Query 009135
Match_columns 542
No_of_seqs 385 out of 3007
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 20:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 7.4E-37 1.6E-41 311.9 23.2 234 158-399 1-235 (307)
2 KOG1153 Subtilisin-related pro 100.0 7.7E-37 1.7E-41 305.2 13.6 247 119-434 136-407 (501)
3 PTZ00262 subtilisin-like prote 100.0 1.7E-34 3.6E-39 308.3 17.3 202 183-420 312-538 (639)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 2.5E-32 5.5E-37 270.7 18.9 170 183-413 4-175 (255)
5 cd07491 Peptidases_S8_7 Peptid 100.0 1.1E-31 2.3E-36 264.4 18.7 181 186-420 2-191 (247)
6 cd07476 Peptidases_S8_thiazoli 100.0 2.7E-31 5.9E-36 264.7 20.5 182 175-414 2-184 (267)
7 cd07483 Peptidases_S8_Subtilis 100.0 3.1E-31 6.6E-36 268.1 20.9 211 187-419 1-237 (291)
8 cd07485 Peptidases_S8_Fervidol 100.0 4.7E-31 1E-35 264.7 22.0 207 175-421 2-215 (273)
9 cd05561 Peptidases_S8_4 Peptid 100.0 2E-30 4.4E-35 254.7 19.4 169 189-420 1-173 (239)
10 cd07496 Peptidases_S8_13 Pepti 100.0 3E-30 6.5E-35 260.5 20.9 143 263-420 66-219 (285)
11 cd07484 Peptidases_S8_Thermita 100.0 5.5E-30 1.2E-34 255.2 21.0 188 172-420 18-205 (260)
12 cd07497 Peptidases_S8_14 Pepti 100.0 2.2E-30 4.8E-35 262.9 18.0 202 186-414 1-231 (311)
13 cd04077 Peptidases_S8_PCSK9_Pr 100.0 6.3E-30 1.4E-34 254.1 19.5 172 183-419 21-198 (255)
14 cd07498 Peptidases_S8_15 Pepti 100.0 2.7E-29 5.8E-34 247.6 19.7 181 189-420 1-182 (242)
15 cd07481 Peptidases_S8_Bacillop 100.0 2.4E-29 5.2E-34 251.2 19.5 182 186-414 1-197 (264)
16 cd07475 Peptidases_S8_C5a_Pept 100.0 2.8E-29 6.1E-34 260.5 20.8 215 175-414 2-244 (346)
17 cd07489 Peptidases_S8_5 Peptid 100.0 4.8E-29 1E-33 255.0 20.3 192 174-414 4-198 (312)
18 cd07493 Peptidases_S8_9 Peptid 100.0 4.2E-29 9.1E-34 249.0 18.6 182 188-414 1-196 (261)
19 cd07477 Peptidases_S8_Subtilis 100.0 1.5E-28 3.3E-33 240.0 19.8 175 188-419 1-177 (229)
20 cd07487 Peptidases_S8_1 Peptid 100.0 1.4E-28 3.1E-33 245.4 19.1 180 186-414 1-190 (264)
21 cd07482 Peptidases_S8_Lantibio 100.0 3.2E-28 7E-33 246.7 18.4 188 189-416 2-216 (294)
22 cd07490 Peptidases_S8_6 Peptid 100.0 5.6E-28 1.2E-32 239.8 19.5 172 188-413 1-173 (254)
23 cd07473 Peptidases_S8_Subtilis 100.0 1.2E-27 2.6E-32 238.2 20.8 197 187-418 2-204 (259)
24 cd04843 Peptidases_S8_11 Pepti 100.0 4.4E-28 9.6E-33 242.6 16.2 185 172-420 4-209 (277)
25 cd05562 Peptidases_S53_like Pe 100.0 9.5E-28 2.1E-32 240.0 17.4 163 183-409 1-165 (275)
26 cd07480 Peptidases_S8_12 Pepti 100.0 1.7E-27 3.8E-32 241.7 19.4 187 182-420 3-219 (297)
27 cd04842 Peptidases_S8_Kp43_pro 100.0 1.4E-27 3.1E-32 241.9 17.8 189 182-414 2-211 (293)
28 cd04857 Peptidases_S8_Tripepti 99.9 1.9E-26 4.2E-31 239.0 21.9 137 265-413 182-338 (412)
29 cd07494 Peptidases_S8_10 Pepti 99.9 4.7E-27 1E-31 237.8 16.6 159 172-400 10-174 (298)
30 cd07474 Peptidases_S8_subtilis 99.9 1.5E-26 3.3E-31 234.6 19.7 177 186-399 1-182 (295)
31 cd04059 Peptidases_S8_Protein_ 99.9 1.1E-26 2.3E-31 236.1 15.9 195 173-420 29-234 (297)
32 cd07492 Peptidases_S8_8 Peptid 99.9 5.6E-26 1.2E-30 221.0 19.3 167 188-418 1-167 (222)
33 cd04847 Peptidases_S8_Subtilis 99.9 2.6E-26 5.7E-31 232.5 15.2 172 190-413 2-193 (291)
34 cd04848 Peptidases_S8_Autotran 99.9 8.9E-26 1.9E-30 225.1 18.6 182 185-413 1-202 (267)
35 cd07478 Peptidases_S8_CspA-lik 99.9 3.3E-26 7.2E-31 243.8 15.8 179 184-381 1-196 (455)
36 PF00082 Peptidase_S8: Subtila 99.9 2.5E-24 5.3E-29 216.7 15.6 181 190-414 1-187 (282)
37 KOG4266 Subtilisin kexin isozy 99.9 5.7E-25 1.2E-29 226.1 7.0 174 174-413 192-367 (1033)
38 cd00306 Peptidases_S8_S53 Pept 99.9 2.8E-21 6.1E-26 188.5 19.7 142 264-419 40-187 (241)
39 KOG1114 Tripeptidyl peptidase 99.8 1.4E-19 3E-24 194.3 13.0 137 267-414 309-464 (1304)
40 cd07488 Peptidases_S8_2 Peptid 99.8 4.5E-19 9.8E-24 174.3 14.1 125 264-407 33-167 (247)
41 KOG3526 Subtilisin-like propro 99.7 1.5E-17 3.3E-22 163.2 13.0 181 173-406 151-344 (629)
42 COG1404 AprE Subtilisin-like s 99.7 1.6E-16 3.5E-21 171.6 17.3 187 183-420 138-336 (508)
43 cd02129 PA_hSPPL_like PA_hSPPL 99.4 1E-12 2.2E-17 113.3 9.1 81 449-536 29-112 (120)
44 cd02120 PA_subtilisin_like PA_ 99.4 5.5E-12 1.2E-16 111.4 12.5 115 408-537 2-117 (126)
45 cd04817 PA_VapT_like PA_VapT_l 99.3 6.2E-12 1.3E-16 111.6 8.6 71 459-535 50-130 (139)
46 cd02127 PA_hPAP21_like PA_hPAP 99.3 1.4E-11 2.9E-16 107.0 8.8 79 450-536 21-106 (118)
47 cd04816 PA_SaNapH_like PA_SaNa 99.3 5.2E-11 1.1E-15 104.5 11.6 79 451-536 30-112 (122)
48 PF02225 PA: PA domain; Inter 99.2 2.6E-11 5.7E-16 102.5 8.7 74 456-535 24-100 (101)
49 cd02122 PA_GRAIL_like PA _GRAI 99.2 4.1E-11 8.9E-16 106.9 10.0 82 448-536 42-128 (138)
50 cd04813 PA_1 PA_1: Protease-as 99.2 3.9E-11 8.5E-16 103.9 8.8 79 448-535 25-108 (117)
51 cd02123 PA_C_RZF_like PA_C-RZF 99.2 5.1E-11 1.1E-15 108.5 8.8 82 450-538 50-139 (153)
52 cd04056 Peptidases_S53 Peptida 99.2 5.5E-11 1.2E-15 124.0 10.2 106 295-405 82-201 (361)
53 cd02126 PA_EDEM3_like PA_EDEM3 99.2 4.9E-11 1.1E-15 105.1 8.4 78 450-535 27-115 (126)
54 cd02130 PA_ScAPY_like PA_ScAPY 99.2 1.8E-10 3.8E-15 101.2 10.9 77 451-535 32-111 (122)
55 cd02125 PA_VSR PA_VSR: Proteas 99.2 1.3E-10 2.9E-15 102.1 9.1 67 463-535 40-116 (127)
56 cd00538 PA PA: Protease-associ 99.1 1.6E-10 3.4E-15 101.8 8.7 86 448-540 28-120 (126)
57 cd02132 PA_GO-like PA_GO-like: 99.1 1.6E-10 3.6E-15 103.5 8.7 77 450-536 48-129 (139)
58 cd02133 PA_C5a_like PA_C5a_lik 99.1 2.3E-10 4.9E-15 103.4 9.6 75 457-537 39-113 (143)
59 cd02124 PA_PoS1_like PA_PoS1_l 99.1 3.5E-10 7.6E-15 99.8 10.2 80 448-535 39-118 (129)
60 cd04818 PA_subtilisin_1 PA_sub 99.1 4.8E-10 1E-14 97.8 9.0 82 448-537 25-109 (118)
61 cd04819 PA_2 PA_2: Protease-as 99.0 1.7E-09 3.7E-14 95.5 10.6 72 459-536 38-117 (127)
62 PF05922 Inhibitor_I9: Peptida 98.8 2.6E-08 5.6E-13 80.7 8.6 46 115-160 36-81 (82)
63 cd02128 PA_TfR PA_TfR: Proteas 98.5 2.1E-07 4.5E-12 86.3 7.1 70 461-536 51-153 (183)
64 cd04815 PA_M28_2 PA_M28_2: Pro 98.4 4.3E-07 9.3E-12 80.9 6.8 71 459-535 33-123 (134)
65 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 5.9E-06 1.3E-10 74.6 10.8 99 426-535 19-131 (151)
66 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 8.9E-06 1.9E-10 72.6 10.0 94 426-536 19-135 (142)
67 cd02121 PA_GCPII_like PA_GCPII 98.1 7.6E-06 1.7E-10 78.5 8.3 39 461-505 67-105 (220)
68 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 1.5E-05 3.3E-10 70.7 8.4 71 426-507 21-97 (137)
69 cd02131 PA_hNAALADL2_like PA_h 98.1 8.8E-06 1.9E-10 72.5 6.3 70 462-537 37-138 (153)
70 KOG2442 Uncharacterized conser 98.0 8.6E-06 1.9E-10 84.1 6.5 78 448-535 82-164 (541)
71 KOG4628 Predicted E3 ubiquitin 97.7 6.3E-05 1.4E-09 76.2 7.0 83 448-536 60-147 (348)
72 KOG3525 Subtilisin-like propro 97.5 0.00026 5.6E-09 75.1 8.2 181 173-403 23-213 (431)
73 KOG3920 Uncharacterized conser 97.5 7.7E-05 1.7E-09 65.8 2.9 78 447-532 71-157 (193)
74 COG4934 Predicted protease [Po 96.4 0.0065 1.4E-07 70.2 7.4 98 296-397 288-395 (1174)
75 cd04821 PA_M28_1_2 PA_M28_1_2: 95.8 0.012 2.5E-07 53.7 4.4 100 427-537 22-152 (157)
76 KOG2195 Transferrin receptor a 69.1 5 0.00011 45.4 4.0 39 462-506 181-219 (702)
77 cd07478 Peptidases_S8_CspA-lik 55.9 4.3 9.3E-05 43.9 0.4 32 382-413 336-368 (455)
78 PLN03207 stomagen; Provisional 55.0 14 0.0003 30.4 3.0 31 1-31 1-31 (113)
79 PF07172 GRP: Glycine rich pro 33.9 49 0.0011 27.5 3.3 15 10-24 6-20 (95)
80 COG4882 Predicted aminopeptida 28.8 1.5E+02 0.0032 30.8 6.3 68 462-534 86-161 (486)
81 KOG2018 Predicted dinucleotide 26.7 1.4E+02 0.0031 30.4 5.6 54 323-377 180-246 (430)
82 PF08821 CGGC: CGGC domain; I 24.7 4.2E+02 0.0091 22.4 7.5 73 296-373 30-104 (107)
83 PF08029 HisG_C: HisG, C-termi 22.1 1.4E+02 0.0031 23.5 3.9 21 483-503 51-71 (75)
84 TIGR02744 TrbI_Ftype type-F co 20.6 2.7E+02 0.0058 23.9 5.4 29 89-117 55-83 (112)
85 cd00411 Asparaginase Asparagin 20.2 2.6E+02 0.0057 28.6 6.5 43 326-375 226-269 (323)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-37 Score=311.88 Aligned_cols=234 Identities=50% Similarity=0.791 Sum_probs=194.1
Q ss_pred ccccCCCCCccCCCCcchhcc-cCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 009135 158 VRTATTHTPQFLGLPQGAWIQ-EGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236 (542)
Q Consensus 158 ~~~~~~~s~~~~gl~~~~w~~-~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 236 (542)
+++++++++.++++ ...|.. .+..+++|+||+|||||||||++||+|.+... .+.+..|.+.+..+..+....++
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (307)
T cd04852 1 YQLHTTRSPDFLGL-PGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGG---GPYPHTWPGDCVTGEDFNPFSCN 76 (307)
T ss_pred CCccccCCHHHcCC-CCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCC---CCCCCCCCCcccCCCCcCccCcC
Confidence 35677888888984 556765 44558999999999999999999999998765 56677899988888877777899
Q ss_pred ceeeeeeeccccccccCccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCC
Q 009135 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG 316 (542)
Q Consensus 237 ~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~ 316 (542)
+|+++.++|..+.......+...+..++.|..||||||||||+|+...+....|...+.+.||||+|+|+.+|+++..+.
T Consensus 77 ~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~ 156 (307)
T cd04852 77 NKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG 156 (307)
T ss_pred CeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC
Confidence 99999999988654332233444566778999999999999999876554444445566889999999999999998667
Q ss_pred CCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCcEEEEe
Q 009135 317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396 (542)
Q Consensus 317 ~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~~~~~p~vitVg 396 (542)
+..+++++++++|++++++|||||||.... ..+.+.++.++..+.++|++||+||||+|+...+.++..|++|+||
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 889999999999999999999999998653 2234678888889999999999999999988888889999999999
Q ss_pred ccc
Q 009135 397 AAS 399 (542)
Q Consensus 397 A~~ 399 (542)
|++
T Consensus 233 a~~ 235 (307)
T cd04852 233 AST 235 (307)
T ss_pred ecc
Confidence 987
No 2
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-37 Score=305.17 Aligned_cols=247 Identities=23% Similarity=0.344 Sum_probs=200.0
Q ss_pred eEEEEece-eeeeEEEEeCHHHHHHHhcCCCcEEEEecccccccC-----CCCCccCCCCc---------chhcccCCCC
Q 009135 119 LKLYSYHY-LINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTAT-----THTPQFLGLPQ---------GAWIQEGGYE 183 (542)
Q Consensus 119 ~~~~~~~~-~~~g~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~gl~~---------~~w~~~~~~~ 183 (542)
+..+.... +++|+.-.++.+-+..++++|-+..++++..++... .+....|+|++ ..|..+-...
T Consensus 136 ~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~ 215 (501)
T KOG1153|consen 136 KNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEI 215 (501)
T ss_pred ccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeec
Confidence 34444544 888999999999999999999999999887776543 44455577643 2344433344
Q ss_pred CCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCC
Q 009135 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (542)
Q Consensus 184 ~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 263 (542)
..|+||..+|+||||+.+||||.++.. |.. .++. ...
T Consensus 216 ~aG~gvtaYv~DTGVni~H~dFegRa~---------wGa------~i~~----------------------------~~~ 252 (501)
T KOG1153|consen 216 DAGKGVTAYVLDTGVNIEHPDFEGRAI---------WGA------TIPP----------------------------KDG 252 (501)
T ss_pred ccCCCeEEEEeccccccccccccccee---------ccc------ccCC----------------------------CCc
Confidence 599999999999999999999998853 321 1110 022
Q ss_pred CCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhC---------CC
Q 009135 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---------GV 334 (542)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---------g~ 334 (542)
..|++||||||||+|++. ..|||.+++|+++||++++|.+..+++++++|++++. +.
T Consensus 253 ~~D~nGHGTH~AG~I~sK--------------t~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~ 318 (501)
T KOG1153|consen 253 DEDCNGHGTHVAGLIGSK--------------TFGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKK 318 (501)
T ss_pred ccccCCCcceeeeeeecc--------------ccccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCC
Confidence 368999999999999977 5799999999999999999999999999999999986 47
Q ss_pred cEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CCCCCCcEEEEeccccCCcccceeEeCCC
Q 009135 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (542)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~s~~G~~ 413 (542)
.|.|||+|+... ..++.|+++|.+.|+.+++||||+..+.|. .|+.+.++|||||++..+.++.|||+|+|
T Consensus 319 sv~NlSlGg~~S--------~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~D~iA~FSN~G~C 390 (501)
T KOG1153|consen 319 SVANLSLGGFRS--------AALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKNDTIAFFSNWGKC 390 (501)
T ss_pred eEEEEecCCccc--------HHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccccchhhhcCccce
Confidence 899999998654 589999999999999999999999988664 46677999999999999999999999999
Q ss_pred eEEEeeecCCCCCCceeEEee
Q 009135 414 LTISGVGLAPGTDKMYTLISA 434 (542)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~ 434 (542)
+++ |+||.+....+...
