~k~~-~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~~~- 536 (542)
|.+.. .+|+.| |++||+|||..+|.. +++|+++|+|. .+.+... ++|||||||||||+|+++|+++++++...+
T Consensus 155 g~v~~-~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~-~~~l~~~-d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~ 231 (254)
T PF00481_consen 155 GRVSE-NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDIS-EVDLTPD-DEFLVLASDGLWDVLSNEEIVDIVRESLNSG 231 (254)
T ss_dssp -GEEE-TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEE-EEEEBTT-EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHH
T ss_pred ccccc-chhhhhccccccccccccccccccceeeeecccc-ccccccc-ceEEEEEcccccccCCHHHHHHHHHHHHhcC
Confidence 99985 469999 899999999999972 23599999998 3455543 569999999999999999999999988654
Q ss_pred --hhhhh
Q 009134 537 --REILC 541 (542)
Q Consensus 537 --~~~~c 541 (542)
++.+|
T Consensus 232 ~~~~~~a 238 (254)
T PF00481_consen 232 RSPQEAA 238 (254)
T ss_dssp SHHHHHH
T ss_pred CcHHHHH
Confidence 55555
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-38 Score=325.21 Aligned_cols=208 Identities=35% Similarity=0.465 Sum_probs=174.0
Q ss_pred cCCccCCCccccccccCCC----CCC-CceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHH
Q 009134 312 RGAKKLPMEDVCYYHWPLP----GVD-KFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRD 386 (542)
Q Consensus 312 ~~G~R~~nED~~~v~~~~~----~~~-~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~ 386 (542)
.+|+|..|||++.....+. +.. ..++|||||||||+.+|+|+.+.++..+.+.+...... ..+++++++
T Consensus 47 ~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~------~~~~~a~~~ 120 (330)
T KOG0698|consen 47 IRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDR------QDVKDALRR 120 (330)
T ss_pred cCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccch------HHHHHHHHH
Confidence 3799999999998865432 233 68999999999999999999999999887755542211 347899999
Q ss_pred HHH-HHHHHhhh-----ccCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCC-eEEEcCCCCCCCCHHHHHHHHHcC
Q 009134 387 AFF-QTEASMNH-----HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDG-KQIKMSEDHRIASYSERLRIQETG 459 (542)
Q Consensus 387 af~-~~d~~i~~-----~~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G-~~~qLT~DH~~~~~~E~~RI~~~G 459 (542)
+|. +++..+.+ ...|+||+++++.... . |||||+|||||||++.| ++++||.||+|..+.|+.||+++|
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~-~---l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~G 196 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKGR-K---LYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAG 196 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecCC-E---EEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcC
Confidence 999 69999986 3667777777775442 1 78999999999999866 799999999999999999999999
Q ss_pred CCcccC--cccccC-cccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHhh
Q 009134 460 EPLKDG--ETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQL 533 (542)
Q Consensus 460 g~i~~~--~~Rv~G-l~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~ 533 (542)
|.+... .+|++| |++||+|||+.+|.. .|+++|+|.. ......++|||||||||||+|+++|++++|+..
T Consensus 197 G~v~~~~~~~Rv~G~LavsRa~GD~~~k~~--~v~a~Pei~~--~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~ 269 (330)
T KOG0698|consen 197 GRVSNWGGVWRVNGVLAVSRAFGDVELKSQ--GVIAEPEIQQ--VKINSDDEFLILASDGIWDVVSNQEAVDLVRDE 269 (330)
T ss_pred CEEEEcCCcceEeceEEEeeecCCHHhcCC--cEecCCceEE--EEcCCCCcEEEEeCCchhcccChHHHHHHHHHH
Confidence 999744 479999 999999999999963 4999999983 333345789999999999999999999999985
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3.2e-36 Score=316.86 Aligned_cols=207 Identities=25% Similarity=0.396 Sum_probs=170.1
Q ss_pred cccceeeccchhhHhcCCccCCCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcc
Q 009134 297 IPFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLS 376 (542)
Q Consensus 297 ~~~~vg~~sd~~~~~~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~ 376 (542)
..+.+|.+++ .|+|++|||++++.. .++..+|||||||||..+|+++++.+++.+.+...
T Consensus 20 ~~~~~g~~s~------~G~R~~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~---------- 79 (381)
T PTZ00224 20 SIFRCASACV------NGYRESMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE---------- 79 (381)
T ss_pred ccEEEEEEeC------CCCCCCCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc----------
Confidence 3566788887 688999999987642 23567999999999999999999988876643110
Q ss_pred cccHHHHHHHHHHHHHHHhhhc--cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHH
Q 009134 377 QCDASDVLRDAFFQTEASMNHH--YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLR 454 (542)
Q Consensus 377 ~~~~~~~L~~af~~~d~~i~~~--~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~~~~E~~R 454 (542)
....+.|+++|..+|..+.+. .+|||++++++..+. . +|||||||||+|++++|++++||+||++.++.|+.|
T Consensus 80 -~~~~~~l~~a~~~~d~~i~~~~~~~GsTatv~lI~~~~-~---l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~R 154 (381)
T PTZ00224 80 -PMTDERMEELCLEIDEEWMDSGREGGSTGTFCVIMKDV-H---LQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQR 154 (381)
T ss_pred -cccHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEECC-E---EEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhH
Confidence 112355888999999888655 569999998886432 1 789999999999999999999999999999999999
Q ss_pred HHHcCCCcccCcccccC-cccccccCcccccccC------CCcCccceeeeeEeeecCCCcEEEEEcCCCCC-CCCHHHH
Q 009134 455 IQETGEPLKDGETRLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWD-VISVKKA 526 (542)
Q Consensus 455 I~~~Gg~i~~~~~Rv~G-l~lSRalGD~~~k~~~------~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD-~ls~~ei 526 (542)
|.+.|+.+..+ |++| +++||+|||..+|..+ +.|+++|+|. .+....+|||||||||||| +++++|+
T Consensus 155 I~~~gg~v~~~--Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~---~~~l~~~D~llLaSDGL~d~~ls~eEi 229 (381)
T PTZ00224 155 IEACGGRVVSN--RVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVT---HLTCQSNDFIILACDGVFEGNFSNEEV 229 (381)
T ss_pred HHHccCEeccc--cccCceeeecccCCcccccccccccccCcceeeeEEE---EEECCCCCEEEEECCCcCcCccCHHHH
Confidence 99999998765 9999 9999999998887553 2467899998 3455578999999999999 8999999
Q ss_pred HHHHHhh
Q 009134 527 IQLVVQL 533 (542)
Q Consensus 527 ~~iv~~~ 533 (542)
++++.+.
T Consensus 230 ~~iv~~~ 236 (381)
T PTZ00224 230 VAFVKEQ 236 (381)
T ss_pred HHHHHHH
Confidence 9999854
No 6
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-34 Score=291.05 Aligned_cols=209 Identities=30% Similarity=0.420 Sum_probs=167.4
Q ss_pred CCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhh-----------------------
Q 009134 318 PMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERL----------------------- 374 (542)
Q Consensus 318 ~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~----------------------- 374 (542)
.-||...+... ...++.|+||||||||..+++++++.+..++...+.......+.
T Consensus 84 ~~edrv~~~~s--~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVS--EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeee--ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 45777665432 35678889999999999999999999999998666553221110
Q ss_pred --cccccHHHHHHHHHHHHHHHhhhc------------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEe---CC--
Q 009134 375 --LSQCDASDVLRDAFFQTEASMNHH------------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV---DG-- 435 (542)
Q Consensus 375 --~~~~~~~~~L~~af~~~d~~i~~~------------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r---~G-- 435 (542)
.....+.++|.+||.++++.+... .+|+||+|+++.... |||||+|||||+|.+ +|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~-----LyVaN~GDSRAVLG~~~~~~~~ 236 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGD-----LYVANVGDSRAVLGVVENNGSW 236 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCe-----EEEEecCcchhhhceecCCCCe
Confidence 003568899999999999988543 679999999886555 889999999999964 33
Q ss_pred -eEEEcCCCCCCCCHHHHHHHHHcCC----CcccCcccccC-cccccccCccccccc------------------CCCcC
Q 009134 436 -KQIKMSEDHRIASYSERLRIQETGE----PLKDGETRLCG-LNLARMLGDKFLKQQ------------------DARFS 491 (542)
Q Consensus 436 -~~~qLT~DH~~~~~~E~~RI~~~Gg----~i~~~~~Rv~G-l~lSRalGD~~~k~~------------------~~~v~ 491 (542)
.++|||.||+..+++|++||+..+- .+....||+.| |.+||||||.++|.. +|+++
T Consensus 237 ~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~Pylt 316 (390)
T KOG0700|consen 237 LVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLT 316 (390)
T ss_pred EEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCcee
Confidence 4789999999999999999988763 23344489999 999999999999964 47899
Q ss_pred ccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHhhhh
Q 009134 492 AEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQLAD 535 (542)
Q Consensus 492 ~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~~ 535 (542)
++|+|. ..++.. +|.|+|||||||||+||++|++++|.+++.
T Consensus 317 aeP~i~-~HrL~p-~DkFLIlASDGLwE~lsNeeaV~lV~~~i~ 358 (390)
T KOG0700|consen 317 AEPSIT-HHKLTP-NDKFLILASDGLWEYLSNEEAVSLVHEFIS 358 (390)
T ss_pred ccceEE-EEEcCC-CCeEEEEeccchhhhcChHHHHHHHHHhhc
Confidence 999998 224443 578999999999999999999999999654
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-34 Score=285.75 Aligned_cols=207 Identities=29% Similarity=0.407 Sum_probs=160.3
Q ss_pred cceeeccchhhHhcCCccCCCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccc
Q 009134 299 FGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQC 378 (542)
Q Consensus 299 ~~vg~~sd~~~~~~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~ 378 (542)
+.++..++ .++.|.+|||++++.....+.. ..||+||||||||.+|++||+.+++.|.+.+......... .
