Query 009136
Match_columns 542
No_of_seqs 237 out of 3139
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 20:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0472 Leucine-rich repeat pr 100.0 1.7E-54 3.7E-59 385.0 -4.4 532 1-538 1-545 (565)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-45 3.9E-50 402.4 30.6 502 10-537 70-589 (968)
3 PLN00113 leucine-rich repeat r 100.0 2.2E-44 4.9E-49 393.8 32.0 484 44-541 68-569 (968)
4 KOG0472 Leucine-rich repeat pr 100.0 2.2E-42 4.8E-47 308.0 -16.8 453 7-510 66-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.5E-37 3.3E-42 289.7 8.7 356 46-460 79-448 (873)
6 KOG4194 Membrane glycoprotein 100.0 1.8E-37 3.9E-42 289.2 6.3 378 47-527 54-446 (873)
7 KOG0618 Serine/threonine phosp 100.0 4.7E-37 1E-41 301.2 -0.5 477 13-531 2-487 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 6.5E-34 1.4E-38 267.7 0.8 358 11-440 9-375 (1255)
9 KOG0618 Serine/threonine phosp 100.0 3.6E-34 7.8E-39 281.1 -4.7 460 11-530 23-510 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 1.9E-33 4.2E-38 264.6 -1.9 363 44-466 6-377 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.4E-22 5.3E-27 220.4 24.1 300 46-413 590-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3E-26 214.5 24.5 176 131-312 552-739 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.4E-25 1.4E-29 196.4 -3.4 381 12-461 49-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1.9E-21 4.1E-26 198.0 17.5 257 11-312 203-459 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 2.6E-21 5.7E-26 196.9 18.1 264 69-423 202-465 (788)
16 KOG4237 Extracellular matrix p 99.9 3.3E-24 7.1E-29 191.9 -4.1 388 44-482 43-495 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.6E-20 1E-24 189.2 13.8 245 11-311 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.7E-20 1.5E-24 188.0 14.9 228 68-315 178-405 (754)
19 KOG0617 Ras suppressor protein 99.7 5.4E-19 1.2E-23 140.4 -3.7 162 42-204 30-193 (264)
20 KOG0617 Ras suppressor protein 99.7 1.7E-18 3.6E-23 137.6 -1.3 165 376-542 29-195 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 1.9E-16 4.2E-21 151.6 8.3 224 44-267 22-292 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 5.4E-16 1.2E-20 148.5 6.9 253 3-264 17-318 (319)
23 KOG1909 Ran GTPase-activating 99.4 3.5E-14 7.5E-19 126.4 0.6 222 44-265 29-310 (382)
24 KOG0532 Leucine-rich repeat (L 99.4 3E-14 6.4E-19 134.6 -3.4 208 2-223 43-250 (722)
25 KOG1909 Ran GTPase-activating 99.3 1.4E-13 3.1E-18 122.6 -0.5 231 4-243 25-311 (382)
26 COG4886 Leucine-rich repeat (L 99.3 4.1E-12 9E-17 125.1 6.7 179 44-224 115-294 (394)
27 COG4886 Leucine-rich repeat (L 99.3 5.9E-12 1.3E-16 124.0 7.7 195 72-268 97-292 (394)
28 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.5E-18 130.7 -4.9 212 119-332 55-268 (722)
29 PF14580 LRR_9: Leucine-rich r 99.2 7.1E-12 1.5E-16 105.0 4.8 121 44-166 18-146 (175)
30 KOG1259 Nischarin, modulator o 99.2 7.4E-12 1.6E-16 109.3 3.3 227 86-314 177-415 (490)
31 KOG3207 Beta-tubulin folding c 99.2 5.3E-12 1.2E-16 115.9 2.4 200 44-243 120-339 (505)
32 KOG1259 Nischarin, modulator o 99.2 3.1E-12 6.6E-17 111.7 0.7 133 133-268 280-414 (490)
33 KOG3207 Beta-tubulin folding c 99.2 4.6E-12 9.9E-17 116.3 0.8 203 64-266 117-339 (505)
34 PF14580 LRR_9: Leucine-rich r 99.2 4E-11 8.8E-16 100.5 5.7 107 357-464 19-126 (175)
35 KOG4658 Apoptotic ATPase [Sign 99.0 3.2E-10 6.9E-15 119.3 5.9 105 44-148 544-653 (889)
36 KOG0531 Protein phosphatase 1, 99.0 8.6E-11 1.9E-15 115.7 -0.7 217 44-266 71-290 (414)
37 KOG0531 Protein phosphatase 1, 98.9 1.4E-10 3E-15 114.3 -0.5 263 45-312 49-319 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 6.6E-10 1.4E-14 76.5 3.0 60 403-462 1-60 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.9 3.3E-09 7.2E-14 111.7 6.8 126 115-241 524-653 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 2.4E-09 5.3E-14 73.6 2.9 60 380-439 1-61 (61)
41 KOG1859 Leucine-rich repeat pr 98.7 3.3E-10 7.2E-15 110.7 -7.1 172 44-220 108-292 (1096)
42 COG5238 RNA1 Ran GTPase-activa 98.6 8.4E-08 1.8E-12 83.2 5.7 135 86-220 87-255 (388)
43 PF12799 LRR_4: Leucine Rich r 98.5 7.6E-08 1.6E-12 60.3 2.7 41 497-537 1-41 (44)
44 KOG2120 SCF ubiquitin ligase, 98.4 1.2E-08 2.6E-13 89.5 -3.0 196 46-241 160-374 (419)
45 PLN03150 hypothetical protein; 98.4 8.8E-07 1.9E-11 91.6 9.3 89 382-470 420-509 (623)
46 PLN03150 hypothetical protein; 98.4 9.4E-07 2E-11 91.4 9.0 106 404-531 419-526 (623)
47 KOG4579 Leucine-rich repeat (L 98.4 2.3E-08 5E-13 77.3 -2.1 108 46-153 28-139 (177)
48 PRK15386 type III secretion pr 98.4 2.5E-06 5.4E-11 80.9 10.8 88 357-460 52-141 (426)
49 KOG2982 Uncharacterized conser 98.4 1.1E-07 2.3E-12 83.7 1.4 213 49-261 49-287 (418)
50 KOG4341 F-box protein containi 98.4 1.9E-08 4.1E-13 92.5 -3.5 132 400-531 291-437 (483)
51 KOG2120 SCF ubiquitin ligase, 98.4 8.5E-08 1.8E-12 84.3 0.5 172 10-196 186-375 (419)
52 KOG1859 Leucine-rich repeat pr 98.4 5E-09 1.1E-13 102.7 -7.9 127 137-266 164-292 (1096)
53 KOG2982 Uncharacterized conser 98.3 2.2E-07 4.9E-12 81.7 1.9 199 68-266 45-262 (418)
54 COG5238 RNA1 Ran GTPase-activa 98.3 6E-07 1.3E-11 78.0 3.9 41 110-150 88-133 (388)
55 KOG4579 Leucine-rich repeat (L 98.3 7.7E-08 1.7E-12 74.5 -1.4 111 68-178 27-141 (177)
56 PF13306 LRR_5: Leucine rich r 98.2 9.2E-07 2E-11 71.9 2.8 59 399-459 8-66 (129)
57 KOG4341 F-box protein containi 98.2 1.2E-07 2.6E-12 87.3 -3.3 264 46-309 139-437 (483)
58 KOG1644 U2-associated snRNP A' 98.1 4.6E-06 1E-10 69.5 5.7 121 47-168 21-148 (233)
59 PF12799 LRR_4: Leucine Rich r 98.1 4.4E-06 9.5E-11 52.3 4.3 38 46-83 2-39 (44)
60 PF13306 LRR_5: Leucine rich r 98.1 2.2E-06 4.7E-11 69.6 3.4 101 375-480 7-108 (129)
61 KOG3665 ZYG-1-like serine/thre 98.0 3.1E-06 6.7E-11 87.3 3.7 128 45-173 122-263 (699)
62 KOG1644 U2-associated snRNP A' 98.0 8.9E-06 1.9E-10 67.8 5.3 106 360-466 22-128 (233)
63 KOG3665 ZYG-1-like serine/thre 98.0 6.7E-06 1.5E-10 84.9 5.7 131 7-150 120-263 (699)
64 PRK15386 type III secretion pr 98.0 7.3E-05 1.6E-09 71.1 11.1 73 64-147 48-122 (426)
65 KOG2123 Uncharacterized conser 97.6 9.8E-06 2.1E-10 71.0 -1.4 77 402-482 18-95 (388)
66 KOG2123 Uncharacterized conser 97.4 9.9E-06 2.1E-10 70.9 -3.3 87 379-468 18-105 (388)
67 KOG2739 Leucine-rich acidic nu 97.3 5.8E-05 1.2E-09 66.0 0.5 85 65-150 40-129 (260)
68 KOG2739 Leucine-rich acidic nu 97.1 0.00011 2.3E-09 64.3 -0.6 105 376-482 39-150 (260)
69 PF00560 LRR_1: Leucine Rich R 96.8 0.00037 8.1E-09 36.1 0.5 21 521-541 1-21 (22)
70 KOG1947 Leucine rich repeat pr 96.8 0.00034 7.4E-09 71.2 0.6 171 4-195 183-373 (482)
71 KOG1947 Leucine rich repeat pr 96.4 0.00077 1.7E-08 68.6 0.0 144 379-531 268-438 (482)
72 PF13504 LRR_7: Leucine rich r 96.4 0.0018 3.9E-08 30.9 1.2 17 520-536 1-17 (17)
73 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.3E-08 33.3 1.0 22 498-519 1-22 (22)
74 smart00369 LRR_TYP Leucine-ric 96.1 0.0043 9.4E-08 33.6 1.9 23 519-541 1-23 (26)
75 smart00370 LRR Leucine-rich re 96.1 0.0043 9.4E-08 33.6 1.9 23 519-541 1-23 (26)
76 KOG4308 LRR-containing protein 95.8 0.00013 2.7E-09 72.3 -8.9 179 11-198 89-304 (478)
77 PF13504 LRR_7: Leucine rich r 95.5 0.0087 1.9E-07 28.6 1.2 17 497-513 1-17 (17)
78 KOG4308 LRR-containing protein 95.1 0.00039 8.5E-09 68.9 -8.1 174 47-220 89-303 (478)
79 KOG3864 Uncharacterized conser 94.1 0.01 2.2E-07 50.1 -0.9 79 404-482 102-183 (221)
80 KOG0473 Leucine-rich repeat pr 94.0 0.0014 3E-08 56.4 -6.2 79 93-171 44-122 (326)
81 KOG0473 Leucine-rich repeat pr 93.2 0.0028 6.1E-08 54.5 -5.6 93 58-150 31-124 (326)
82 KOG3864 Uncharacterized conser 93.0 0.018 3.9E-07 48.7 -1.1 81 380-460 101-185 (221)
83 smart00364 LRR_BAC Leucine-ric 92.6 0.084 1.8E-06 28.2 1.4 18 520-537 2-19 (26)
84 smart00370 LRR Leucine-rich re 91.9 0.18 3.8E-06 27.2 2.3 19 404-422 3-21 (26)
85 smart00369 LRR_TYP Leucine-ric 91.9 0.18 3.8E-06 27.2 2.3 19 404-422 3-21 (26)
86 PF13516 LRR_6: Leucine Rich r 89.1 0.077 1.7E-06 28.0 -0.7 16 403-418 2-17 (24)
87 smart00365 LRR_SD22 Leucine-ri 85.1 0.82 1.8E-05 24.6 1.9 16 520-535 2-17 (26)
88 smart00367 LRR_CC Leucine-rich 80.6 0.87 1.9E-05 24.4 0.9 17 402-418 1-18 (26)
89 smart00368 LRR_RI Leucine rich 75.9 1.7 3.6E-05 23.9 1.1 18 403-420 2-19 (28)
90 KOG3763 mRNA export factor TAP 72.0 1.5 3.2E-05 43.5 0.6 63 379-441 217-284 (585)
91 KOG3763 mRNA export factor TAP 48.0 9 0.0002 38.3 1.2 63 227-289 215-284 (585)
92 KOG4242 Predicted myosin-I-bin 39.7 1.3E+02 0.0028 30.0 7.3 220 46-266 215-481 (553)
93 KOG4242 Predicted myosin-I-bin 30.3 1.5E+02 0.0032 29.6 6.1 38 382-419 415-456 (553)
94 PF01462 LRRNT: Leucine rich r 25.6 44 0.00094 18.3 1.1 17 12-28 11-27 (28)
95 TIGR00864 PCC polycystin catio 25.3 53 0.0011 40.3 2.7 31 386-416 1-32 (2740)
No 1
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-54 Score=385.04 Aligned_cols=532 Identities=45% Similarity=0.681 Sum_probs=471.0
Q ss_pred ChHHHHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCC
Q 009136 1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL 80 (542)
Q Consensus 1 ~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 80 (542)
++++++++|+-..+++|++.+.++|..+.+..-...+++.||+...+..+.+++|.++.+..++.++..|.+|++.++++
T Consensus 1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l 80 (565)
T KOG0472|consen 1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL 80 (565)
T ss_pred CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence 46889999999999999999999999999998888999999999999999999999999989999999999999999999
Q ss_pred CcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCC
Q 009136 81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160 (542)
Q Consensus 81 ~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~ 160 (542)
.++|+++..+.+++.++.++|++..+|+.++.+.++.++++++|.+..++..++.+..+..++-.+|++..+|.+++.+.
