BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009135
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 123/266 (46%), Gaps = 17/266 (6%)
Query: 162 TTHTPQFLGL--PQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSH 219
TTHT FL L G W G G+ V++ +D+GI P SF DD +P
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG----LGQDVIVAVLDSGIWPESASFQDDGMPE---IPKR 53
Query: 220 FSGICEVTRDFPSGSCNRKLIGARHFAASAITRG-IFNSSQDYASPFDGDGHGSHTASVA 278
+ GIC+ F + CNRKLIGA +F + N + + A D DGHG+H AS+
Sbjct: 54 WKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSAR--DTDGHGTHCASIT 111
Query: 279 AGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXS 338
AGN V G+ G A G+APR+ +AVYK + G F S
Sbjct: 112 AGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMIS 170
Query: 339 LSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
+S P + + I +A A G+ V +AGN GP S+++ SPWI V +
Sbjct: 171 ISYGYRFIP----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASG 226
Query: 399 SHDRIYTNSIILGNSLTISGVGLAPG 424
DR + ++ LGN L I G L P
Sbjct: 227 HTDRTFAGTLTLGNGLKIRGWSLFPA 252
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 139/314 (44%), Gaps = 25/314 (7%)
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TT + FLG P + +V+G +DTGI P PSF D E P P +
Sbjct: 1 TTRSWDFLGFP----LTVPRRSQVESNIVVGVLDTGIWPESPSFDD---EGFSPPPPKWK 53
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
G CE + +F CNRK+IGAR + I R I S D P D +GHG+HTAS AAG
Sbjct: 54 GTCETSNNF---RCNRKIIGARSYH---IGRPI--SPGDVNGPRDTNGHGTHTASTAAGG 105
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSI 341
+ G G A G P + IA YK + G SLS+
Sbjct: 106 LVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSV 164
Query: 342 -TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400
N R F + I + A + GI +AGN GP+ + +S SPW+ +V A++
Sbjct: 165 GGANPR----HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTM 220
Query: 401 DRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALXXXXXXXDDMYVGECQDSSNFN 460
DR + + +GN + GV + ++ Y L+S + C D S N
Sbjct: 221 DRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRF---CTDKS-VN 276
Query: 461 QDLVQGNLLICSYS 474
+L++G +++C S
Sbjct: 277 PNLLKGKIVVCEAS 290
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKAL----YKSFGGF 318
+P+D +GHG+H AS+AAG G GMAP + + K L S
Sbjct: 173 TPYDDNGHGTHVASIAAGTG-------AASNGKYKGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 319 XXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNT 378
+LS+ ++ G + + A+ +A AG+ VV AAGN+
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSDGT----DSLSQAVNNAWDAGLVVVVAAGNS 281
Query: 379 GPSPKSMSS--FSPWIFTVGAASHDRIYTN 406
GP+ ++ S + + TVGA + T+
Sbjct: 282 GPNKYTVGSPAAASKVITVGAVDKYDVITD 311
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 84 LNNPRNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKL 143
L P+ +S +G + + +D I A KG +Y++ LI V P
Sbjct: 57 LELPQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIK--PTVVKPNPDMYK 114
Query: 144 SRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHP 203
R+ + + D+ + + GL Q+ E +G +++ +DTG+D THP
Sbjct: 115 IRKPGLNSTARDYGEELSN----ELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHP 170
Query: 204 SF 205
Sbjct: 171 DL 172
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 52/204 (25%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
+ G G+ I +DTG++ HP +++ E +DF G+
Sbjct: 23 SGGAGINIAVLDTGVNTNHPDLSNN---------------VEQCKDFTVGT--------- 58
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+F ++ T D GHG+H A A N G V G+AP +
Sbjct: 59 NFTDNSCT--------------DRQGHGTHVAGSALANGGTGSGVY--------GVAPEA 96
Query: 304 HIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSI--TPNRRPPGIATFFNPIDMAL 361
+ YK L G+ + + + N +D A
Sbjct: 97 DLWAYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAY 156
Query: 362 LSAAKAGIFVVQAAGNTGPSPKSM 385
G+ ++ AAGN+GP P S+
Sbjct: 157 ----DKGVLIIAAAGNSGPKPGSI 176
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 47/202 (23%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
T G G+ I +DTG++ +HP ++ E +DF
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVNN---------------VEQCKDF------------- 54
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+ T I NS D +GHG+H A G + G G+AP +
Sbjct: 55 ----TGATTPINNSCTDR------NGHGTHVA-------GTALADGGSDQAGIYGVAPDA 97
Query: 304 HIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLS 363
+ YK L S G+ + +I G + + I A+
Sbjct: 98 DLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII--SMSLGSSANNSLISSAVNY 155
Query: 364 AAKAGIFVVQAAGNTGPSPKSM 385
A G+ +V AAGN+G S ++
Sbjct: 156 AYSKGVLIVAAAGNSGYSQGTI 177