T Consensus 8 ~~~~~~s~-----~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~---~ 78 (262)
T COG0631 8 LKVAGLSD-----VGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN---E 78 (262)
T ss_pred eeeeeecc-----CCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc---h
Confidence 34445555 4788889999999865332333 6799999999999999999999999999887764432211 1
Q ss_pred cHHHHHHHHHHHHHHHhhhc------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHH
Q 009134 379 DASDVLRDAFFQTEASMNHH------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSER 452 (542)
Q Consensus 379 ~~~~~L~~af~~~d~~i~~~------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~~~~E~ 452 (542)
.+.++|.+++..++..+... ..||++|++++...+++ +|||||||||+|++++|+.+|||.||++.+..++
T Consensus 79 ~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~---l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~ 155 (262)
T COG0631 79 SLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNK---LYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQ 155 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCe---EEEEEccCCeEEEEcCCceEEeccCCcHHHHHHH
Confidence 16899999999999888764 34566666555555544 7899999999999999999999999999999999
Q ss_pred HHHHHcCCCcccCcccccCcccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHh
Q 009134 453 LRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQ 532 (542)
Q Consensus 453 ~RI~~~Gg~i~~~~~Rv~Gl~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~ 532 (542)
.++...++..... |.+ ++|||||+... .+|++. ......+||+|||||||||.++++++++++++
T Consensus 156 ~~~~~~~~~~~~~--~~~--~ltralG~~~~--------~~p~~~---~~~~~~~d~llL~SDGl~d~v~~~~i~~il~~ 220 (262)
T COG0631 156 RGIITPEEARSHP--RRN--ALTRALGDFDL--------LEPDIT---ELELEPGDFLLLCSDGLWDVVSDDEIVDILKN 220 (262)
T ss_pred hcCCCHHHHHhCc--cch--hhhhhcCCCcc--------cceeEE---EEEcCCCCEEEEECCCCccCcCHHHHHHHHhc
Confidence 8865544433332 222 79999998765 468887 45555679999999999999999999999995
No 8
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-33 Score=281.65 Aligned_cols=128 Identities=37% Similarity=0.608 Sum_probs=114.0
Q ss_pred CCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcc-cCcccccC-ccccccc
Q 009134 401 GCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLK-DGETRLCG-LNLARML 478 (542)
Q Consensus 401 GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~-~~~~Rv~G-l~lSRal 478 (542)
||||+|||+..++ |||||.||||||++|+|+++-|+.||+|..+.|..||.++||.+. .+ ||+| |++||||
T Consensus 331 GtTAvVcLv~g~~-----liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDG--RVNGGLNLSRA~ 403 (542)
T KOG0699|consen 331 GTTAVVCLVGGDK-----LIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDG--RVNGGLNLSRAF 403 (542)
T ss_pred CceEEEEEecCce-----EEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecc--eecCccchhhhh
Confidence 8999999997655 889999999999999999999999999999999999999999997 66 9999 9999999
Q ss_pred CcccccccC------CCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHhhhhhh
Q 009134 479 GDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQLADER 537 (542)
Q Consensus 479 GD~~~k~~~------~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~~~~ 537 (542)
||..||... .-|++-|+|. ...++ ..++|+||||||||++|+.+|++++|+..+.++
T Consensus 404 GDHaYK~N~~Lp~eEQMIsALPDiK-~l~lT-pedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n 466 (542)
T KOG0699|consen 404 GDHAYKKNQELPLEEQMISALPDIK-ILALT-PEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKN 466 (542)
T ss_pred hhhhhhcccCCChHHHHhhhcccce-eEeec-CcccEEEEEccchhhhccHHHHHHHHHHHHhcC
Confidence 999999652 3588999997 33344 467899999999999999999999999877654
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=3.5e-29 Score=248.23 Aligned_cols=205 Identities=36% Similarity=0.571 Sum_probs=164.9
Q ss_pred cCCccCCCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHHHHH
Q 009134 312 RGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT 391 (542)
Q Consensus 312 ~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~ 391 (542)
.+|.|..|||++++...... .+..+|+|||||||+..+++|++.+.+.+.+.+..... .....+...|+++|..+
T Consensus 8 ~~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~~~ 82 (254)
T cd00143 8 KGGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT----LSEEDIEEALRKAFLRA 82 (254)
T ss_pred CCCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHH
Confidence 37889999999998532111 26789999999999999999999999999887664321 11345778899999999
Q ss_pred HHHhhhc--------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcc
Q 009134 392 EASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLK 463 (542)
Q Consensus 392 d~~i~~~--------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~ 463 (542)
+..+... ..|||++++++..+. ++++|+||||+|++++++++++|.||++.++.+..|+...++.+.
T Consensus 83 ~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~-----l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 157 (254)
T cd00143 83 DEEILEEAQDEPDDARSGTTAVVALIRGNK-----LYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS 157 (254)
T ss_pred HHHHHHhhhhccCCCCCCCcEEEEEEECCE-----EEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE
Confidence 9888643 557777777765332 789999999999999999999999999999999999999988754
Q ss_pred cCcccccC-cccccccCcccccccCCCcCccceeeeeEeeec-CCCcEEEEEcCCCCCCCCHHHHHHHHHhhh
Q 009134 464 DGETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQ-ASKAFALLASDGFWDVISVKKAIQLVVQLA 534 (542)
Q Consensus 464 ~~~~Rv~G-l~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~-~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~ 534 (542)
.. +..+ ..+||+||+..+|.. +..+|++. .... ..+++||||||||||+++++++.+++....
T Consensus 158 ~~--~~~~~~~~t~~lG~~~~~~~---~~~~~~~~---~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~ 222 (254)
T cd00143 158 NG--RVPGVLAVTRALGDFDLKPG---VSAEPDVT---VVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSEL 222 (254)
T ss_pred eC--EEcCceeeccccCCccccCC---EEcCCeEE---EEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHh
Confidence 21 3444 789999999888733 67889887 3344 678999999999999999999999998763
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.96 E-value=1.4e-28 Score=244.94 Aligned_cols=204 Identities=38% Similarity=0.575 Sum_probs=166.3
Q ss_pred cCCccCCCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHHHHH
Q 009134 312 RGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT 391 (542)
Q Consensus 312 ~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~ 391 (542)
.+|.|..|||++++...+ ..+..+|+|||||||+.+|+++++.+.+.+......... ....+.+.|++++..+
T Consensus 13 ~~~~r~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 85 (255)
T smart00332 13 MQGVRKPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKD-----ELEDVEEALRKAFLKT 85 (255)
T ss_pred CCCCCCCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhccc-----chhHHHHHHHHHHHHH
Confidence 489999999999886432 256789999999999999999999998887654332211 0134788899999999
Q ss_pred HHHhhhc--------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcc
Q 009134 392 EASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLK 463 (542)
Q Consensus 392 d~~i~~~--------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~ 463 (542)
+..+... ..|||++++++..+. +|++|+||||+|++++++..+||.||++.++.|..||...++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-----l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 86 DEEILEELESLEEDAGSGSTAVVALISGNK-----LYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHhhhhccCCCCCCccEEEEEEECCE-----EEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9988654 347777777775433 789999999999999999999999999999999999999998876
Q ss_pred cCcccccC-cccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHhhh
Q 009134 464 DGETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQLA 534 (542)
Q Consensus 464 ~~~~Rv~G-l~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~ 534 (542)
.+ +..+ ..+||++|+..+|.. ++.+|++.. ..+ ...+|+||||||||||+++++++.+++.+..
T Consensus 161 ~~--~~~~~~~lt~~~g~~~~~~~---i~~~p~~~~-~~~-~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~ 225 (255)
T smart00332 161 NG--RVNGVLALSRAIGDFFLKPY---VSAEPDVTV-VEL-TEKDDFLILASDGLWDVLSNQEVVDIVRKHL 225 (255)
T ss_pred CC--eECCeEecccccCCHhhcCC---eEeeeEEEE-EEe-cCCCcEEEEECCccccCCCHHHHHHHHHHHh
Confidence 54 6666 899999999888743 788999973 232 3578999999999999999999999998764
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.95 E-value=2.5e-27 Score=262.74 Aligned_cols=197 Identities=21% Similarity=0.290 Sum_probs=139.4
Q ss_pred ccceeeccchhhHhcCCccCCCccccccccCCC-----CC---CCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhh
Q 009134 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLP-----GV---DKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSL 369 (542)
Q Consensus 298 ~~~vg~~sd~~~~~~~G~R~~nED~~~v~~~~~-----~~---~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~ 369 (542)
.+.++.+++ .|++|+.|||++.+...+. .. ....+|+|||||||+.+|++||+.+.+.|.+.+....
T Consensus 374 ~l~~a~~Td-----~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~ 448 (645)
T PRK14559 374 SLEDAGRTD-----VGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW 448 (645)
T ss_pred eEEEEEECC-----CCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh
Confidence 466777777 3557999999987653211 11 2357999999999999999999999999887766432
Q ss_pred HHhhhcccccHHHHHHHHHHHHHHHhhhc----------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEE-eCCeEE
Q 009134 370 KRERLLSQCDASDVLRDAFFQTEASMNHH----------YEGCTATVLLVWADGNANIFAQCANVGDSACVMN-VDGKQI 438 (542)
Q Consensus 370 ~~e~~~~~~~~~~~L~~af~~~d~~i~~~----------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~-r~G~~~ 438 (542)
..+ ...++.|+++|..+|..+.+. .+|||++++++..+. +|++||||||+|++ ++|+++
T Consensus 449 ~~~-----~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~-----l~ianVGDSRaYli~r~g~l~ 518 (645)
T PRK14559 449 QDE-----LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQ-----VAVAHVGDSRLYRVTRKGGLE 518 (645)
T ss_pred ccc-----ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCE-----EEEEEecCceEEEEecCCeEE
Confidence 111 124577888998888888542 357777777775433 78999999999987 578999
Q ss_pred EcCCCCCCCCHHHHHHHHHcCCCcccCcccccCcccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCC
Q 009134 439 KMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFW 518 (542)
Q Consensus 439 qLT~DH~~~~~~E~~RI~~~Gg~i~~~~~Rv~Gl~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLw 518 (542)
|||+||++.+.+.+..+.. .....|..+..+|||||+...+. .+|++. .+....+|+|||||||||
T Consensus 519 QLT~DHs~~~~lv~~Gi~~-----~~a~~~p~~~~LTrALG~~~~~~------l~Pdi~---~~~L~~gD~lLLCSDGL~ 584 (645)
T PRK14559 519 QLTVDHEVGQREIQRGVEP-----QIAYARPDAYQLTQALGPRDNSA------IQPDIQ---FLEIEEDTLLLLCSDGLS 584 (645)
T ss_pred EeCCCCCHHHHHHHhCCCH-----HHHhcCcccceeeeccCCCCCCc------ccceEE---EEEcCCCCEEEEECCCCC
Confidence 9999999875433322110 01111334478999999865542 368886 445557899999999999
Q ss_pred CC--CCH
Q 009134 519 DV--ISV 523 (542)
Q Consensus 519 D~--ls~ 523 (542)
|+ +..