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (542)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 240 (542)
++..+++.+|.+...++..+. +++|++++...|.++.+|..++.+.+|..|.+..|++..+| .|.+|..|.+++++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence 999999999999999888666 99999999999999999999999999999999999999998 7999999999999999
Q ss_pred cCcccchhcc-CCCCccEEEcCCCcCcccchhhhccc-ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccccccccc
Q 009136 241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (542)
Q Consensus 241 ~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 318 (542)
.+..+|+... .++++..||+..|+++..|...+..+ ++.+|+++|.++.+|..++++ +|+.+.+.||.+.+++..+.
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 9999987765 88999999999999999999999888 999999999999999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchhhhhh------hhhcccccccEEEecCCCCCCCCccccccCC---ccEEECCC
Q 009136 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLIT------MATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR 389 (542)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~ 389 (542)
..+....+++++.++............+...+ .......+.+.++.++-+++.+|...|.... ++..+++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 99999999999986554433222111111111 1112224567889999999999998887654 89999999
Q ss_pred CcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCC
Q 009136 390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (542)
Q Consensus 390 ~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 469 (542)
|.+..+|..+..+..+.+.-+..++..++.+..+.++++|+.|++++|.+.+++.+ +..+..|+.++++.|++... |.
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P~ 475 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-PE 475 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-hH
Confidence 99999998887777665544445555666777789999999999999999999887 66677899999999988754 45
Q ss_pred CCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCCCC
Q 009136 470 PFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538 (542)
Q Consensus 470 ~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~~ 538 (542)
+......++.+.. .+++.+++.. +.++..|+.||+.+|+++++|..+++|++|+.|.++||+++ .|++
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 5555555555555 5888888665 99999999999999999999999999999999999999999 6654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-45 Score=402.38 Aligned_cols=502 Identities=28% Similarity=0.335 Sum_probs=311.3
Q ss_pred hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhh-cCCCCCcEEEcCCCCCCc-chHh
Q 009136 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSHNKLSE-LPAA 86 (542)
Q Consensus 10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l-~~~~~L~~L~l~~~~~~~-l~~~ 86 (542)
.++.||++++.+.......+.. +++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.. +|.
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~------------l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~- 136 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFR------------LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR- 136 (968)
T ss_pred cEEEEEecCCCccccCChHHhC------------CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-
Confidence 3556666666655333222222 556666666666654 455433 366666666666666542 222
Q ss_pred hhCCCCCcEEecCCCccc-cCCccccccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCccc-cCCcccccCCCcc
Q 009136 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS 163 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~ 163 (542)
..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|+
T Consensus 137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 34556666666666655 45555666666666666666554 45555666666666666666554 3455566666666
Q ss_pred EEEccCCcccccchhhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCc
Q 009136 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA 241 (542)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~ 241 (542)
+|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 6666666655444444566666666666666553 35555666666666666666554 345555566666666666666
Q ss_pred Cc-ccchhccCCCCccEEEcCCCcCcccch-hhh-cccccEEEccCCCCCC-CChhhcCcCCCcEEEcCCCccccccccc
Q 009136 242 LS-ALPAELGKLSKLGTLDLHSNQLKEYCV-EAC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL 317 (542)
Q Consensus 242 ~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~-~~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 317 (542)
+. .+|..+..+++|+.|++++|.+..... ... ..+|+.+++++|.+.+ +|..+..+++|+.+++++|.+.......
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 55 445555666666666666665543222 111 1236666666665553 4555566666666666666553221110
Q ss_pred cCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCCccccccCCccEEECCCCcccc-c
Q 009136 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-L 395 (542)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l 395 (542)
+... ..+......... ............++++.+++.+|.+. .+|..+..++.|+.|++++|.++. +
T Consensus 376 ~~~~---------~~L~~L~l~~n~--l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 376 LCSS---------GNLFKLILFSNS--LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred HhCc---------CCCCEEECcCCE--ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence 0000 000000000000 00000011122457788888888776 566677778888888888888765 4
Q ss_pred ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCc
Q 009136 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475 (542)
Q Consensus 396 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 475 (542)
+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|++.......+.++++|+.|++++|.+....+..+..++
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 5556778888888888888776544433 457888888888888876666688888899999999988888888888888
Q ss_pred hhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCCccc-ccCccccCCCCCCEEECCCCcCC-cCCC
Q 009136 476 HLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPP 537 (542)
Q Consensus 476 ~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~-~lp~ 537 (542)
+|++|++ .+.+. .+|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|+
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999888 55554 67788888899999999999887 56888888999999999999887 4664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-44 Score=393.76 Aligned_cols=484 Identities=28% Similarity=0.365 Sum_probs=395.5
Q ss_pred ecCCcEEEcCCCccc-chhHhhcCCCCCcEEEcCCCCCC-cchHhh-hCCCCCcEEecCCCccc-cCCccccccCCccEE
Q 009136 44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKF 119 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L 119 (542)
..+++.|+++++.+. .++.++..+++|+.|++++|.+. .+|..+ ..+.+|++|++++|.++ .+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999887 56788999999999999999987 677754 59999999999999887 4453 568999999
Q ss_pred EcCCCcCC-cCCccccCCCCCCeEEccCCccc-cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccC
Q 009136 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (542)
Q Consensus 120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (542)
++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999987 67888999999999999999886 67888999999999999999988766667999999999999999986
Q ss_pred -ccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCccc-chhhh
Q 009136 198 -GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY-CVEAC 273 (542)
Q Consensus 198 -~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~ 273 (542)
.+|..+..+++|+.|++.+|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+... +....
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 68888999999999999999887 57888999999999999999987 6788899999999999999988754 33332
Q ss_pred c-ccccEEEccCCCCCC-CChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhh
Q 009136 274 Q-LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (542)
Q Consensus 274 ~-~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (542)
. ..|+.+++++|.+.+ +|..+..+++|+.+++++|.+.......+. .. ..+............ ....
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--------~~-~~L~~L~Ls~n~l~~--~~p~ 374 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--------KH-NNLTVLDLSTNNLTG--EIPE 374 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh--------CC-CCCcEEECCCCeeEe--eCCh
Confidence 2 359999999998876 677788999999999999987632211110 00 001111110000000 0001
Q ss_pred hhcccccccEEEecCCCCC-CCCccccccCCccEEECCCCcccc-cChhcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (542)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L 429 (542)
.......++.+++.++.+. .+|..+..+++|+.|++.+|.++. +|..+..+++|+.|++++|.+++.....+..+++|
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 1112356888999988876 677778889999999999998874 77788999999999999999998777777889999
Q ss_pred cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCC
Q 009136 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQN 507 (542)
Q Consensus 430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~ 507 (542)
+.|++++|++....+..+ ..++|+.|++++|++....+..+.++++|+.|++ .+.+. .+|..+.++++|+.|++++|
T Consensus 455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533 (968)
T ss_pred cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence 999999999876544433 4689999999999999888888999999999999 66665 78889999999999999999
Q ss_pred cccc-cCccccCCCCCCEEECCCCcCC-cCCCCCCC
Q 009136 508 SLQS-IPEGFKNLTSLTELDLSDNNIS-ALPPELVS 541 (542)
Q Consensus 508 ~l~~-l~~~l~~~~~L~~L~l~~~~l~-~lp~~~~~ 541 (542)
.++. +|..+..+++|+.|++++|+++ .+|+.+..
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred cccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence 9884 5888999999999999999998 68876543
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-42 Score=307.95 Aligned_cols=453 Identities=28% Similarity=0.403 Sum_probs=341.8
Q ss_pred HHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHh
Q 009136 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (542)
Q Consensus 7 ~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~ 86 (542)
....+++++++.+++.++|..+.+ ...++.++.+++.+.++|+.+..+..|+.++++.+.+..+++.
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~ 132 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS 132 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch
Confidence 334456677777777777777766 5667777777777777777777777777788777777777777
Q ss_pred hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEE
Q 009136 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 166 (542)
+..+..|..++..+|.++++|+.+.++.++..+++.+|.+..+|...-.++.|++||...|.+..+|..++.+.+|+.|+
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY 212 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence 77777777777777777778777777778888888887777777666667788888888888888888888888888888
Q ss_pred ccCCcccccchhhhhccccCcEEEcCCcccCccccc-cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCccc
Q 009136 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (542)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 245 (542)
+..|++..++. |.+|..|+++.++.|.++-+|.. .+.+.++..|++.+|+++++|..+..+.+|+.+++++|.++.+
T Consensus 213 L~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 213 LRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred hhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC
Confidence 88888877763 77888888888888888777754 4577888888888888888887777788888888888888888
Q ss_pred chhccCCCCccEEEcCCCcCcccchhhhccc----ccEEEc--cCCCCCC--------------CChhhcCcCCCcEEEc
Q 009136 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL--SNNSLSG--------------LPPEIGKMTTLRKLLL 305 (542)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~----L~~l~l--~~~~l~~--------------l~~~l~~~~~L~~L~l 305 (542)
|..++++ .|+.|.+.||.+.++........ ++++.- .+..++. .......+.+.+.|++
T Consensus 291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~ 369 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV 369 (565)
T ss_pred Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence 8888887 88888888887776555443322 332211 1000000 0111223445566666
Q ss_pred CCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCC-ccE
Q 009136 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE-ITK 384 (542)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-L~~ 384 (542)
++-+++.++..+|..... .-...++++++.+.++|..+..... .+.
T Consensus 370 s~~qlt~VPdEVfea~~~---------------------------------~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 370 SDKQLTLVPDEVFEAAKS---------------------------------EIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred cccccccCCHHHHHHhhh---------------------------------cceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 666665555544433211 2357789999999999988877654 456
Q ss_pred EECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCC
Q 009136 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (542)
Q Consensus 385 L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 464 (542)
+.++++.+..+|..+..+++|+.|++++|-+.+++.+. +++..|+.|+++.|++..++.. +.....|+.+-.++|++.
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQIG 494 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchHH-HhhHHHHHHHHhcccccc
Confidence 67777778888888899999999999999999998874 7888899999999998877643 455567778878889999
Q ss_pred CCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCccc
Q 009136 465 LPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 465 ~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 510 (542)
.+.+..+.+|.+|.+|++ .+.+..+|.+++++++|++|++.||++.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 988888999999999999 8889999999999999999999999987
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-37 Score=289.65 Aligned_cols=356 Identities=25% Similarity=0.354 Sum_probs=199.8
Q ss_pred CCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCC
Q 009136 46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 123 (542)
..+.|++++|.+..+. ..|.++++|+.+.+..|.++.+|.......||+.|+|.+|.|+++ .+.+..++.|+.|+++.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 3555666666655442 445566666666666666666655555555566666666666554 23355556666666666
Q ss_pred CcCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc-c
Q 009136 124 NQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P 200 (542)
Q Consensus 124 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~ 200 (542)
|.+++++. .|..-.++++|+++.|.|+.+..+ |..+.+|.+|.++.|+++.++...|.++++|+.|++..|.++.+ -
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 66665552 344445566666666666554332 55555666666666666666666566666666666666655443 2
Q ss_pred cccCCCCcccEEEccCCCCccCC-CCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCccc--chhhhccc
Q 009136 201 ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEY--CVEACQLR 276 (542)
Q Consensus 201 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~ 276 (542)
..|..+++|+.+.+..|.+..+. +.|-.+.++++++++.|.+..+ ..++.+++.|+.|+++.|.|..+ ..+.+..+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 34555566666666666555442 3445556666666666655544 23455556666666666655533 22333344
Q ss_pred ccEEEccCCCCCCCChh-hcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcc
Q 009136 277 LSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (542)
Q Consensus 277 L~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (542)
|+.|+++.|.++.+++. +..+..|+.|+++.|.+.++...+|
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af------------------------------------- 361 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF------------------------------------- 361 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-------------------------------------
Confidence 55555555555554432 4445555555555555443322221
Q ss_pred cccccEEEecCCCCCCCCccccccCCccEEECCCCcccc----cChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcE
Q 009136 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE----LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431 (542)
Q Consensus 356 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 431 (542)
....+|++|++++|.+.. -...|.++++|+.|++.+|+++.++..+|.++++|++
T Consensus 362 ---------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 362 ---------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred ---------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 124566666666665543 2223556666666666666666666666666666666
Q ss_pred EEccCCCCcccCCCccCCCCCCceEecCC
Q 009136 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (542)
Q Consensus 432 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 460 (542)
|+|.+|.|-.|..++|..+ .|++|.++.
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcc
Confidence 6666666666666666655 666666554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-37 Score=289.16 Aligned_cols=378 Identities=27% Similarity=0.375 Sum_probs=226.3
Q ss_pred CcEEEcCCCcccchh-HhhcCC--CCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcC
Q 009136 47 LQKLILAHNNIEKLK-EDLRNL--PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (542)
Q Consensus 47 L~~L~l~~~~~~~l~-~~l~~~--~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 122 (542)
-+.|++++..++.+. +.+..+ ..-+.|++++|++..+ +..|.++++|+.+++..|.++.+|.......+|+.|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 455777777777553 223322 2345588888888766 456788888888888888888887766666678888888
Q ss_pred CCcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136 123 SNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (542)
Q Consensus 123 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (542)
+|.|.++. ..+...+.|++||++.|.+..++.. |..-.++++|++++|.|+.+....|.++.+|..|.++.|.++.+|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 88877664 4566677888888888888777653 666678888888888888887777888778888888888877777
Q ss_pred c-ccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCcccc-hhccCCCCccEEEcCCCcCcccchhhhcccc
Q 009136 201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (542)
Q Consensus 201 ~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L 277 (542)
. .|+++++|+.|++..|++..+ -..|+++++|+.+.|..|.+..+. .+|..+.++++|+++.|+++...