T Consensus 391 Vdi----FAPGv~IlSs~iGs 407 (501)
T KOG1153|consen 391 VDI----FAPGVNILSSWIGS 407 (501)
T ss_pred eee----ecCchhhhhhhhcC
Confidence 999 67776555555543
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.7e-34 Score=308.30 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=146.9
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcee--eeeeeccccccccCccCCCCC
Q 009135 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKL--IGARHFAASAITRGIFNSSQD 260 (542)
Q Consensus 183 ~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki--~~~~~~~~~~~~~~~~~~~~~ 260 (542)
+.+|+||+|||||||||++||+|.++...+..+.. |..+.+...|+.+ +.+++|++ +
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~---------GrdgiDdD~nG~vdd~~G~nfVd------------~ 370 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELH---------GRKGIDDDNNGNVDDEYGANFVN------------N 370 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhccccccccc---------CccccccccCCcccccccccccC------------C
Confidence 57899999999999999999999987531111110 1111111111111 22344433 2
Q ss_pred CCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEec
Q 009135 261 YASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS 340 (542)
Q Consensus 261 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S 340 (542)
...|.|.+||||||||||||..+++ .++.||||+|+|+++|+++..+.+..+++++||+||++.|++|||||
T Consensus 371 ~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmS 442 (639)
T PTZ00262 371 DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGS 442 (639)
T ss_pred CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEec
Confidence 3456889999999999999986543 34789999999999999998778899999999999999999999999
Q ss_pred cCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC--------------CCCC----CCCcEEEEeccccCC
Q 009135 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--------------SMSS----FSPWIFTVGAASHDR 402 (542)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~--------------~~~~----~~p~vitVgA~~~~~ 402 (542)
||... +...+..|+++|.++|++||+||||+|.+.. .+|+ ..|+||+|||++.+.
T Consensus 443 lG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~ 515 (639)
T PTZ00262 443 FSFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK 515 (639)
T ss_pred cccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC
Confidence 99642 2357889999999999999999999986421 2343 247899999997643
Q ss_pred --c--ccceeEeC-CCeEEEeee
Q 009135 403 --I--YTNSIILG-NSLTISGVG 420 (542)
Q Consensus 403 --~--~~~~s~~G-~~~~~~~~~ 420 (542)
. ++.++++| ..+++.+||
T Consensus 516 ~~~~s~s~~Snyg~~~VDIaAPG 538 (639)
T PTZ00262 516 NNQYSLSPNSFYSAKYCQLAAPG 538 (639)
T ss_pred CCcccccccccCCCCcceEEeCC
Confidence 2 23456676 567774443
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.5e-32 Score=270.67 Aligned_cols=170 Identities=23% Similarity=0.329 Sum_probs=138.8
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCC
Q 009135 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (542)
Q Consensus 183 ~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 262 (542)
+++|+||+|||||||||.+||+|.+... ..+|.. ..
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~-------------------------------~~~~~~-------------~~ 39 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE-------------------------------RTNWTN-------------EK 39 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc-------------------------------ccccCC-------------CC
Confidence 8999999999999999999999985311 001100 12
Q ss_pred CCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccC
Q 009135 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (542)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (542)
...|..+|||||||||+|+.+ ...||||+|+|+.+|++.+.+.+..++++++++|+++.+++|||||||
T Consensus 40 ~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G 108 (255)
T cd07479 40 TLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG 108 (255)
T ss_pred CCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeecc
Confidence 335778999999999999753 268999999999999999876677888999999999999999999999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCcEEEEeccccCCcccceeEeCCC
Q 009135 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~s~~G~~ 413 (542)
.... ....+.+++.++.++|++||+||||+|+... .+|+..+++|+|||++.++..+.||++|..
T Consensus 109 ~~~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~g~~ 175 (255)
T cd07479 109 GPDF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFDDNIARFSSRGMT 175 (255)
T ss_pred CCCC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccCCccccccCCCCC
Confidence 7431 1245666777889999999999999998543 356777999999999999999999999854
No 5
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=1.1e-31 Score=264.41 Aligned_cols=181 Identities=21% Similarity=0.264 Sum_probs=139.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCC
Q 009135 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (542)
Q Consensus 186 G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
+++|+|||||||||++||+|.++.. ..++|..... +.....+...
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~------------------------------~~~~~~~~~~-----~~~~~~~~~~ 46 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII------------------------------GGKSFSPYEG-----DGNKVSPYYV 46 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc------------------------------cCCCCCCCCC-----CcccCCCCCC
Confidence 7899999999999999999997632 0111111100 0000011224
Q ss_pred CCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCC------CCCHHHHHHHHHHHhhCCCcEEEe
Q 009135 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF------GGFAADVVAAIDQAAQDGVDIISL 339 (542)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~------~~~~~~i~~ai~~a~~~g~~VIN~ 339 (542)
|..+|||||||||+ |+||+|+|+.+|+++..+ .+....+++||+||+++|++||||
T Consensus 47 d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~ 108 (247)
T cd07491 47 SADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISM 108 (247)
T ss_pred CCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEe
Confidence 68899999999995 789999999999998754 345678999999999999999999
Q ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC-CC--CCCCCcEEEEeccccCCcccceeEeCCCeEE
Q 009135 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (542)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~-~~--~~~~p~vitVgA~~~~~~~~~~s~~G~~~~~ 416 (542)
|||...... .......+++++++|.++|++||+||||+|.+.. .+ |+..|+||+|||++.++.++.|+++|..+++
T Consensus 109 S~g~~~~~~-~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g~~~~~S~~g~~vd~ 187 (247)
T cd07491 109 SWTIKKPED-NDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDGGADAPVGDEDRVDY 187 (247)
T ss_pred eeecccccc-cccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCCCCccccCCCCcceE
Confidence 999754311 0123578899999999999999999999998764 33 4556999999999999999999999999998
Q ss_pred Eeee
Q 009135 417 SGVG 420 (542)
Q Consensus 417 ~~~~ 420 (542)
.+||
T Consensus 188 ~APG 191 (247)
T cd07491 188 ILPG 191 (247)
T ss_pred EeCC
Confidence 4433
No 6
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.98 E-value=2.7e-31 Score=264.70 Aligned_cols=182 Identities=21% Similarity=0.244 Sum_probs=147.2
Q ss_pred hhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCc
Q 009135 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (542)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 254 (542)
.|.. +++|+||+|||||+|||.+||+|.+..... ....|
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~~~~---~~~~~---------------------------------- 40 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGANLTP---LFTYA---------------------------------- 40 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCcccc---ccCcc----------------------------------
Confidence 4666 899999999999999999999999754300 00000
Q ss_pred cCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCC-HHHHHHHHHHHhhCC
Q 009135 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGF-AADVVAAIDQAAQDG 333 (542)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~-~~~i~~ai~~a~~~g 333 (542)
.......|..+|||||||+|+|+... .+.||||+|+|+.++++...+.+. ..++++|++||+++|
T Consensus 41 ----~~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g 106 (267)
T cd07476 41 ----AAACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQG 106 (267)
T ss_pred ----ccCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 00123356789999999999987542 368999999999999998765543 778999999999999
Q ss_pred CcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCcEEEEeccccCCcccceeEeCCC
Q 009135 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (542)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~ 413 (542)
++|||||||..... ......+.++++++.++|++||+||||+|.....+|+..|++|+|||++.++....|+++|+.
T Consensus 107 ~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~~~~~~~s~~g~~ 183 (267)
T cd07476 107 AHIINISGGRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNWGAD 183 (267)
T ss_pred CCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCCCCeeeecCCCCC
Confidence 99999999974422 223567899999999999999999999998878888889999999999999888899999875
Q ss_pred e
Q 009135 414 L 414 (542)
Q Consensus 414 ~ 414 (542)
.
T Consensus 184 ~ 184 (267)
T cd07476 184 Y 184 (267)
T ss_pred C
Confidence 3
No 7
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.98 E-value=3.1e-31 Score=268.12 Aligned_cols=211 Identities=21% Similarity=0.301 Sum_probs=150.4
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccc-----cCccC-----
Q 009135 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT-----RGIFN----- 256 (542)
Q Consensus 187 ~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~-----~~~~~----- 256 (542)
++|+|||||||||++||+|+++.+.++.+.+. ++....+.+|.+ -+.+++|...... ....+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~--~~~d~d~ng~~d------d~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPG--NGIDDDNNGYID------DVNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCC--CCccCCCCCccc------cccCeeccCCcccccccccCcccccccc
Confidence 58999999999999999999987655554442 233333333321 1344555431100 00000
Q ss_pred -CCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCc
Q 009135 257 -SSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335 (542)
Q Consensus 257 -~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ 335 (542)
...+...|.+..+|||||||||+|...++ .++.||||+|+|+.+|++.. +....+++++|++||++.|++
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCc
Confidence 11123345578999999999999986543 24789999999999999864 456778899999999999999
Q ss_pred EEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCC--------CCCcEEEEeccccCCc-
Q 009135 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSS--------FSPWIFTVGAASHDRI- 403 (542)
Q Consensus 336 VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~---~~~~--------~~p~vitVgA~~~~~~- 403 (542)
|||||||..... ....+..+++++.++|+++|+||||+|.+.. .+|. ..+++|+|||++....
T Consensus 144 IiN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~~ 218 (291)
T cd07483 144 VINMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYEN 218 (291)
T ss_pred EEEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCCc
Confidence 999999964321 2357888999999999999999999996532 2232 2478999999987653
Q ss_pred --ccceeEeCC-CeEEEee
Q 009135 404 --YTNSIILGN-SLTISGV 419 (542)
Q Consensus 404 --~~~~s~~G~-~~~~~~~ 419 (542)
.+.||++|. .+++.+|
T Consensus 219 ~~~~~~Sn~G~~~vdi~AP 237 (291)
T cd07483 219 NLVANFSNYGKKNVDVFAP 237 (291)
T ss_pred ccccccCCCCCCceEEEeC
Confidence 688999997 5777443
No 8
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.97 E-value=4.7e-31 Score=264.72 Aligned_cols=207 Identities=24% Similarity=0.297 Sum_probs=156.7
Q ss_pred hhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCc
Q 009135 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (542)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 254 (542)
+|.. +++|+||+|+|||||||++||+|.+..... .+.. ....+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~------~~~~----------------~~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGD------GYDP----------------AVNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCC------Cccc----------------ccCCccccc-------
Confidence 5776 899999999999999999999999872200 0000 000000000
Q ss_pred cCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCC
Q 009135 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (542)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (542)
+.........|..+|||||||||++..++.....|.. ...|+||+|+|+.+|++..........++++|+|+++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 0001113345678999999999999765432211111 2456999999999999998767788889999999999999
Q ss_pred cEEEeccCCCCCCCCCCCcchHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCCCCCCCcEEEEeccccCCcccce
Q 009135 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKA-------GIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (542)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-------GilvV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~ 407 (542)
+|||||||.... ..+...+.++++.+.++ |++||+||||+|.....+|+..+++|+||+++.++..+.|
T Consensus 126 ~Vin~S~g~~~~----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~~~~~~~ 201 (273)
T cd07485 126 VILQNSWGGTGG----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTNDNKASF 201 (273)
T ss_pred cEEEecCCCCCc----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCCCCcCcc
Confidence 999999997542 22346788888888888 9999999999999877778888999999999999999999
Q ss_pred eEeCCCeEEEeeec
Q 009135 408 IILGNSLTISGVGL 421 (542)
Q Consensus 408 s~~G~~~~~~~~~~ 421 (542)
+++|...++.+++.
T Consensus 202 S~~g~~~~i~apG~ 215 (273)
T cd07485 202 SNYGRWVDIAAPGV 215 (273)
T ss_pred ccCCCceEEEeCCC
Confidence 99999999865543
No 9
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=2e-30 Score=254.68 Aligned_cols=169 Identities=26% Similarity=0.365 Sum_probs=139.2
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCCC
Q 009135 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (542)
Q Consensus 189 v~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (542)
|+|||||||||.+||+|.++... .+++. ...+.|..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~------------------------------~~~~~--------------~~~~~~~~ 36 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA------------------------------RLFFA--------------GPGAPAPS 36 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc------------------------------cccCC--------------CCCCCCCC
Confidence 78999999999999999865430 00000 01235678
Q ss_pred CChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCC---CCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 009135 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF---GGFAADVVAAIDQAAQDGVDIISLSITPNR 345 (542)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~---~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~ 345 (542)
+|||||||||++.... ..||||+|+|+.+|++...+ .++..++++||+|+++.|++|||||||...
T Consensus 37 ~HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~ 105 (239)
T cd05561 37 AHGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP 105 (239)
T ss_pred CCHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 9999999999998542 26999999999999998642 357788999999999999999999999632
Q ss_pred CCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCcEEEEeccccCCcccceeEeCCCeEEEeee
Q 009135 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (542)
Q Consensus 346 ~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~~~~~~ 420 (542)
...++++++++.++|++||+||||+|++. ..+|+..+++|+|||++.++....++++|+.+++.+||
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di~ApG 173 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGRLYREANRGAHVDFAAPG 173 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCCccccCCCCCcceEEccc
Confidence 25788999999999999999999999763 46788889999999999999999999999999985544
No 10
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=3e-30 Score=260.55 Aligned_cols=143 Identities=24% Similarity=0.251 Sum_probs=122.2
Q ss_pred CCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHh----------hC
Q 009135 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA----------QD 332 (542)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~----------~~ 332 (542)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+. +.+++++|++|++ ..
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~~-~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCGG-TLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCCC-cHHHHHHHHHHHhccCcCCCcccCC
Confidence 34577899999999999986533 34789999999999999987644 8889999999998 45
Q ss_pred CCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCcEEEEeccccCCcccceeEeC
Q 009135 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (542)
Q Consensus 333 g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~s~~G 411 (542)
+++|||||||..... ...+.++++.+.++|++||+||||+|.+. ..+|+..+++|+|||++.++..+.|+++|
T Consensus 137 ~~~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~g 210 (285)
T cd07496 137 PAKVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLRGQRASYSNYG 210 (285)
T ss_pred CCeEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCCCCcccccCCC
Confidence 789999999975431 36788999999999999999999999876 66788889999999999999999999999
Q ss_pred CCeEEEeee
Q 009135 412 NSLTISGVG 420 (542)
Q Consensus 412 ~~~~~~~~~ 420 (542)
..+++.++|
T Consensus 211 ~~vdi~apG 219 (285)
T cd07496 211 PAVDVSAPG 219 (285)
T ss_pred CCCCEEeCC
Confidence 999985444
No 11
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.97 E-value=5.5e-30 Score=255.21 Aligned_cols=188 Identities=30% Similarity=0.422 Sum_probs=155.8
Q ss_pred CcchhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccc
Q 009135 172 PQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT 251 (542)
Q Consensus 172 ~~~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~ 251 (542)
.+.+|.. + +|+||+|+||||||+++||+|..... ...++|.+.
T Consensus 18 ~~~~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~~~-----------------------------~~~~~~~~~--- 60 (260)
T cd07484 18 APKAWDI----T-GGSGVTVAVVDTGVDPTHPDLLKVKF-----------------------------VLGYDFVDN--- 60 (260)
T ss_pred hHHHHhh----c-CCCCCEEEEEeCCCCCCCcccccCCc-----------------------------ccceeccCC---
Confidence 3567887 3 99999999999999999999854321 112222211
Q ss_pred cCccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhh
Q 009135 252 RGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ 331 (542)
Q Consensus 252 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~ 331 (542)
...+.|..+|||||||||++....+ .++.|+||+|+|+.+|+++..+.+...+++++++++++
T Consensus 61 ---------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~ 123 (260)
T cd07484 61 ---------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAAD 123 (260)
T ss_pred ---------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH
Confidence 1235678899999999999875443 34789999999999999998777888999999999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCcEEEEeccccCCcccceeEeC
Q 009135 332 DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (542)
Q Consensus 332 ~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~s~~G 411 (542)
.+++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.++....|+++|
T Consensus 124 ~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g 196 (260)
T cd07484 124 KGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASFSNYG 196 (260)
T ss_pred CCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCCCCcCCcCCCC
Confidence 99999999999753 24678899999999999999999999998889999999999999999999999999999
Q ss_pred CCeEEEeee
Q 009135 412 NSLTISGVG 420 (542)
Q Consensus 412 ~~~~~~~~~ 420 (542)
+..++.+++
T Consensus 197 ~~~~~~apG 205 (260)
T cd07484 197 KWVDVSAPG 205 (260)
T ss_pred CCceEEeCC
Confidence 998885433
No 12
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=2.2e-30 Score=262.89 Aligned_cols=202 Identities=27% Similarity=0.245 Sum_probs=127.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCC
Q 009135 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (542)
Q Consensus 186 G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
|+||+|||||||||.+||+|.++... .|...+. + ..++..+.++..+ ....+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~-------~~~~~~d----~-----~~~~~~g~d~~~~-----------~~~~~~ 53 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF-------SWKLKFD----Y-----KAYLLPGMDKWGG-----------FYVIMY 53 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC-------CcccccC----c-----CCCccCCcCCCCC-----------ccCCCC
Confidence 89999999999999999999865320 1100000 0 0111111221111 113467
Q ss_pred CCCCChhhhhhhhhccCCCCcccccc-cCCCcccccCCCeEEEEEeccCCCCCCHHHHHH-------HHHHH--hhCCCc
Q 009135 266 DGDGHGSHTASVAAGNHGIPVVVTGH-HFGNASGMAPRSHIAVYKALYKSFGGFAADVVA-------AIDQA--AQDGVD 335 (542)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~-------ai~~a--~~~g~~ 335 (542)
|.+||||||||||+|.........++ ...++.||||+|+|+++|++...+......+.. +++|. .+++++
T Consensus 54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCce
Confidence 89999999999999985422110000 113478999999999999997543333222222 34443 368999
Q ss_pred EEEeccCCCCCCCCC-CCcchHHHHHHHHH-HhCCcEEEEecCCCCCCCC--CCCCCCCcEEEEeccccC----------
Q 009135 336 IISLSITPNRRPPGI-ATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHD---------- 401 (542)
Q Consensus 336 VIN~S~G~~~~~~~~-~~~~~~~~~a~~~a-~~~GilvV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~---------- 401 (542)
|||||||........ ....+..+.+++.+ .++|+++|+||||+|+... +.|+.++++|+|||++..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~~~~ 213 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYLFGY 213 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhhhcc
Confidence 999999975432111 01112233333332 4899999999999998643 456678999999999753
Q ss_pred -----CcccceeEeCCCe
Q 009135 402 -----RIYTNSIILGNSL 414 (542)
Q Consensus 402 -----~~~~~~s~~G~~~ 414 (542)
+..+.||++|+..