T Consensus 585 D~~~ve~ 591 (645)
T PRK14559 585 DNDLLET 591 (645)
T ss_pred CCcccch
Confidence 94 554
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-26 Score=228.06 Aligned_cols=250 Identities=28% Similarity=0.404 Sum_probs=182.2
Q ss_pred CCCEEEeccccceeeeeccccccccccceeeccchhhHhcCCccCCCccccccccC-----------------------C
Q 009134 273 SGDIITLGTTSSIHVQITSETVSQIPFGVGVASDPMALRRGAKKLPMEDVCYYHWP-----------------------L 329 (542)
Q Consensus 273 ~GD~I~lG~~~~~~~~~s~q~~~~~~~~vg~~sd~~~~~~~G~R~~nED~~~v~~~-----------------------~ 329 (542)
..|+|.+......--.+.+..-+.+|+.+||++..++ |+-..|||-..+..- +
T Consensus 50 s~~ei~~ssdh~~rpvl~~r~~~rmp~~~gyae~ina----gkt~~nedqas~~~l~~~~~~gs~t~~~n~n~~~~~~~l 125 (493)
T KOG1323|consen 50 SEEEIALSSDHSVRPVLCPRFPHRMPLYVGYAEAINA----GKTVQNEDQASAKMLVLTQHQGSETRKRNSNENDDDPML 125 (493)
T ss_pred cHHHhhhccCccccceeccCccccCchhhhHHHHhhc----CccccccccccceEEEEecccCccccCCCCCccccCcCC
Confidence 3445555444333333344444578999999987655 888899998766310 0
Q ss_pred C-------------CCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHH-------------------------
Q 009134 330 P-------------GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKR------------------------- 371 (542)
Q Consensus 330 ~-------------~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~------------------------- 371 (542)
+ ...++.+|.+||||.|..+|-.|++.+.+++...+.+....
T Consensus 126 ~~g~~~~~k~~~~a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~ 205 (493)
T KOG1323|consen 126 TPGGDDTVKSSMFAPRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSE 205 (493)
T ss_pred CCCCCcchhhcccCCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCccccc
Confidence 0 01146799999999999999999999999998877643221
Q ss_pred -----hh-hcccccHHHHHHHHHHHHHHHhhhc------cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEE
Q 009134 372 -----ER-LLSQCDASDVLRDAFFQTEASMNHH------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIK 439 (542)
Q Consensus 372 -----e~-~~~~~~~~~~L~~af~~~d~~i~~~------~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~q 439 (542)
|+ .-.+.-+.-+|+.||+.+|+.|... ..||||.++++...+ +|+||.|||||++.|++++++
T Consensus 206 ~~~~~ek~Ir~E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGK-----lYvaNAGDsRAIlVrndeirp 280 (493)
T KOG1323|consen 206 MSREDEKRIRHEHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGK-----LYVANAGDSRAILVRNDEIRP 280 (493)
T ss_pred ccchhhccCchHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccc-----eEEccCCCceEEEEecCCeee
Confidence 00 0011226678999999999998765 568998888887655 889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHcCC--------Cc------------------------------------------ccC---c
Q 009134 440 MSEDHRIASYSERLRIQETGE--------PL------------------------------------------KDG---E 466 (542)
Q Consensus 440 LT~DH~~~~~~E~~RI~~~Gg--------~i------------------------------------------~~~---~ 466 (542)
|+.+.+|. .||+|++..+- .. -.+ .
T Consensus 281 lS~efTPe--tERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrk 358 (493)
T KOG1323|consen 281 LSKEFTPE--TERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRK 358 (493)
T ss_pred cccccCcH--HHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchh
Confidence 99999774 68888875541 00 001 1
Q ss_pred ccccC-cccccccCcccccccC------CCcCccceeeeeEee---ecCCCcEEEEEcCCCCCCCCHHHHHHHHHhhh
Q 009134 467 TRLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHI---DQASKAFALLASDGFWDVISVKKAIQLVVQLA 534 (542)
Q Consensus 467 ~Rv~G-l~lSRalGD~~~k~~~------~~v~~~P~I~~~~~~---~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~ 534 (542)
.|+.+ +.+||.|||..+|-.+ +.+++.|+|+ ++.+ +...||.+|||||||||++|++|+..+|++++
T Consensus 359 aRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~-V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L 435 (493)
T KOG1323|consen 359 ARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVR-VYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFL 435 (493)
T ss_pred hhhhhhheeccccCcceeeeecCCcccchhhhcCCeeE-EEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhc
Confidence 25677 8999999999998654 5567777776 2232 23457899999999999999999999999876
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-17 Score=166.76 Aligned_cols=180 Identities=21% Similarity=0.250 Sum_probs=126.8
Q ss_pred CCCccccccccCCCCCCCceEEEEecCCCcchh-----hhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHHHHH
Q 009134 317 LPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAA-----AKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT 391 (542)
Q Consensus 317 ~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~-----a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~ 391 (542)
+.-||++|+.. .....+.|||||+|||.- +.| |+.|+....+..++.. ....++..+|.+||.++
T Consensus 89 ~~GEDa~Fvss----~~~~~v~GVADGVGGWa~~GiDpg~f-S~eLM~~ce~~v~~~~-----~~~~~P~~lL~~ay~~l 158 (330)
T KOG1379|consen 89 KGGEDAWFVSS----NPHAIVMGVADGVGGWAEYGIDPGAF-SRELMSNCERLVQNSD-----FNPSDPVNLLEKAYAEL 158 (330)
T ss_pred CCCCcceeecc----CcccceEEEccccchHhhcCcCHHHH-HHHHHHHHHHHhcccc-----cCCCChHHHHHHHHHHH
Confidence 45699999963 357789999999998754 444 4444444444444433 23457999999999888
Q ss_pred HHHhhhccCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcccCcccccC
Q 009134 392 EASMNHHYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCG 471 (542)
Q Consensus 392 d~~i~~~~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~~~~~Rv~G 471 (542)
.++-.-...+|||+++++.....+ ||+||+|||...++|+|++++-|..+... .|-
T Consensus 159 ~~~~~~~vGSSTAcI~~l~~~~~~---Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~---------------------FN~ 214 (330)
T KOG1379|consen 159 KSQKVPIVGSSTACILALDRENGK---LHTANLGDSGFLVVREGKVVFRSPEQQHY---------------------FNT 214 (330)
T ss_pred hhcCCCCCCcceeeeeeeecCCCe---EEEeeccCcceEEEECCEEEEcCchheec---------------------cCC
Confidence 765443346677777777643433 78999999999999999999888754211 000
Q ss_pred -cccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHhhhh
Q 009134 472 -LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQLAD 535 (542)
Q Consensus 472 -l~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~~ 535 (542)
++++ ++-..+ ..++...|+..++..++.+.+|.||||||||||+|.+++|++++.....
T Consensus 215 PyQLs--~~p~~~---~~~~~d~p~~ad~~~~~v~~GDvIilATDGlfDNl~e~~Il~il~~~~~ 274 (330)
T KOG1379|consen 215 PYQLS--SPPEGY---SSYISDVPDSADVTSFDVQKGDVIILATDGLFDNLPEKEILSILKGLDA 274 (330)
T ss_pred ceeec--cCCccc---cccccCCccccceEEEeccCCCEEEEecccccccccHHHHHHHHHHhhc
Confidence 1122 111111 1235567888888889999999999999999999999999999987643
No 14
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.69 E-value=2.1e-16 Score=153.83 Aligned_cols=180 Identities=22% Similarity=0.263 Sum_probs=96.0
Q ss_pred CCccCCCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHHHHH-
Q 009134 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT- 391 (542)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~- 391 (542)
.|++..|||++.+.. .++..+++||||+||...++.+|..+++.+.+.+......+.....+.+.+.+.+.+...
T Consensus 6 ~~~~~~nqD~~~~~~----~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T PF13672_consen 6 RGRGAPNQDAFGIRT----DDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIV 81 (212)
T ss_dssp -TTSSS--EEEEEE-----TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCEEeee----CCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 578899999998642 355677799999999999999999999999887776543322110111222222222211
Q ss_pred ----HH---HhhhccCCCceEEEEEEecCCCcEEEEEEEeccceEE-EEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcc
Q 009134 392 ----EA---SMNHHYEGCTATVLLVWADGNANIFAQCANVGDSACV-MNVDGKQIKMSEDHRIASYSERLRIQETGEPLK 463 (542)
Q Consensus 392 ----d~---~i~~~~~GsTatv~li~~~~~~~l~l~vANvGDSRa~-l~r~G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~ 463 (542)
.. .......+||++++++.. +. ++++|+||||+| +.++|++..++.+|+. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~tTl~~~v~~~--~~---~~~~~iGD~~i~~~~~~g~~~~l~~~~~~----~~~~--------- 143 (212)
T PF13672_consen 82 RAFQSAKQADLELRDYGTTLLALVIDP--DK---VYIFNIGDSRIYVIRRNGEIQQLTDDHSG----EYPN--------- 143 (212)
T ss_dssp ----HHHHHSGGGTT-EE-EEEEEEET--TE---EEEEEESS-EEEEEEETTEEEE-S---BH----HHHH---------
T ss_pred hhhhhhhhccccccccCceEEEEEEEC--CE---EEEEEECCCeEEEEECCCEEEEcCCCccc----hhhh---------
Confidence 01 111114456665555532 32 789999999996 5689999999999951 1111
Q ss_pred cCcccccCcccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHH-HHHHHHhhh
Q 009134 464 DGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKK-AIQLVVQLA 534 (542)
Q Consensus 464 ~~~~Rv~Gl~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~e-i~~iv~~~~ 534 (542)
.++.+.... +.+.+. ...+....++.|+|||||||+.+.+.+ +..++.+.+
T Consensus 144 ----------~~~~~~~~~---------~~~~~~-~~~~~~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 144 ----------QTRSLTGDD---------PEPDVQ-YGSIPLEEGDVILLCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp ----------CTTSCCHHC---------CCTETE-EEEEE--TT-EEEEE-HHHHTTS-HHHHHHHH-----
T ss_pred ----------hhhccCccc---------cccCCe-EEEEEcCCCCEEEEECcCccccCCCHHHHHHHhhhcc
Confidence 111222110 111111 123445578999999999999998665 667776654
No 15
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.66 E-value=1.6e-16 Score=127.26 Aligned_cols=68 Identities=38% Similarity=0.728 Sum_probs=62.1
Q ss_pred EEEcCCCCCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCccccCCCCCCCCCCCceecCCCCEEEec
Q 009134 204 LTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLG 280 (542)
Q Consensus 204 ~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG 280 (542)
++|||++.|||+++++.|||+||.|.++.+ +.|+|+|++|+|||||||+++.. +.+++|.+||+|+||
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~--------~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGP--------GEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESS--------TSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCC--------CCEEECCCCCEEEcC
Confidence 589999999999999999999999999887 68999999999999999999994 678999999999998
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.54 E-value=2.1e-13 Score=130.68 Aligned_cols=157 Identities=19% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHHHHHHHHhhh
Q 009134 318 PMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNH 397 (542)
Q Consensus 318 ~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d~~i~~ 397 (542)
..-|.+.+... .++..+++|+||||+...|.+++..+...+.+.+... ..+.+ .+..++..+..