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 47/202 (23%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
T G G+ I +DTG++ +HP ++ E +DF
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVNN---------------VEQCKDF------------- 54
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+ T I NS D +GHG+H A G + G G+AP +
Sbjct: 55 ----TGATTPINNSCTDR------NGHGTHVA-------GTALADGGSDQAGIYGVAPDA 97
Query: 304 HIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLS 363
+ YK L S G+ + +I G + + I A+
Sbjct: 98 DLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII--SMSLGSSANNSLISSAVNY 155
Query: 364 AAKAGIFVVQAAGNTGPSPKSM 385
A G+ +V AAGN+G S ++
Sbjct: 156 AYSKGVLIVAAAGNSGYSQGTI 177
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 58/155 (37%), Gaps = 58/155 (37%)
Query: 164 HTPQFLGLPQGAW-IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSG 222
+ PQ + PQ AW I EG G I +DTG+ HP A
Sbjct: 13 YGPQKIQAPQ-AWDIAEG------SGAKIAIVDTGVQSNHPDLAG--------------- 50
Query: 223 ICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNH 282
K++G F + N S +P +G+GHG+H A +AA
Sbjct: 51 ---------------KVVGGWDF--------VDNDS----TPQNGNGHGTHCAGIAA--- 80
Query: 283 GIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG 317
VT + G A G AP++ I + L S G
Sbjct: 81 ----AVTNNSTGIA-GTAPKASILAVRVLDNSGSG 110
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 58/155 (37%), Gaps = 58/155 (37%)
Query: 164 HTPQFLGLPQGAW-IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSG 222
+ PQ + PQ AW I EG G I +DTG+ HP A
Sbjct: 13 YGPQKIQAPQ-AWDIAEG------SGAKIAIVDTGVQSNHPDLAG--------------- 50
Query: 223 ICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNH 282
K++G F + N S +P +G+GHG+H A +AA
Sbjct: 51 ---------------KVVGGWDF--------VDNDS----TPQNGNGHGTHCAGIAA--- 80
Query: 283 GIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG 317
VT + G A G AP++ I + L S G
Sbjct: 81 ----AVTNNSTGIA-GTAPKASILAVRVLDNSGSG 110
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 87/251 (34%), Gaps = 63/251 (25%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
G I IDTG+D THP + K+I F
Sbjct: 32 GQEIAVIDTGVDYTHPDL------------------------------DGKVIKGYDFV- 60
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
DY P D + HG+H A +AA T + G A GMAP + I
Sbjct: 61 ----------DNDY-DPMDLNNHGTHVAGIAAAE-------TNNATGIA-GMAPNTRILA 101
Query: 308 YKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKA 367
+AL ++ G +LS+ G ++ A+ A
Sbjct: 102 VRALDRNGSGTLSDIADAIIYAADSGAEVINLSL-------GCDCHTTTLENAVNYAWNK 154
Query: 368 GIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS-HDRIYTNSIILGNSLTISGVGLAPGTD 426
G VV AAGN G S + + VGA +DR+ + N T V +APG D
Sbjct: 155 GSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLAS----FSNYGTWVDV-VAPGVD 209
Query: 427 KMYTLISALHA 437
+ T+ +A
Sbjct: 210 IVSTITGNRYA 220
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSF 205
E+AG+G + IDTGI+ +HP F
Sbjct: 27 ESAGQGSCVYVIDTGIEASHPEF 49
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSF 205
E+AG+G + IDTGI+ +HP F
Sbjct: 27 ESAGQGSCVYVIDTGIEASHPEF 49
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSF 205
E+AG+G + IDTGI+ +HP F
Sbjct: 27 ESAGQGSCVYVIDTGIEASHPEF 49
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 49/127 (38%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G G +IG IDTG HP A+ G +T D+ N
Sbjct: 40 GAGQIIGVIDTGXQVDHPDLAE-----------RIIGGVNLTTDYGGDETNFS------- 81
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSH 304
D +GHG+H A +VAA G VV G+AP++
Sbjct: 82 --------------------DNNGHGTHVAGTVAAAETGSGVV----------GVAPKAD 111
Query: 305 IAVYKAL 311
+ + KAL
Sbjct: 112 LFIIKAL 118
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 49/127 (38%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G G +IG IDTG HP A+ G +T D+ N
Sbjct: 40 GAGQIIGVIDTGCQVDHPDLAE-----------RIIGGVNLTTDYGGDETNFS------- 81
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSH 304
D +GHG+H A +VAA G VV G+AP++
Sbjct: 82 --------------------DNNGHGTHVAGTVAAAETGSGVV----------GVAPKAD 111
Query: 305 IAVYKAL 311
+ + KAL
Sbjct: 112 LFIIKAL 118
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 73/206 (35%), Gaps = 64/206 (31%)
Query: 177 IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236
+Q GY+ G V +G IDTGI +H +
Sbjct: 16 VQAQGYK--GANVKVGIIDTGIASSH--------------------------------TD 41
Query: 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA-SVAAGNHGIPVVVTGHHFGN 295
K++G F S + Y + DG+GHG+H A +VAA ++ V+
Sbjct: 42 LKVVGGASFV----------SGESYNT--DGNGHGTHVAGTVAALDNTTGVL-------- 81
Query: 296 ASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFN 355
G+AP + K L S G ++S+ P G