T Consensus 214 ~~~~~~~~~~fSs~Gp~~ 231 (311)
T cd07497 214 LPGGSGDVVSWSSRGPSI 231 (311)
T ss_pred ccCCCCCccccccCCCCc
Confidence 4567889998764
No 13
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.97 E-value=6.3e-30 Score=254.08 Aligned_cols=172 Identities=27% Similarity=0.400 Sum_probs=145.0
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCC
Q 009135 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (542)
Q Consensus 183 ~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 262 (542)
+++|+||+|+||||||+.+||+|.++.. ..++|... .
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~~~------------------------------~~~~~~~~-------------~ 57 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGRAI------------------------------WGADFVGG-------------D 57 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCCee------------------------------eeeecCCC-------------C
Confidence 6999999999999999999999986532 11122111 1
Q ss_pred CCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhC-----CCcEE
Q 009135 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-----GVDII 337 (542)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~~VI 337 (542)
...|..+|||||||||++. ..||||+|+|+.+|+++..+.+..+.++.+++|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~--------------~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGK--------------TYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHcc--------------ccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 1457889999999999986 3699999999999999987778889999999999987 48999
Q ss_pred EeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCcEEEEeccccCCcccceeEeCCCeEE
Q 009135 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (542)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~~ 416 (542)
|||||... ...+..+++++.++|+++|+||||+|.+. ...|+..+++|+|||++.++....|+++|+++++
T Consensus 124 n~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~~~~~~~S~~g~~~~i 195 (255)
T cd04077 124 NMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSDDARASFSNYGSCVDI 195 (255)
T ss_pred EeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCCCCccCcccCCCCCcE
Confidence 99999753 36788899999999999999999999875 4567778999999999999999999999999988
Q ss_pred Eee
Q 009135 417 SGV 419 (542)
Q Consensus 417 ~~~ 419 (542)
.+|
T Consensus 196 ~ap 198 (255)
T cd04077 196 FAP 198 (255)
T ss_pred EeC
Confidence 443
No 14
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=2.7e-29 Score=247.58 Aligned_cols=181 Identities=28% Similarity=0.349 Sum_probs=146.7
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCCC
Q 009135 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (542)
Q Consensus 189 v~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (542)
|+||||||||+++||+|.+... ....| ++. .+...+.|..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~-----~~~~~-----------------------~~~------------~~~~~~~~~~ 40 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK-----LVPGW-----------------------NFV------------SNNDPTSDID 40 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC-----ccCCc-----------------------ccc------------CCCCCCCCCC
Confidence 6899999999999999997411 00011 110 0112346788
Q ss_pred CChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCC
Q 009135 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPP 348 (542)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 348 (542)
+|||||||||+|+.++. .++.||||+|+|+.+|++...+....+++.++++|+++.+++|||||||.....
T Consensus 41 ~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 111 (242)
T cd07498 41 GHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST- 111 (242)
T ss_pred CCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC-
Confidence 99999999999986432 347899999999999999887667888999999999999999999999975442
Q ss_pred CCCCcchHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCcEEEEeccccCCcccceeEeCCCeEEEeee
Q 009135 349 GIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (542)
Q Consensus 349 ~~~~~~~~~~~a~~~a~~-~GilvV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~~~~~~ 420 (542)
..+...++.+++++.+ +|+++|+||||+|.....+|+..+++|+|||++..+..+.|+++|+.+++.+++
T Consensus 112 --~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~apG 182 (242)
T cd07498 112 --ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSNDARASYSNYGNYVDLVAPG 182 (242)
T ss_pred --chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCCCCccCcCCCCCCeEEEeCc
Confidence 2345678888899998 999999999999988777888899999999999999999999999999984443
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.97 E-value=2.4e-29 Score=251.15 Aligned_cols=182 Identities=29% Similarity=0.388 Sum_probs=140.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCC
Q 009135 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (542)
Q Consensus 186 G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
|+||+|||||||||++||+|.++.. .|... .+...+++ ++.......|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~--------~~~~~--------------~~~~~~~~---------~d~~~~~~~~~ 49 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYR--------GWGGG--------------SADHDYNW---------FDPVGNTPLPY 49 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccc--------ccCCC--------------Cccccccc---------ccCCCCCCCCC
Confidence 8999999999999999999987521 00000 00000011 11111234566
Q ss_pred CCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhh------------CC
Q 009135 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ------------DG 333 (542)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~------------~g 333 (542)
|..+|||||||||+|....+ ...||||+|+|+.+|++.... +...+++++++|+++ .+
T Consensus 50 d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 50 DDNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC-CcHHHHHHHHHHHHhcccccccccccccC
Confidence 78899999999999875432 248999999999999998764 778899999999875 78
Q ss_pred CcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCcEEEEeccccCCcccceeEe
Q 009135 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIIL 410 (542)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~s~~ 410 (542)
++|||||||.... ....+..+++.+.++|++||+||||+|.+.. .+|+..+++|+|||++.++..+.|+++
T Consensus 120 ~~Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~S~~ 193 (264)
T cd07481 120 PDVINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSSR 193 (264)
T ss_pred CeEEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCCCCCccccCC
Confidence 9999999997543 2356778888899999999999999997643 356778999999999999999999999
Q ss_pred CCCe
Q 009135 411 GNSL 414 (542)
Q Consensus 411 G~~~ 414 (542)
|+..
T Consensus 194 g~~~ 197 (264)
T cd07481 194 GPST 197 (264)
T ss_pred CCCC
Confidence 8876
No 16
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.97 E-value=2.8e-29 Score=260.50 Aligned_cols=215 Identities=27% Similarity=0.343 Sum_probs=157.5
Q ss_pred hhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC----ccccccCCCCCCCCCceeeeeeecccccc
Q 009135 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS----GICEVTRDFPSGSCNRKLIGARHFAASAI 250 (542)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~n~ki~~~~~~~~~~~ 250 (542)
+|... .++|+||+|+|||||||++||+|.+.... ...|. ............+.+.+++.+++|++...
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDS-----KAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND 73 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCc-----ccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCC
Confidence 57662 24899999999999999999999987541 11111 00011112223456778888888876421
Q ss_pred ccCccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccC--CCCCCHHHHHHHHHH
Q 009135 251 TRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK--SFGGFAADVVAAIDQ 328 (542)
Q Consensus 251 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~~~~~~~~i~~ai~~ 328 (542)
+.....+..+|||||||||+|..++.. ....+.||||+|+|+.+|++.. ........+++++++
T Consensus 74 ---------~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~ 139 (346)
T cd07475 74 ---------DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIED 139 (346)
T ss_pred ---------ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 111145788999999999999875311 1135799999999999999984 445778889999999
Q ss_pred HhhCCCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCC----------------CCCCCCcE
Q 009135 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS----------------MSSFSPWI 392 (542)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~----------------~~~~~p~v 392 (542)
+++.|++|||||||...... .....+..+++++.++|++||+||||+|..... .|...+++
T Consensus 140 a~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 140 AVKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 99999999999999865432 344678889999999999999999999864321 23446899
Q ss_pred EEEeccc------cCCcccceeEeCCCe
Q 009135 393 FTVGAAS------HDRIYTNSIILGNSL 414 (542)
Q Consensus 393 itVgA~~------~~~~~~~~s~~G~~~ 414 (542)
|+||+++ .......|+++|+..
T Consensus 217 i~Vga~~~~~~~~~~~~~~~~S~~G~~~ 244 (346)
T cd07475 217 LTVASANKKVPNPNGGQMSGFSSWGPTP 244 (346)
T ss_pred eEEeecccccCCCCCCccCCCcCCCCCc
Confidence 9999997 555677788888754
No 17
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=4.8e-29 Score=254.99 Aligned_cols=192 Identities=26% Similarity=0.340 Sum_probs=145.3
Q ss_pred chhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccC
Q 009135 174 GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG 253 (542)
Q Consensus 174 ~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~ 253 (542)
..|.. +++|+||+|||||||||++||+|.++..+. .++.+.++|..+...
T Consensus 4 ~~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~------------------------~~~~~~~d~~~~~~~-- 53 (312)
T cd07489 4 KLHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG------------------------CKVAGGYDFVGDDYD-- 53 (312)
T ss_pred hHHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC------------------------ceeccccccCCcccc--
Confidence 46666 899999999999999999999999764310 122222333221100
Q ss_pred ccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCC
Q 009135 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDG 333 (542)
Q Consensus 254 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g 333 (542)
..+...+...+.|..+|||||||||++...+ ..+.||||+|+|+.+|++...+......++++++++++++
T Consensus 54 ~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~ 124 (312)
T cd07489 54 GTNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDG 124 (312)
T ss_pred cccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 0111222345667899999999999998653 2478999999999999998776777888999999999999
Q ss_pred CcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCcEEEEeccccCCcccceeEe
Q 009135 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIIL 410 (542)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~s~~ 410 (542)
++|||||||...... ...+..+++++.++|+++|+||||+|.... ..|+..+++|+||+++ +.|+++
T Consensus 125 ~~iIn~S~g~~~~~~-----~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-----~~~s~~ 194 (312)
T cd07489 125 ADVITASLGGPSGWS-----EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-----SYFSSW 194 (312)
T ss_pred CCEEEeCCCcCCCCC-----CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----CCccCC
Confidence 999999999754322 256777888899999999999999987643 3466679999999987 556677
Q ss_pred CCCe
Q 009135 411 GNSL 414 (542)
Q Consensus 411 G~~~ 414 (542)
|+..
T Consensus 195 g~~~ 198 (312)
T cd07489 195 GPTN 198 (312)
T ss_pred CCCC
Confidence 7665
No 18
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=4.2e-29 Score=248.99 Aligned_cols=182 Identities=26% Similarity=0.291 Sum_probs=142.3
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCC-CCC
Q 009135 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS-PFD 266 (542)
Q Consensus 188 Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~-~~d 266 (542)
||+||||||||+++||+|..... ..+.++.+.++|.+.. .. ..|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------------~~~~~i~~~~~~~~~~------------~~~~~~ 45 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------------FKNLRILGEYDFVDNS------------NNTNYT 45 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------------ccCCceeeeecCccCC------------CCCCCC
Confidence 79999999999999999963211 1134566777775531 12 257
Q ss_pred CCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCC--CCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 009135 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (542)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~VIN~S~G~~ 344 (542)
..+|||||||+|+|... +.+.||||+|+|+.+|+...... .....++.+++|+.+.+++|||||||..
T Consensus 46 ~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~ 115 (261)
T cd07493 46 DDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYT 115 (261)
T ss_pred CCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 88999999999999854 23789999999999998764322 3456789999999999999999999975
Q ss_pred CCCCC--------CCCcchHHHHHHHHHHhCCcEEEEecCCCCCC---CCCCCCCCCcEEEEeccccCCcccceeEeCCC
Q 009135 345 RRPPG--------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (542)
Q Consensus 345 ~~~~~--------~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~---~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~ 413 (542)
..... .......+.++++++.++|+++|+||||+|.. ...+|+..+++|+|||++.++..+.|+++|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~G~~ 195 (261)
T cd07493 116 TFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANGNKASFSSIGPT 195 (261)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccCCCCCccCCcCCC
Confidence 43211 01123468889999999999999999999987 35677788999999999999999999999876
Q ss_pred e
Q 009135 414 L 414 (542)
Q Consensus 414 ~ 414 (542)
.
T Consensus 196 ~ 196 (261)
T cd07493 196 A 196 (261)
T ss_pred C
Confidence 4
No 19
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.96 E-value=1.5e-28 Score=240.01 Aligned_cols=175 Identities=30% Similarity=0.468 Sum_probs=144.4
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCC
Q 009135 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (542)
Q Consensus 188 Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (542)
||+|+|||+||+.+||+|.+... ..++|... .. ..+.|.
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~------------------------------~~~~~~~~----------~~-~~~~~~ 39 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV------------------------------GGANFTGD----------DN-NDYQDG 39 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc------------------------------CcccccCC----------CC-CCCCCC
Confidence 79999999999999999987532 11111110 00 234567
Q ss_pred CCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC
Q 009135 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (542)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (542)
.+|||||||+|++..... ...|+||+|+|+.+|++...+.+...+++++++|+++.|++|||||||....
T Consensus 40 ~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~- 109 (229)
T cd07477 40 NGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD- 109 (229)
T ss_pred CCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC-
Confidence 899999999999986532 4789999999999999998777788999999999999999999999997432
Q ss_pred CCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCcEEEEeccccCCcccceeEeCCCeEEEee
Q 009135 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419 (542)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~s~~G~~~~~~~~ 419 (542)
...+..+++.+.++|+++|+||||++...... |+..+++|+||+++.++....|+++|...++.++
T Consensus 110 ------~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~ap 177 (229)
T cd07477 110 ------SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRASFSSTGPEVELAAP 177 (229)
T ss_pred ------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCCCCcCCccCCCCCceEEeC
Confidence 35678888999999999999999999876664 8888999999999999999999999999888443
No 20
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=1.4e-28 Score=245.39 Aligned_cols=180 Identities=31% Similarity=0.508 Sum_probs=144.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCC
Q 009135 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (542)
Q Consensus 186 G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
|+||+|+||||||+++||+|.+.... .+. +.. .........
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-------~~~-----------------------~~~---------~~~~~~~~~ 41 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-------FAD-----------------------FVN---------TVNGRTTPY 41 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-------ccc-----------------------ccc---------cccCCCCCC
Confidence 89999999999999999999976430 000 000 001123445
Q ss_pred CCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhC----CCcEEEecc
Q 009135 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSI 341 (542)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~VIN~S~ 341 (542)
|..+|||||||+|+|...+. .....||||+|+|+.+|+++..+.+..++++++++|+++. +++||||||
T Consensus 42 d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 42 DDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 77899999999999986532 1347899999999999999987778889999999999998 999999999
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCcEEEEeccccCCc----ccceeEeCCCe
Q 009135 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRI----YTNSIILGNSL 414 (542)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~----~~~~s~~G~~~ 414 (542)
|..... ....+.+.++++++.++|++||+||||+|.... ..|+..+++|+|||++.++. .+.|+++|+..
T Consensus 115 g~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~~~~~s~~G~~~ 190 (264)
T cd07487 115 GAPPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPHDDGISYFSSRGPTG 190 (264)
T ss_pred CCCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCCCccccccccCCCCC
Confidence 986542 234578889999999999999999999998765 56777899999999998887 68888888653
No 21
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.96 E-value=3.2e-28 Score=246.73 Aligned_cols=188 Identities=28% Similarity=0.355 Sum_probs=138.1
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCCC
Q 009135 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (542)
Q Consensus 189 v~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (542)
|+|||||||||++||+|.+........ + ..... |.. .......+...+.|..
T Consensus 2 V~VaviDtGi~~~hp~l~~~~~~~~~~----~----~~~~~---------------~~~-----~~~~~~~~~~~~~d~~ 53 (294)
T cd07482 2 VTVAVIDSGIDPDHPDLKNSISSYSKN----L----VPKGG---------------YDG-----KEAGETGDINDIVDKL 53 (294)
T ss_pred cEEEEEeCCCCCCChhHhhcccccccc----c----ccCCC---------------cCC-----ccccccCCCCcCCCCC
Confidence 899999999999999999754311000 0 00000 000 0000111123456789
Q ss_pred CChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCC
Q 009135 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPP 348 (542)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 348 (542)
+|||||||+|+|..+ ..||||+|+|+.+|+++..+.....+++++|+|+++.+++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999998743 35999999999999998876668889999999999999999999999754322
Q ss_pred CC----CCcchHHHHHHHHHHhCCcEEEEecCCCCCCC----------------------CCCCCCCCcEEEEeccccCC
Q 009135 349 GI----ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP----------------------KSMSSFSPWIFTVGAASHDR 402 (542)
Q Consensus 349 ~~----~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~----------------------~~~~~~~p~vitVgA~~~~~ 402 (542)
.. ....+.+.++++.+.++|++||+||||+|... ..+|+..+++|+|||++.++
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~ 201 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNG 201 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCCC
Confidence 11 12235678888899999999999999999754 23455678999999999999
Q ss_pred cccceeEeCC-CeEE
Q 009135 403 IYTNSIILGN-SLTI 416 (542)
Q Consensus 403 ~~~~~s~~G~-~~~~ 416 (542)
..+.|+++|. ..++
T Consensus 202 ~~~~~S~~g~~~~~~ 216 (294)
T cd07482 202 NLSSFSNYGNSRIDL 216 (294)
T ss_pred CcCccccCCCCcceE
Confidence 9999998874 3555
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=5.6e-28 Score=239.82 Aligned_cols=172 Identities=25% Similarity=0.416 Sum_probs=136.5
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCC
Q 009135 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (542)
Q Consensus 188 Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (542)
||+|||||||||++||+|.+... .| .+|..+ .........|.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~--------~~----------------------~~~~~~--------~~~~~~~~~d~ 42 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA--------QW----------------------ADFDEN--------RRISATEVFDA 42 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC--------Cc----------------------eeccCC--------CCCCCCCCCCC
Confidence 79999999999999999987542 01 011000 00112344577
Q ss_pred CCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC
Q 009135 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (542)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (542)
.+|||||||||+|..++ +...||||+++|+.+|++...+ +..++++++++|+++.+++|||||||.....