T Consensus 16 ~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~---------~~~~~----~l~~~n~~l~~ 79 (193)
T smart00331 16 VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG---------ISLSQ----ILERLNRAIYE 79 (193)
T ss_pred cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC---------CCHHH----HHHHHHHHHHh
Confidence 45677766432 3457889999999998888898988888887654431 12333 34444555443
Q ss_pred c---cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEe-CCeEEEcCCCCCCCCHHHHHHHHHcCCCcccCcccccCcc
Q 009134 398 H---YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV-DGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLN 473 (542)
Q Consensus 398 ~---~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r-~G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~~~~~Rv~Gl~ 473 (542)
. ..|+|++++.+....++ ++++|+||+|+|+++ ++..++++.+.
T Consensus 80 ~~~~~~~~T~~~~~id~~~~~---l~~~~~Gd~~~~~~~~~~~~~~~~~~~----------------------------- 127 (193)
T smart00331 80 NGEDGMFATLFLALYDFAGGT---LSYANAGHSPPYLLRADGGLVEDLDDL----------------------------- 127 (193)
T ss_pred cCCCCcEEEEEEEEEECCCCE---EEEEeCCCCceEEEECCCCeEEEcCCC-----------------------------
Confidence 3 35666666666333333 679999999999998 66666666542
Q ss_pred cccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHHHhhh
Q 009134 474 LARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQLA 534 (542)
Q Consensus 474 lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv~~~~ 534 (542)
++.+|... ..++++. .+....+|.|+|+||||||.++.+++.+++.+..
T Consensus 128 -~~~lG~~~--------~~~~~~~---~~~l~~gd~l~l~TDGl~e~~~~~~l~~~l~~~~ 176 (193)
T smart00331 128 -GAPLGLEP--------DVEVDVR---ELTLEPGDLLLLYTDGLTEARNPERLEELLEELL 176 (193)
T ss_pred -CceeeeCC--------CCcceeE---EEeeCCCCEEEEECCCccccCChHHHHHHHHHhc
Confidence 23344111 0122332 4566689999999999999999999999999875
No 17
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.48 E-value=3e-13 Score=115.73 Aligned_cols=90 Identities=39% Similarity=0.665 Sum_probs=81.3
Q ss_pred eEEEEEEeCCCCCeEEEecc-CCCCCccEEEcCCCCC-ceEeCCccccccccEEEEeC-CcceEEEEeCCCCCccccCCc
Q 009134 177 CLSLEVVSGPSRGIRCSVQS-ANASRLPLTLGRVSPS-DVLLKDSEVSGKHALINWNP-NKLKWELVDMGSLNGTLLNSQ 253 (542)
Q Consensus 177 ~~~L~v~~G~~~g~~~~l~~-~~~~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~-~~~~~~l~DlgS~NGT~vNg~ 253 (542)
++.|.+..++..+..+.|.. . .++|||.+.| ++.+++..|||.||+|.++. + .|++.|+.|+|||+||++
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~-----~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~~vn~~ 73 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGG-----TYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGTFVNGQ 73 (102)
T ss_pred CeEEEEecCCCceeEEEECCCC-----eEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCeEECCE
Confidence 35688888887888999988 5 7999999999 99999999999999999998 5 899999999999999999
Q ss_pred cccCCCCCCCCCCCceecCCCCEEEecc
Q 009134 254 PINHPDSGSRHWGKPMELTSGDIITLGT 281 (542)
Q Consensus 254 ~v~~p~~~~~~~~~~~~L~~GD~I~lG~ 281 (542)
++.. +.+..|.+||.|.+|.
T Consensus 74 ~~~~--------~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 74 RVSP--------GEPVRLRDGDVIRLGN 93 (102)
T ss_pred ECCC--------CCcEECCCCCEEEECC
Confidence 9984 4569999999999995
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=2.6e-13 Score=151.62 Aligned_cols=214 Identities=17% Similarity=0.257 Sum_probs=161.1
Q ss_pred ccceeeccchhhHhcCCccCCCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhccc
Q 009134 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQ 377 (542)
Q Consensus 298 ~~~vg~~sd~~~~~~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~ 377 (542)
-+.+|++.. .|.|..+==+.....+|.+ ...+.||.+||-+-.....+....+..++.+.++....
T Consensus 521 ~~t~Gv~~~------~gqrnk~c~~~~~v~nf~~-~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~------- 586 (1081)
T KOG0618|consen 521 LWTYGVAGV------SGQRNKVCSRAVWVENFFL-NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGN------- 586 (1081)
T ss_pred heeeccchh------cccccchhhhhhhhhhccc-CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccC-------
Confidence 344566554 3555544433333333322 34578999999999988888888888888776665432
Q ss_pred ccHHHHHHHHHHHHHHHhhhc--cCCCceEEEEEEecCC---CcEEEEEEEeccceEEEEeCCeEEEcCCCC-CCCCHHH
Q 009134 378 CDASDVLRDAFFQTEASMNHH--YEGCTATVLLVWADGN---ANIFAQCANVGDSACVMNVDGKQIKMSEDH-RIASYSE 451 (542)
Q Consensus 378 ~~~~~~L~~af~~~d~~i~~~--~~GsTatv~li~~~~~---~~l~l~vANvGDSRa~l~r~G~~~qLT~DH-~~~~~~E 451 (542)
-.+-|..+|...+.++... ..|..++.+.+..+.- ...++.+||+|+|.++++++|+..++|+-. -..+++|
T Consensus 587 --et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE 664 (1081)
T KOG0618|consen 587 --ETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREE 664 (1081)
T ss_pred --hHHHHHHHHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHH
Confidence 2344899999999998665 5577777777765431 122366999999999999999999988765 4448999
Q ss_pred HHHHHHcCCCcccCcccccC-cccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHHHHHHH
Q 009134 452 RLRIQETGEPLKDGETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLV 530 (542)
Q Consensus 452 ~~RI~~~Gg~i~~~~~Rv~G-l~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ei~~iv 530 (542)
.+||...+|++..+ .+++| ...||++|-+.+.+. |.+.|+|.. +.+. ..++|+|+|+-+||++||.+++++.+
T Consensus 665 ~~RI~~~~g~i~ed-~k~ngvt~~tR~iG~~~l~P~---v~p~Phv~~-~~Lt-~qdE~LIvgn~~lW~~Lsid~a~~~v 738 (1081)
T KOG0618|consen 665 YKRIVDSKGFITED-NKLNGVTSSTRAIGPFSLFPH---VLPDPHVSV-VILT-EQDEFLIVGNKQLWSVLSIDTAVDAV 738 (1081)
T ss_pred HHHHHHhcCeecCC-Ceeeceeeeeeeccccccccc---ccCCCceee-Eecc-cCceEEEEcchHHhhhccHHHHHHHH
Confidence 99999999999853 48999 899999997777654 899999983 3444 46899999999999999999999999
Q ss_pred Hhh
Q 009134 531 VQL 533 (542)
Q Consensus 531 ~~~ 533 (542)
++.
T Consensus 739 Rn~ 741 (1081)
T KOG0618|consen 739 RNV 741 (1081)
T ss_pred hcC
Confidence 954
No 19
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.44 E-value=4e-13 Score=142.94 Aligned_cols=94 Identities=32% Similarity=0.496 Sum_probs=81.9
Q ss_pred EEEEEeCC----CCCeEEEeccCCCCCccEEEcCCCCCceEeCCcc--ccccccEEEEeCCcceEEEEeCCCCCccccC-
Q 009134 179 SLEVVSGP----SRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSE--VSGKHALINWNPNKLKWELVDMGSLNGTLLN- 251 (542)
Q Consensus 179 ~L~v~~G~----~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~--VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vN- 251 (542)
+|.|++.. ..+..+.+... ..+|||++.||++|+|+. ||++||+|.++++ .|+|+|+ |+||||||
T Consensus 2 ~L~v~n~~~l~~g~~~~~~f~~~-----~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~g--~~~l~Dl-StNGT~VN~ 73 (396)
T TIGR03354 2 VLTVLNAHQLTPGIAAQKTFGTN-----GGTIGRSEDCDWVLPDPERHVSGRHARIRYRDG--AYLLTDL-STNGVFLNG 73 (396)
T ss_pred EEEEeccccCCCCcceEEEECCC-----CEEEecCCCCCEEeCCCCCCcchhhcEEEEECC--EEEEEEC-CCCCeEECC
Confidence 56666443 24568888887 789999999999999988 9999999999988 9999999 99999999
Q ss_pred -CccccCCCCCCCCCCCceecCCCCEEEeccccceeee
Q 009134 252 -SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (542)
Q Consensus 252 -g~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~~ 288 (542)
|.++.. +.++.|++||+|+||.+.+.+..
T Consensus 74 sg~~l~~--------~~~~~L~~GD~I~iG~~~lrv~~ 103 (396)
T TIGR03354 74 SGSPLGR--------GNPVRLEQGDRLRLGDYEIRVSL 103 (396)
T ss_pred CCCCCCC--------CCceEcCCCCEEEECCEEEEEEe
Confidence 888884 56799999999999999998765
No 20
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.38 E-value=1.1e-12 Score=147.26 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=78.5
Q ss_pred ceEEEEEEeCCCC-CeEEEeccCCCCCccEEEcCCCCCce-----EeCCccccccccEEEEeCCcceEEEEeCCCCCccc
Q 009134 176 SCLSLEVVSGPSR-GIRCSVQSANASRLPLTLGRVSPSDV-----LLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTL 249 (542)
Q Consensus 176 ~~~~L~v~~G~~~-g~~~~l~~~~~~~~~~~IGR~~~~di-----~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~ 249 (542)
..|.|+....... -..++|.... +.|++|||.+.||+ +|+|+.||+.||+|.++++ .|+|+||+|+||||
T Consensus 532 ~~w~l~~~~~~~~~~~~~~l~~~~--~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~--~~~~~Dl~S~nGT~ 607 (668)
T PLN02927 532 GEWYLIPHGDDCCVSETLCLTKDE--DQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG--AFFLMDLRSEHGTY 607 (668)
T ss_pred CCeEEEecCCCCcccceeeeecCC--CCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC--EEEEEECCCCCccE
Confidence 3677777643332 3457772221 22899999999995 9999999999999999998 99999999999999
Q ss_pred cCCcc---ccCCCCCCCCCCCceecCCCCEEEecccc
Q 009134 250 LNSQP---INHPDSGSRHWGKPMELTSGDIITLGTTS 283 (542)
Q Consensus 250 vNg~~---v~~p~~~~~~~~~~~~L~~GD~I~lG~~~ 283 (542)
|||.+ +..| |+.++.|++||+|+||...