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-------- 285 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-------- 285 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh--------
Confidence 4 456677777777777777654 235566666666666666665442 23444555555555444433221
Q ss_pred cEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccc
Q 009136 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357 (542)
Q Consensus 278 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (542)
..++.+++.|+.|+++.|.+..+.
T Consensus 286 -------------~g~lfgLt~L~~L~lS~NaI~rih------------------------------------------- 309 (873)
T KOG4194|consen 286 -------------EGWLFGLTSLEQLDLSYNAIQRIH------------------------------------------- 309 (873)
T ss_pred -------------cccccccchhhhhccchhhhheee-------------------------------------------
Confidence 113445555555555555443221
Q ss_pred cccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (542)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n 437 (542)
++.++.+++|++|+++.|.++.++++.|..+..|++|.|++|
T Consensus 310 --------------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 310 --------------------------------------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred --------------------------------------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 122344455555555555555555555555555555555555
Q ss_pred CCcccCCCccCCCCCCceEecCCCcCCCCC---CCCCCCCchhHHHHH-hhccccCch-hhhcCCCCCEEeCCCCccccc
Q 009136 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPE---NPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSI 512 (542)
Q Consensus 438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l-~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l 512 (542)
++..+...+|..+++|++||+++|.++... ...|..+++|++|.+ .+++++++. .+..+++|+.||+++|.+.++
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 554444444444555555555555443221 123444444444444 444444442 244556666666666666555
Q ss_pred -CccccCCCCCCEEEC
Q 009136 513 -PEGFKNLTSLTELDL 527 (542)
Q Consensus 513 -~~~l~~~~~L~~L~l 527 (542)
++.|.+| .|++|-+
T Consensus 432 q~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVM 446 (873)
T ss_pred cccccccc-hhhhhhh
Confidence 5556666 6665544
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-37 Score=301.22 Aligned_cols=477 Identities=27% Similarity=0.340 Sum_probs=389.0
Q ss_pred eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchHhhhCCC
Q 009136 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (542)
Q Consensus 13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~ 91 (542)
.+|.+..+++-||..++.. ..+..|++++|.+-..| +...+.-+|+.|+++++.+...|..+..++
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~ 68 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS 68 (1081)
T ss_pred CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence 4688889999999998874 45889999998776544 445556669999999999999999999999
Q ss_pred CCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC-
Q 009136 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN- 170 (542)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~- 170 (542)
+|+.|+++.|-+..+|....++.+|+++++.+|.+..+|..+..+.+|++|+++.|.+..+|.-+..+..++.+..++|
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence 9999999999999999999999999999999999999999999999999999999999999998999999999999988
Q ss_pred cccccchhhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhc
Q 009136 171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (542)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 249 (542)
++...+ . ..++.+++..+.+. .++..+..+.. .+++.+|.+. ...+..+++|+.+....|++..+..
T Consensus 149 ~~~~lg-----~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~-- 216 (1081)
T KOG0618|consen 149 KIQRLG-----Q-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELEI-- 216 (1081)
T ss_pred hhhhhc-----c-ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEEe--
Confidence 222222 2 22778888888774 45555555555 6999999877 2456778899999998888886522
Q ss_pred cCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHH
Q 009136 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (542)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (542)
.-++++.|+.+.|.++.......+..++.++++++.+..+|.++..+.+++.++.+.|++..++..++.......+...
T Consensus 217 -~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 217 -SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred -cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 3478999999999999777777777899999999999999999999999999999999998887777665554444443
Q ss_pred hhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcccccc--CCccEEECCCCcccccChh-cccCccCc
Q 009136 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE-LSSCASLQ 406 (542)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~l~~~-~~~~~~L~ 406 (542)
...+....... .....+++|++..+.+..+|..+... .+++.++.+.+.+..+|.. =...+.|+
T Consensus 296 ~nel~yip~~l-------------e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 296 YNELEYIPPFL-------------EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhhhCCCcc-------------cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 33333222111 11246788888888888888765542 3477777787777777742 13467799
Q ss_pred EEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhc
Q 009136 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQ 485 (542)
Q Consensus 407 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~ 485 (542)
.|++.+|.+++-....+.+.+.|+.|+|++|++..+++..+.+++.|++|+++||+++.+. .+..+|+.|+.|.. .++
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCc
Confidence 9999999999988888999999999999999999999999999999999999999999874 78899999999999 777
Q ss_pred cccCchhhhcCCCCCEEeCCCCcccc--cCccccCCCCCCEEECCCCc
Q 009136 486 LREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNN 531 (542)
Q Consensus 486 ~~~~~~~l~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~ 531 (542)
+...| .+..+++|+.+|++.|+++. +|+.... |+|++||++||.
T Consensus 442 l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 442 LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 88888 88999999999999999884 3554333 899999999996
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.5e-34 Score=267.73 Aligned_cols=358 Identities=29% Similarity=0.434 Sum_probs=277.0
Q ss_pred hceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhh
Q 009136 11 SGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (542)
Q Consensus 11 l~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~ 88 (542)
.+-+|+++|.+. .+|+++-+ ++.++.|.+.+..+.++|+-+..+++|++|.+.+|.+.++-+.++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs 75 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS 75 (1255)
T ss_pred eecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc
Confidence 355788888776 77777765 678888888888888888888888888888888888887777788
Q ss_pred CCCCCcEEecCCCccc--cCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcc-cccCCCccEE
Q 009136 89 ELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL 165 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L 165 (542)
.++.|+.+.+.+|++. .+|..+-.+.-|+.|++++|++...|..+..-+++-.|++++|+|.++|.. +.++..|-.|
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 8888888888888766 678888888888888888888888888888888888888888888888766 5677788888
Q ss_pred EccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCc--cCCCCCcCCCCCcEEEcCCCcC
Q 009136 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNAL 242 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~ 242 (542)
++++|++..+++. ...+.+|++|.+++|.+..+. ..+..+++|+.|.+++++-+ .+|..+..+.+|..++++.|.+
T Consensus 156 DLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 8888888777766 777788888888888765332 23456777888888877644 6777888888888888888888
Q ss_pred cccchhccCCCCccEEEcCCCcCcccchhhhcc-cccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCC
Q 009136 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321 (542)
Q Consensus 243 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~-~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (542)
..+|..+.++++|+.|++++|.++.+......- ++++|++|.|.++.+|..+..+++|+.|..++|++
T Consensus 235 p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL----------- 303 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL----------- 303 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc-----------
Confidence 888888888888888888888888665554443 37888888888888888888888888777777764
Q ss_pred cHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhccc
Q 009136 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS 401 (542)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~ 401 (542)
.+..+|+.++.+..|+.+...+|.+.-+|+.++.
T Consensus 304 ----------------------------------------------~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR 337 (1255)
T KOG0444|consen 304 ----------------------------------------------TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR 337 (1255)
T ss_pred ----------------------------------------------cccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence 2346677777777788888888877778888888
Q ss_pred CccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (542)
Q Consensus 402 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~ 440 (542)
|++|+.|.++.|.+-.++.. +--++.|+.|++..|+-.
T Consensus 338 C~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCc
Confidence 88888888888877776655 366788888888877643
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.6e-34 Score=281.11 Aligned_cols=460 Identities=26% Similarity=0.351 Sum_probs=277.0
Q ss_pred hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCC
Q 009136 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (542)
Q Consensus 11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l 90 (542)
++.|++++|-+-+.|-+..++ +-+|+.|+++.+.+...|..+..+++|+.|+++.|.+..+|.+..++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 555666666655555555444 44466666666666666666666666666666666666666666666
Q ss_pred CCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCC-------------------ccc-
Q 009136 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-------------------CIT- 150 (542)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------~~~- 150 (542)
.+|+++.|..|....+|..+..+.+|+.|+++.|.+..+|..+..++.+..+..++| .+.
T Consensus 91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG 170 (1081)
T ss_pred hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence 666666666666666666666666666666666666666655555555444444444 222
Q ss_pred cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCC
Q 009136 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (542)
Q Consensus 151 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (542)
.++.+...+.+ .|++..|.+...+ +..+.+|+.+....|.+..+. -.-++++.|....|.+... ....-..
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~-~~~p~p~ 241 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTL-DVHPVPL 241 (1081)
T ss_pred chhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceee-ccccccc
Confidence 22223333333 4777777766222 556667777777777665543 1236677777777777633 2233456
Q ss_pred CCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhccc-ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCc
Q 009136 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (542)
Q Consensus 231 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~ 309 (542)
+|+.++++.+.+..+|.++..+.+|+.++..+|.+..++....... |+.+++..|.+..+|+..+..+.|++|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 8899999999999999999999999999999999988877776655 888999999988899888889999999999999
Q ss_pred cccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcccc-ccCCccEEECC
Q 009136 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLS 388 (542)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~ 388 (542)
+..++...+..... .+..+..+.+.+...|..-. ..+.|+.|.+.
T Consensus 322 L~~lp~~~l~v~~~----------------------------------~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNA----------------------------------SLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred ccccchHHHhhhhH----------------------------------HHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 88877533322111 11112222222222221111 12345555555
Q ss_pred CCcccc--cChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCC
Q 009136 389 RNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466 (542)
Q Consensus 389 ~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 466 (542)
+|.+++ +| .+.+.++|+.|++++|.+..++...+.+++.|++|+|+||++..++ ....+++.|+.|...+|++...
T Consensus 368 nN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred cCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeec
Confidence 555443 22 2444555555555555555555555555555555555555555544 2244555555555555554432
Q ss_pred CCCCCCCCchhHHHHH-hhcccc--CchhhhcCCCCCEEeCCCCccccc-CccccCCCCCCEEECCCC
Q 009136 467 ENPPFSSLPHLQELYL-RMQLRE--APTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDN 530 (542)
Q Consensus 467 ~~~~~~~~~~L~~L~l-~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~ 530 (542)
. .+..++.|+.+++ ++++.. ++.... .+.|++||++||.-..+ -+.|..+.++...++.-+
T Consensus 446 P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 446 P--ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred h--hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 1 4445555555555 444432 222211 17899999999853322 344666777777777665
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-33 Score=264.57 Aligned_cols=363 Identities=25% Similarity=0.367 Sum_probs=306.6
Q ss_pred ecCCcEEEcCCCccc--chhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEc
Q 009136 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 121 (542)
++-+|-.++++|.+. .+|.+...+..++.|.|...++..+|..++.+.+|++|.+.+|++.++-..++.++.|+.+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 455888999999988 789999999999999999999999999999999999999999999998888999999999999
Q ss_pred CCCcCC--cCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc
Q 009136 122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (542)
Q Consensus 122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (542)
+.|++. .+|..++.+..|..||+++|.+.+.|..+.+-+++-.|++++|+|..|+...|.++.-|-.|++++|.++.+
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence 999987 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCccEEEcCCCcCcccchhhhccc
Q 009136 200 PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276 (542)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 276 (542)
|..+..+..|++|.+++|.+... ...+..+++|+.|.+++++-+ .+|..+..+.+|..++++.|
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N------------- 232 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN------------- 232 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-------------
Confidence 99999999999999999987632 245667788888888888655 67777777777766666555
Q ss_pred ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhccc
Q 009136 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356 (542)
Q Consensus 277 L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (542)
++..+|..+..+++|+.|++++|.++.+.... ...
T Consensus 233 ---------~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~------------------------------------~~W 267 (1255)
T KOG0444|consen 233 ---------NLPIVPECLYKLRNLRRLNLSGNKITELNMTE------------------------------------GEW 267 (1255)
T ss_pred ---------CCCcchHHHhhhhhhheeccCcCceeeeeccH------------------------------------HHH
Confidence 45566677777777888888887775542111 111
Q ss_pred ccccEEEecCCCCCCCCccccccCCccEEECCCCcc--cccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEc
Q 009136 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI--QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434 (542)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l--~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L 434 (542)
.++++++++.++++.+|.++..++.|+.|...+|++ ..+|+.++.+.+|+++..++|.+.-++.+ +++|+.|+.|.|
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg-lcRC~kL~kL~L 346 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG-LCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh-hhhhHHHHHhcc
Confidence 345677777888888888888889999999999875 46999999999999999999988877766 689999999999
Q ss_pred cCCCCcccCCCccCCCCCCceEecCCCcCCCC
Q 009136 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466 (542)
Q Consensus 435 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 466 (542)
++|++..++. ++.-++-|+.||+..|.--..
T Consensus 347 ~~NrLiTLPe-aIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 347 DHNRLITLPE-AIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred cccceeechh-hhhhcCCcceeeccCCcCccC
Confidence 9999877764 477789999999998854433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.4e-22 Score=220.38 Aligned_cols=300 Identities=22% Similarity=0.288 Sum_probs=143.3
Q ss_pred CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCc-cccCCccccccCCccEEEcCCC
Q 009136 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS-IMKIPDEIGSATALVKFDCSSN 124 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~ 124 (542)
+|+.|++.++.+..+|..+ ...+|+.|++.++.+..++..+..+++|++|+++++. +..+| .+..+++|++|++++|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCC
Confidence 4555555555555555444 2345555555555555555545555555555555442 33343 2444555555555554
Q ss_pred c-CCcCCccccCCCCCCeEEccCC-ccccCCcccccCCCccEEEccCCccc-ccchhhhhccccCcEEEcCCcccCcccc
Q 009136 125 Q-LKELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGMPE 201 (542)
Q Consensus 125 ~-~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (542)
. +..+|..+.++++|++|++++| .+..+|... .+++|+.|++++|... .++ ....+|++|+++++.++.+|.