T Consensus 43 ~~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 43 GGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred CCcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 89999999999998653 2367999999999999998764 7888999999999999999999999975432
Q ss_pred CCCCCcchHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCcEEEEeccccCCcccceeEeCCC
Q 009135 348 PGIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (542)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~-~GilvV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~ 413 (542)
...+..+++...+ +|++||+||||+|.....+|+..+++|+|||++.++....|+++|..
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~ 173 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFGSS 173 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCccc
Confidence 3456666666665 69999999999998878888889999999999999988888888754
No 23
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=1.2e-27 Score=238.18 Aligned_cols=197 Identities=25% Similarity=0.320 Sum_probs=146.0
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCC
Q 009135 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFD 266 (542)
Q Consensus 187 ~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d 266 (542)
+||+|+|||||||++||+|.++......+. .+.+....+.. |.+... .++......++.|
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~~d 61 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEI--PGNGIDDDGNG---------------YVDDIY---GWNFVNNDNDPMD 61 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccc--cccCcccCCCC---------------cccCCC---cccccCCCCCCCC
Confidence 689999999999999999998743111000 01111111111 111100 0111112345678
Q ss_pred CCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 009135 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRR 346 (542)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 346 (542)
..+|||||||||+|..+++ ..+.||||+|+|+.+|++...+.++..+++++++++++.+++|||+|||....
T Consensus 62 ~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~ 133 (259)
T cd07473 62 DNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP 133 (259)
T ss_pred CCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 8999999999999986543 23689999999999999998777889999999999999999999999997533
Q ss_pred CCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCC---CCCCCCC--CCcEEEEeccccCCcccceeEeCCC-eEEEe
Q 009135 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSF--SPWIFTVGAASHDRIYTNSIILGNS-LTISG 418 (542)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~---~~~~~~~--~p~vitVgA~~~~~~~~~~s~~G~~-~~~~~ 418 (542)
...+..+++++.++|+++|+||||+|.. ...+|.. .+++|+||+++.++....|+++|.. .++.+
T Consensus 134 -------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~a 204 (259)
T cd07473 134 -------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDALASFSNYGKKTVDLAA 204 (259)
T ss_pred -------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCCcCcccCCCCCCcEEEe
Confidence 4678888999999999999999999976 3345543 4899999999999999999999864 56643
No 24
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=4.4e-28 Score=242.63 Aligned_cols=185 Identities=20% Similarity=0.228 Sum_probs=133.3
Q ss_pred CcchhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccc
Q 009135 172 PQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT 251 (542)
Q Consensus 172 ~~~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~ 251 (542)
...+|+.. +..|+||+|+|||||||.+||+|.++.... +
T Consensus 4 ~~~aw~~~---~g~G~gV~VaviDtGid~~Hpdl~~~~~~~-------~------------------------------- 42 (277)
T cd04843 4 ARYAWTKP---GGSGQGVTFVDIEQGWNLNHEDLVGNGITL-------I------------------------------- 42 (277)
T ss_pred hHHHHHhc---CCCCCcEEEEEecCCCCCCChhhccccccc-------c-------------------------------
Confidence 35678774 245899999999999999999999764300 0
Q ss_pred cCccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhh
Q 009135 252 RGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ 331 (542)
Q Consensus 252 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~ 331 (542)
+ ...+.|.++|||||||||+|..+. .++.||||+|+|+.+|++. .++++++|.||++
T Consensus 43 ----~----~~~~~d~~gHGT~VAGiIaa~~n~---------~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~ 99 (277)
T cd04843 43 ----S----GLTDQADSDHGTAVLGIIVAKDNG---------IGVTGIAHGAQAAVVSSTR------VSNTADAILDAAD 99 (277)
T ss_pred ----C----CCCCCCCCCCcchhheeeeeecCC---------CceeeeccCCEEEEEEecC------CCCHHHHHHHHHh
Confidence 0 011357789999999999997432 2378999999999999986 1234555555555
Q ss_pred ----CCCcEEEeccCCCCCCCCC--CCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCC------------CC-CCCcE
Q 009135 332 ----DGVDIISLSITPNRRPPGI--ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM------------SS-FSPWI 392 (542)
Q Consensus 332 ----~g~~VIN~S~G~~~~~~~~--~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~------------~~-~~p~v 392 (542)
.++.+||||||........ ..+...+.++++++.++|+++|+||||++.+.... +. ..|++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 4567899999975432110 12345677899999999999999999998753211 11 13689
Q ss_pred EEEeccccCC-c-ccceeEeCCCeEEEeee
Q 009135 393 FTVGAASHDR-I-YTNSIILGNSLTISGVG 420 (542)
Q Consensus 393 itVgA~~~~~-~-~~~~s~~G~~~~~~~~~ 420 (542)
|+|||++.+. . .+.||++|+.+++.+||
T Consensus 180 I~VgA~~~~~~~~~~~fSn~G~~vdi~APG 209 (277)
T cd04843 180 IMVGAGSSTTGHTRLAFSNYGSRVDVYGWG 209 (277)
T ss_pred EEEEeccCCCCCccccccCCCCccceEcCC
Confidence 9999998753 3 78999999999995443
No 25
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.95 E-value=9.5e-28 Score=239.96 Aligned_cols=163 Identities=26% Similarity=0.256 Sum_probs=122.1
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCC
Q 009135 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (542)
Q Consensus 183 ~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 262 (542)
+++|+||+|+|||||||.+||++.+... . ++.+...+.. ...
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~---~-----------------------~l~~~~~~~~------------~~~ 42 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS---G-----------------------DLPGNVNVLG------------DLD 42 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC---C-----------------------CCCcceeecc------------ccC
Confidence 5799999999999999999885432211 0 0000000000 012
Q ss_pred CCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccC
Q 009135 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (542)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (542)
...|..+|||||||||+ ||||+|+|+.+++.. ..+++++||+|++++|++|||||||
T Consensus 43 ~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 43 GGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 34578899999999984 899999999988643 3788999999999999999999999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhC-CcEEEEecCCCCCCC-CCCCCCCCcEEEEeccccCCcccceeE
Q 009135 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSII 409 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~s~ 409 (542)
....+. .....+.++++++.++ |++||+||||+|... ..+|+..|++|+|||++.++....+++
T Consensus 100 ~~~~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~ 165 (275)
T cd05562 100 YLNEPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSD 165 (275)
T ss_pred ccCCCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccc
Confidence 754321 1234678888888887 999999999999864 345777899999999998876665443
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=1.7e-27 Score=241.72 Aligned_cols=187 Identities=28% Similarity=0.408 Sum_probs=129.7
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCC
Q 009135 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261 (542)
Q Consensus 182 ~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~ 261 (542)
.+++|+||+|||||||||.+||+|.+... ...+|.+ .
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------------------------~~~~~~~-------------~ 39 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI------------------------------TTKSFVG-------------G 39 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc------------------------------cCcccCC-------------C
Confidence 37999999999999999999999987632 0011111 0
Q ss_pred CCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEecc
Q 009135 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341 (542)
Q Consensus 262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 341 (542)
..+.|.++|||||||||+|+... +...||||+|+|+.+|++.....+....++++++|+++.|++||||||
T Consensus 40 ~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~ 110 (297)
T cd07480 40 EDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSL 110 (297)
T ss_pred CCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEecc
Confidence 12457889999999999998654 235799999999999999877777888899999999999999999999
Q ss_pred CCCCCC------CCCCCcchHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCC-----CCCC---CcE
Q 009135 342 TPNRRP------PGIATFFNPIDMALLSA---------------AKAGIFVVQAAGNTGPSPKSM-----SSFS---PWI 392 (542)
Q Consensus 342 G~~~~~------~~~~~~~~~~~~a~~~a---------------~~~GilvV~AAGN~G~~~~~~-----~~~~---p~v 392 (542)
|..... .........++...+.+ .++|++||+||||+|...... +... ..|
T Consensus 111 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V 190 (297)
T cd07480 111 GADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGV 190 (297)
T ss_pred CCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEE
Confidence 975411 11122233444444444 789999999999998653322 1222 345
Q ss_pred EEEeccccCCcccceeEe-CCCeEEEeee
Q 009135 393 FTVGAASHDRIYTNSIIL-GNSLTISGVG 420 (542)
Q Consensus 393 itVgA~~~~~~~~~~s~~-G~~~~~~~~~ 420 (542)
++|++.+....+..+.++ +..+++.++|
T Consensus 191 ~~V~~~~~~~~~~~~~~~~~~~~dv~ApG 219 (297)
T cd07480 191 AAVGALGRTGNFSAVANFSNGEVDIAAPG 219 (297)
T ss_pred EEECCCCCCCCccccCCCCCCceEEEeCC
Confidence 555555544444433333 3356674443
No 27
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.95 E-value=1.4e-27 Score=241.88 Aligned_cols=189 Identities=23% Similarity=0.273 Sum_probs=139.0
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCC
Q 009135 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261 (542)
Q Consensus 182 ~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~ 261 (542)
.+++|+||+|||||||||++||+|.+... .+. .+.++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~---------------~~~----~~~~~~~~~~~~~~~-------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF---------------NKT----NLFHRKIVRYDSLSD-------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc---------------CcC----ccCcccEEEeeccCC--------------
Confidence 37999999999999999999999987532 000 012233333322211
Q ss_pred CCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCC-CCHHHHHHHHHHHhhCCCcEEEec
Q 009135 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDGVDIISLS 340 (542)
Q Consensus 262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~-~~~~~i~~ai~~a~~~g~~VIN~S 340 (542)
.+.|..+|||||||||+|..+.... ...+.||||+|+|+.+|++...+. ....++..+++++.+.+++|||||
T Consensus 49 -~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 49 -TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred -CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEecc
Confidence 1227899999999999998765311 114789999999999999987542 455668899999999999999999
Q ss_pred cCCCCCCCCCCCcchHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CCCCCCCcEEEEeccccCCc------------
Q 009135 341 ITPNRRPPGIATFFNPIDMALLSAA-K-AGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRI------------ 403 (542)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~-~-~GilvV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~------------ 403 (542)
||..... .......++.++. + +|++||+||||+|.... ..|+..+++|+|||++....
T Consensus 123 ~G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~~~~~~~~ 197 (293)
T cd04842 123 WGSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDN 197 (293)
T ss_pred CCCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccccccccccCC
Confidence 9976432 1133444444433 3 79999999999998765 66777899999999998876
Q ss_pred ---ccceeEeCCCe
Q 009135 404 ---YTNSIILGNSL 414 (542)
Q Consensus 404 ---~~~~s~~G~~~ 414 (542)
...|+++|+..
T Consensus 198 ~~~~~~~S~~G~~~ 211 (293)
T cd04842 198 SDTVASFSSRGPTY 211 (293)
T ss_pred CCccccccCcCCCC
Confidence 77888888654
No 28
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.95 E-value=1.9e-26 Score=238.98 Aligned_cols=137 Identities=24% Similarity=0.303 Sum_probs=102.2
Q ss_pred CCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCC--CHHHHHHHHHHHhhCCCcEEEeccC
Q 009135 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQDGVDIISLSIT 342 (542)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~--~~~~i~~ai~~a~~~g~~VIN~S~G 342 (542)
.|+.+|||||||||+|+..++ ..+.||||+|+|+++|+++...+. ...++++|++++++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 367899999999999985432 347899999999999998754222 2356899999999999999999999
Q ss_pred CCCCCCCCCCcchHHHHHH-HHHHhCCcEEEEecCCCCCCCCCC--CC-CCCcEEEEeccccC--------------Ccc
Q 009135 343 PNRRPPGIATFFNPIDMAL-LSAAKAGIFVVQAAGNTGPSPKSM--SS-FSPWIFTVGAASHD--------------RIY 404 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~-~~a~~~GilvV~AAGN~G~~~~~~--~~-~~p~vitVgA~~~~--------------~~~ 404 (542)
........ ..+.+++ +.+.++|+++|+||||+|+..+++ |+ ..++||+|||+... +..
T Consensus 254 ~~~~~~~~----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~~~~~~~~~ 329 (412)
T cd04857 254 EATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSLREKLPGNQ 329 (412)
T ss_pred cCCCCccc----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccccccccccCCcc
Confidence 76442211 1233334 344568999999999999876664 33 36899999998532 235
Q ss_pred cceeEeCCC
Q 009135 405 TNSIILGNS 413 (542)
Q Consensus 405 ~~~s~~G~~ 413 (542)
..||++|+.
T Consensus 330 ~~fSSrGP~ 338 (412)
T cd04857 330 YTWSSRGPT 338 (412)
T ss_pred ccccccCCc
Confidence 667888876
No 29
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=4.7e-27 Score=237.78 Aligned_cols=159 Identities=25% Similarity=0.307 Sum_probs=121.3
Q ss_pred CcchhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccc
Q 009135 172 PQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT 251 (542)
Q Consensus 172 ~~~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~ 251 (542)
....|.. +++|+||+|+||||||+..|| |..... .. ++. +..
T Consensus 10 ~~~~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~~----------~~---------------~~~----~~~---- 51 (298)
T cd07494 10 ATRVHQR----GITGRGVRVAMVDTGFYAHPF-FESRGY----------QV---------------RVV----LAP---- 51 (298)
T ss_pred hhHHHhc----CCCCCCcEEEEEeCCCcCCch-hhcCCc----------cc---------------eee----cCC----
Confidence 3567776 899999999999999999998 664321 10 000 000
Q ss_pred cCccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhh
Q 009135 252 RGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ 331 (542)
Q Consensus 252 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~ 331 (542)
.......|.+|||||||+++ .||||+|+|+.+|+++. ..++++++++|+++
T Consensus 52 -------~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~ 102 (298)
T cd07494 52 -------GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAIS 102 (298)
T ss_pred -------CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHh
Confidence 00123467889999999864 49999999999999875 34678999999999
Q ss_pred CCCcEEEeccCCCCCCCC------CCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCcEEEEecccc
Q 009135 332 DGVDIISLSITPNRRPPG------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400 (542)
Q Consensus 332 ~g~~VIN~S~G~~~~~~~------~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~~~~~p~vitVgA~~~ 400 (542)
++++|||||||....... .......+++++++|.++|++||+||||++. .+|+..|+||+|||++.
T Consensus 103 ~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 103 LSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred cCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 999999999997543211 0112456889999999999999999999974 57888999999999843
No 30
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=1.5e-26 Score=234.62 Aligned_cols=177 Identities=38% Similarity=0.553 Sum_probs=133.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCc---cCCCCCCC
Q 009135 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI---FNSSQDYA 262 (542)
Q Consensus 186 G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~---~~~~~~~~ 262 (542)
|+||+|||||||||++||+|.+... .+.++...++|......... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDA 56 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------------CCCceeeeeECccCCCCcccccccccccccC
Confidence 8999999999999999999986421 12334444444432111000 00000112
Q ss_pred CCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccC
Q 009135 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (542)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (542)
...|..+|||||||+|+|..++. ..+.|+||+|+|+.+|++.....+...+++++++|+++.+++|||||||
T Consensus 57 ~~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g 128 (295)
T cd07474 57 SAGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG 128 (295)
T ss_pred CCCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 24568899999999999986542 3478999999999999998666788899999999999999999999999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCcEEEEeccc
Q 009135 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAAS 399 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~--~~~~p~vitVgA~~ 399 (542)
..... ..+.+..+++++.++|+++|+||||+|...... |+..+++|+|||++
T Consensus 129 ~~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~ 182 (295)
T cd07474 129 SSVNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGAST 182 (295)
T ss_pred CCCCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeee
Confidence 75432 235778889999999999999999999765544 56679999999986
No 31
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.94 E-value=1.1e-26 Score=236.06 Aligned_cols=195 Identities=22% Similarity=0.262 Sum_probs=136.8
Q ss_pred cchhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecccccccc
Q 009135 173 QGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITR 252 (542)
Q Consensus 173 ~~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~ 252 (542)
+.+|.. +++|+||+|+|||||||.+||+|.++... . ..++|...
T Consensus 29 ~~~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~-----~-----------------------~~~~~~~~---- 72 (297)
T cd04059 29 TPAWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDP-----E-----------------------ASYDFNDN---- 72 (297)
T ss_pred HHHHhC----CCCCcceEEEEEeCCcccCCHhHhhcccc-----c-----------------------ccccccCC----
Confidence 457776 79999999999999999999999876420 0 01111110
Q ss_pred CccCCCCCCCCC--CCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHh
Q 009135 253 GIFNSSQDYASP--FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA 330 (542)
Q Consensus 253 ~~~~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~ 330 (542)
.....+ .|..+|||||||||+|..... .+..||||+|+|+.+|++... .....+..++.++.