T Consensus 608 v~~~~~~r~~~~------p~~~~~l~~~d~I~~g~~~ 638 (668)
T PLN02927 608 VTDNEGRRYRAT------PNFPARFRSSDIIEFGSDK 638 (668)
T ss_pred EeCCCCceEecC------CCCceEeCCCCEEEeCCCc
Confidence 97766 6532 6788999999999999953
No 21
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.33 E-value=4e-12 Score=121.85 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=67.0
Q ss_pred cEEEcCCCCCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCccccCCCCCCCCCCCceecCCCCEEEeccc
Q 009134 203 PLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTT 282 (542)
Q Consensus 203 ~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~ 282 (542)
.++|||+++++++++|..|||+||.|.++++ .|+++|++|+|||||||.++.. .+.|.+||.|.||.+
T Consensus 90 ~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~--~~~~~d~~S~nGt~vn~~~v~~----------~~~l~~gd~i~i~~~ 157 (191)
T COG1716 90 VTTIGRDPDNDIVLDDDVVSRRHAELRREGN--EVFLEDLGSTNGTYVNGEKVRQ----------RVLLQDGDVIRLGGT 157 (191)
T ss_pred eEEeccCCCCCEEcCCCccccceEEEEEeCC--ceEEEECCCCcceEECCeEccC----------cEEcCCCCEEEECcc
Confidence 5899999999999999999999999999999 9999999999999999999994 399999999999999
Q ss_pred cc
Q 009134 283 SS 284 (542)
Q Consensus 283 ~~ 284 (542)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 88
No 22
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.23 E-value=2.9e-11 Score=131.99 Aligned_cols=111 Identities=21% Similarity=0.321 Sum_probs=92.0
Q ss_pred cCCCceEEEEEEeCCCCCeEEEeccCCCCCccEEEcCCCCCceEeCCccccccccEEEEeCCc---------ceEEEEeC
Q 009134 172 ADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNK---------LKWELVDM 242 (542)
Q Consensus 172 ~~~~~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~---------~~~~l~Dl 242 (542)
.++.....|+++.+..+-..+.|.... -++|||...||+.+.++.|||.||.+.+...+ .+|+|.||
T Consensus 151 ~P~~~~~~lEvlKeg~iiet~~l~~~~----~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dl 226 (793)
T KOG1881|consen 151 GPPAAIFQLEVLKEGAIIETEDLKGAA----ACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDL 226 (793)
T ss_pred CCcccchhhhhhccCceeeeeecccce----eEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeec
Confidence 444457889999776665556666553 69999999999999999999999999997543 34999999
Q ss_pred CCCCccccCCccccCCCCCCCCCCCceecCCCCEEEeccccceeeeeccccc
Q 009134 243 GSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSETV 294 (542)
Q Consensus 243 gS~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~~~s~q~~ 294 (542)
|||+|||+|..++.. .....++.|+++++|+.+++|....+.+.
T Consensus 227 gsThgt~~NK~rvpp--------k~yir~~Vg~v~~fggsTrl~i~Qgp~eD 270 (793)
T KOG1881|consen 227 GSTHGTFLNKDRVPP--------KVYIRDRVGHVARFGGSTRLYIFQGPEED 270 (793)
T ss_pred cccccceeccccCCC--------cchhhhhHHHHHHhcCceEEEEeeCCCcC
Confidence 999999999999994 35588999999999999999877776664
No 23
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.20 E-value=1.8e-11 Score=92.45 Aligned_cols=51 Identities=37% Similarity=0.625 Sum_probs=46.8
Q ss_pred EEEcCCC-CCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCccc
Q 009134 204 LTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (542)
Q Consensus 204 ~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v 255 (542)
++|||.+ .|+++++++.||+.||+|.++.+ +.|+|+|++|+|||||||+++
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-CeEEEEECCCCCCeeECCEEC
Confidence 3799999 99999999999999999999887 249999999999999999875
No 24
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.08 E-value=9.8e-11 Score=112.93 Aligned_cols=128 Identities=21% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCCCCccccccccCCCCCCCc-----ccccCCCceEEEEEEeCCCCCeEEEeccCCCCCccEEEcCCC-CCceEeCCccc
Q 009134 148 EDQSPNLKLGLGIDRFPEFLP-----KAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEV 221 (542)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~V 221 (542)
++..-..+.....+++...+. .....+...|.|....+...+....+.... .+++||.- -.||.++++++
T Consensus 139 p~f~lsg~l~E~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs----~yL~gRerkIaDi~idhpSc 214 (293)
T KOG1882|consen 139 PSFELSGALLEDTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQS----CYLDGRERKIADIPIDHPSC 214 (293)
T ss_pred CchhhchhhhhhhcceeeEEEEecCCchhcCchhheecccccCCcccchheeeeee----eeecCceeeeeccCCCCccc
Confidence 343444444444445444332 223334458999988887777555555443 69999976 68999999999
Q ss_pred cccccEEEEeCC-----------cceEEEEeCCCCCccccCCccccCCCCCCCCCCCceecCCCCEEEeccccceee
Q 009134 222 SGKHALINWNPN-----------KLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (542)
Q Consensus 222 Sr~Ha~I~~~~~-----------~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~ 287 (542)
|++||.|.|..- ....||.||||+||||||.++|.. ...++|..+|+|+||-....++
T Consensus 215 SKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~Iep--------qRYyEL~ekDvlkfgfs~rEyv 283 (293)
T KOG1882|consen 215 SKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEP--------QRYYELREKDVLKFGFSSREYV 283 (293)
T ss_pred cccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCc--------hheeeeecCceeeeccchHHHH
Confidence 999999998631 135799999999999999999983 4569999999999996655544
No 25
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.06 E-value=2.4e-10 Score=118.90 Aligned_cols=95 Identities=26% Similarity=0.315 Sum_probs=76.4
Q ss_pred EEEEEEeCCC--CCe--EEEeccCCCCCccEEEcCCCCCceEeCC--ccccccccEEEEeCCcceEEEEeCCCCCccccC
Q 009134 178 LSLEVVSGPS--RGI--RCSVQSANASRLPLTLGRVSPSDVLLKD--SEVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (542)
Q Consensus 178 ~~L~v~~G~~--~g~--~~~l~~~~~~~~~~~IGR~~~~di~l~d--~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vN 251 (542)
++|.|+.... .|+ ...+..+ ..+|||+++||.+|+| ..||++||+|.++++ .|+|+|. |.||||||
T Consensus 3 lsL~vtn~~~l~sG~~aq~~f~~~-----~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg--~f~L~Dt-S~g~l~VN 74 (430)
T COG3456 3 LSLQVTNAQKLESGKAAQKLFDRG-----GGVIGRSPDCDWQIDDPERFVSKQHCTISYRDG--GFCLTDT-SNGGLLVN 74 (430)
T ss_pred eEEEEeccccCCCchhhhhhhhcC-----CcccccCCCCCccccCcccccchhheEEEecCC--eEEEEec-CCCceeec
Confidence 4566664322 232 2334444 5799999999999998 799999999999999 9999997 69999999
Q ss_pred CccccCCCCCCCCCCCc-eecCCCCEEEeccccceeee
Q 009134 252 SQPINHPDSGSRHWGKP-MELTSGDIITLGTTSSIHVQ 288 (542)
Q Consensus 252 g~~v~~p~~~~~~~~~~-~~L~~GD~I~lG~~~~~~~~ 288 (542)
|..+.. |++ .+|+.||+|.||.+.+.+..
T Consensus 75 gs~~~~--------g~~~~RLqqGd~i~iG~y~i~V~l 104 (430)
T COG3456 75 GSDLPL--------GEGSARLQQGDEILIGRYIIRVHL 104 (430)
T ss_pred ccccCC--------CCCccccccCCEEeeccEEEEEEe
Confidence 988874 555 99999999999999887644
No 26
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.91 E-value=2.6e-08 Score=114.66 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=100.9
Q ss_pred CCccCCCccccccccCCCCCCCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHHHHHH
Q 009134 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 392 (542)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d 392 (542)
.+.+..+.|.+.+... .++..+++|+||+|....|..++..+.+.+.+.+.... ++ ..++..+|
T Consensus 561 k~g~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~---------~~----~~ai~~lN 624 (764)
T TIGR02865 561 KDGELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF---------DR----EVAIKTVN 624 (764)
T ss_pred CCCCcccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC---------CH----HHHHHHHH
Confidence 4556789999877532 34456889999999777777788888777766543221 12 23444445
Q ss_pred HHhhhc---cCCCceEEEEEEecCCCcEEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcccCcccc
Q 009134 393 ASMNHH---YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRL 469 (542)
Q Consensus 393 ~~i~~~---~~GsTatv~li~~~~~~~l~l~vANvGDSRa~l~r~G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~~~~~Rv 469 (542)
..+... ...+|+.++++.....+ +.++|+|+++.|+.+++++.+++..+.|
T Consensus 625 ~~L~~~~~~~~faTl~l~~IDl~~g~---~~~~~aG~~p~~i~r~~~v~~i~s~~lP----------------------- 678 (764)
T TIGR02865 625 SILSLRSTDEKFSTLDLSVIDLYTGQ---AEFVKVGAVPSFIKRGAKVEVIRSSNLP----------------------- 678 (764)
T ss_pred HHHHhCCCCCeEEEEEEEEEECCCCe---EEEEecCCCceEEEECCEEEEecCCCce-----------------------
Confidence 444322 23455555555433333 6689999999999999999888754422
Q ss_pred cCcccccccCcccccccCCCcCccceeeeeEeeecCCCcEEEEEcCCCCCCCCHHH-----HHHHHHh
Q 009134 470 CGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKK-----AIQLVVQ 532 (542)
Q Consensus 470 ~Gl~lSRalGD~~~k~~~~~v~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~e-----i~~iv~~ 532 (542)
+| +..++++. ..+....+||++|++|||+||..++++ +.+++.+
T Consensus 679 --------lG----------il~~~~~~-~~~~~L~~GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~ 727 (764)
T TIGR02865 679 --------IG----------ILDEVDVE-LVRKKLKNGDLIVMVSDGVLEGEKEVEGKVLWLVRKLKE 727 (764)
T ss_pred --------eE----------eccCCccc-eEEEEeCCCCEEEEECCCCCcCCcccccHHHHHHHHHHh
Confidence 12 11112221 124566689999999999999876433 5555543
No 27
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.56 E-value=2.4e-06 Score=81.47 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCceEEEEecCCCcchhhhHHHHHHHHHHHHHHhhhhHHhhhcccccHHHHHHHHHHHHHHHhhhccCCCceEEEEEEec
Q 009134 333 DKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHHYEGCTATVLLVWAD 412 (542)
Q Consensus 333 ~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d~~i~~~~~GsTatv~li~~~ 412 (542)
++..++.|+|+.|-.-.|.+.+..+...+...+... .++.+++..+-..+...+......+|++++.+...