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc----cccCCcCeeecCCCccccccc
Confidence 3 3345555555555555555554 233444332 3455555555554321 111 112344555555555544443
Q ss_pred ccCCCCcccEEEccCCCCccCCC--------CCcCCCCCcEEEcCCCc-CcccchhccCCCCccEEEcCCCcCcccchhh
Q 009136 202 TIGSLSRLIRLDLHQNRILSIPS--------SISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272 (542)
Q Consensus 202 ~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 272 (542)
.+ .+++|+.|.+.++....+.. ....+++|+.|++++|. +..+|..+.++++|+.|++++|.
T Consensus 743 ~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~-------- 813 (1153)
T PLN03210 743 NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI-------- 813 (1153)
T ss_pred cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC--------
Confidence 32 23444444444322111100 11123344444444442 22344444444444444444431
Q ss_pred hcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009136 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (542)
Q Consensus 273 ~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (542)
.+..+|... .+++|+.|++++|..... .
T Consensus 814 -------------~L~~LP~~~-~L~sL~~L~Ls~c~~L~~--------------------------------------~ 841 (1153)
T PLN03210 814 -------------NLETLPTGI-NLESLESLDLSGCSRLRT--------------------------------------F 841 (1153)
T ss_pred -------------CcCeeCCCC-CccccCEEECCCCCcccc--------------------------------------c
Confidence 233333332 455556666655431000 0
Q ss_pred hcccccccEEEecCCCCCCCCccccccCCccEEECCCC-cccccChhcccCccCcEEEccCC
Q 009136 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQTLILSRN 413 (542)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~ 413 (542)
...+.+++++++.++.+..+|..+..+++|+.|++.+| ++..+|..+..+++|+.+++++|
T Consensus 842 p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 842 PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 00123455666666666666666666677777777765 36666665666667777777666
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.4e-21 Score=214.50 Aligned_cols=176 Identities=23% Similarity=0.263 Sum_probs=109.7
Q ss_pred ccccCCCCCCeEEccCCccc-------cCCcccccC-CCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136 131 SSLGRCLNLSDFKASNNCIT-------SLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (542)
Q Consensus 131 ~~~~~~~~L~~L~l~~~~~~-------~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (542)
..|..+++|+.|.+..+... .+|..+..+ .+|+.|.+.++++..++.. + ...+|++|++.++.++.++..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccc
Confidence 34666777777776544221 344455444 3577777777777666554 2 356777777777777777777
Q ss_pred cCCCCcccEEEccCCC-CccCCCCCcCCCCCcEEEcCCCc-CcccchhccCCCCccEEEcCCC-cCcccchhhhcccccE
Q 009136 203 IGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSV 279 (542)
Q Consensus 203 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~L~~ 279 (542)
+..+++|+.++++++. +..+| .+..+++|+.|++++|. +..+|..+..+++|+.|++++| .++.++......+|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 7777788888887654 34444 46667788888887764 4467777777778888888775 4555554443344666
Q ss_pred EEccCCC-CCCCChhhcCcCCCcEEEcCCCcccc
Q 009136 280 LDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRT 312 (542)
Q Consensus 280 l~l~~~~-l~~l~~~l~~~~~L~~L~l~~~~~~~ 312 (542)
+++++|. +..+|. ...+|+.|+++++.+..
T Consensus 709 L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 709 LNLSGCSRLKSFPD---ISTNISWLDLDETAIEE 739 (1153)
T ss_pred EeCCCCCCcccccc---ccCCcCeeecCCCcccc
Confidence 6666653 222322 13456666666665543
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=6.4e-25 Score=196.43 Aligned_cols=381 Identities=23% Similarity=0.298 Sum_probs=226.4
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (542)
..+|+++.+++++|.++.. .-.++.|..|.|+.|| .+|+.+++||.|||++|.|..+ |.+|.+
T Consensus 49 ~~VdCr~~GL~eVP~~LP~---------------~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPP---------------ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred ceEEccCCCcccCcccCCC---------------cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 4578888899999988854 5788888888888887 5788888888888888888876 678888
Q ss_pred CCCCcEEecCC-CccccCCcc-ccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccCCc-ccccCCCccEE
Q 009136 90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (542)
Q Consensus 90 l~~L~~L~l~~-~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L 165 (542)
+..|..|-+.+ |+|+.+|.. |+.+..|+-|.+.-|++.-++ ..+..++++..|.+.++.+..+++ .|..+..++++
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 88888777766 788888754 788888888888777777443 567778888888888888887766 46777777777
Q ss_pred EccCCcccc------------cchhhhhccccCcEEEcCCc--------------------------ccCccc-cccCCC
Q 009136 166 DVEGNKLTV------------LSNNLIASWTMLTELIASKN--------------------------LLNGMP-ETIGSL 206 (542)
Q Consensus 166 ~l~~~~~~~------------~~~~~~~~~~~L~~L~l~~~--------------------------~~~~~~-~~~~~~ 206 (542)
.+..|++.. .....++.........+... .....| .+|..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 776665210 00001111111111111111 111122 235666
Q ss_pred CcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhhccc--ccEEEc
Q 009136 207 SRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDL 282 (542)
Q Consensus 207 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~--L~~l~l 282 (542)
++|++|++++|+++.+ +.+|.+...+++|.+..|++..+ ...|.++..|++|++.+|+|+.+.+..+... |.++.+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 6666666666666655 34566666666666666666644 2345566666666666666666555544432 555555
Q ss_pred cCCCCCC------CChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhccc
Q 009136 283 SNNSLSG------LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356 (542)
Q Consensus 283 ~~~~l~~------l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (542)
-.|.+.. +-.++..-. ......++ .|
T Consensus 354 ~~Np~~CnC~l~wl~~Wlr~~~------------------------------------~~~~~~Cq------------~p 385 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGEWLRKKS------------------------------------VVGNPRCQ------------SP 385 (498)
T ss_pred ccCcccCccchHHHHHHHhhCC------------------------------------CCCCCCCC------------CC
Confidence 4443222 111111100 00000000 01
Q ss_pred ccccEEEecCCCCC-------------CCCccccccCCccEE-ECCCCcccccChhcccCccCcEEEccCCcCCCCChhh
Q 009136 357 VTSKELSLEGMNLS-------------AIPSEIWEAGEITKL-DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI 422 (542)
Q Consensus 357 ~~l~~l~l~~~~~~-------------~~~~~~~~~~~L~~L-~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~ 422 (542)
..++.+.+++..+. .-+.....++.+... -.++..+..+|..+. ..-+++++.+|.++.++.+
T Consensus 386 ~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~- 462 (498)
T KOG4237|consen 386 GFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE- 462 (498)
T ss_pred chhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH-
Confidence 11111222211111 111112223333332 233334555665332 2456788888888888876
Q ss_pred hhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (542)
Q Consensus 423 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 461 (542)
.+.+| .+++++|++..+....|.++.+|..|-+++|
T Consensus 463 --~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 463 --LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred --HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 34566 7888888888777777888888888877764
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.9e-21 Score=198.01 Aligned_cols=257 Identities=30% Similarity=0.372 Sum_probs=217.2
Q ss_pred hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCC
Q 009136 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (542)
Q Consensus 11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l 90 (542)
-..|+++.++++++|..+. ++|+.|++.+|.++.+|.. .++|++|++++|.++.+|.. .
T Consensus 203 ~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p 261 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---P 261 (788)
T ss_pred CcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---c
Confidence 5679999999999999774 3699999999999988853 57999999999999988753 4
Q ss_pred CCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC
Q 009136 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (542)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 170 (542)
++|+.|++++|.++.+|..+ ++|+.|++++|+++.+|.. .++|++|++++|.+..++.. ..+|+.|.+++|
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN 332 (788)
T ss_pred cccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC
Confidence 68999999999999887643 5788999999999988763 46899999999999988752 356888999999
Q ss_pred cccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhcc
Q 009136 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (542)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 250 (542)
.++.++. ...+|+.|++++|.++.+|.. ..+|+.|++.+|.+..+|.. ..+|+.|++++|.+..+|..
T Consensus 333 ~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l-- 400 (788)
T PRK15387 333 QLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL-- 400 (788)
T ss_pred ccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--
Confidence 9987664 125899999999999998853 36788899999999888754 35799999999999988764
Q ss_pred CCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccc
Q 009136 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (542)
Q Consensus 251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~ 312 (542)
.++|+.|++++|.++.++.. ...|+.|++++|.++.+|..+..+++++.+++++|+++.
T Consensus 401 -~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 -PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred -ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 36899999999999988753 346899999999999999999999999999999999863
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.6e-21 Score=196.94 Aligned_cols=264 Identities=30% Similarity=0.358 Sum_probs=133.3
Q ss_pred CCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCc
Q 009136 69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148 (542)
Q Consensus 69 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 148 (542)
.-..|+++++.++++|..+. .+|+.|++++|.++.+|.. .++|++|++++|+++.+|.. .++|++|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 34455666665555555443 2555666666555555532 34555555555555555432 2345555555555
Q ss_pred cccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcC
Q 009136 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228 (542)
Q Consensus 149 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 228 (542)
+..++.. ..+|+.|++++|+++.++. ..++|+.|++++|.+..+|.. ...|+.
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~----------------- 326 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCK----------------- 326 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---cccccc-----------------
Confidence 5444331 1344455555554444332 123444444444444444321 123444
Q ss_pred CCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCC
Q 009136 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308 (542)
Q Consensus 229 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~ 308 (542)
|++++|.+..+|.. ..+|+.|++++|.++.++.. +..++.|++++|.+..+|.. ..+|+.|++++|
T Consensus 327 ------L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 327 ------LWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN 392 (788)
T ss_pred ------cccccCcccccccc---ccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEecCC
Confidence 44444444444321 12445555555555444321 22345555555555554432 234555666665
Q ss_pred ccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECC
Q 009136 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388 (542)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 388 (542)
.+..++.. +..++.+++++|.+..+|.. +.+|+.|+++
T Consensus 393 ~Lt~LP~l---------------------------------------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 393 RLTSLPVL---------------------------------------PSELKELMVSGNRLTSLPML---PSGLLSLSVY 430 (788)
T ss_pred cccCCCCc---------------------------------------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhc
Confidence 54332210 12344555555555555532 2356777777
Q ss_pred CCcccccChhcccCccCcEEEccCCcCCCCChhhh
Q 009136 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL 423 (542)
Q Consensus 389 ~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l 423 (542)
+|.++.+|..+..+++|+.|++++|.+++.....+
T Consensus 431 ~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 431 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 77777777777777777777777777776554444
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.3e-24 Score=191.95 Aligned_cols=388 Identities=23% Similarity=0.315 Sum_probs=253.3
Q ss_pred ecCCc--EEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccC-CccccccCCccEE
Q 009136 44 AVDLQ--KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKF 119 (542)
Q Consensus 44 ~~~L~--~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L 119 (542)
|++.+ ..+.++-.++++|..++. .-..+.|..|.|+.+|. +|..+++|+.|||++|.|+.+ |++|..+++|..|
T Consensus 43 Cs~~~g~~VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 43 CSDVEGGIVDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSL 120 (498)
T ss_pred cCCCCCceEEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHH
Confidence 44443 345566677788877763 67889999999999976 999999999999999999977 7889999998887
Q ss_pred EcCC-CcCCcCCc-cccCCCCCCeEEccCCccccCCc-ccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCccc
Q 009136 120 DCSS-NQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (542)
Q Consensus 120 ~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (542)
-+.+ |+|+++|+ .|+++..++.|.+.-+.+..+.. .|..++++..|.+..|.+..+....|..+..++++.+..|.+
T Consensus 121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 6666 89999985 67889999999999999886654 488899999999999999998888899999999988777663
Q ss_pred Cc---c----------ccccCCCCcccEEEccCCCCc--------------------------cCC-CCCcCCCCCcEEE
Q 009136 197 NG---M----------PETIGSLSRLIRLDLHQNRIL--------------------------SIP-SSISGCCSLAEFY 236 (542)
Q Consensus 197 ~~---~----------~~~~~~~~~L~~L~l~~~~~~--------------------------~~~-~~~~~~~~L~~l~ 236 (542)
.. + |-.+++........+.+.++. ..| ..|..+++|++++
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 11 1 111222221111112111111 111 1245666777777
Q ss_pred cCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhhcc--cccEEEccCCCCCCC-ChhhcCcCCCcEEEcCCCcccc
Q 009136 237 MGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT 312 (542)
Q Consensus 237 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~--~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~ 312 (542)
+++|.++.+ +.+|.....++.|.+..|++..+....+.. .|+.|++.+|+++.+ |..|.....|..+++-.|.+.