T Consensus 73 ------~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~ 136 (297)
T cd04059 73 ------DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNP 136 (297)
T ss_pred ------CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhccc
Confidence 001112 277899999999999986532 136899999999999999864 33334555665554
Q ss_pred hCCCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHh-----CCcEEEEecCCCCCCCC--C--CCCCCCcEEEEeccccC
Q 009135 331 QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSPK--S--MSSFSPWIFTVGAASHD 401 (542)
Q Consensus 331 ~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~GilvV~AAGN~G~~~~--~--~~~~~p~vitVgA~~~~ 401 (542)
+ .++|||||||..............+.++++++.. +|++||+||||+|.... . .+...|++|+|||++.+
T Consensus 137 ~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~ 215 (297)
T cd04059 137 D-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN 215 (297)
T ss_pred C-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC
Confidence 4 4599999999754322111223445555555544 69999999999998322 2 22446899999999999
Q ss_pred CcccceeEeCCCeEEEeee
Q 009135 402 RIYTNSIILGNSLTISGVG 420 (542)
Q Consensus 402 ~~~~~~s~~G~~~~~~~~~ 420 (542)
+..+.|+++|..+.+..++
T Consensus 216 g~~~~~s~~g~~~~~~a~g 234 (297)
T cd04059 216 GVRASYSEVGSSVLASAPS 234 (297)
T ss_pred CCCcCCCCCCCcEEEEecC
Confidence 9999999999998885544
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.94 E-value=5.6e-26 Score=220.98 Aligned_cols=167 Identities=23% Similarity=0.205 Sum_probs=127.9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCC
Q 009135 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (542)
Q Consensus 188 Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (542)
||+|||||||||++||+|.+.... +. .+.. . .+ ..+...+.|.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~--------~~-------~~~~---------~-~~------------~~~~~~~~d~ 43 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD--------GE-------VTID---------L-EI------------IVVSAEGGDK 43 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc--------cc-------cccc---------c-cc------------ccCCCCCCCC
Confidence 799999999999999999976430 00 0000 0 00 0112344578
Q ss_pred CCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC
Q 009135 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (542)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (542)
.+|||||||||++. +|+++|+.+|+++..+.+..+++++|++|+++.|++|||||||....
T Consensus 44 ~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~- 104 (222)
T cd07492 44 DGHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD- 104 (222)
T ss_pred CCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC-
Confidence 89999999999853 59999999999998777888899999999999999999999997543
Q ss_pred CCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCcEEEEeccccCCcccceeEeCCCeEEEe
Q 009135 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISG 418 (542)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~~~~ 418 (542)
.....+..+++++.++|+++|+||||++... .+|+..++||+||+++.++..+.+ +...++.+
T Consensus 105 ----~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~-~~Pa~~~~vi~V~~~~~~~~~~~~---~~~~~~~a 167 (222)
T cd07492 105 ----RDFPLLKELLEYAYKAGGIIVAAAPNNNDIG-TPPASFPNVIGVKSDTADDPKSFW---YIYVEFSA 167 (222)
T ss_pred ----CcCHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCCccCCceEEEEecCCCCCcccc---cCCceEEe
Confidence 1235778889999999999999999998753 347778999999999877654433 55555633
No 33
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.94 E-value=2.6e-26 Score=232.48 Aligned_cols=172 Identities=22% Similarity=0.158 Sum_probs=126.5
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCCCC
Q 009135 190 VIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDG 269 (542)
Q Consensus 190 ~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 269 (542)
+|||||||||.+||+|.+.... + ..|. .. ...+.|..+
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~--------~----------------------~~~~----------~~--~~~~~d~~g 39 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAE--------D----------------------DLDS----------DE--PGWTADDLG 39 (291)
T ss_pred EEEEecCCCCCCChhhhhhhcc--------c----------------------cccc----------cC--CCCcCCCCC
Confidence 7999999999999999976420 0 0000 00 011468899
Q ss_pred ChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCC----CCCHHHHHHHHHHHhhCC---CcEEEeccC
Q 009135 270 HGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF----GGFAADVVAAIDQAAQDG---VDIISLSIT 342 (542)
Q Consensus 270 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~----~~~~~~i~~ai~~a~~~g---~~VIN~S~G 342 (542)
|||||||||++..... ....|+||+|+|+.+|++...+ ..+..+++++|+|+++.+ ++|||||||
T Consensus 40 HGT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG 111 (291)
T cd04847 40 HGTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLG 111 (291)
T ss_pred ChHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecC
Confidence 9999999998764321 2367999999999999999864 346678999999999853 489999999
Q ss_pred CCCCCCCCCCcchHHHHHHH-HHHhCCcEEEEecCCCCCCCCC------------CCCCCCcEEEEeccccCCcccceeE
Q 009135 343 PNRRPPGIATFFNPIDMALL-SAAKAGIFVVQAAGNTGPSPKS------------MSSFSPWIFTVGAASHDRIYTNSII 409 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~-~a~~~GilvV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~~~~~~~~s~ 409 (542)
........ ....+..+++ .+.++|++||+||||+|..... .|+.++++|+|||++.++....+++
T Consensus 112 ~~~~~~~~--~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~ 189 (291)
T cd04847 112 SPLPIDDG--RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR 189 (291)
T ss_pred CCCCccCC--CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc
Confidence 86543211 1124455554 3568999999999999987543 2455689999999999988887777
Q ss_pred eCCC
Q 009135 410 LGNS 413 (542)
Q Consensus 410 ~G~~ 413 (542)
+|..
T Consensus 190 ~~~~ 193 (291)
T cd04847 190 YSAV 193 (291)
T ss_pred cccc
Confidence 7643
No 34
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.94 E-value=8.9e-26 Score=225.11 Aligned_cols=182 Identities=35% Similarity=0.372 Sum_probs=138.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCC
Q 009135 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (542)
Q Consensus 185 ~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (542)
+|+||+|+|||+||+.+||+|.+...... .+.. .........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------~~~~-----------------------~~~~~~~~~ 42 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------YYVA-----------------------VNDAGYASN 42 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------cccc-----------------------cccccCCCC
Confidence 69999999999999999999998743100 0000 000001234
Q ss_pred CCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCC-CCCHHHHHHHHHHHhhCCCcEEEeccCC
Q 009135 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAIDQAAQDGVDIISLSITP 343 (542)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~~VIN~S~G~ 343 (542)
.|..+|||||||+|+|..++ ....|+||+|+|+.+|+++..+ ......+.++++++++.+++|||||||.
T Consensus 43 ~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 43 GDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 56789999999999998654 3478999999999999998765 4567788999999999999999999998
Q ss_pred CCCCCCC--------CCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCC---------CCCCCcEEEEeccccCCcccc
Q 009135 344 NRRPPGI--------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM---------SSFSPWIFTVGAASHDRIYTN 406 (542)
Q Consensus 344 ~~~~~~~--------~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~---------~~~~p~vitVgA~~~~~~~~~ 406 (542)
....... ......+..+++.+.++|+++|+||||++...... ++..+++|+|||++.++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~~~~~ 193 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGTIAS 193 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCCCccc
Confidence 6532210 12456788888999999999999999998754433 234589999999999988777
Q ss_pred e--eEeCCC
Q 009135 407 S--IILGNS 413 (542)
Q Consensus 407 ~--s~~G~~ 413 (542)
+ +++|..
T Consensus 194 ~~~s~~~~~ 202 (267)
T cd04848 194 YSYSNRCGV 202 (267)
T ss_pred ccccccchh
Confidence 7 777653
No 35
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.94 E-value=3.3e-26 Score=243.79 Aligned_cols=179 Identities=25% Similarity=0.328 Sum_probs=128.8
Q ss_pred CCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecccccc-ccCccCCCCCCC
Q 009135 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAI-TRGIFNSSQDYA 262 (542)
Q Consensus 184 ~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~-~~~~~~~~~~~~ 262 (542)
++|+||+|||||||||+.||+|.+.+. ..++...|++........ ....++..|..... ..-....+.+..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg--~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~ 72 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDG--TTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIV 72 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCC--CchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccC
Confidence 489999999999999999999997643 246667788766543211 11122222211000 000011122233
Q ss_pred CCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCC----------CCHHHHHHHHHHHhhC
Q 009135 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG----------GFAADVVAAIDQAAQD 332 (542)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~----------~~~~~i~~ai~~a~~~ 332 (542)
...|..||||||||||||+..++ ..+.||||+|+|+++|++...+. +..++++.|++|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 45688999999999999997542 34799999999999999987654 5688999999999874
Q ss_pred -----CCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhC-CcEEEEecCCCCCC
Q 009135 333 -----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPS 381 (542)
Q Consensus 333 -----g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~G~~ 381 (542)
.+.|||||||...++++. .+.++++++.+.++ |++||+||||+|..
T Consensus 145 a~~~~~p~VInlSlG~~~g~~~g---~~~l~~~i~~~~~~~gv~vV~aaGNeg~~ 196 (455)
T cd07478 145 ALELNKPLVINISLGTNFGSHDG---TSLLERYIDAISRLRGIAVVVGAGNEGNT 196 (455)
T ss_pred HHHhCCCeEEEEccCcCCCCCCC---ccHHHHHHHHHHhhCCeEEEEeCCCCCCc
Confidence 477999999987665433 46788888888776 99999999999974
No 36
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.92 E-value=2.5e-24 Score=216.75 Aligned_cols=181 Identities=34% Similarity=0.531 Sum_probs=137.4
Q ss_pred EEEEEcCCCCCCCCCCC-CCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCCCCCCCC
Q 009135 190 VIGFIDTGIDPTHPSFA-DDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (542)
Q Consensus 190 ~VaViDtGvd~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (542)
+|||||||||++||+|. ++.. ..++.+.+.|.+.. .......|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~-------------------------~~~~~~~~~~~~~~---------~~~~~~~~~~ 46 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFI-------------------------WSKVPGGYNFVDGN---------PNPSPSDDDN 46 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEE-------------------------EEEEEEEEETTTTB---------STTTSSSTSS
T ss_pred CEEEEcCCcCCCChhHccCCcc-------------------------cccccceeeccCCC---------CCcCccccCC
Confidence 69999999999999999 4421 12334445554431 1123446788
Q ss_pred CChhhhhhhhhccC-CCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHh-hCCCcEEEeccCCCCC
Q 009135 269 GHGSHTASVAAGNH-GIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRR 346 (542)
Q Consensus 269 gHGThVAGiiag~~-~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~VIN~S~G~~~~ 346 (542)
+|||||||+|++.. ..+ ....|+||+|+|+.+|++...+ ....+++.++++++ +.+++|||||||....
T Consensus 47 ~HGT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~ 117 (282)
T PF00082_consen 47 GHGTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSG 117 (282)
T ss_dssp SHHHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEES
T ss_pred Cccchhhhhccccccccc--------cccccccccccccccccccccc-cccccccchhhhhhhccCCcccccccccccc
Confidence 99999999999986 221 2468999999999999988764 77888999999999 8999999999987321
Q ss_pred CCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCcEEEEeccccCCcccceeEeCCCe
Q 009135 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (542)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~ 414 (542)
. ......+.++.+++.+.++|+++|+||||+|.... ..|+..+++|+||+++.++....|+++|...
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~~~~~~~s~~g~~~ 187 (282)
T PF00082_consen 118 P-PDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNNGQPASYSNYGGPS 187 (282)
T ss_dssp S-SHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETTSSBSTTSSBSTTE
T ss_pred c-cccccccccccccccccccCcceeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 11223456778888999999999999999998754 3666679999999999888888899987665
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-25 Score=226.07 Aligned_cols=174 Identities=22% Similarity=0.332 Sum_probs=143.3
Q ss_pred chhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccC
Q 009135 174 GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG 253 (542)
Q Consensus 174 ~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~ 253 (542)
..|.. |+||++|+|||+|||+.-+||.|+.-.- -.+ +.|.
T Consensus 192 ~LWk~----GyTGa~VkvAiFDTGl~~~HPHFrnvKE----------------RTN----WTNE---------------- 231 (1033)
T KOG4266|consen 192 HLWKK----GYTGAKVKVAIFDTGLRADHPHFRNVKE----------------RTN----WTNE---------------- 231 (1033)
T ss_pred hHHhc----cccCCceEEEEeecccccCCccccchhh----------------hcC----CcCc----------------
Confidence 45665 9999999999999999999999986321 001 1111
Q ss_pred ccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCC
Q 009135 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDG 333 (542)
Q Consensus 254 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g 333 (542)
..-.|..||||.|||+|||... ..|.||+++|++.|||.+..-.+.++.++|+.||+...
T Consensus 232 --------~tLdD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~k 291 (1033)
T KOG4266|consen 232 --------DTLDDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATK 291 (1033)
T ss_pred --------cccccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhh
Confidence 2234678999999999999853 68999999999999999877788999999999999999
Q ss_pred CcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCC--CcEEEEeccccCCcccceeEeC
Q 009135 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFS--PWIFTVGAASHDRIYTNSIILG 411 (542)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~~~~~--p~vitVgA~~~~~~~~~~s~~G 411 (542)
+||+|+|+|++ ++...++-+-+......+|++|.|+||+||-..+..+++ ..||.||..+.++.++.||+.|
T Consensus 292 idvLNLSIGGP------DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdfdD~IA~FSSRG 365 (1033)
T KOG4266|consen 292 IDVLNLSIGGP------DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDFDDHIASFSSRG 365 (1033)
T ss_pred cceEeeccCCc------ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccccchhhhhccCC
Confidence 99999999985 334455656666788899999999999999888776665 6899999999999999999887
Q ss_pred CC
Q 009135 412 NS 413 (542)
Q Consensus 412 ~~ 413 (542)
-.
T Consensus 366 Mt 367 (1033)
T KOG4266|consen 366 MT 367 (1033)
T ss_pred cc
Confidence 43
No 38
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.88 E-value=2.8e-21 Score=188.52 Aligned_cols=142 Identities=34% Similarity=0.466 Sum_probs=119.1
Q ss_pred CCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHh-hCCCcEEEeccC
Q 009135 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSIT 342 (542)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~VIN~S~G 342 (542)
..+..+|||||+++|++..... ...|+||+++|+.+|+...........+++++++++ ..+++|||||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g 110 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG 110 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCC
Confidence 3567899999999999986542 237999999999999998876677888999999999 899999999999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CCCCCCCcEEEEeccccCCccc-ceeEeCCCeEEE
Q 009135 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYT-NSIILGNSLTIS 417 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~-~~s~~G~~~~~~ 417 (542)
..... ....+..++.++.++ |+++|+||||.+.... ..|+..+++|+||+++...... .++..+...++.
T Consensus 111 ~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~ 185 (241)
T cd00306 111 GPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIA 185 (241)
T ss_pred CCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCccCCcCCCCCCceEE
Confidence 85432 235677888888888 9999999999998866 5777889999999999988876 777788888874
Q ss_pred ee
Q 009135 418 GV 419 (542)
Q Consensus 418 ~~ 419 (542)
.+
T Consensus 186 ap 187 (241)
T cd00306 186 AP 187 (241)
T ss_pred eC
Confidence 43
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=194.31 Aligned_cols=137 Identities=26% Similarity=0.317 Sum_probs=103.7
Q ss_pred CCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCC--CCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 009135 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (542)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~VIN~S~G~~ 344 (542)
..-||||||||++|+....+ ...||||+|+|+++++.+..-+ -+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 45799999999999976542 3679999999999999875322 1334589999999999999999999976
Q ss_pred CCCCCCCCcchHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCC---CCcEEEEeccccCC--------------cccce
Q 009135 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAASHDR--------------IYTNS 407 (542)
Q Consensus 345 ~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~--------------~~~~~ 407 (542)
..+.+. -+.++.+-+...+.|+++|.||||.||.-++++++ ..++|.|||.-..+ ....|
T Consensus 381 a~~pn~---GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~~e~vp~~~YtW 457 (1304)
T KOG1114|consen 381 AHLPNS---GRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSVREPVPSNPYTW 457 (1304)
T ss_pred CCCCCc---chHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhhhccCCCCcccc
Confidence 655433 24444444556689999999999999988887665 36899999963222 34456
Q ss_pred eEeCCCe
Q 009135 408 IILGNSL 414 (542)
Q Consensus 408 s~~G~~~ 414 (542)
++.|++.
T Consensus 458 sSRgP~~ 464 (1304)
T KOG1114|consen 458 SSRGPCL 464 (1304)
T ss_pred ccCCCCc
Confidence 7777653
No 40
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.80 E-value=4.5e-19 Score=174.34 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=90.3
Q ss_pred CCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHH--hhCCCcEEEecc
Q 009135 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA--AQDGVDIISLSI 341 (542)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a--~~~g~~VIN~S~ 341 (542)
..|.++|||||||||+|.. |++|+++|+..++.... .+.+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~~----~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIKS----NNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCCC----CCccHHHHHHHHHhcCCceEEEeCC
Confidence 3578999999999999862 56799999876553322 22355666777 668999999999
Q ss_pred CCCCCCCCC--CCcchHHHHHHHHHHhC-CcEEEEecCCCCCCCC-----CCCCCCCcEEEEeccccCCcccce
Q 009135 342 TPNRRPPGI--ATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPK-----SMSSFSPWIFTVGAASHDRIYTNS 407 (542)
Q Consensus 342 G~~~~~~~~--~~~~~~~~~a~~~a~~~-GilvV~AAGN~G~~~~-----~~~~~~p~vitVgA~~~~~~~~~~ 407 (542)
|........ ......+..+++.+.++ |+++|+||||+|.+.. ..|+.++++|+|||++.++..+.+
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~~~~ 167 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDRFFA 167 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCccee
Confidence 976442100 01234677788877766 9999999999998532 335567899999999988865433
No 41
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.5e-17 Score=163.22 Aligned_cols=181 Identities=21% Similarity=0.341 Sum_probs=125.7
Q ss_pred cchhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecccccccc
Q 009135 173 QGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITR 252 (542)
Q Consensus 173 ~~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~ 252 (542)
..+|.. +++|++|+++|+|.||||-||+|+.+ |+.... |+|+.