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~---------~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~ 72 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG---------LDPEELLEALNRRLYRDLKGDNRYATACYAIIDPE 72 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT---------TSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETT
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHhhhccccceEEEEEeccc
Confidence 345678999999955555566666666665544321 12344444333333222222223445444444333
Q ss_pred CCCcEEEEEEEeccceEEEEeC--CeEEEcCCCCCCCCHHHHHHHHHcCCCcccCcccccCcccccccCcccccccCCCc
Q 009134 413 GNANIFAQCANVGDSACVMNVD--GKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARF 490 (542)
Q Consensus 413 ~~~~l~l~vANvGDSRa~l~r~--G~~~qLT~DH~~~~~~E~~RI~~~Gg~i~~~~~Rv~Gl~lSRalGD~~~k~~~~~v 490 (542)
.+. ++++|+|+++++++++ +....+.....+ +| +
T Consensus 73 ~~~---l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~-------------------------------lG----------~ 108 (193)
T PF07228_consen 73 TGT---LTYANAGHPPPLLLRPGGREIEQLESEGPP-------------------------------LG----------I 108 (193)
T ss_dssp TTE---EEEEEESSSEEEEEETTCTEEEEETCSSBB-------------------------------CS----------S
T ss_pred ceE---EEEeCCCCCCEEEEeccccceeecccCccc-------------------------------ee----------e
Confidence 322 6699999999999998 344444332211 23 1
Q ss_pred CccceeeeeEeeecCCCcEEEEEcCCCCCCCCHH
Q 009134 491 SAEPYISPVVHIDQASKAFALLASDGFWDVISVK 524 (542)
Q Consensus 491 ~~~P~I~~~~~~~~~~~d~lVLaSDGLwD~ls~~ 524 (542)
....++. ...+....+|.|+|+||||+|....+
T Consensus 109 ~~~~~~~-~~~~~l~~gd~l~l~TDGl~e~~~~~ 141 (193)
T PF07228_consen 109 FEDIDYQ-EQEIQLEPGDRLLLYTDGLFEALNED 141 (193)
T ss_dssp SCTTCEE-EEEEE--TTEEEEEECHHHCTTTCHH
T ss_pred ecccccc-ceEEEeccccEEEEeCCChhhccCCc
Confidence 1122222 22566778999999999999998544
No 28
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.48 E-value=8e-08 Score=95.85 Aligned_cols=111 Identities=24% Similarity=0.381 Sum_probs=87.2
Q ss_pred CCCcccccC-CCceEEEEEEeCCC-CCeEEEeccCCCCCccEEEcCCC-CCceEeCCccccccccEEEEeCCcceEEEEe
Q 009134 165 EFLPKAIAD-QRSCLSLEVVSGPS-RGIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVD 241 (542)
Q Consensus 165 ~~~p~~~~~-~~~~~~L~v~~G~~-~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~D 241 (542)
.+-+..|+. ++..+.|.+..|.. +-..+.+... .+.+||.. .||++|++.++||.||.+.+......++|.|
T Consensus 4 ~~~~p~wA~kpp~g~hldv~k~d~li~kl~iddkr-----~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lid 78 (337)
T KOG1880|consen 4 NFDPPSWAGKPPAGLHLDVVKGDKLIQKLIIDDKR-----RYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLID 78 (337)
T ss_pred cCCCCCcccCCCCCCceeeeecchhHHHHHhhhhh-----hhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEE
Confidence 344444543 34467777776654 3334445555 69999998 8999999999999999999977656799999
Q ss_pred CCCCCccccCCccccCCCCCCCCCCCceecCCCCEEEeccccceeee
Q 009134 242 MGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (542)
Q Consensus 242 lgS~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~~ 288 (542)
|||+.|||+...++.. ..+++|..|..+++|..+..+..
T Consensus 79 l~s~hgtf~g~~rL~~--------~~p~~l~i~~~~~fgasTr~y~l 117 (337)
T KOG1880|consen 79 LGSTHGTFLGNERLEP--------HKPVQLEIGSTFHFGASTRIYLL 117 (337)
T ss_pred ccCCcceeeeeeeecc--------CCCccccCCceEEEeccceeeee
Confidence 9999999999988883 57899999999999998877643
No 29
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=98.17 E-value=5.3e-06 Score=89.40 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=78.6
Q ss_pred EEEEEEeCCCCCeEEEeccCCCCCccEEEc-CCCCCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCcccc
Q 009134 178 LSLEVVSGPSRGIRCSVQSANASRLPLTLG-RVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPIN 256 (542)
Q Consensus 178 ~~L~v~~G~~~g~~~~l~~~~~~~~~~~IG-R~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v~ 256 (542)
+.|+|+.|+..|..++|..+ .++|| ++++|||++.|+.||++|++|....+ ++.+.+ +..+.++||.++.
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g-----~~~iG~~~~~~di~L~d~~~~~~h~~l~v~~~--~~~l~~--~~~~~~~~g~~~~ 71 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEG-----NLVLGTDAADCDIVLSDGGIAAVHVSLHVRLE--GVTLAG--AVEPAWEEGGVLP 71 (410)
T ss_pred CEEEEecCCCCCcEEECCCC-----ceEeccCCCCcEEEeCCCCccchheEEEEcCc--eEEEec--CCcceeECCcccc
Confidence 46899999999999999998 79999 99999999999999999999999988 888886 4677899994433
Q ss_pred CCCCCCCCCCCceecCCCCEEEeccccceeee
Q 009134 257 HPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (542)
Q Consensus 257 ~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~~ 288 (542)
. .....|..+..+.+|+..+.+-.
T Consensus 72 ~--------~~g~~l~~~~~l~~g~~~~~~g~ 95 (410)
T TIGR02500 72 D--------EEGTPLPSGTPLLVAGVAFALGE 95 (410)
T ss_pred c--------CCCCccCCCCceecceeEEeccC
Confidence 2 23366888888888888777743
No 30
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.00021 Score=75.23 Aligned_cols=79 Identities=30% Similarity=0.317 Sum_probs=66.3
Q ss_pred cEEEcCCCCCceEeCCccccccccEEEEe-------------CCcceEEEEeCCCCCccccCCccccCCCCCCCCCCCce
Q 009134 203 PLTLGRVSPSDVLLKDSEVSGKHALINWN-------------PNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (542)
Q Consensus 203 ~~~IGR~~~~di~l~d~~VSr~Ha~I~~~-------------~~~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~~~ 269 (542)
.+++||.+.||..+....+|.+|..|..- ..+..+++.|. |+||||||.+.+.+ +...
T Consensus 65 ~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k--------~~~r 135 (475)
T KOG0615|consen 65 EFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGK--------GLSR 135 (475)
T ss_pred eEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhc--------cccc
Confidence 79999999999999998899999888654 12256899997 99999999999986 6778
Q ss_pred ecCCCCEEEeccccceeeeec
Q 009134 270 ELTSGDIITLGTTSSIHVQIT 290 (542)
Q Consensus 270 ~L~~GD~I~lG~~~~~~~~~s 290 (542)
.|.+||+|.||-.....+.+.
T Consensus 136 ~lkN~dei~is~p~~~~~v~~ 156 (475)
T KOG0615|consen 136 ILKNGDEISISIPALKIFVFE 156 (475)
T ss_pred cccCCCEEEeccchhheeeee
Confidence 899999999998877655443
No 31
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.34 E-value=0.0075 Score=69.59 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=63.6
Q ss_pred EEEeccCCCCCccEEEcCCC---CCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCccccCCCCCCCCCCC
Q 009134 191 RCSVQSANASRLPLTLGRVS---PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGK 267 (542)
Q Consensus 191 ~~~l~~~~~~~~~~~IGR~~---~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~ 267 (542)
.|.|..+ ..+|||.+ ..||+|....|--+||.|.-.++..-+.|.-.+ ---|||||+.|..
T Consensus 471 lY~ikeG-----~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e-~aetyVNGk~v~e---------- 534 (1221)
T KOG0245|consen 471 LYYIKEG-----ETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCE-DAETYVNGKLVTE---------- 534 (1221)
T ss_pred EEEeccC-----ceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccCC-ccceeEccEEcCC----------
Confidence 4567777 68999976 688999999999999999998873336666543 4569999999996
Q ss_pred ceecCCCCEEEeccccc
Q 009134 268 PMELTSGDIITLGTTSS 284 (542)
Q Consensus 268 ~~~L~~GD~I~lG~~~~ 284 (542)
|..|+.||+|.+|+...