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~- 359 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN- 359 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc-
Confidence 777777755 445666667777777777666555554443 266677777666664 333555666666666665542
Q ss_pred ccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcc
Q 009136 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392 (542)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 392 (542)
+.....+...+.... .....|. ...+..++.+.+++..+
T Consensus 360 ----------------------------CnC~l~wl~~Wlr~~------------~~~~~~~-Cq~p~~~~~~~~~dv~~ 398 (498)
T KOG4237|consen 360 ----------------------------CNCRLAWLGEWLRKK------------SVVGNPR-CQSPGFVRQIPISDVAF 398 (498)
T ss_pred ----------------------------CccchHHHHHHHhhC------------CCCCCCC-CCCCchhccccchhccc
Confidence 122222222222221 1111111 11223455555554433
Q ss_pred cc-----------cC--hhcccCccCc-EEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEec
Q 009136 393 QE-----------LP--PELSSCASLQ-TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (542)
Q Consensus 393 ~~-----------l~--~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l 458 (542)
.+ .+ .+-..|+.+. +...++..++.++..+ ...-+++++.+|.++.++.+ .+.+| .+|+
T Consensus 399 ~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i---P~d~telyl~gn~~~~vp~~---~~~~l-~~dl 471 (498)
T KOG4237|consen 399 GDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI---PVDVTELYLDGNAITSVPDE---LLRSL-LLDL 471 (498)
T ss_pred cccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC---CchhHHHhcccchhcccCHH---HHhhh-hccc
Confidence 21 11 1223455554 3455555565554321 23567889999999998866 46778 9999
Q ss_pred CCCcCCCCCCCCCCCCchhHHHHH
Q 009136 459 SYNIASLPENPPFSSLPHLQELYL 482 (542)
Q Consensus 459 ~~n~~~~~~~~~~~~~~~L~~L~l 482 (542)
++|++.......|.+++.|.+|.+
T Consensus 472 s~n~i~~Lsn~tf~n~tql~tlil 495 (498)
T KOG4237|consen 472 SNNRISSLSNYTFSNMTQLSTLIL 495 (498)
T ss_pred ccCceehhhcccccchhhhheeEE
Confidence 999999998899999998887765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=4.6e-20 Score=189.21 Aligned_cols=245 Identities=27% Similarity=0.434 Sum_probs=135.0
Q ss_pred hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCC
Q 009136 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (542)
Q Consensus 11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l 90 (542)
.+.|++++.+++++|..+. ++++.|++++|.+..+|..+. .+|+.|++++|.++.+|..+.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-- 240 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP-- 240 (754)
T ss_pred ceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--
Confidence 4556666666666665542 246666666666666655443 356666666666665555433
Q ss_pred CCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC
Q 009136 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (542)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 170 (542)
.+|+.|++++|.+..+|..+. .+|+.|++++|++..+|..+. ++|++|++++|.+..+|..+. ++|
T Consensus 241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL-------- 306 (754)
T PRK15370 241 DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGI-------- 306 (754)
T ss_pred ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhH--------
Confidence 256666666666655555443 355666666655555554332 355555555555554443222 234
Q ss_pred cccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhcc
Q 009136 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (542)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 250 (542)
+.|++++|.++.+|..+. ++|+.|++.+|.++.+|..+ +++|+.|++++|.+..+|..+.
T Consensus 307 ----------------~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp 366 (754)
T PRK15370 307 ----------------THLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP 366 (754)
T ss_pred ----------------HHHHhcCCccccCCcccc--ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc
Confidence 444555555544443221 45555566665555555433 2456666666666665555442
Q ss_pred CCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhc----CcCCCcEEEcCCCccc
Q 009136 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG----KMTTLRKLLLTGNPLR 311 (542)
Q Consensus 251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~----~~~~L~~L~l~~~~~~ 311 (542)
++|++|++++|.++.++... ...|+.+++++|.+..+|..+. .++.+..+++.+|.+.
T Consensus 367 --~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 --PTITTLDVSRNALTNLPENL-PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 46666666666666555442 2246666777777666655433 2356677777777654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=6.7e-20 Score=188.03 Aligned_cols=228 Identities=28% Similarity=0.408 Sum_probs=177.2
Q ss_pred CCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCC
Q 009136 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN 147 (542)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 147 (542)
.+...|++++++++++|..+. .+|+.|++++|.++.+|..+. ++|++|++++|+++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 356777787777777776553 467888888888777776554 478888888887777775443 46888888888
Q ss_pred ccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCc
Q 009136 148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227 (542)
Q Consensus 148 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 227 (542)
.+..+|..+. .+|+.|++++|++..++.. + .++|+.|++++|.++.+|..+. ++|+.|++.+|.+..+|..+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l- 323 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL- 323 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc-
Confidence 8877776554 5788888888888766543 2 2478899999998888886553 57999999999999887644
Q ss_pred CCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCC
Q 009136 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307 (542)
Q Consensus 228 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~ 307 (542)
.++|+.|++++|.++.+|..+. ++|+.|++++|.++.++... +..|+.|++++|.++.+|..+. ..|+.|++++
T Consensus 324 -~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 324 -PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLP--AALQIMQASR 397 (754)
T ss_pred -cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc
Confidence 3689999999999999887664 79999999999999876543 4679999999999999988765 3688999999
Q ss_pred Cccccccc
Q 009136 308 NPLRTLRS 315 (542)
Q Consensus 308 ~~~~~~~~ 315 (542)
|++..++.
T Consensus 398 N~L~~LP~ 405 (754)
T PRK15370 398 NNLVRLPE 405 (754)
T ss_pred CCcccCch
Confidence 99877654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.4e-19 Score=140.41 Aligned_cols=162 Identities=29% Similarity=0.453 Sum_probs=136.3
Q ss_pred eeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEc
Q 009136 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (542)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 121 (542)
+++.+...|.+++|.++.+|..+..+.+|+.|+++++++..+|.+++.+++|+.|+++-|++..+|..|+.+|.|+.|++
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 44678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCcCC--cCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc
Q 009136 122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (542)
Q Consensus 122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (542)
.+|++. .+|..|+.++.|+.|+++++.+..+|..++++++|+.|.+..|.+-.++.. ++.+.+|++|.+.+|.++.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeec
Confidence 888877 677788888888888888888888888888888888888888887777666 77888888888888888888
Q ss_pred ccccC
Q 009136 200 PETIG 204 (542)
Q Consensus 200 ~~~~~ 204 (542)
|..++
T Consensus 189 ppel~ 193 (264)
T KOG0617|consen 189 PPELA 193 (264)
T ss_pred Chhhh
Confidence 74443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=1.7e-18 Score=137.64 Aligned_cols=165 Identities=35% Similarity=0.619 Sum_probs=150.1
Q ss_pred ccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCce
Q 009136 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (542)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 455 (542)
++....++.|.++.|+++.+|..+..+.+|+.|++++|++++++.. +..+++|+.|+++-|++...+ .+|+.+|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lp-rgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILP-RGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCc-cccCCCchhhh
Confidence 4556789999999999999999999999999999999999999877 489999999999999887555 55999999999
Q ss_pred EecCCCcCCC-CCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCC
Q 009136 456 LDLSYNIASL-PENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 456 L~l~~n~~~~-~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~ 533 (542)
||+.+|.+.. ..|..|-.+..|+-|++ .+....+|..++++++|+.|.++.|++-++|.-++.++.|++|.+.+|+++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 9999998853 45667888999999999 889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 009136 534 ALPPELVSV 542 (542)
Q Consensus 534 ~lp~~~~~~ 542 (542)
-+||+++.|
T Consensus 187 vlppel~~l 195 (264)
T KOG0617|consen 187 VLPPELANL 195 (264)
T ss_pred ecChhhhhh
Confidence 999998764
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.9e-16 Score=151.58 Aligned_cols=224 Identities=25% Similarity=0.256 Sum_probs=137.0
Q ss_pred ecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCc-------chHhhhCCCCCcEEecCCCccc-cCCccc
Q 009136 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIM-KIPDEI 110 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~~~-~l~~~~ 110 (542)
..+|++|+++++.++ .++..+...+++++++++++.+.. ++..+..+++|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 566888888888773 456667777888888888776652 2345667788888888887765 233344
Q ss_pred cccC---CccEEEcCCCcCCc-----CCccccCC-CCCCeEEccCCccc-----cCCcccccCCCccEEEccCCcccccc
Q 009136 111 GSAT---ALVKFDCSSNQLKE-----LPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS 176 (542)
Q Consensus 111 ~~l~---~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~ 176 (542)
..+. +|++|++++|++.. +...+..+ ++|+.|++++|.+. .+...+..+++|++|++++|.+....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 4333 38888888877662 22334455 67778888777766 23344556677777777777766321
Q ss_pred h----hhhhccccCcEEEcCCcccCc-----cccccCCCCcccEEEccCCCCccC-CCCC-----cCCCCCcEEEcCCCc
Q 009136 177 N----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI-PSSI-----SGCCSLAEFYMGNNA 241 (542)
Q Consensus 177 ~----~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-----~~~~~L~~l~l~~~~ 241 (542)
. ..+...++|++|++++|.++. +...+..+++|+.|++++|.+... ...+ ...+.|+++++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1 123344567777777776642 233455566677777777665521 0011 123566667776666
Q ss_pred Cc-----ccchhccCCCCccEEEcCCCcCcc
Q 009136 242 LS-----ALPAELGKLSKLGTLDLHSNQLKE 267 (542)
Q Consensus 242 ~~-----~~~~~~~~~~~L~~L~l~~~~i~~ 267 (542)
++ .+...+..+++|+.+++++|.++.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 64 223344555666666666666654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=5.4e-16 Score=148.50 Aligned_cols=253 Identities=22% Similarity=0.243 Sum_probs=185.8
Q ss_pred HHHHHHHhhceeeccCCcccccc-hhhhhccccCCCCCceeeecCCcEEEcCCCccc-------chhHhhcCCCCCcEEE
Q 009136 3 RILKAARTSGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------KLKEDLRNLPLLTVLN 74 (542)
Q Consensus 3 ~~~~~~~~l~~l~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~l~~~l~~~~~L~~L~ 74 (542)
..+.....++.++++++.++.-+ ..+.+.+.. .+++++++++++.+. .++..+..+++|+.|+
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRP---------QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh---------CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEE
Confidence 46778888999999999986321 122222222 677999999998765 2456788899999999
Q ss_pred cCCCCCCc-chHhhhCC---CCCcEEecCCCcccc-----CCcccccc-CCccEEEcCCCcCC-----cCCccccCCCCC
Q 009136 75 VSHNKLSE-LPAAIGEL---HMLKSLDVSFNSIMK-----IPDEIGSA-TALVKFDCSSNQLK-----ELPSSLGRCLNL 139 (542)
Q Consensus 75 l~~~~~~~-l~~~~~~l---~~L~~L~l~~~~~~~-----l~~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~~~~L 139 (542)
+++|.+.. .+..+..+ ++|++|++++|.+.. +...+..+ ++|+.|++++|.++ .++..+..+++|
T Consensus 88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 99999873 34444444 459999999998762 33445666 89999999999987 344566778899
Q ss_pred CeEEccCCccc-----cCCcccccCCCccEEEccCCcccccchh----hhhccccCcEEEcCCcccCcc-----cccc-C
Q 009136 140 SDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNGM-----PETI-G 204 (542)
Q Consensus 140 ~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-----~~~~-~ 204 (542)
++|++++|.+. .++..+...++|++|++++|.+...... .+..+++|++|++++|.++.. ...+ .
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 99999999887 2344466678999999999998754432 355678899999999988641 1111 1
Q ss_pred CCCcccEEEccCCCCc-----cCCCCCcCCCCCcEEEcCCCcCccc-----chhccCC-CCccEEEcCCCc
Q 009136 205 SLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALSAL-----PAELGKL-SKLGTLDLHSNQ 264 (542)
Q Consensus 205 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~-~~L~~L~l~~~~ 264 (542)
..+.|+.|++.+|.++ .+...+..+++|+.+++++|.+... ...+... +.++.+++.++.
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 3478999999999886 2334566678999999999998833 3344444 678888887764
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=3.5e-14 Score=126.44 Aligned_cols=222 Identities=20% Similarity=0.212 Sum_probs=135.8
Q ss_pred ecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCC----cch-------HhhhCCCCCcEEecCCCccc-c-
Q 009136 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-K- 105 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~----~l~-------~~~~~l~~L~~L~l~~~~~~-~- 105 (542)
...+++++|++|.+. .+.+.+.+.++|+..++++.-.. .+| .++-.+++|++|+||+|.+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 567888999998876 46677888889999888875322 233 35567788999999988765 2
Q ss_pred ---CCccccccCCccEEEcCCCcCCcC--------------CccccCCCCCCeEEccCCccccC-----CcccccCCCcc
Q 009136 106 ---IPDEIGSATALVKFDCSSNQLKEL--------------PSSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMS 163 (542)
Q Consensus 106 ---l~~~~~~l~~L~~L~l~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~l-----~~~~~~~~~L~ 163 (542)
+-+-+.+++.|++|++.+|.+... .+....-+.|+++....|++..- ...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 223356788888988888877621 12234456677777777766532 23455666777
Q ss_pred EEEccCCccccc----chhhhhccccCcEEEcCCcccCc-----cccccCCCCcccEEEccCCCCcc-----CCCCC-cC
Q 009136 164 KLDVEGNKLTVL----SNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSI-SG 228 (542)
Q Consensus 164 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~ 228 (542)
.+.+..|.|..- ....+..+++|+.|++.+|.++. +...++.+++|+.+++++|.+.. +...+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 777777666532 22345666667777777666642 33455566666666666665541 11111 23
Q ss_pred CCCCcEEEcCCCcCc-----ccchhccCCCCccEEEcCCCcC
Q 009136 229 CCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQL 265 (542)
Q Consensus 229 ~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i 265 (542)
.++|+.+.+.+|.++ .+...+...+.|..|++++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 455666666666555 1222233455555555555554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=3e-14 Score=134.60 Aligned_cols=208 Identities=30% Similarity=0.397 Sum_probs=164.5
Q ss_pred hHHHHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCC
Q 009136 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS 81 (542)
Q Consensus 2 ~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 81 (542)
++++.-...-..+.|++..+.++|-..+. +. +..-...+++.|.+.++|..+..|..|+.+.+..|.+.