T Consensus 151 ~~awa~----g~tgknvttaimddgvdymhpdlk~n-----ynaeas-----------------------ydfss----- 193 (629)
T KOG3526|consen 151 AEAWAL----GYTGKNVTTAIMDDGVDYMHPDLKSN-----YNAEAS-----------------------YDFSS----- 193 (629)
T ss_pred HHHHhh----cccCCCceEEeecCCchhcCcchhcc-----cCceee-----------------------ccccc-----
Confidence 357877 99999999999999999999999965 222222 22222
Q ss_pred CccCCCCCCCCCC--C--CCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHH
Q 009135 253 GIFNSSQDYASPF--D--GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (542)
Q Consensus 253 ~~~~~~~~~~~~~--d--~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (542)
+++++.|+ | .+.|||.|||-+++..+++++ ..|||.+.++..+|+++. .++.|+++|-..
T Consensus 194 -----ndpfpyprytddwfnshgtrcagev~aardngic--------gvgvaydskvagirmldq---pymtdlieansm 257 (629)
T KOG3526|consen 194 -----NDPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQ---PYMTDLIEANSM 257 (629)
T ss_pred -----CCCCCCCcccchhhhccCccccceeeeeccCCce--------eeeeeeccccceeeecCC---chhhhhhhhccc
Confidence 11122222 2 378999999998887777653 479999999999999985 477888877543
Q ss_pred Hhh-CCCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHh-----CCcEEEEecCCCCCCC-CCCC--CCCCcEEEEeccc
Q 009135 329 AAQ-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSP-KSMS--SFSPWIFTVGAAS 399 (542)
Q Consensus 329 a~~-~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~GilvV~AAGN~G~~~-~~~~--~~~p~vitVgA~~ 399 (542)
.-. ..++|.+-|||........+......-+|+-+-++ .|-+.|+|+|..|.+. +... +.+-|.|++-+.-
T Consensus 258 ghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsai 337 (629)
T KOG3526|consen 258 GHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAI 337 (629)
T ss_pred CCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhh
Confidence 322 35789999999866543334444555566655555 4679999999999653 3332 3357999998877
Q ss_pred cCCcccc
Q 009135 400 HDRIYTN 406 (542)
Q Consensus 400 ~~~~~~~ 406 (542)
+++..+.
T Consensus 338 ndg~nah 344 (629)
T KOG3526|consen 338 NDGENAH 344 (629)
T ss_pred cCCcccc
Confidence 7765443
No 42
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-16 Score=171.63 Aligned_cols=187 Identities=29% Similarity=0.402 Sum_probs=143.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeeccccccccCccCCCCCCC
Q 009135 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (542)
Q Consensus 183 ~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 262 (542)
+++|+|++|+|||+||+..||+|.+..... ++|.+.. ...
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~~------------------------------~~~~~~~----------~~~ 177 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVAG------------------------------GDFVDGD----------PEP 177 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhcccccc------------------------------cccccCC----------CCC
Confidence 689999999999999999999999764300 1111110 000
Q ss_pred CCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCC-CCCCHHHHHHHHHHHhhCC--CcEEEe
Q 009135 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS-FGGFAADVVAAIDQAAQDG--VDIISL 339 (542)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-~~~~~~~i~~ai~~a~~~g--~~VIN~ 339 (542)
...|..+|||||+|++++....+ .....|++|+++++.++++... +.+..++++.+++++++.+ +++|||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 24688999999999999842110 0237899999999999999976 6778888999999999999 999999
Q ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHhCC-cEEEEecCCCCCCCC----CCCCCCC--cEEEEeccccCCcccceeEeCC
Q 009135 340 SITPNRRPPGIATFFNPIDMALLSAAKAG-IFVVQAAGNTGPSPK----SMSSFSP--WIFTVGAASHDRIYTNSIILGN 412 (542)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~G-ilvV~AAGN~G~~~~----~~~~~~p--~vitVgA~~~~~~~~~~s~~G~ 412 (542)
|+|.. . .......+..++..+...| +++|+++||.|.+.. .+|...+ .+++||+++.......|++.|.
T Consensus 251 s~g~~-~---~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~~~~~~~~s~~g~ 326 (508)
T COG1404 251 SLGGS-L---SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGS 326 (508)
T ss_pred cCCCC-c---cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCCCCccccccccCC
Confidence 99975 1 1223467888888888888 999999999998752 3444444 8999999999788899999997
Q ss_pred C--eEEEeee
Q 009135 413 S--LTISGVG 420 (542)
Q Consensus 413 ~--~~~~~~~ 420 (542)
. +++..++
T Consensus 327 ~~~~~~~apg 336 (508)
T COG1404 327 PTGVDIAAPG 336 (508)
T ss_pred CCCcceeCCC
Confidence 4 6664443
No 43
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.40 E-value=1e-12 Score=113.33 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=65.2
Q ss_pred CcccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcccc-cc--CCCCCCccEEEeC
Q 009135 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF-QL--NPTPMKMPGIIIP 525 (542)
Q Consensus 449 ~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~-~~--~~~~~~iP~~~i~ 525 (542)
+...|. +.++.+.+++|||+|++| |.|+|.+|+.||+++||+|||||||...... .. .....+||+++|+
T Consensus 29 ~~~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is 101 (120)
T cd02129 29 SSVLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLS 101 (120)
T ss_pred CcCCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEe
Confidence 345797 556777789999999999 8999999999999999999999999653111 11 1245689999999
Q ss_pred hhhHHHHHHHh
Q 009135 526 SPDDSKVQFLC 536 (542)
Q Consensus 526 ~~~g~~l~~~~ 536 (542)
+++|++|+...
T Consensus 102 ~~dG~~i~~~l 112 (120)
T cd02129 102 YKDMLDIQQTF 112 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999997654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.38 E-value=5.5e-12 Score=111.35 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=85.7
Q ss_pred eEeCCCeEEEeeecCCCCCCceeEEeeccccCCCccccCCcCcccCCCCCCCCccCccccEEEEeeccccccCcc-cHHH
Q 009135 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS-TIKQ 486 (542)
Q Consensus 408 s~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~-~~~~ 486 (542)
..+|++..+.|.+++++....+++++..... .......|. ...+...+++||||||+| |.| .+.+
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~-------~~~~~~~C~-~~~~~~~~v~GkIVlc~~------~~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANS-------GDVDASLCL-PGSLDPSKVKGKIVLCDR------GGNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcC-------CCCccccCC-CCCCChhhccccEEEEeC------CCCccHHH
Confidence 4678999999999997653355666522211 134457897 445666889999999998 678 8999
Q ss_pred HHHHHHhCCceEEEEecccCccccccCCCCCCccEEEeChhhHHHHHHHhh
Q 009135 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKVQFLCL 537 (542)
Q Consensus 487 k~~~a~~aGa~gvii~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~ 537 (542)
|..+++++||.|||++|+..... ........||+++|++++|..|++.+.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~-~~~~~~~~iP~v~I~~~~g~~l~~y~~ 117 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGL-DVVADAHVLPAVHVDYEDGTAILSYIN 117 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCc-eecccccccceEEECHHHHHHHHHHHH
Confidence 99999999999999999865422 222224679999999999999877653
No 45
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.31 E-value=6.2e-12 Score=111.61 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=58.2
Q ss_pred CCccCccccEEEEeeccccccCccc-----HHHHHHHHHhCCceEEEEecccCccc---cccCC-C-CCCccEEEeChhh
Q 009135 459 FNQDLVQGNLLICSYSIRFVLGLST-----IKQAFETAKNLSAAGIVFYMDPFVIG---FQLNP-T-PMKMPGIIIPSPD 528 (542)
Q Consensus 459 ~~~~~~~Gkivl~~r~~~~~~g~~~-----~~~k~~~a~~aGa~gvii~n~~~~~~---~~~~~-~-~~~iP~~~i~~~~ 528 (542)
+.+.+++|||+|++| |.|+ |.+|++||+++||+|||||||....+ ..+.. . ...||+++|++++
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~d 123 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRAD 123 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHH
Confidence 555689999999999 8899 99999999999999999999973212 12222 2 4689999999999
Q ss_pred HHHHHHH
Q 009135 529 DSKVQFL 535 (542)
Q Consensus 529 g~~l~~~ 535 (542)
|++|+..
T Consensus 124 G~~L~~~ 130 (139)
T cd04817 124 GQALLAA 130 (139)
T ss_pred HHHHHHH
Confidence 9999765
No 46
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.28 E-value=1.4e-11 Score=107.03 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=62.3
Q ss_pred cccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcc-c--cccC----CCCCCccEE
Q 009135 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-G--FQLN----PTPMKMPGI 522 (542)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~-~--~~~~----~~~~~iP~~ 522 (542)
...|..+ .+..+++|||+|++| |+|+|.+|+.||+++||++|||||+.... . ..+. .....||++
T Consensus 21 ~~gC~~~--~~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEEL--RNIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCC--CCccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 4679732 235689999999999 89999999999999999999999985431 1 1122 234579999
Q ss_pred EeChhhHHHHHHHh
Q 009135 523 IIPSPDDSKVQFLC 536 (542)
Q Consensus 523 ~i~~~~g~~l~~~~ 536 (542)
+|++++|+.|++..
T Consensus 93 ~Is~~dG~~L~~~l 106 (118)
T cd02127 93 FLLGKNGYMIRKTL 106 (118)
T ss_pred EecHHHHHHHHHHH
Confidence 99999999997753
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.26 E-value=5.2e-11 Score=104.51 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=63.4
Q ss_pred ccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcccc--ccCC--CCCCccEEEeCh
Q 009135 451 GECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF--QLNP--TPMKMPGIIIPS 526 (542)
Q Consensus 451 ~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~--~~~~--~~~~iP~~~i~~ 526 (542)
..|. +.++...+++||||||+| |.|+|.+|+.||+++||+|+||||+...... .+.. ....||+++|++
T Consensus 30 ~gC~-~~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~ 102 (122)
T cd04816 30 AGCD-ASDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITK 102 (122)
T ss_pred cCCC-ccccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcH
Confidence 6796 456667789999999999 8899999999999999999999998653111 1111 345699999999
Q ss_pred hhHHHHHHHh
Q 009135 527 PDDSKVQFLC 536 (542)
Q Consensus 527 ~~g~~l~~~~ 536 (542)
++|++|+...
T Consensus 103 ~~G~~l~~~l 112 (122)
T cd04816 103 AAGAALRRRL 112 (122)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 48
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.25 E-value=2.6e-11 Score=102.53 Aligned_cols=74 Identities=20% Similarity=0.403 Sum_probs=58.9
Q ss_pred CCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCc---cccccCCCCCCccEEEeChhhHHHH
Q 009135 456 SSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV---IGFQLNPTPMKMPGIIIPSPDDSKV 532 (542)
Q Consensus 456 ~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~---~~~~~~~~~~~iP~~~i~~~~g~~l 532 (542)
+.++...+++||||||+| |.|+|.+|+.+|+++||+|+||||+... ...........||+++|++++|++|
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345677899999999999 8999999999999999999999992111 1222345567899999999999999
Q ss_pred HHH
Q 009135 533 QFL 535 (542)
Q Consensus 533 ~~~ 535 (542)
++.
T Consensus 98 ~~~ 100 (101)
T PF02225_consen 98 LAY 100 (101)
T ss_dssp HHH
T ss_pred hcc
Confidence 875
No 49
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.24 E-value=4.1e-11 Score=106.89 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=63.9
Q ss_pred cCcccCCCCCCC--CccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccC-cc-cccc-CCCCCCccEE
Q 009135 448 MYVGECQDSSNF--NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF-VI-GFQL-NPTPMKMPGI 522 (542)
Q Consensus 448 ~~~~~c~~~~~~--~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~-~~-~~~~-~~~~~~iP~~ 522 (542)
.+...|.. ... .+.++.|+|||++| |.|+|.+|+.||+++||++|||||+.. .. ...+ ......||++
T Consensus 42 ~~~~gC~~-~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v 114 (138)
T cd02122 42 NDHYGCDP-DTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAI 114 (138)
T ss_pred CCcCCCCC-CccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEE
Confidence 34568973 333 45679999999999 899999999999999999999999965 21 1222 2233579999
Q ss_pred EeChhhHHHHHHHh
Q 009135 523 IIPSPDDSKVQFLC 536 (542)
Q Consensus 523 ~i~~~~g~~l~~~~ 536 (542)
+|++++|+.|++..
T Consensus 115 ~Is~~~G~~l~~~l 128 (138)
T cd02122 115 MITNPKGMEILELL 128 (138)
T ss_pred EEcHHHHHHHHHHH
Confidence 99999999998763
No 50
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.22 E-value=3.9e-11 Score=103.91 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=62.2
Q ss_pred cCcccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCccc-ccc----CCCCCCccEE
Q 009135 448 MYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG-FQL----NPTPMKMPGI 522 (542)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~-~~~----~~~~~~iP~~ 522 (542)
.+...|. +. +.++++|||||++| |.|+|.+|+.||+++||++|||||+..... ..+ ......||++
T Consensus 25 ~p~~gC~-~~--~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav 95 (117)
T cd04813 25 SPTDACS-LQ--EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAM 95 (117)
T ss_pred CCCCCCC-CC--CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEE
Confidence 3456896 32 56789999999999 899999999999999999999999855321 111 1234589999
Q ss_pred EeChhhHHHHHHH
Q 009135 523 IIPSPDDSKVQFL 535 (542)
Q Consensus 523 ~i~~~~g~~l~~~ 535 (542)
+|++++|+.|...
T Consensus 96 ~Is~~~g~~L~~l 108 (117)
T cd04813 96 FTSRTSYHLLSSL 108 (117)
T ss_pred EEcHHHHHHHHHh
Confidence 9999999988653
No 51
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.20 E-value=5.1e-11 Score=108.49 Aligned_cols=82 Identities=7% Similarity=0.146 Sum_probs=63.6
Q ss_pred cccCCCCCCCC---ccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCccccccCC-----CCCCccE
Q 009135 450 VGECQDSSNFN---QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNP-----TPMKMPG 521 (542)
Q Consensus 450 ~~~c~~~~~~~---~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~~~~-----~~~~iP~ 521 (542)
..+|.. .... ..++.|||||++| |.|+|.+|+.||+++||+|+||||+.......+.. ....||+
T Consensus 50 ~~gC~~-~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~ 122 (153)
T cd02123 50 LNACSP-IENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPS 122 (153)
T ss_pred cccCCC-CcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEE
Confidence 457863 2232 3789999999999 88999999999999999999999986432222221 2458999
Q ss_pred EEeChhhHHHHHHHhhh
Q 009135 522 IIIPSPDDSKVQFLCLL 538 (542)
Q Consensus 522 ~~i~~~~g~~l~~~~~~ 538 (542)
++|++++|..|+...-.
T Consensus 123 v~Is~~dg~~L~~~l~~ 139 (153)
T cd02123 123 VFVGKSTGEILKKYASY 139 (153)
T ss_pred EEeeHHHHHHHHHHHhc
Confidence 99999999999766533
No 52
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.20 E-value=5.5e-11 Score=123.97 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=83.7
Q ss_pred CcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhC---CCcEEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEE
Q 009135 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV 371 (542)
Q Consensus 295 ~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gilv 371 (542)
...||||+|+|+.+++.+.. ..+++.++.+++.+ +++|||+|||....... ..+.+.+++++.++..+||+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEE
Confidence 36799999999999998763 33467777777776 99999999998643211 223467889999999999999
Q ss_pred EEecCCCCCCCC-----------CCCCCCCcEEEEeccccCCccc
Q 009135 372 VQAAGNTGPSPK-----------SMSSFSPWIFTVGAASHDRIYT 405 (542)
Q Consensus 372 V~AAGN~G~~~~-----------~~~~~~p~vitVgA~~~~~~~~ 405 (542)
|+||||+|.... .+|+..|+|++||+++......
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~~ 201 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGGT 201 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCCc
Confidence 999999997643 3577889999999998766443
No 53
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.20 E-value=4.9e-11 Score=105.06 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=61.2
Q ss_pred cccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcc-----c-cccC-----CCCCC
Q 009135 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-----G-FQLN-----PTPMK 518 (542)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~-----~-~~~~-----~~~~~ 518 (542)
...|.. .. .+.+++|||+|++| |.|+|.+|+.+|+++||.|+||||+.... . ..+. .....
T Consensus 27 ~~gC~~-~~-~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSE-IT-NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccC-CC-CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 467973 22 35679999999999 89999999999999999999999875431 1 1111 12468
Q ss_pred ccEEEeChhhHHHHHHH
Q 009135 519 MPGIIIPSPDDSKVQFL 535 (542)
Q Consensus 519 iP~~~i~~~~g~~l~~~ 535 (542)
||+++|++.+|++|+..