T Consensus 535 p~qL~~GdRiilG~~H~ 551 (1221)
T KOG0245|consen 535 PTQLRSGDRIILGGNHV 551 (1221)
T ss_pred cceeccCCEEEEcCcee
Confidence 49999999999999653
No 32
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.02 E-value=0.031 Score=64.03 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=76.6
Q ss_pred eEEEEEE--eCCCCCeEEEeccCCCCCccEEEcCCCCC--ceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCC
Q 009134 177 CLSLEVV--SGPSRGIRCSVQSANASRLPLTLGRVSPS--DVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNS 252 (542)
Q Consensus 177 ~~~L~v~--~G~~~g~~~~l~~~~~~~~~~~IGR~~~~--di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg 252 (542)
...|+++ +|....+++.|..+ +.-+|....+ .|.|..+.|-.+||.|..-++ .+.|+-..--.-|||||
T Consensus 356 lPvLve~s~dG~~s~~ri~L~~~-----vtEVGs~~~~~~~iqLfGP~IqprHc~it~meG--VvTvTP~~~DA~t~VnG 428 (1629)
T KOG1892|consen 356 LPVLVELSPDGSDSRKRIRLQLS-----VTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEG--VVTVTPRSMDAETYVNG 428 (1629)
T ss_pred CcEEEEEcCCCCCcceeEEeccC-----ceeccccccCCcceeeeCCCCCccccchhhccc--eEEecccccchhhhccc
Confidence 3355555 56555578999888 7899998844 699999999999999999887 88888875445699999
Q ss_pred ccccCCCCCCCCCCCceecCCCCEEEecccc-ceeeee
Q 009134 253 QPINHPDSGSRHWGKPMELTSGDIITLGTTS-SIHVQI 289 (542)
Q Consensus 253 ~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~-~~~~~~ 289 (542)
.+|.+ +..|++|+.|.||... |.|+.-
T Consensus 429 h~isq----------ttiL~~G~~v~fGa~hsfkF~ds 456 (1629)
T KOG1892|consen 429 HRISQ----------TTILQSGMKVQFGASHSFKFVDS 456 (1629)
T ss_pred eecch----------hhhhccCCEEEeccceeEEecCC
Confidence 99996 4889999999999864 455443
No 33
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=94.80 E-value=0.06 Score=58.44 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=71.6
Q ss_pred EEEEEeCCCCCeEEEeccCCCCCccEEEcCCC-CCceEeC------CccccccccEEEEeCCcceEEEEeCCCCCccccC
Q 009134 179 SLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLK------DSEVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (542)
Q Consensus 179 ~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~------d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vN 251 (542)
.+-|+-|... .+.+.+. .+++||+. ++.|-|+ ...|||+.|.|...++ +.|+|..+| .--.|||
T Consensus 432 AiAvL~Gr~s--kh~mrk~-----EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~-GsF~IkNlG-K~~I~vn 502 (547)
T KOG2293|consen 432 AIAVLYGRFS--KHYMRKK-----EVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND-GSFFIKNLG-KRSILVN 502 (547)
T ss_pred eeEEEechhh--HhhhcCc-----ceEeeccCCCcceeeeccccCccceeeccceeEEeccC-CcEEeccCc-ceeEEeC
Confidence 3555556432 3455555 69999998 3333332 3689999999999776 589999998 6788999
Q ss_pred CccccCCCCCCCCCCCceecCCCCEEEeccccceee
Q 009134 252 SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (542)
Q Consensus 252 g~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~ 287 (542)
|.++.. |+.+.|.+..+|.|-+..|+|.
T Consensus 503 g~~l~~--------gq~~~L~~nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 503 GGELDR--------GQKVILKNNCLVEIRGLRFIFE 530 (547)
T ss_pred CccccC--------CceEEeccCcEEEEccceEEEe
Confidence 999995 8889999999999999998884
No 34
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=94.37 E-value=1.2 Score=47.32 Aligned_cols=32 Identities=9% Similarity=0.319 Sum_probs=23.6
Q ss_pred eeecCCCcEEEEEcCCCCC-------CCCHHHHHHHHHh
Q 009134 501 HIDQASKAFALLASDGFWD-------VISVKKAIQLVVQ 532 (542)
Q Consensus 501 ~~~~~~~d~lVLaSDGLwD-------~ls~~ei~~iv~~ 532 (542)
......||.+|+.|||+.+ .+..+...+++..
T Consensus 290 ~~~l~~gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~ 328 (367)
T COG2208 290 SLQLEPGDLLVLYTDGVTEARNSDGEFFGLERLLKILGR 328 (367)
T ss_pred eEEecCCCEEEEEcCCeeeeecCCccEecHHHHHHHHHH
Confidence 4445569999999999999 4556666666664
No 35
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.03 E-value=0.1 Score=58.01 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=66.6
Q ss_pred eEEEeccCCCCCccEEEcCCCCCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCccccCCCCCCCCCCCce
Q 009134 190 IRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (542)
Q Consensus 190 ~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~~~ 269 (542)
..++|..+ .++|||.|.- .|.|..+||+..++..+-+++.+.|.-|| .|.+-|||+.+.+ +...
T Consensus 25 ~~~~~~~~-----~~~~gr~pet--~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~~~~~--------~~~~ 88 (526)
T TIGR01663 25 HFIHLDAG-----ALFLGRGPET--GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGLELKP--------GGEG 88 (526)
T ss_pred CeeccCCC-----ceEEccCccc--ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCceEecC--------CCee
Confidence 45666655 6889999864 67899999999999998887788899998 6999999999985 7889
Q ss_pred ecCCCCEEEeccccc
Q 009134 270 ELTSGDIITLGTTSS 284 (542)
Q Consensus 270 ~L~~GD~I~lG~~~~ 284 (542)
.|++||.+.|=.-..
T Consensus 89 ~l~~g~~l~~v~~~~ 103 (526)
T TIGR01663 89 ELGHGDLLEIVNGLH 103 (526)
T ss_pred eecCCCEEEEecccc
Confidence 999999998755444
No 36
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.66 E-value=1 Score=52.20 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=63.6
Q ss_pred cEEEcCCCCCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCccccCCCCCCCCCCCceecCCCCEEEeccc
Q 009134 203 PLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTT 282 (542)
Q Consensus 203 ~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~ 282 (542)
..+||-...-||++..-.+=++||.|..+.+ +..++.-+-++ -+||||..+.. +..|.+||+|-.|..
T Consensus 468 ~tlig~~~~~~i~l~glgi~p~h~vidI~~d-g~l~~~p~~~~-R~~VNGs~v~~----------~t~L~~GdRiLwGnn 535 (1714)
T KOG0241|consen 468 HTLIGLFKSQDIQLSGLGIQPKHCVIDIESD-GELRLTPLLNA-RSCVNGSLVCS----------TTQLWHGDRILWGNN 535 (1714)
T ss_pred ceeeccccCcceeeecCcccCccceeeeccC-CcEEecccccc-eeeecCceecc----------ccccccCceEEeccc
Confidence 3689988899999999999999999999887 34888887655 79999999885 489999999999999
Q ss_pred cceeeee
Q 009134 283 SSIHVQI 289 (542)
Q Consensus 283 ~~~~~~~ 289 (542)
.|.-+-.
T Consensus 536 HFFrvN~ 542 (1714)
T KOG0241|consen 536 HFFRVNL 542 (1714)
T ss_pred ceEEecC
Confidence 8765543
No 37
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=82.86 E-value=3.6 Score=43.98 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=64.6
Q ss_pred ceEEEEEEeCCCCCeEEEeccCCCCCccEEEcCCCCCceEeCCccccccccEEEEeCCcceEEEEeCCCCCccccCCccc
Q 009134 176 SCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (542)
Q Consensus 176 ~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v 255 (542)
..++|+.+.|+..|+.+.|..+ .+++|=. .|||.++=+. +.-..+..+++ +.++.- +.--++|||.+.
T Consensus 3 ~~~Klr~Lng~L~GrEl~Lp~G-----~~tlG~~-gcDi~lpL~~--~~~~~L~i~e~--gi~l~~--~~~~vwVnG~~~ 70 (395)
T PRK15367 3 SSWKIRFLGHVLQGREVWLNEG-----NLSLGEK-GCDICIPLTI--NEKIILREQAD--SLFVDA--GKARVRVNGRRF 70 (395)
T ss_pred cceeeeecCCcccCcEEecCCC-----ceeecCC-CceEEEECCC--CCEEEEEEcCC--cEEEec--CCceEEECCEEc
Confidence 4689999999999999999998 7999985 4999886543 33344555666 676642 123579999987
Q ss_pred cCCCCCCCCCCCceecCCCCEEEecccccee
Q 009134 256 NHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (542)
Q Consensus 256 ~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~ 286 (542)
.. + .+|--+-.|.+.+..+.+
T Consensus 71 ~~--------~--~~LPl~q~Ie~aG~~~vl 91 (395)
T PRK15367 71 NP--------N--KPLPSSGVLQVAGVAIAF 91 (395)
T ss_pred CC--------C--CCCCCcchhhhcceEEEe
Confidence 64 2 446667777777777665
No 38
>PF15102 TMEM154: TMEM154 protein family
Probab=82.59 E-value=1.3 Score=40.79 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhcccCccCCCCCCC
Q 009134 13 LLMLILILLFIFIACKPWRFFFPSYRS 39 (542)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (542)
|..||++++++++.||+||.-..|++.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~~~ss~ 94 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQEPSSQ 94 (146)
T ss_pred HHHHHHHHHHheeEEeecccCCCCccc
Confidence 334445556777779999976544333
No 39
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=63.52 E-value=3.4 Score=37.33 Aligned_cols=18 Identities=11% Similarity=0.665 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 009134 10 FTVLLMLILILLFIFIAC 27 (542)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (542)
||+||+++++|+|++|+|
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 40
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=62.18 E-value=5.1 Score=34.52 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCCCCC
Q 009134 9 VFTVLLMLILILLFIFIACKPWRFFFPSYRS 39 (542)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (542)
.|++..+++.+|+++..-|.-||.++.|++-
T Consensus 22 GVv~~al~~SlLIalaaKC~~~~k~~~SY~H 52 (102)
T PF15176_consen 22 GVVVTALVTSLLIALAAKCPVWYKYLASYRH 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 3444444455555555559999988777643
No 41
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=59.71 E-value=20 Score=40.44 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhcccCccCCC
Q 009134 12 VLLMLILILLFIFIACKPWRFFFP 35 (542)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (542)
++.|.|+++++|+...++||+...