T Consensus 43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~-~~----------ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r 111 (722)
T KOG0532|consen 43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS-YD----------LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR 111 (722)
T ss_pred hHHHHHHhhhcccccccchhhcCCCcccc-cc----------ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence 46677777778888888888888776665 22 34556678888888888888878888888888888888
Q ss_pred cchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCC
Q 009136 82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161 (542)
Q Consensus 82 ~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 161 (542)
.+|.++..+..|.+++|+.|.++.+|..+..++ |+.|-+++|+++.+|..++....|.+||.+.|.+..++..++.+.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 888888888888888888888888887776665 7788888888888888888888888888888888888888888888
Q ss_pred ccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCC
Q 009136 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (542)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 223 (542)
|+.|.+..|.+..++.. +. .-.|..|+++.|.+..+|-.|.+++.|++|-+.+|.+..=|
T Consensus 191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 88888888888777766 33 44567788888888888888888888888888888776443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1.4e-13 Score=122.61 Aligned_cols=231 Identities=22% Similarity=0.316 Sum_probs=173.8
Q ss_pred HHHHHHhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEcCCCccc----chh-------HhhcCCCCCc
Q 009136 4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----KLK-------EDLRNLPLLT 71 (542)
Q Consensus 4 ~~~~~~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~-------~~l~~~~~L~ 71 (542)
.+..+..++.|++|+|.+. +....+.+.+.. -++|++.++++--.. ++| +++..+++|+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~---------~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS---------KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhh---------cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 3445567899999999887 444445444443 578999999874221 333 4567889999
Q ss_pred EEEcCCCCCC--c---chHhhhCCCCCcEEecCCCccccC--------------CccccccCCccEEEcCCCcCCcCC--
Q 009136 72 VLNVSHNKLS--E---LPAAIGELHMLKSLDVSFNSIMKI--------------PDEIGSATALVKFDCSSNQLKELP-- 130 (542)
Q Consensus 72 ~L~l~~~~~~--~---l~~~~~~l~~L~~L~l~~~~~~~l--------------~~~~~~l~~L~~L~l~~~~~~~~~-- 130 (542)
.++||+|-+. . +-.-+.++..|++|.|.+|.+... ......-++|+.+..+.|++...+
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence 9999999777 2 333568899999999999987721 123456789999999999987443
Q ss_pred ---ccccCCCCCCeEEccCCccc-----cCCcccccCCCccEEEccCCcccccc----hhhhhccccCcEEEcCCcccCc
Q 009136 131 ---SSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG 198 (542)
Q Consensus 131 ---~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 198 (542)
..+...+.|+.+.+..|.|. .+...+..+++|+.|++..|.++.-. ..++..+++|+++++++|.++.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 45677889999999999876 33456899999999999999887433 3457788999999999999853
Q ss_pred -----ccccc-CCCCcccEEEccCCCCc-----cCCCCCcCCCCCcEEEcCCCcCc
Q 009136 199 -----MPETI-GSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 199 -----~~~~~-~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~ 243 (542)
+..++ ...+.|+.+.+.+|.++ .+...+...+.|+.|++++|.+.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 22222 33689999999999887 22334566899999999999984
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=4.1e-12 Score=125.07 Aligned_cols=179 Identities=31% Similarity=0.451 Sum_probs=144.1
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCC-CCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcC
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 122 (542)
.+.++.|++.++.+..++....... +|+.|+++++.+.+++..+..+++|+.|++++|.+..+|...+..++|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 4678888888888888887777774 888888888888888878888888888988888888888777788888888888
Q ss_pred CCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (542)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (542)
+|++..+|........|+++.++++.+...+..+..+.++..+.+.++++..... .+..++.++.|++++|.+..++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-hhccccccceecccccccccccc-
Confidence 8888888877667777888888888766666677778888888887777766422 26777788888888888888876
Q ss_pred cCCCCcccEEEccCCCCccCCC
Q 009136 203 IGSLSRLIRLDLHQNRILSIPS 224 (542)
Q Consensus 203 ~~~~~~L~~L~l~~~~~~~~~~ 224 (542)
+....+++.++++++.+...+.
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccCccCEEeccCccccccch
Confidence 7778888889998887765433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=5.9e-12 Score=124.00 Aligned_cols=195 Identities=33% Similarity=0.479 Sum_probs=132.7
Q ss_pred EEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccC-CccEEEcCCCcCCcCCccccCCCCCCeEEccCCccc
Q 009136 72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150 (542)
Q Consensus 72 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 150 (542)
.++...+.+......+.....++.|++.++.++.++....... +|+.|++++|++..++..++.+++|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4566666554333445555667777777777777766666664 777777777777776666677777777777777777
Q ss_pred cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCC
Q 009136 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (542)
Q Consensus 151 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (542)
.++......+.|+.|++++|.+..++.. ......|+++.+++|.....+..+.....+..+.+.++++..++..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence 7766555667777777777777766653 234445777777777655555566666777777777777666666777777
Q ss_pred CCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCccc
Q 009136 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (542)
Q Consensus 231 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 268 (542)
+++.+++++|.+..++. ++...+++.++++++.+...
T Consensus 256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 77777777777777766 77777777787777766544
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.2e-13 Score=130.67 Aligned_cols=212 Identities=29% Similarity=0.406 Sum_probs=164.7
Q ss_pred EEcCCCcCCcCCccccC--CCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCccc
Q 009136 119 FDCSSNQLKELPSSLGR--CLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (542)
Q Consensus 119 L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (542)
|.|++-+++.+|..-.. +..-...|++.|++..+|..+..+..|+.+.+..|.+..+... ++++..|+.++++.|.+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQL 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchh
Confidence 34444445555432222 2233345666677777777777777777777776666665544 66777777777777777
Q ss_pred CccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhccc
Q 009136 197 NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276 (542)
Q Consensus 197 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 276 (542)
..+|..+..++ |+.+-+++|+++.+|+.++....|..++.+.|.+..+|..+.++.+|+.+.+..|++..++.......
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp 212 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP 212 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc
Confidence 77777666655 88888999999999988888889999999999999999999999999999999999999999999888
Q ss_pred ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhc
Q 009136 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332 (542)
Q Consensus 277 L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (542)
|..||+++|++..+|-.|.+|+.|++|.+.+|.+.+-++.+...+....++++...
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 99999999999999999999999999999999999887766666555555554443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=7.1e-12 Score=104.99 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=39.3
Q ss_pred ecCCcEEEcCCCcccchhHhhc-CCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccc-cccCCccEEEc
Q 009136 44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC 121 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l 121 (542)
+.++++|+++++.|..|. .+. .+.+|+.|++++|.++++. .+..+++|+.|++++|.++.+++.+ ..+|+|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 456788888888887664 343 5677888888888887763 4666778888888888877776544 35777888888
Q ss_pred CCCcCCcCC--ccccCCCCCCeEEccCCccccCCcc----cccCCCccEEE
Q 009136 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLD 166 (542)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~L~ 166 (542)
++|++..+. ..+..+++|++|++.+|.+...+.. +..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 877776543 2344555555555555555433221 33445555544
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=7.4e-12 Score=109.33 Aligned_cols=227 Identities=24% Similarity=0.237 Sum_probs=148.5
Q ss_pred hhhCCCCCcEEecCCCc--c-----c--cCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCccc
Q 009136 86 AIGELHMLKSLDVSFNS--I-----M--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL 156 (542)
Q Consensus 86 ~~~~l~~L~~L~l~~~~--~-----~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~ 156 (542)
.+..+..|++|..++.. + . .+|..+.-..+|+.+.++.|.-..+......-+.|+++......+...+. +
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l 255 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-L 255 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-c
Confidence 34445566666665431 1 1 23444455566666666666554443333344556666555544332211 1
Q ss_pred ccCCCccEEEccCCccc-ccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEE
Q 009136 157 ADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235 (542)
Q Consensus 157 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 235 (542)
-....+.......-... ..-......+..|+++++++|.++.+.+...-.+.++.|+++.|.+..+. .++.+++|..|
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~L 334 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLL 334 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEe
Confidence 11111111111100000 00001133456788899999999888888888899999999999988774 48889999999
Q ss_pred EcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCC--hhhcCcCCCcEEEcCCCccccc
Q 009136 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTL 313 (542)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~ 313 (542)
++++|.++.+..+-.++-++++|.+++|.+..+.-.....+|..+|+++|++..+. ..++.++.|+.+.+.+|++..+
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99999988887777788899999999998887776666677999999999888864 3478899999999999988655
Q ss_pred c
Q 009136 314 R 314 (542)
Q Consensus 314 ~ 314 (542)
.
T Consensus 415 v 415 (490)
T KOG1259|consen 415 V 415 (490)
T ss_pred c
Confidence 4
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.3e-12 Score=115.90 Aligned_cols=200 Identities=18% Similarity=0.183 Sum_probs=132.7
Q ss_pred ecCCcEEEcCCCcccchh--HhhcCCCCCcEEEcCCCCCCc---chHhhhCCCCCcEEecCCCccccCCcc--ccccCCc
Q 009136 44 AVDLQKLILAHNNIEKLK--EDLRNLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFNSIMKIPDE--IGSATAL 116 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~~L 116 (542)
.++|+++.+..+.+...+ +..+.|++++.||++.|-+.. +......+++|+.|+++.|.+...... -..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 567888888887777544 467778888888888876653 333456778888888888776633222 2356778
Q ss_pred cEEEcCCCcCC--cCCccccCCCCCCeEEccCCc-cccCCcccccCCCccEEEccCCcccccch-hhhhccccCcEEEcC
Q 009136 117 VKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIAS 192 (542)
Q Consensus 117 ~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 192 (542)
+.|.+++|.++ ++......+++|+.|++..|. +..-.....-+..|+.|++++|.+.+.+. ...+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 88888888776 333445567788888887774 22222334556778888888877765542 235667778888888
Q ss_pred CcccCcc--ccc-----cCCCCcccEEEccCCCCccCC--CCCcCCCCCcEEEcCCCcCc
Q 009136 193 KNLLNGM--PET-----IGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 193 ~~~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~ 243 (542)
.+.+.++ |.. ...+++|+.|++..|++...+ ..+...++|+.+.+..+.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8877653 222 355788888888888886442 34555667777777776665
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=3.1e-12 Score=111.67 Aligned_cols=133 Identities=27% Similarity=0.326 Sum_probs=103.8
Q ss_pred ccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEE
Q 009136 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212 (542)
Q Consensus 133 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 212 (542)
+..++.|+++|+++|.|+.+.++..-.|.++.|+++.|.+..++. ++.+++|++|++++|.+..+..+-.++-++++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 345677888999999988888888888999999999998888776 778888888888888888777666677788888
Q ss_pred EccCCCCccCCCCCcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCccc
Q 009136 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEY 268 (542)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~ 268 (542)
.+.+|.+..+ ..+..+.+|..|++++|+|..+. ..++++|.|+++.+.+|.+..+
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8888877655 44667778888888888877553 3577777777777777766543
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.6e-12 Score=116.33 Aligned_cols=203 Identities=21% Similarity=0.219 Sum_probs=131.5
Q ss_pred hcCCCCCcEEEcCCCCCCcch--HhhhCCCCCcEEecCCCcccc---CCccccccCCccEEEcCCCcCCcCCcc--ccCC
Q 009136 64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSS--LGRC 136 (542)
Q Consensus 64 l~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~ 136 (542)
=.++..|+...+.++.+...+ .....|++++.||+++|-+.. +-.....+|+|+.|+++.|++...... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 356778888899988887655 367789999999999885553 334456789999999999887743321 2356
Q ss_pred CCCCeEEccCCccc--cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc--cccCCCCcccEE
Q 009136 137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL 212 (542)
Q Consensus 137 ~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L 212 (542)
++|+.|.++.|+++ .+..-+..+|+|+.|.+.+|....+.......+..|++|++++|.+..++ .....++.|..+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 77888888888777 44444666788888888877533333333555666777777777776555 234556667777
Q ss_pred EccCCCCccC--CCC-----CcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCc
Q 009136 213 DLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 213 ~l~~~~~~~~--~~~-----~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~ 266 (542)
++..+.+..+ |+. ....++|+.|++..|++.+++ ..+..+++|+.+.+..+.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777666633 221 234566666666666665442 23444555555555555544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=4e-11 Score=100.49 Aligned_cols=107 Identities=31% Similarity=0.412 Sum_probs=43.9
Q ss_pred ccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
..+++|++.++.++.+..--..+.+|+.|++++|.++.++ .+..++.|++|++++|.++++.......+|+|++|++++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 4578899999999877532224788999999999999886 478899999999999999998765445689999999999
Q ss_pred CCCcccCC-CccCCCCCCceEecCCCcCC
Q 009136 437 NPLRQVPS-DGFKDIPMLQILDLSYNIAS 464 (542)
Q Consensus 437 n~i~~~~~-~~~~~~~~L~~L~l~~n~~~ 464 (542)
|+|.++.. ..+..+++|+.|++.+|.+.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99887654 35678899999999999775
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=3.2e-10 Score=119.27 Aligned_cols=105 Identities=31% Similarity=0.489 Sum_probs=68.7
Q ss_pred ecCCcEEEcCCCc--ccchh-HhhcCCCCCcEEEcCCC-CCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEE
Q 009136 44 AVDLQKLILAHNN--IEKLK-EDLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (542)
Q Consensus 44 ~~~L~~L~l~~~~--~~~l~-~~l~~~~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 119 (542)
+++|++|-+.++. +..++ ..|..++.|++||+++| .+..+|..++.+-+||+|+++++.+.++|..+.++..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 4467777776664 44443 34666777777777754 44567777777777777777777777777777777777777
Q ss_pred EcCCCcCC-cCCccccCCCCCCeEEccCCc
Q 009136 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNC 148 (542)
Q Consensus 120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 148 (542)
++..+... .++.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 77765533 333444447777777776654
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=8.6e-11 Score=115.75 Aligned_cols=217 Identities=27% Similarity=0.381 Sum_probs=145.0
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
+..++.+.++.+.++.+...+..+.+|+.|++.++.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 4567777777777776656677778888888888888776555777888888888888887763 366666788888888
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (542)
|.++.+. .+..++.|+.++++++.+..+... ...+.+++.+.+.+|.+..+.. +.....+..+.+..|.+..+..