T Consensus 99 IP~v~I~~~dG~~L~~~ 115 (126)
T cd02126 99 IPVVFLFSKEGSKLLAA 115 (126)
T ss_pred EEEEEEEHHHHHHHHHH
Confidence 99999999999999865
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.18 E-value=1.8e-10 Score=101.15 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=60.2
Q ss_pred ccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEeccc-Cccc--cccCCCCCCccEEEeChh
Q 009135 451 GECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP-FVIG--FQLNPTPMKMPGIIIPSP 527 (542)
Q Consensus 451 ~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~-~~~~--~~~~~~~~~iP~~~i~~~ 527 (542)
..|. +.++ +.+++|||||++| |.|+|.+|++||+++||+|+||||+. .... .........||+++|+++
T Consensus 32 ~gC~-~~~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~ 103 (122)
T cd02130 32 LGCD-AADY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQE 103 (122)
T ss_pred CCCC-cccC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHH
Confidence 3676 3344 3579999999999 88999999999999999999999986 3211 111223457999999999
Q ss_pred hHHHHHHH
Q 009135 528 DDSKVQFL 535 (542)
Q Consensus 528 ~g~~l~~~ 535 (542)
+|+.|++.
T Consensus 104 ~G~~L~~~ 111 (122)
T cd02130 104 DGKALVAA 111 (122)
T ss_pred HHHHHHHH
Confidence 99999875
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.16 E-value=1.3e-10 Score=102.13 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=54.7
Q ss_pred CccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcccccc----------CCCCCCccEEEeChhhHHHH
Q 009135 463 LVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL----------NPTPMKMPGIIIPSPDDSKV 532 (542)
Q Consensus 463 ~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~~----------~~~~~~iP~~~i~~~~g~~l 532 (542)
...++|||++| |+|+|.+|+.||+++||+++||||+.......+ ......||+++|++++|+.|
T Consensus 40 ~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L 113 (127)
T cd02125 40 GRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSALITKAFGEKL 113 (127)
T ss_pred CCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeEEEECHHHHHHH
Confidence 37889999999 899999999999999999999999955322222 11235799999999999999
Q ss_pred HHH
Q 009135 533 QFL 535 (542)
Q Consensus 533 ~~~ 535 (542)
+..
T Consensus 114 ~~~ 116 (127)
T cd02125 114 KKA 116 (127)
T ss_pred HHH
Confidence 775
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.14 E-value=1.6e-10 Score=101.84 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=67.0
Q ss_pred cCcccCCCCCC--CCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCccccccC-----CCCCCcc
Q 009135 448 MYVGECQDSSN--FNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLN-----PTPMKMP 520 (542)
Q Consensus 448 ~~~~~c~~~~~--~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~~~-----~~~~~iP 520 (542)
.+..+|. +.. +...+++||||||+| |.|+|.+|+.+|+++||+|+||||+.......+. .....||
T Consensus 28 ~~~~~C~-~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP 100 (126)
T cd00538 28 GPLVGCG-YGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIP 100 (126)
T ss_pred cceEEEe-cCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEe
Confidence 4456786 344 566789999999998 7799999999999999999999998653211111 2346799
Q ss_pred EEEeChhhHHHHHHHhhhhh
Q 009135 521 GIIIPSPDDSKVQFLCLLCR 540 (542)
Q Consensus 521 ~~~i~~~~g~~l~~~~~~~~ 540 (542)
+++|++++|++|+...-.+.
T Consensus 101 ~~~is~~~g~~l~~~~~~~~ 120 (126)
T cd00538 101 TVGISYADGEALLSLLEAGK 120 (126)
T ss_pred EEEeCHHHHHHHHHHHhcCC
Confidence 99999999999998775443
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.13 E-value=1.6e-10 Score=103.53 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=60.4
Q ss_pred cccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcc-ccccC----CCCCCccEEEe
Q 009135 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQLN----PTPMKMPGIII 524 (542)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~-~~~~~----~~~~~iP~~~i 524 (542)
...|.. . +.+++|||||++| |.|+|.+|+.||+++||++|||||+.... .+... .....||+++|
T Consensus 48 ~~gC~~-~---~~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSP-S---TSKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCC-C---CcccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 467973 2 2479999999999 89999999999999999999999985431 11111 12468999999
Q ss_pred ChhhHHHHHHHh
Q 009135 525 PSPDDSKVQFLC 536 (542)
Q Consensus 525 ~~~~g~~l~~~~ 536 (542)
++++|++|++..
T Consensus 118 s~~~G~~L~~~l 129 (139)
T cd02132 118 PQSAGDALNKSL 129 (139)
T ss_pred cHHHHHHHHHHH
Confidence 999999998753
No 58
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.13 E-value=2.3e-10 Score=103.38 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=59.5
Q ss_pred CCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCccccccCCCCCCccEEEeChhhHHHHHHHh
Q 009135 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKVQFLC 536 (542)
Q Consensus 457 ~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~ 536 (542)
.++...+++||||||+| |.|+|.+|+.+|+++||+||||||+..............||+++|++++|+.|+..+
T Consensus 39 ~d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l 112 (143)
T cd02133 39 EDFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAAL 112 (143)
T ss_pred hccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHH
Confidence 34556789999999998 779999999999999999999999865321111112357999999999999998765
Q ss_pred h
Q 009135 537 L 537 (542)
Q Consensus 537 ~ 537 (542)
.
T Consensus 113 ~ 113 (143)
T cd02133 113 E 113 (143)
T ss_pred h
Confidence 3
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.12 E-value=3.5e-10 Score=99.78 Aligned_cols=80 Identities=13% Similarity=0.060 Sum_probs=60.5
Q ss_pred cCcccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCccccccCCCCCCccEEEeChh
Q 009135 448 MYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSP 527 (542)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~~~~~~~~iP~~~i~~~ 527 (542)
.+...|.. .+.+.++++|||||++| |.|+|.+|+.||+++||++|||||+..............+|.+.+ ++
T Consensus 39 ~~~~gC~~-~~~~~~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~ 110 (129)
T cd02124 39 VADDACQP-LPDDTPDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PE 110 (129)
T ss_pred CCcccCcC-CCcccccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HH
Confidence 34468963 32333579999999999 789999999999999999999999865322222333445777777 99
Q ss_pred hHHHHHHH
Q 009135 528 DDSKVQFL 535 (542)
Q Consensus 528 ~g~~l~~~ 535 (542)
+|++|++.
T Consensus 111 ~G~~l~~~ 118 (129)
T cd02124 111 DGEAWIDA 118 (129)
T ss_pred HHHHHHHH
Confidence 99999875
No 60
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.08 E-value=4.8e-10 Score=97.83 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=63.0
Q ss_pred cCcccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcc-ccccCC--CCCCccEEEe
Q 009135 448 MYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQLNP--TPMKMPGIII 524 (542)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~-~~~~~~--~~~~iP~~~i 524 (542)
.+...|. +... ..+++||||||+| |.|+|.+|+.+|+++||+|+||||+.... .+.+.. ....||+++|
T Consensus 25 ~~~~~C~-~~~~-~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V 96 (118)
T cd04818 25 SNTDGCT-AFTN-AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMI 96 (118)
T ss_pred CcccccC-CCCc-CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEe
Confidence 3446796 3434 3569999999998 77999999999999999999999986531 222221 2357999999
Q ss_pred ChhhHHHHHHHhh
Q 009135 525 PSPDDSKVQFLCL 537 (542)
Q Consensus 525 ~~~~g~~l~~~~~ 537 (542)
++++|+.|+..+.
T Consensus 97 ~~~~g~~l~~~l~ 109 (118)
T cd04818 97 SQADGDALKAALA 109 (118)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999887643
No 61
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.03 E-value=1.7e-09 Score=95.53 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCccCccccEEEEeeccccccCcc--cHHHHHHHHHhCCceEEEEecccCcccc--cc----CCCCCCccEEEeChhhHH
Q 009135 459 FNQDLVQGNLLICSYSIRFVLGLS--TIKQAFETAKNLSAAGIVFYMDPFVIGF--QL----NPTPMKMPGIIIPSPDDS 530 (542)
Q Consensus 459 ~~~~~~~Gkivl~~r~~~~~~g~~--~~~~k~~~a~~aGa~gvii~n~~~~~~~--~~----~~~~~~iP~~~i~~~~g~ 530 (542)
+...+++|||||++| |.| +|.+|+++|+++||+|+|+||+...... .. ......||+++|+++||+
T Consensus 38 ~~~~~v~GkIvlv~~------g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~ 111 (127)
T cd04819 38 FDGLDLEGKIAVVKR------DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGL 111 (127)
T ss_pred cCCCCCCCeEEEEEc------CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHH
Confidence 445679999999999 677 8999999999999999999997543211 11 123457999999999999
Q ss_pred HHHHHh
Q 009135 531 KVQFLC 536 (542)
Q Consensus 531 ~l~~~~ 536 (542)
+|+...
T Consensus 112 ~L~~~l 117 (127)
T cd04819 112 RLARVA 117 (127)
T ss_pred HHHHHH
Confidence 997653
No 62
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.79 E-value=2.6e-08 Score=80.71 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=40.7
Q ss_pred CCCeeEEEEeceeeeeEEEEeCHHHHHHHhcCCCcEEEEecccccc
Q 009135 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (542)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~ 160 (542)
..+.++.+.|...++||+++++++++++|+++|+|++|+||..+++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l 81 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL 81 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence 4478999999989999999999999999999999999999998765
No 63
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.52 E-value=2.1e-07 Score=86.29 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=55.3
Q ss_pred ccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCccccc-----------------------------
Q 009135 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ----------------------------- 511 (542)
Q Consensus 461 ~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~----------------------------- 511 (542)
..+++||||||+| |.|++.+|+++|+++||+||||||++......
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~ 124 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQ 124 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccc
Confidence 4589999999999 78999999999999999999999984221100
Q ss_pred cCC----CCCCccEEEeChhhHHHHHHHh
Q 009135 512 LNP----TPMKMPGIIIPSPDDSKVQFLC 536 (542)
Q Consensus 512 ~~~----~~~~iP~~~i~~~~g~~l~~~~ 536 (542)
... .-..||++-|+++++..||...
T Consensus 125 ~~~~~~~~lP~IPs~PIS~~da~~lL~~l 153 (183)
T cd02128 125 FPPSQSSGLPNIPAQTISAAAAAKLLSKM 153 (183)
T ss_pred cCcccccCCCCCCEeccCHHHHHHHHHHc
Confidence 000 1246999999999999999764
No 64
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.44 E-value=4.3e-07 Score=80.91 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=55.2
Q ss_pred CCccCccccEEEEeeccccccCcc------cHHHH-------HHHHHhCCceEEEEecccCc------cccccC-CCCCC
Q 009135 459 FNQDLVQGNLLICSYSIRFVLGLS------TIKQA-------FETAKNLSAAGIVFYMDPFV------IGFQLN-PTPMK 518 (542)
Q Consensus 459 ~~~~~~~Gkivl~~r~~~~~~g~~------~~~~k-------~~~a~~aGa~gvii~n~~~~------~~~~~~-~~~~~ 518 (542)
++..+++|||||++| +.| +|.+| .++|+++||.|+|++|+... .+.... .....
T Consensus 33 ~~~~~v~GKIvlv~~------~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~ 106 (134)
T cd04815 33 APAGAVKGKIVFFNQ------PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPK 106 (134)
T ss_pred cchhhcCCeEEEecC------CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCC
Confidence 445789999999999 789 89888 69999999999999996322 111111 23357
Q ss_pred ccEEEeChhhHHHHHHH
Q 009135 519 MPGIIIPSPDDSKVQFL 535 (542)
Q Consensus 519 iP~~~i~~~~g~~l~~~ 535 (542)
||++.|+++|+..|...
T Consensus 107 IP~v~is~ed~~~L~r~ 123 (134)
T cd04815 107 IPAAAISVEDADMLERL 123 (134)
T ss_pred CCEEEechhcHHHHHHH
Confidence 99999999999998654
No 65
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.30 E-value=5.9e-06 Score=74.57 Aligned_cols=99 Identities=9% Similarity=-0.047 Sum_probs=64.3
Q ss_pred CCceeEEeeccccCCCccccCCcCcccCCCCCCCCccCccccEEEEeecccc------c-c-----CcccHHHHHHHHHh
Q 009135 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRF------V-L-----GLSTIKQAFETAKN 493 (542)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~------~-~-----g~~~~~~k~~~a~~ 493 (542)
....++|+.+.... ...|. ..++...+++||||||.|+.+. . . .-|++..|+++|++
T Consensus 19 ~vtg~lVfvGyGi~----------~~~~~-~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~ 87 (151)
T cd04822 19 AVTAPVVFAGYGIT----------APELG-YDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARR 87 (151)
T ss_pred CceEeEEEecCCcC----------ccccc-hhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHH
Confidence 34567777765541 23454 4566678999999999886321 0 1 12789999999999
Q ss_pred CCceEEEEecccCccccc--cCCCCCCccEEEeChhhHHHHHHH
Q 009135 494 LSAAGIVFYMDPFVIGFQ--LNPTPMKMPGIIIPSPDDSKVQFL 535 (542)
Q Consensus 494 aGa~gvii~n~~~~~~~~--~~~~~~~iP~~~i~~~~g~~l~~~ 535 (542)
+||+||||||++...... ..+...--..++|+....+.++..
T Consensus 88 ~GA~aVIv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 88 HGAAAVIVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CCCeEEEEEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 999999999996542211 111000011778888888887764
No 66
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.22 E-value=8.9e-06 Score=72.58 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=64.2
Q ss_pred CCceeEEeeccccCCCccccCCcCcccCCCCCCCCccCccccEEEEeeccccccCcc------------------cHHHH
Q 009135 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS------------------TIKQA 487 (542)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~------------------~~~~k 487 (542)
....++|+.+.... ...|. ..++...+++|||||+.|+ .| ++..|
T Consensus 19 ~~~aelVfvGyGi~----------a~~~~-~dDYag~DVkGKIVlv~~g------~P~~~~~~~~~~~~~~~~~~~~~~K 81 (142)
T cd04814 19 IKDAPLVFVGYGIK----------APELS-WDDYAGLDVKGKVVVVLRN------DPQGEPGAGDFGGKAMTYYGRWTYK 81 (142)
T ss_pred ccceeeEEecCCcC----------CCCCC-hhhcCCCCCCCcEEEEEcC------CCCcccccccccccccccccCHHHH
Confidence 34567777765531 12454 3567778999999999984 44 58899
Q ss_pred HHHHHhCCceEEEEecccCccccc---cC-CCCCCccE-EEeChhhHHHHHHHh
Q 009135 488 FETAKNLSAAGIVFYMDPFVIGFQ---LN-PTPMKMPG-IIIPSPDDSKVQFLC 536 (542)
Q Consensus 488 ~~~a~~aGa~gvii~n~~~~~~~~---~~-~~~~~iP~-~~i~~~~g~~l~~~~ 536 (542)
.++|+++||+|||++|+....... .. .....+|. ..|+...+.+|++.-
T Consensus 82 ~~~A~~~GA~gvIii~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~a~~l~~~a 135 (142)
T cd04814 82 YEEAARHGAAGVLIVHELAPASYGWATWKNPAKVHPNLEAAIQRAVAVDLFEAS 135 (142)
T ss_pred HHHHHHCCCcEEEEEeCCCcccCChhhhhcccccCCceeeEecHHHHHHHHhhC
Confidence 999999999999999995432221 11 11223443 458888888888754
No 67
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.14 E-value=7.6e-06 Score=78.52 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=35.6
Q ss_pred ccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEeccc
Q 009135 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505 (542)
Q Consensus 461 ~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~ 505 (542)
..+++|||||+++ |.|.+.+|+++|+++||+|||||++.
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 4689999999998 77888899999999999999999984
No 68
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.08 E-value=1.5e-05 Score=70.67 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=49.3
Q ss_pred CCceeEEeeccccCCCccccCCcCcccCCCCCCCCccCccccEEEEeeccccccC------cccHHHHHHHHHhCCceEE
Q 009135 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLG------LSTIKQAFETAKNLSAAGI 499 (542)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g------~~~~~~k~~~a~~aGa~gv 499 (542)
....++|+.+.... ...|. ..++...+++|||||+.++.+...+ ..++.+|.++|+++||+||
T Consensus 21 ~v~gelVfvGyG~~----------~~~~~-~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 89 (137)
T cd04820 21 SVEAPLVFVGYGLV----------APELG-HDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGM 89 (137)
T ss_pred CceEeEEEecCCcC----------ccCcC-HhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEE
Confidence 44567777765541 13454 4566678999999999994211000 0147899999999999999
Q ss_pred EEecccCc
Q 009135 500 VFYMDPFV 507 (542)
Q Consensus 500 ii~n~~~~ 507 (542)
|+||++..
T Consensus 90 Ii~~d~~~ 97 (137)
T cd04820 90 ITLTTPRS 97 (137)
T ss_pred EEEeCCcc
Confidence 99998553
No 69
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.05 E-value=8.8e-06 Score=72.47 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=54.8
Q ss_pred cCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcccc-----------cc---C--------------
Q 009135 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF-----------QL---N-------------- 513 (542)
Q Consensus 462 ~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~-----------~~---~-------------- 513 (542)
-+++|||||+++ |......|++||+++||+|||||.++...+. .. +
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~~~~~GDP~TPG~PS~~~~~ 110 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVSLNPGGDPSTPGYPSADQSC 110 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEecCCCCCCCCCCCccccCcc
Confidence 579999999999 6678889999999999999999998532110 00 0
Q ss_pred ----CCCCCccEEEeChhhHHHHHHHhh
Q 009135 514 ----PTPMKMPGIIIPSPDDSKVQFLCL 537 (542)
Q Consensus 514 ----~~~~~iP~~~i~~~~g~~l~~~~~ 537 (542)
..-.+||+.-|+..|+..||....