T Consensus 397 f~~if~iva~ii~~~L~R~rr~~~ 420 (807)
T KOG1094|consen 397 FVAIFLIVALIIALMLWRWRRLLS 420 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444445566998865
No 42
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=50.87 E-value=21 Score=26.61 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCc
Q 009134 9 VFTVLLMLILILLFIFIACKPWR 31 (542)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (542)
.+.+++|+++.++++++|++|=+
T Consensus 13 ~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 13 SWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 35566777888999999998865
No 43
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.78 E-value=15 Score=34.64 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccCC
Q 009134 8 VVFTVLLMLILILLFIFIACKPWRFFF 34 (542)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (542)
...|.||+.+..++++.|++|-||.--
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345667777777777777777777553
No 44
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.56 E-value=16 Score=32.88 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCccCCCC
Q 009134 6 SIVVFTVLLMLILILLFIFIACKPWRFFFPS 36 (542)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (542)
.++++|+++.||+|++++++.-|+=|....+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P 33 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRRGLQP 33 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4678889999999999999999998876555
No 45
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=47.18 E-value=18 Score=31.47 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccC
Q 009134 8 VVFTVLLMLILILLFIFIACKPWRFF 33 (542)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (542)
...+++.|+.+++.+++|++||-++-
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~RP~s~R 78 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLRPSSLR 78 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcCchhhc
Confidence 34677788888888999999986543
No 46
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=44.89 E-value=11 Score=30.11 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=18.7
Q ss_pred CccccCCccccCCCCCCCCCCCceecCCCCEEEecccccee
Q 009134 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (542)
Q Consensus 246 NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~ 286 (542)
+..+|||+.... ....|++||+|.+++..+.+
T Consensus 33 g~V~VNGe~e~r---------rg~Kl~~GD~V~~~~~~~~V 64 (65)
T PF13275_consen 33 GEVKVNGEVETR---------RGKKLRPGDVVEIDGEEYRV 64 (65)
T ss_dssp HHHEETTB-------------SS----SSEEEEETTEEEEE
T ss_pred CceEECCEEccc---------cCCcCCCCCEEEECCEEEEE
Confidence 356899987774 34889999999998877654
No 47
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=43.77 E-value=21 Score=35.28 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 009134 9 VFTVLLMLILILLFIFIACK 28 (542)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (542)
-+++.+++|||++++.++|-
T Consensus 17 NiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHHhhhhee
Confidence 37777777888777777653
No 48
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=41.44 E-value=13 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCc
Q 009134 7 IVVFTVLLMLILILLFIFIACKPWR 31 (542)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (542)
.+++|.+.-+..+.++.+|++|.|-
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3457777778888999999999995
No 49
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=38.79 E-value=17 Score=26.41 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.7
Q ss_pred CccccCCccccCCCCCCCCCCCceecCCCCEE
Q 009134 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDII 277 (542)
Q Consensus 246 NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I 277 (542)
++.+|||+.+..| ...+.+||+|
T Consensus 26 g~V~VNg~~v~~~---------~~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDP---------SYIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESST---------TSBESTTEEE
T ss_pred CEEEECCEEEcCC---------CCCCCCcCCC
Confidence 5789999999974 3788899886
No 50
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=38.25 E-value=37 Score=38.69 Aligned_cols=71 Identities=17% Similarity=-0.019 Sum_probs=56.5
Q ss_pred CCccccccccEEEEeCCcceEEEEeCCCCCccccCCccccCCCCCCCCCCCceecCCCCEEEeccccceeeeecccc
Q 009134 217 KDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSET 293 (542)
Q Consensus 217 ~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~~~s~q~ 293 (542)
.-..++|.|+.|.++...+.|++.+.| +||..++|..+.- +.-..+..|..|-+...|.....+.......
T Consensus 123 ~~k~~~~~~~sIr~Nls~~~a~~~i~g-~~g~~~~g~~~~i-----gP~~~~~~l~~g~~~~~~~~~~~~~~p~~~~ 193 (610)
T COG5025 123 YAKVVSRWQNSIRHNLSLNDAFIKIEG-RNGAKVKGHFWSI-----GPGHETQFLKSGLRLDGGGKQMMFTLPSSTE 193 (610)
T ss_pred cccccchhhhhhhcccccCceEEEEec-cCCccccceeecc-----CCCccceeeccccccccccccccccCccccc
Confidence 347899999999999887899999998 7999999998873 1122357899999999999988876554444
No 51
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=38.14 E-value=24 Score=26.97 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.3
Q ss_pred CccccCCccccCCCCCCCCCCCceecCCCCEEEe
Q 009134 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (542)
Q Consensus 246 NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~l 279 (542)
+..+|||+.+.+| .+.|..||.|.+
T Consensus 34 G~V~VNg~~~~~~---------~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRR---------GKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCC---------CCCCCCCCEEEe
Confidence 4578899887542 378999999976
No 52
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=37.82 E-value=44 Score=23.37 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 009134 4 RESIVVFTVLLMLILILLFIFI 25 (542)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (542)
-|.+..++.+||+++.++-+++
T Consensus 9 fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 9 FEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888777665554
No 53
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=36.77 E-value=46 Score=23.66 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCc
Q 009134 6 SIVVFTVLLMLILILLFIFIACKPWR 31 (542)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (542)
+|++-+++-|.++++.+..|||..-|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666667777777888888876443
No 54
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.48 E-value=47 Score=26.11 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCccC
Q 009134 7 IVVFTVLLMLILILLFIFIACKPWRFF 33 (542)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (542)
+-++.++.|.+.++..++||++|-+..
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 345777778888888999999998855
No 55
>PRK11507 ribosome-associated protein; Provisional
Probab=35.37 E-value=33 Score=27.81 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=24.7
Q ss_pred CccccCCccccCCCCCCCCCCCceecCCCCEEEecccccee
Q 009134 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (542)
Q Consensus 246 NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~ 286 (542)
+...|||+.-.+ ....|++||+|.+.+..+.+
T Consensus 37 g~V~VNGeve~r---------RgkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETR---------KRCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEecc---------cCCCCCCCCEEEECCEEEEE
Confidence 467899976654 23789999999999977654
No 56
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=34.67 E-value=41 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.461 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 009134 5 ESIVVFTVLLMLILILLFIFIA 26 (542)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (542)
.+..+++.++++++++++++|+
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776
No 57
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=34.27 E-value=32 Score=30.55 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhcccCc
Q 009134 14 LMLILILLFIFIACKPWR 31 (542)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (542)
||+++++++.+|..||-|
T Consensus 7 l~~vv~~~i~yf~iRPQk 24 (113)
T PRK06531 7 IMFVVMLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHHHHHHheechHH
Confidence 333333333334444443
No 58
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.14 E-value=56 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCc
Q 009134 9 VFTVLLMLILILLFIFIACKPWR 31 (542)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (542)
.+.+++|++.++++++++++|=|
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 46667777777788888888765
No 59
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=29.23 E-value=62 Score=26.45 Aligned_cols=18 Identities=39% Similarity=0.742 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 009134 11 TVLLMLILILLFIFIACK 28 (542)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (542)
+..++++++++++++.|+
T Consensus 7 ~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhheeEEEEE
Confidence 333444444444555554
No 60
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=28.52 E-value=64 Score=24.48 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=5.7
Q ss_pred ccCcccCCc
Q 009134 44 KSGELERPL 52 (542)
Q Consensus 44 ~~~~~~~~~ 52 (542)
|-+|+++|.
T Consensus 30 QfDDle~~a 38 (51)
T TIGR00847 30 QYDDLKGAA 38 (51)
T ss_pred CCCCCccHH
Confidence 447777773
No 61
>PHA00007 E cell lysis protein
Probab=27.12 E-value=79 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 009134 5 ESIVVFTVLLMLILILLFIFIA 26 (542)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (542)
-.|.+|+++|-||+=.++|.|+
T Consensus 7 ~~~LAFLLLLSLlLPSLLImFI 28 (91)
T PHA00007 7 SDTLAFLLLLSLLLPSLLIMFI 28 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999998888888887
No 62
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=26.94 E-value=35 Score=27.77 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.2
Q ss_pred CCCcEEEEEcCCCCCCCCHH
Q 009134 505 ASKAFALLASDGFWDVISVK 524 (542)
Q Consensus 505 ~~~d~lVLaSDGLwD~ls~~ 524 (542)
..|+.+|+|+||+|=.+...
T Consensus 25 ~~G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 25 RPGHRLLVASNGVFLEVRRP 44 (72)
T ss_pred cCCcEEEEecCcEEEEEech
Confidence 37899999999999766543
No 63
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=26.82 E-value=60 Score=26.53 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=26.0
Q ss_pred CccccCCccccCCCCCCCCCCCceecCCCCEEEeccccceee
Q 009134 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (542)
Q Consensus 246 NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~~~~~~~ 287 (542)
+..+|||+.-.+ ....|++||.|.+.+..+.+.
T Consensus 37 g~V~vNGe~EtR---------RgkKlr~gd~V~i~~~~~~v~ 69 (73)
T COG2501 37 GEVKVNGEVETR---------RGKKLRDGDVVEIPGQRYQVV 69 (73)
T ss_pred CeEEECCeeeec---------cCCEeecCCEEEECCEEEEEE
Confidence 578999987664 237899999999998876654
No 64
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.25 E-value=95 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCC
Q 009134 9 VFTVLLMLILILLFIFIACKPWRFFFPS 36 (542)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (542)
.+.+.+|.++++++-|.-||--|+-.+|
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3444555555555555667665554444
No 65
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.43 E-value=71 Score=27.40 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 009134 12 VLLMLILILLF 22 (542)
Q Consensus 12 ~~~~~~~~~~~ 22 (542)
+|.++|+++||
T Consensus 8 lL~l~LA~lLl 18 (95)
T PF07172_consen 8 LLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 66
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=23.29 E-value=52 Score=30.17 Aligned_cols=23 Identities=26% Similarity=0.722 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCcc
Q 009134 10 FTVLLMLILILLFIFIACKPWRF 32 (542)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (542)
++++++++++++++++..|+|++
T Consensus 25 ll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 25 LLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555556666666677777765
No 67
>smart00363 S4 S4 RNA-binding domain.
Probab=23.25 E-value=72 Score=22.96 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=20.2
Q ss_pred CCccccCCccccCCCCCCCCCCCceecCCCCEEEecc
Q 009134 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGT 281 (542)
Q Consensus 245 ~NGT~vNg~~v~~p~~~~~~~~~~~~L~~GD~I~lG~ 281 (542)
.++.+|||+.+..| ...+..||.|.+-.
T Consensus 25 ~g~i~vng~~~~~~---------~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGKKVTKP---------SYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCEEecCC---------CeEeCCCCEEEEcc
Confidence 34678999888432 37789999988743
No 68
>PF15102 TMEM154: TMEM154 protein family
Probab=22.17 E-value=59 Score=30.14 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCCCC
Q 009134 10 FTVLLMLILILLFIFIACKPWRFFFPS 36 (542)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (542)
++.++.|+++|++++|+..-+|+-..-
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEeecccC
Confidence 344455566777888888888776554
No 69
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.84 E-value=1.5e+02 Score=19.70 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 009134 6 SIVVFTVLLMLILILLFIF 24 (542)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (542)
.|+.++++++||--+++++
T Consensus 5 vi~G~ilv~lLlgYLvyAL 23 (29)
T PRK14748 5 VITGVLLVFLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444443
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.46 E-value=76 Score=28.54 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=9.1
Q ss_pred HHHHHHHHhhcccCccC
Q 009134 17 ILILLFIFIACKPWRFF 33 (542)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (542)
+++++||+|.|||-|--
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44456666777665544
No 71
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=20.18 E-value=1.3e+02 Score=28.95 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCCCCCCCCcccccCcccC
Q 009134 10 FTVLLMLILILLFIFIACKPWRFFFPSYRSRSIIKSGELER 50 (542)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (542)
+++.|-++++++.++.+.|=|||++...+..+..+..+..+
T Consensus 9 ~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~~~~~~P~ 49 (183)
T KOG1110|consen 9 FFTPLALALLIFLLFVGLKLSRFKFRRDSEKSDGSTEEPPK 49 (183)
T ss_pred hhhhHHHHHHHHHHHhheeeeeeeccccccccccCCCCCCc
Confidence 34444444455555677888888666555666666555444
Done!