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~- 225 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG- 225 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC-
Confidence 8887663 455577888888888887766543 4677888888888887776554 3333344444666666654421
Q ss_pred cCCCC--cccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCc
Q 009136 203 IGSLS--RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 203 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 266 (542)
+.... .|+.+.+.++.+..++..+..+..+..+++.++.+..+.. +...+.+..+....+.+.
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhc
Confidence 11222 3777888888777665666777777778887777664422 333444455555555443
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.4e-10 Score=114.31 Aligned_cols=263 Identities=27% Similarity=0.333 Sum_probs=190.9
Q ss_pred cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCC
Q 009136 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (542)
Q Consensus 45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 124 (542)
+.++.++...+.+.........+..++.+.+..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred chhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc
Confidence 44555555555443222111456777778888888877545678889999999999999988766889999999999999
Q ss_pred cCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccch-hhhhccccCcEEEcCCcccCcccccc
Q 009136 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETI 203 (542)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 203 (542)
.|+.+ ..+..++.|+.|++.+|.+..+. .+..++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+..+. .+
T Consensus 129 ~I~~i-~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~ 204 (414)
T KOG0531|consen 129 KITKL-EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GL 204 (414)
T ss_pred ccccc-cchhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-ch
Confidence 99987 45677778999999999999774 45668999999999999988876 3 477888999999999887654 22
Q ss_pred CCCCcccEEEccCCCCccCCCCCcCCC--CCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEE
Q 009136 204 GSLSRLIRLDLHQNRILSIPSSISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281 (542)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~ 281 (542)
.....+..+++.+|.+..+. .+.... .|+.++++++++..++..+..+..+..+++..+.+...........+..+.
T Consensus 205 ~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~ 283 (414)
T KOG0531|consen 205 DLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELW 283 (414)
T ss_pred HHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhc
Confidence 33444555577777776542 222333 389999999999988777888899999999999888766665555555566
Q ss_pred ccCCCCCCC----Ch-hhcCcCCCcEEEcCCCcccc
Q 009136 282 LSNNSLSGL----PP-EIGKMTTLRKLLLTGNPLRT 312 (542)
Q Consensus 282 l~~~~l~~l----~~-~l~~~~~L~~L~l~~~~~~~ 312 (542)
...+.+... .. .....+.++.+.+..+....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cCcchhcchhhhhccccccccccccccccccCcccc
Confidence 665554431 11 14455667777777776544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6.6e-10 Score=76.47 Aligned_cols=60 Identities=40% Similarity=0.650 Sum_probs=37.6
Q ss_pred ccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCc
Q 009136 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (542)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 462 (542)
|+|++|++++|+++.++...|.++++|++|++++|++..++..+|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666666666666666666666666666666666666666666666666666654
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=3.3e-09 Score=111.74 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=61.5
Q ss_pred CccEEEcCCCcCCcCCccccCCCCCCeEEccCCc--cccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEc
Q 009136 115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC--ITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191 (542)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 191 (542)
..+...+.++.+..++... .+++|++|-+.++. +..++.. |..++.|+.|++++|.--..-+..++.+-+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 3444444444444433222 22245555555553 3333222 444566666666544222222222555555666666
Q ss_pred CCcccCccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCc
Q 009136 192 SKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA 241 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~ 241 (542)
+++.+..+|..+.+++.|.+|++..+... .++.....+++|++|.+....
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 66666666666666666666666654322 223344445666666655443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.4e-09 Score=73.63 Aligned_cols=60 Identities=38% Similarity=0.613 Sum_probs=55.0
Q ss_pred CCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCC
Q 009136 380 GEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (542)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i 439 (542)
|+|++|++++|.++.+|. +|.++++|++|++++|.++.+++..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999999885 688999999999999999999999999999999999999975
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.67 E-value=3.3e-10 Score=110.73 Aligned_cols=172 Identities=26% Similarity=0.313 Sum_probs=110.2
Q ss_pred ecCCcEEEcCCCcccchhHhhcCC-CCCcEEEcCCCCCCcchHhhhC----------CCCCcEEecCCCccccCCccccc
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNL-PLLTVLNVSHNKLSELPAAIGE----------LHMLKSLDVSFNSIMKIPDEIGS 112 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~~~~l~~~~~~----------l~~L~~L~l~~~~~~~l~~~~~~ 112 (542)
+..||+|.+++|++... ..+..+ ..|++|-..+ ....+...|.. ..+|...+++.|.++.+..++.-
T Consensus 108 F~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHH
Confidence 68899999999887642 122211 2344443322 12211111111 23577777777777777777777
Q ss_pred cCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcC
Q 009136 113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192 (542)
Q Consensus 113 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 192 (542)
++.++.|++++|++.... .+..+++|++||++.|.+..+|..-..--+|..|.+++|.++.+.. +.++++|+.|+++
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g--ie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG--IENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh--HHhhhhhhccchh
Confidence 778888888888877664 6777788888888888777666542222347888888887776654 6777778888888
Q ss_pred CcccCcccc--ccCCCCcccEEEccCCCCc
Q 009136 193 KNLLNGMPE--TIGSLSRLIRLDLHQNRIL 220 (542)
Q Consensus 193 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 220 (542)
.|.+....+ .+..+..|+.|.+.||.+.
T Consensus 263 yNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 263 YNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 887755432 2344566777778777765
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.58 E-value=8.4e-08 Score=83.21 Aligned_cols=135 Identities=18% Similarity=0.159 Sum_probs=65.3
Q ss_pred hhhCCCCCcEEecCCCccc-cCC----ccccccCCccEEEcCCCcCCcC-----C---------ccccCCCCCCeEEccC
Q 009136 86 AIGELHMLKSLDVSFNSIM-KIP----DEIGSATALVKFDCSSNQLKEL-----P---------SSLGRCLNLSDFKASN 146 (542)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~~-~l~----~~~~~l~~L~~L~l~~~~~~~~-----~---------~~~~~~~~L~~L~l~~ 146 (542)
++-+|++|+..+||+|.+. ..| +.+++.+.|.+|.+++|.+..+ . +...+-+.|+++.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3445555555555555443 222 2234455555555555544311 1 1122345556666555
Q ss_pred CccccCCc-----ccccCCCccEEEccCCcccccchh-----hhhccccCcEEEcCCcccCc-----cccccCCCCcccE
Q 009136 147 NCITSLPE-----DLADCSKMSKLDVEGNKLTVLSNN-----LIASWTMLTELIASKNLLNG-----MPETIGSLSRLIR 211 (542)
Q Consensus 147 ~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~ 211 (542)
|++...+. .+..-..|+.+.+.+|.|..-+.. .+..+.+|+.|++.+|.++. +..++..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 55543322 122224566666655555432111 13344566666666666532 2234555666777
Q ss_pred EEccCCCCc
Q 009136 212 LDLHQNRIL 220 (542)
Q Consensus 212 L~l~~~~~~ 220 (542)
|.+.+|-++
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 777777554
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.51 E-value=7.6e-08 Score=60.25 Aligned_cols=41 Identities=41% Similarity=0.690 Sum_probs=36.3
Q ss_pred CCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCCC
Q 009136 497 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537 (542)
Q Consensus 497 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~ 537 (542)
++|++|++++|+++.+|..+.+|++|+.|++++|+|+++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999999998889999999999999999998875
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.2e-08 Score=89.51 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=122.7
Q ss_pred CCcEEEcCCCccc--chhHhhcCC-CCCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccc-cCCccccccCCccEE
Q 009136 46 DLQKLILAHNNIE--KLKEDLRNL-PLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKF 119 (542)
Q Consensus 46 ~L~~L~l~~~~~~--~l~~~l~~~-~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L 119 (542)
.+.++.+...-+. .+.+.+..+ ..|+++|+++..++ ++-..++.|++|+.|.+.++.+. .+...+.+..+|+.+
T Consensus 160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 4555555543222 233333333 25888888888777 44556778888888888888776 455567777888888
Q ss_pred EcCCCc-CCcCC--ccccCCCCCCeEEccCCccccC--Cccc-ccCCCccEEEccCCccc--ccc-hhhhhccccCcEEE
Q 009136 120 DCSSNQ-LKELP--SSLGRCLNLSDFKASNNCITSL--PEDL-ADCSKMSKLDVEGNKLT--VLS-NNLIASWTMLTELI 190 (542)
Q Consensus 120 ~l~~~~-~~~~~--~~~~~~~~L~~L~l~~~~~~~l--~~~~-~~~~~L~~L~l~~~~~~--~~~-~~~~~~~~~L~~L~ 190 (542)
+++.+. ++... -.+.+|+.|..|++++|....- ...+ .--++|..|+++|+.-. .-. .-..+.++++.+|+
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 888775 44322 3456788888888888865411 0011 11267888888876422 111 11246788888888
Q ss_pred cCCccc-C-ccccccCCCCcccEEEccCCCCc--cCCCCCcCCCCCcEEEcCCCc
Q 009136 191 ASKNLL-N-GMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNA 241 (542)
Q Consensus 191 l~~~~~-~-~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~ 241 (542)
++++.. + ..-..+.+++.|+++.++.|..- ...-.+...|.|.+|++-++-
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 888754 2 22234667788888888887432 111245677888888877653
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=8.8e-07 Score=91.63 Aligned_cols=89 Identities=27% Similarity=0.343 Sum_probs=54.7
Q ss_pred ccEEECCCCcccc-cChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136 382 ITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (542)
Q Consensus 382 L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 460 (542)
++.|++++|.+.. +|..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++....+..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5566666666553 555666666666666666666655454556666666666666666654444466666666666666
Q ss_pred CcCCCCCCCC
Q 009136 461 NIASLPENPP 470 (542)
Q Consensus 461 n~~~~~~~~~ 470 (542)
|.+++..|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 6665544433
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=9.4e-07 Score=91.40 Aligned_cols=106 Identities=25% Similarity=0.382 Sum_probs=77.0
Q ss_pred cCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHh
Q 009136 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483 (542)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 483 (542)
.++.|++++|.+++..+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|++....+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-------------- 484 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-------------- 484 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--------------
Confidence 367889999988887777788899999999999988765555588889999999999988755444
Q ss_pred hccccCchhhhcCCCCCEEeCCCCccc-ccCccccCC-CCCCEEECCCCc
Q 009136 484 MQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNL-TSLTELDLSDNN 531 (542)
Q Consensus 484 ~~~~~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~-~~L~~L~l~~~~ 531 (542)
.++++++|+.|++++|.++ .+|..+... .++..+++.+|+
T Consensus 485 --------~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 485 --------SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred --------HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 4445566777777777665 456555442 355666666664
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=2.3e-08 Score=77.32 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=55.4
Q ss_pred CCcEEEcCCCcccchhHhh---cCCCCCcEEEcCCCCCCcchHhhh-CCCCCcEEecCCCccccCCccccccCCccEEEc
Q 009136 46 DLQKLILAHNNIEKLKEDL---RNLPLLTVLNVSHNKLSELPAAIG-ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l---~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 121 (542)
.+..+++++|.+..++++. ....+|+..++++|.+.++|..|. ..+.++.+++++|.+..+|..+..++.|+.+++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3555566666655555433 333445555555555555555443 233555555555555555555555555555555
Q ss_pred CCCcCCcCCccccCCCCCCeEEccCCccccCC
Q 009136 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153 (542)
Q Consensus 122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 153 (542)
+.|.+...|+.+..+.++-.|+...+....++
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 55555555544444444444444444444333
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=2.5e-06 Score=80.88 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=51.7
Q ss_pred ccccEEEecCCCCCCCCccccccCCccEEECCCC-cccccChhcccCccCcEEEccCC-cCCCCChhhhhCCCCCcEEEc
Q 009136 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKL 434 (542)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~L 434 (542)
..+++|++++|.+..+|. -+++|++|.+.+| .++.+|..+ .++|++|++++| .+..++ ++|+.|++
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEEe
Confidence 556777777777777762 2456777777775 366666543 246777777776 444332 35666666
Q ss_pred cCCCCcccCCCccCCCCCCceEecCC
Q 009136 435 DNNPLRQVPSDGFKDIPMLQILDLSY 460 (542)
Q Consensus 435 ~~n~i~~~~~~~~~~~~~L~~L~l~~ 460 (542)
.++....+.. -.++|+.|.+.+
T Consensus 120 ~~n~~~~L~~----LPssLk~L~I~~ 141 (426)
T PRK15386 120 KGSATDSIKN----VPNGLTSLSINS 141 (426)
T ss_pred CCCCCccccc----CcchHhheeccc
Confidence 6554433221 124566666643
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.1e-07 Score=83.71 Aligned_cols=213 Identities=19% Similarity=0.209 Sum_probs=118.1
Q ss_pred EEEcCCCcccchh--Hhh-cCCCCCcEEEcCCCCCCcc---hHhhhCCCCCcEEecCCCccccCCccc-cccCCccEEEc
Q 009136 49 KLILAHNNIEKLK--EDL-RNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC 121 (542)
Q Consensus 49 ~L~l~~~~~~~l~--~~l-~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l 121 (542)
.+.+.++.|.... ..| ..+++++.+|+.+|.+... ...+.++++|+.|+++.|.+...-... ....+|+.|-+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 5555666554221 122 3566777777777777633 234567777777777777655322222 23456777777
Q ss_pred CCCcCC--cCCccccCCCCCCeEEccCCccccCC---ccccc-CCCccEEEccCCccccc--chhhhhccccCcEEEcCC
Q 009136 122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP---EDLAD-CSKMSKLDVEGNKLTVL--SNNLIASWTMLTELIASK 193 (542)
Q Consensus 122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~---~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~ 193 (542)
.++.+. .....+..++.++.+.++.|.+..+. ..... -+.++++...+|....- -......++++..+.+-+
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 666543 34445556666777777766443211 01111 13555665555543210 011134456677777777
Q ss_pred cccCccc--cccCCCCcccEEEccCCCCccC--CCCCcCCCCCcEEEcCCCcCcccch-------hccCCCCccEEEcC
Q 009136 194 NLLNGMP--ETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPA-------ELGKLSKLGTLDLH 261 (542)
Q Consensus 194 ~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~L~~L~l~ 261 (542)
|.++... +....++.+-.|++..+++... ...++.++.|..+.++++++.+-.. -++.+++++.|+=+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 7664432 2344455666777777776632 2456778888888888887662211 14566777777543
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=1.9e-08 Score=92.53 Aligned_cols=132 Identities=22% Similarity=0.222 Sum_probs=68.5
Q ss_pred ccCccCcEEEccCC-cCCCCChhhhh-CCCCCcEEEccCCC-CcccCCCcc-CCCCCCceEecCCCcCCCCC--CCCCCC
Q 009136 400 SSCASLQTLILSRN-KIKDWPDAILT-SLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNIASLPE--NPPFSS 473 (542)
Q Consensus 400 ~~~~~L~~L~l~~~-~l~~~~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~-~~~~~L~~L~l~~n~~~~~~--~~~~~~ 473 (542)
.+|..|+.|+.+++ .+++.....++ ++++|+.|.+.+|+ +++.....+ .+++.|+.+++-.+...... ...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 34555666666555 33333222222 35566666666655 332222212 34556666666655332211 111235
Q ss_pred CchhHHHHH--hhccccC-----chhhhcCCCCCEEeCCCCccc--ccCccccCCCCCCEEECCCCc
Q 009136 474 LPHLQELYL--RMQLREA-----PTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNN 531 (542)
Q Consensus 474 ~~~L~~L~l--~~~~~~~-----~~~l~~~~~L~~L~l~~~~l~--~l~~~l~~~~~L~~L~l~~~~ 531 (542)
|+.|+.+.+ |.-++.. ...-.....|..+.+++|+.. ...+.+..|++|+.+++-+|.