T Consensus 111 R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 111 RQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred cCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 011469999999999999998764
No 70
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=98.02 E-value=8.6e-06 Score=84.05 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=61.8
Q ss_pred cCcccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcccccc-----CCCCCCccEE
Q 009135 448 MYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL-----NPTPMKMPGI 522 (542)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~~-----~~~~~~iP~~ 522 (542)
.+.+.|.. ....++||++++.| |.|+|.+|+++|+++||.+++|.||..+..+.. ...+..||++
T Consensus 82 ~pld~cs~----~~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~ 151 (541)
T KOG2442|consen 82 DPLDSCST----LQSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVA 151 (541)
T ss_pred CCccccCC----CCccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEE
Confidence 45566752 23578999999999 899999999999999999999999954322221 2345789999
Q ss_pred EeChhhHHHHHHH
Q 009135 523 IIPSPDDSKVQFL 535 (542)
Q Consensus 523 ~i~~~~g~~l~~~ 535 (542)
+|++++++.+...
T Consensus 152 mi~~~~~~~l~~~ 164 (541)
T KOG2442|consen 152 MISYSDGRDLNKS 164 (541)
T ss_pred EEEhhhHHHHHhh
Confidence 9999999999854
No 71
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=6.3e-05 Score=76.18 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=60.3
Q ss_pred cCcccCCCCCCCC--ccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCccccc-c--CCCCCCccEE
Q 009135 448 MYVGECQDSSNFN--QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ-L--NPTPMKMPGI 522 (542)
Q Consensus 448 ~~~~~c~~~~~~~--~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~~~~-~--~~~~~~iP~~ 522 (542)
.+..+|..-..+. ...-...++|+.| |.|+|++|+.||+++|.+|+|+|||....... + ...-..||++
T Consensus 60 ep~~aC~~i~~~p~~~~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~ 133 (348)
T KOG4628|consen 60 EPLNACNPITNFPEHSTRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIV 133 (348)
T ss_pred CCccccCccccCccCCCCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEE
Confidence 3445675322111 2344567899999 77999999999999999999999985543222 2 3344789999
Q ss_pred EeChhhHHHHHHHh
Q 009135 523 IIPSPDDSKVQFLC 536 (542)
Q Consensus 523 ~i~~~~g~~l~~~~ 536 (542)
+++...|+.|..+.
T Consensus 134 ~vs~~~ge~l~~~~ 147 (348)
T KOG4628|consen 134 FVSVFSGELLSSYA 147 (348)
T ss_pred EEeeehHHHHHHhh
Confidence 99999998888754
No 72
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00026 Score=75.13 Aligned_cols=181 Identities=21% Similarity=0.277 Sum_probs=111.2
Q ss_pred cchhcccCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecccccccc
Q 009135 173 QGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITR 252 (542)
Q Consensus 173 ~~~w~~~~~~~~~G~Gv~VaViDtGvd~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~ 252 (542)
+..|.. +++|+++.|+|+|+|+...||++... +.+...| ++....
T Consensus 23 ~~~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~-----~~~~~s~-----------------------d~~~~~--- 67 (431)
T KOG3525|consen 23 QNAWCK----GYTGTRVSVTILDDGLECSHPDLRNN-----YDPLGSY-----------------------DVNRHD--- 67 (431)
T ss_pred eecccc----CCCCCceEEEEeeccccccCcccccc-----cCcceeE-----------------------eeecCC---
Confidence 456776 89999999999999999999999865 2222222 111110
Q ss_pred CccCCCCCCCCCCCCCCChhhhhhhhhccCCCCcccccccCCCcccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhh-
Q 009135 253 GIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ- 331 (542)
Q Consensus 253 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~- 331 (542)
+......+....+.|||-|++-.+...++.. =..|+++++++..++++...- ++...+......
T Consensus 68 ---~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~~v----~~~~~~~~~~~~~ 132 (431)
T KOG3525|consen 68 ---NDPEPRCDGTNENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAGCV----SDAVEAPSLGFGP 132 (431)
T ss_pred ---CCcccccCCCCccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeeeec----ccceecccccCCC
Confidence 0111112223458899999999988863332 257999999999999887531 122222222222
Q ss_pred CCCcEEEeccCCCCCCCCCCCcchHHHHHHHHHH-----hCCcEEEEecCCCCCCCCCCC--CC--CCcEEEEeccccCC
Q 009135 332 DGVDIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPKSMS--SF--SPWIFTVGAASHDR 402 (542)
Q Consensus 332 ~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~GilvV~AAGN~G~~~~~~~--~~--~p~vitVgA~~~~~ 402 (542)
.-+++-..|||........+.-......++..+. .+|-+.|+|.||.|......+ .+ +.+.++.+..+..+
T Consensus 133 ~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~ 212 (431)
T KOG3525|consen 133 CHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQCG 212 (431)
T ss_pred CCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccccC
Confidence 3478999999975543222222334445554443 367899999999987544332 22 34555556655554
Q ss_pred c
Q 009135 403 I 403 (542)
Q Consensus 403 ~ 403 (542)
.
T Consensus 213 ~ 213 (431)
T KOG3525|consen 213 K 213 (431)
T ss_pred C
Confidence 4
No 73
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.47 E-value=7.7e-05 Score=65.79 Aligned_cols=78 Identities=10% Similarity=0.148 Sum_probs=59.2
Q ss_pred CcCcccCCCCCCCCccCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccCcc-cc----ccCC----CCC
Q 009135 447 DMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GF----QLNP----TPM 517 (542)
Q Consensus 447 ~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~~~-~~----~~~~----~~~ 517 (542)
..++.+|+. -.+.-.+.|.|+|++| |+|+|-.|..|++++||.++||-.++... .+ .|.. ...
T Consensus 71 adPp~aC~e--lrN~~f~~d~vaL~eR------GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~A 142 (193)
T KOG3920|consen 71 ADPPHACEE--LRNEIFAPDSVALMER------GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRA 142 (193)
T ss_pred cCChhHHHH--HhhcccCCCcEEEEec------CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccccccc
Confidence 457789973 3456678999999999 89999999999999999999998774331 11 1222 346
Q ss_pred CccEEEeChhhHHHH
Q 009135 518 KMPGIIIPSPDDSKV 532 (542)
Q Consensus 518 ~iP~~~i~~~~g~~l 532 (542)
.||++++.-.+|-.+
T Consensus 143 niPa~fllg~~Gy~i 157 (193)
T KOG3920|consen 143 NIPAVFLLGVTGYYI 157 (193)
T ss_pred CCceEEEeccceEEE
Confidence 899999988877443
No 74
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0065 Score=70.16 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=61.6
Q ss_pred cccccCCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCC-cEEEeccCCCCC-CCCCCCcchHHHHHHHHHHhCCcEEEE
Q 009135 296 ASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-DIISLSITPNRR-PPGIATFFNPIDMALLSAAKAGIFVVQ 373 (542)
Q Consensus 296 ~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-~VIN~S~G~~~~-~~~~~~~~~~~~~a~~~a~~~GilvV~ 373 (542)
..-+||.|+|..+-.-. ........++.+...+=. -+|-.||+.... ......+.+.++.....+..+||.+++
T Consensus 288 s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 46789999999876522 222233333333222111 233356664211 011122456778888889999999999
Q ss_pred ecCCCCCCCC--------CCCCCCCcEEEEec
Q 009135 374 AAGNTGPSPK--------SMSSFSPWIFTVGA 397 (542)
Q Consensus 374 AAGN~G~~~~--------~~~~~~p~vitVgA 397 (542)
|+|.+|.... ..|+.+|+|.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999987653 34677899999998
No 75
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.78 E-value=0.012 Score=53.70 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=59.0
Q ss_pred CceeEEeeccccCCCccccCCcCcccCCCCCCCCccCccccEEEEeecccccc-------Cc------ccHHHHHHHHHh
Q 009135 427 KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVL-------GL------STIKQAFETAKN 493 (542)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~-------g~------~~~~~k~~~a~~ 493 (542)
...++|+.+.+... ++.- -.++...|++||||++.++.+... +. .+...|.++|++
T Consensus 22 ~~~elVFvGyGi~a---------pe~~--~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~ 90 (157)
T cd04821 22 KDSPLVFVGYGIVA---------PEYG--WDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAAR 90 (157)
T ss_pred ccCCEEEeccCccC---------cccC--cccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHH
Confidence 45677776665421 1111 135667899999999997643111 00 133469999999
Q ss_pred CCceEEEEecccCcc--ccc------------cC-C--CCCCccE-EEeChhhHHHHHHHhh
Q 009135 494 LSAAGIVFYMDPFVI--GFQ------------LN-P--TPMKMPG-IIIPSPDDSKVQFLCL 537 (542)
Q Consensus 494 aGa~gvii~n~~~~~--~~~------------~~-~--~~~~iP~-~~i~~~~g~~l~~~~~ 537 (542)
+||+|||+.++.... ... .. . ....++. ..|+...+.+|++.-.
T Consensus 91 ~GA~gvi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~A~~lf~~ag 152 (157)
T cd04821 91 QGAAGALIVHETEPASYGWSVVQSSWTGEQFDLVRANPGAPRVKVEGWIQRDAAVKLFALAG 152 (157)
T ss_pred CCCeEEEEEeCCCcccCChhhhccccCCCceEeecccccCCCceEEEEECHHHHHHHHHhcC
Confidence 999999999774321 110 00 0 1122333 3588888888887543
No 76
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=69.06 E-value=5 Score=45.39 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=34.1
Q ss_pred cCccccEEEEeeccccccCcccHHHHHHHHHhCCceEEEEecccC
Q 009135 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (542)
Q Consensus 462 ~~~~Gkivl~~r~~~~~~g~~~~~~k~~~a~~aGa~gvii~n~~~ 506 (542)
-+++|||+|++. |.....+|++||.++||.|||+|.+..
T Consensus 181 i~~~g~i~l~r~------~~i~~g~~~~na~~~~a~gviiy~d~~ 219 (702)
T KOG2195|consen 181 INLSGKIVLARV------GKIYRGKKVKNAEAAGADGVIIYTDPY 219 (702)
T ss_pred ccccCceEEEEc------cccchhhhHhhHHHhhcCcEEEeeccc
Confidence 358899999988 667788999999999999999999754
No 77
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=55.86 E-value=4.3 Score=43.86 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=26.3
Q ss_pred CCCCCCCCCcEEEEeccccCC-cccceeEeCCC
Q 009135 382 PKSMSSFSPWIFTVGAASHDR-IYTNSIILGNS 413 (542)
Q Consensus 382 ~~~~~~~~p~vitVgA~~~~~-~~~~~s~~G~~ 413 (542)
..+.|+.++++|+|||++.+. ..+.||++|+.
T Consensus 336 tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~ 368 (455)
T cd07478 336 TLTIPGTARSVITVGAYNQNNNSIAIFSGRGPT 368 (455)
T ss_pred eEecCCCCCCcEEEEEEeCCCCcccCccCCCcC
Confidence 456788889999999998765 48889999876
No 78
>PLN03207 stomagen; Provisional
Probab=54.97 E-value=14 Score=30.43 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=20.5
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHhhhhhcc
Q 009135 1 MGSSCRSCRWLRLFVVVLLLGFLVCTSFCRA 31 (542)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 31 (542)
|.-.|+........+++||+++++...+++.
T Consensus 1 man~~~~~tt~~~~lffLl~~llla~~v~qg 31 (113)
T PLN03207 1 MANECMTATTRCLTLFFLLFFLLLGAYVIQG 31 (113)
T ss_pred CccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence 5666776665555666666666677767776
No 79
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.92 E-value=49 Score=27.46 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 009135 10 WLRLFVVVLLLGFLV 24 (542)
Q Consensus 10 ~~~~~~~~~~l~~l~ 24 (542)
++++.++|.+|+|+.
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 80
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=28.84 E-value=1.5e+02 Score=30.83 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=47.4
Q ss_pred cCccccEEEEeeccccccCcc-cHHHHHHHHHhCCceEEEEecccCc-------cccccCCCCCCccEEEeChhhHHHHH
Q 009135 462 DLVQGNLLICSYSIRFVLGLS-TIKQAFETAKNLSAAGIVFYMDPFV-------IGFQLNPTPMKMPGIIIPSPDDSKVQ 533 (542)
Q Consensus 462 ~~~~Gkivl~~r~~~~~~g~~-~~~~k~~~a~~aGa~gvii~n~~~~-------~~~~~~~~~~~iP~~~i~~~~g~~l~ 533 (542)
.|..|.+++..+. +.. .....+-.|..+||-|+||--.++. -++-....+.+||++.++-.++..+-
T Consensus 86 gD~~Gr~~Va~~p-----q~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 86 GDAGGRVVVARAP-----QVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred CCCCCeEEeeecc-----ccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccccCCCCCCCcceEEeccCcchhhc
Confidence 4788999887774 332 3344455788999999999776543 12233456789999999888877654
Q ss_pred H
Q 009135 534 F 534 (542)
Q Consensus 534 ~ 534 (542)
.
T Consensus 161 ~ 161 (486)
T COG4882 161 E 161 (486)
T ss_pred c
Confidence 3
No 81
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=1.4e+02 Score=30.41 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHHHHHHhhCCCcEEEeccCCCCCCCCC--------CCcchHHHHHHHHHHh-----CCcEEEEecCC
Q 009135 323 VAAIDQAAQDGVDIISLSITPNRRPPGI--------ATFFNPIDMALLSAAK-----AGIFVVQAAGN 377 (542)
Q Consensus 323 ~~ai~~a~~~g~~VIN~S~G~~~~~~~~--------~~~~~~~~~a~~~a~~-----~GilvV~AAGN 377 (542)
+.-+++|+++|.+||+ |-|....+... ....+++.+.+++-.+ .||.||+|+--
T Consensus 180 VdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 180 VDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEK 246 (430)
T ss_pred hHHHHHHHHcCCceEe-ccCccccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCceEEecCC
Confidence 5677899999999997 44543221110 2335678777754332 47899999654
No 82
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.71 E-value=4.2e+02 Score=22.42 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=45.4
Q ss_pred ccccc-CCCeEEEEEeccCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC-CCCcchHHHHHHHHHHhCCcEEEE
Q 009135 296 ASGMA-PRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPG-IATFFNPIDMALLSAAKAGIFVVQ 373 (542)
Q Consensus 296 ~~GvA-P~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~-~~~~~~~~~~a~~~a~~~GilvV~ 373 (542)
+.... ++++|+.+--+. ++....++.-+++..+.|+++|-+|-........ .=...+.+...++... |+-||.
T Consensus 30 F~~y~~~~~elvgf~~Cg---GCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 30 FARYDDEDVELVGFFTCG---GCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred cccCCCCCeEEEEEeeCC---CCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh--CCCEee
Confidence 44554 468888864333 5667788888888899999999998775432211 0012344444444333 887774
No 83
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=22.09 E-value=1.4e+02 Score=23.48 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=17.7
Q ss_pred cHHHHHHHHHhCCceEEEEec
Q 009135 483 TIKQAFETAKNLSAAGIVFYM 503 (542)
Q Consensus 483 ~~~~k~~~a~~aGa~gvii~n 503 (542)
.+.+.+...+++||.+++++.
T Consensus 51 ~~~~~~~~Lk~~GA~~Ilv~p 71 (75)
T PF08029_consen 51 QVWDLMDKLKAAGASDILVLP 71 (75)
T ss_dssp CHHHHHHHHHCTT-EEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEe
Confidence 577888999999999999985
No 84
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=20.62 E-value=2.7e+02 Score=23.90 Aligned_cols=29 Identities=3% Similarity=-0.158 Sum_probs=14.5
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHhcCCC
Q 009135 89 NVSISHPRSGYNISRVHDSILRRAFKGEK 117 (542)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (542)
++..+.+.+..+....-++.|+.......
T Consensus 55 lte~q~~~~~~rF~~~L~~~L~~yq~~H~ 83 (112)
T TIGR02744 55 LSEAQQKALLGRFNALLEAELQAWQAQHH 83 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444455555555555555665543333
No 85
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=20.21 E-value=2.6e+02 Score=28.63 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=31.7
Q ss_pred HHHHhhCCCc-EEEeccCCCCCCCCCCCcchHHHHHHHHHHhCCcEEEEec
Q 009135 326 IDQAAQDGVD-IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAA 375 (542)
Q Consensus 326 i~~a~~~g~~-VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AA 375 (542)
++.+++.|++ ||-..+|.+.-+ ..+..+++++.++||.||+++
T Consensus 226 l~~~~~~g~~GiVl~~~G~Gn~p-------~~~~~~l~~a~~~gi~VV~~S 269 (323)
T cd00411 226 VRAFLRAGYKGIVLAGYGAGNVP-------TDLIDELEEAAERGVVVVNST 269 (323)
T ss_pred HHHHHhCCCCEEEEEeECCCCCC-------HHHHHHHHHHHHCCCEEEEec
Confidence 3445677876 677789976543 357788889999999999874
Done!