Sbjct: 82 --GVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSL---GGPSGSTALKQ 136
Query: 356 PIDMALLSAAKAGIFVVQAAGNTGPS 381
+D A S GI VV AAGN+G S
Sbjct: 137 AVDKAYAS----GIVVVAAAGNSGNS 158
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 49/127 (38%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G G +IG IDTG HP A+ G +T D+ N
Sbjct: 40 GAGQIIGVIDTGCQVDHPDLAE-----------RIIGGVNLTTDYGGDETNFS------- 81
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSH 304
D +GHG+H A +VAA G VV G+AP++
Sbjct: 82 --------------------DNNGHGTHVAGTVAAAETGSGVV----------GVAPKAD 111
Query: 305 IAVYKAL 311
+ + KAL
Sbjct: 112 LFIIKAL 118
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 49/127 (38%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G G +IG IDTG HP A+ G +T D+ N
Sbjct: 22 GAGQIIGVIDTGCQVDHPDLAE-----------RIIGGVNLTTDYGGDETNFS------- 63
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSH 304
D +GHG+H A +VAA G VV G+AP++
Sbjct: 64 --------------------DNNGHGTHVAGTVAAAETGSGVV----------GVAPKAD 93
Query: 305 IAVYKAL 311
+ + KAL
Sbjct: 94 LFIIKAL 100
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA N+ I V+ G+AP + + K L G
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGADGRGAISSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS 384
+LS+ P AT ++ A+ SA G+ VV A+GN+G S S
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSGASSIS 160
Query: 385 MSSFSPWIFTVGAASHDR 402
+ VGA +
Sbjct: 161 YPARYANAMAVGATDQNN 178
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA ++ I V+ G+AP + + K L S G
Sbjct: 58 DGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN+G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSG 155
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 182 YET-AGEGVVIGFIDTGIDPTHPSFADDASE 211
Y+T AG G + IDTG++ THP F A +
Sbjct: 26 YDTSAGAGACVYVIDTGVEDTHPDFEGRAKQ 56
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA ++ I V+ G+AP + + K L S G
Sbjct: 58 DGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNEG 155
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA N+ I V+ G+AP + + K L S G
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN+G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA N+ I V+ G+AP + + K L S GG
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGGGSNSSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN+G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA N+ I V+ G+AP + + K L S G
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN+G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSG 155
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 168 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 213
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 166 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 211
>pdb|2O01|B Chain B, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 732
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 376 GNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPG 424
G GP + S W +T+G +++ +YT +I L L +S + L G
Sbjct: 107 GALGPVNNAYSGVYQWWYTIGLRTNEDLYTGAIFL---LFLSAISLLAG 152
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 166 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 211
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA N+ I V+ G+AP + + K L S G
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN+G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSG 155
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 166 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 211
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 246 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 291
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA N+ I V+ G+AP + + K L S G
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN+G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSG 155
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 246 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 291
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 246 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 291
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 358 DMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIFTVGAA-SHDRI 403
DM ++ A AGI +V A+GN G PSP +++ P + VGA S+D I
Sbjct: 246 DM-IIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGAIDSNDNI 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,750,021
Number of Sequences: 62578
Number of extensions: 642991
Number of successful extensions: 1447
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1355
Number of HSP's gapped (non-prelim): 150
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)