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 566666666 2222211 222344677888888888644 335667888888888887774
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.5e-08 Score=84.34 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=107.9
Q ss_pred hhceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhhcCCCCCcEEEcCCCC-CCc--c
Q 009136 10 TSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNK-LSE--L 83 (542)
Q Consensus 10 ~l~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~-~~~--l 83 (542)
.++.+|+|+..|+ .+ ..+... |.+|+.|.+.+..+. .+...+.+..+|+.|+++.|. +++ +
T Consensus 186 Rlq~lDLS~s~it~stl-~~iLs~------------C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL-HGILSQ------------CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred hhHHhhcchhheeHHHH-HHHHHH------------HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH
Confidence 4778888888776 33 222222 667888888887776 445567777888888888764 442 2
Q ss_pred hHhhhCCCCCcEEecCCCccc-c-CCccccc-cCCccEEEcCCCcCC----cCCccccCCCCCCeEEccCCccc--cCCc
Q 009136 84 PAAIGELHMLKSLDVSFNSIM-K-IPDEIGS-ATALVKFDCSSNQLK----ELPSSLGRCLNLSDFKASNNCIT--SLPE 154 (542)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~~~-~-l~~~~~~-l~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~--~l~~ 154 (542)
.--+.+|..|..|+++-|... . +...+.+ -++|+.|++++++-. .+......+++|.+||+++|..- ....
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 335677888888888877554 1 1111111 356778888776422 33334557888888888887432 3334
Q ss_pred ccccCCCccEEEccCCcccccchh---hhhccccCcEEEcCCccc
Q 009136 155 DLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLL 196 (542)
Q Consensus 155 ~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 196 (542)
.+.+++.|++|.++.|..- .+. .+...+.|.+|++.++.-
T Consensus 333 ~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 4677788888888776421 111 156667788888777643
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=5e-09 Score=102.70 Aligned_cols=127 Identities=26% Similarity=0.209 Sum_probs=74.8
Q ss_pred CCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccC
Q 009136 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216 (542)
Q Consensus 137 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 216 (542)
..|...+++.|.+..+...+.-++.++.|+++.|+++... .+..++.|++|+++.|.+..+|..-..-.+|+.|.+.+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 3555666666666666666666667777777776666555 36666677777777776666653211112266666666
Q ss_pred CCCccCCCCCcCCCCCcEEEcCCCcCccc--chhccCCCCccEEEcCCCcCc
Q 009136 217 NRILSIPSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 217 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~ 266 (542)
|.++.+ ..+.++.+|+.|+++.|-+.+. ..-++.+..|+.|++.+|.+-
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666554 3455666666666666655522 122444556666666666554
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.2e-07 Score=81.72 Aligned_cols=199 Identities=19% Similarity=0.195 Sum_probs=131.4
Q ss_pred CCCcEEEcCCCCCCcchH--hh-hCCCCCcEEecCCCcccc---CCccccccCCccEEEcCCCcCCcCCccc-cCCCCCC
Q 009136 68 PLLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLS 140 (542)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~--~~-~~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~ 140 (542)
.-++.+.+.++.+.+... .| ..+++++.+||.+|.++. +...+.++|.|++|+++.|++...-... ....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345566777887775533 33 567899999999998884 4444678999999999999887332333 3556899
Q ss_pred eEEccCCccc--cCCcccccCCCccEEEccCCccc--ccchhhhhccc-cCcEEEcCCcccCccc---cccCCCCcccEE
Q 009136 141 DFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWT-MLTELIASKNLLNGMP---ETIGSLSRLIRL 212 (542)
Q Consensus 141 ~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~L~~L 212 (542)
+|.+.++.+. .....+..+|.++.|.++.|.+. .+++....... .++++.+.+|...... .--.-++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 9999988765 55556778889999999888554 23333333332 5666666666543211 111235667777
Q ss_pred EccCCCCccCC--CCCcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCc
Q 009136 213 DLHQNRILSIP--SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 213 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~ 266 (542)
-+..+.+.... ......+.+.-|+++.+++..++ +++.+++.|..|.++++.+.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 77777666332 34455666667777777777553 45677788888877777654
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=6e-07 Score=78.04 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=17.8
Q ss_pred ccccCCccEEEcCCCcCC-cCC----ccccCCCCCCeEEccCCccc
Q 009136 110 IGSATALVKFDCSSNQLK-ELP----SSLGRCLNLSDFKASNNCIT 150 (542)
Q Consensus 110 ~~~l~~L~~L~l~~~~~~-~~~----~~~~~~~~L~~L~l~~~~~~ 150 (542)
+-+||+|++.++++|-+. +.| ..+.+-+.|.||.+++|++.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 334455555555554443 222 12333444555555554443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=7.7e-08 Score=74.48 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=94.7
Q ss_pred CCCcEEEcCCCCCCcchH---hhhCCCCCcEEecCCCccccCCccccc-cCCccEEEcCCCcCCcCCccccCCCCCCeEE
Q 009136 68 PLLTVLNVSHNKLSELPA---AIGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (542)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~---~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 143 (542)
.-+..++|++|.+-.+++ -+....+|+..+|++|.+..+|..|.. .+.+++|++.+|.++++|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 456778999998876655 456677888999999999999988765 5689999999999999998899999999999
Q ss_pred ccCCccccCCcccccCCCccEEEccCCcccccchh
Q 009136 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178 (542)
Q Consensus 144 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 178 (542)
++.|.+...|.-+..+.++-.|+..++.+..++..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 99999998888888788888999888888877765
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.19 E-value=9.2e-07 Score=71.87 Aligned_cols=59 Identities=19% Similarity=0.452 Sum_probs=21.3
Q ss_pred cccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecC
Q 009136 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (542)
Q Consensus 399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 459 (542)
|.+|.+|+.+.+.. .+..+....|.++++|+.+.+.++ +..++..+|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 34444444444442 344444444444444444444432 444444444444444444443
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=1.2e-07 Score=87.34 Aligned_cols=264 Identities=18% Similarity=0.123 Sum_probs=165.4
Q ss_pred CCcEEEcCCCccc---chhHhhcCCCCCcEEEcCCCCCCc---chHhhhCCCCCcEEecCCC-cccc--CCccccccCCc
Q 009136 46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFN-SIMK--IPDEIGSATAL 116 (542)
Q Consensus 46 ~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~-~~~~--l~~~~~~l~~L 116 (542)
-|++|.++|+.-. .+-....++|++++|++.+|...+ +-..-..|++|++|++..| .++. +-.....|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5888999988654 333445789999999999986432 2223367899999999985 4552 22234568999
Q ss_pred cEEEcCCCc-CC--cCCccccCCCCCCeEEccCCccc---cCCcccccCCCccEEEccCC-cccccchhh-hhccccCcE
Q 009136 117 VKFDCSSNQ-LK--ELPSSLGRCLNLSDFKASNNCIT---SLPEDLADCSKMSKLDVEGN-KLTVLSNNL-IASWTMLTE 188 (542)
Q Consensus 117 ~~L~l~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~-~~~~~~L~~ 188 (542)
++++++.|. +. .+......+.+++.+...+|.-. .+...-+.+.-+..+++..+ .+++.+... -.++..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 999999885 33 23334455666777766665322 22222344555666665555 334433222 344667888
Q ss_pred EEcCCcccC-c--cccccCCCCcccEEEccCCCC-cc--CCCCCcCCCCCcEEEcCCCcCc---ccchhccCCCCccEEE
Q 009136 189 LIASKNLLN-G--MPETIGSLSRLIRLDLHQNRI-LS--IPSSISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLD 259 (542)
Q Consensus 189 L~l~~~~~~-~--~~~~~~~~~~L~~L~l~~~~~-~~--~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~L~~L~ 259 (542)
++.+++... . +..--.+..+|+.+.+.+++. +. +...-.+++.|+.+++.++... .+...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 888876542 1 222235678899999998863 21 1122356888999999988655 2334446788999999
Q ss_pred cCCCc-Ccccchhh-----h-cccccEEEccCCCCCC--CChhhcCcCCCcEEEcCCCc
Q 009136 260 LHSNQ-LKEYCVEA-----C-QLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNP 309 (542)
Q Consensus 260 l~~~~-i~~~~~~~-----~-~~~L~~l~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~ 309 (542)
++.|. +++..... . ...++.+.+++++... ....+..+++|+.+++-++.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 99874 33321111 1 1237888888886543 23346778888888887764
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=4.6e-06 Score=69.49 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=54.8
Q ss_pred CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCcccc-ccCCccEEEcCCCc
Q 009136 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDCSSNQ 125 (542)
Q Consensus 47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~ 125 (542)
=+++++++..+..+..-=.-..+...+|+++|++..+ ..|.+++.|..|.++.|.|+.+...+. .+++|+.|.+.+|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3445555544443322001122344555555555433 244455555555555555555544433 24455555555555
Q ss_pred CCcCC--ccccCCCCCCeEEccCCccccCCc----ccccCCCccEEEcc
Q 009136 126 LKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVE 168 (542)
Q Consensus 126 ~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~l~ 168 (542)
+..+. ..+..|+.|++|.+-+|.+..-.. -+..+++|+.||+.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 54332 223344455555544444442211 13344555555543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=4.4e-06 Score=52.29 Aligned_cols=38 Identities=42% Similarity=0.675 Sum_probs=19.6
Q ss_pred CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc
Q 009136 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l 83 (542)
+|++|++++|.++.+|..+.++++|+.|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555555543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.10 E-value=2.2e-06 Score=69.62 Aligned_cols=101 Identities=19% Similarity=0.427 Sum_probs=57.0
Q ss_pred cccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCC
Q 009136 375 EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453 (542)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L 453 (542)
.+..+.+|+.+.+.+ .+..++. +|.++++|+.+.+.++ +..++..+|..+++|+.+.+.+ .+..++..+|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344566788888775 4556554 5778888888888774 7777777788888888888865 6666777777888888
Q ss_pred ceEecCCCcCCCCCCCCCCCCchhHHH
Q 009136 454 QILDLSYNIASLPENPPFSSLPHLQEL 480 (542)
Q Consensus 454 ~~L~l~~n~~~~~~~~~~~~~~~L~~L 480 (542)
+.+++..+ +..+....|.++ +|+.+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EE
T ss_pred cccccCcc-ccEEchhhhcCC-CceEE
Confidence 88888654 444444445444 34333
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=3.1e-06 Score=87.35 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=64.4
Q ss_pred cCCcEEEcCCCccc--chhHhh-cCCCCCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccccCCccccccCCccEE
Q 009136 45 VDLQKLILAHNNIE--KLKEDL-RNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (542)
Q Consensus 45 ~~L~~L~l~~~~~~--~l~~~l-~~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 119 (542)
.+|+.|+++|...- .-+..+ ..+|.|++|.+.+..+. ++.....++++|.+||+|+++++.+ ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35666666554322 222222 34566666666655444 2223345556666666666666555 445566666666
Q ss_pred EcCCCcCCcCC--ccccCCCCCCeEEccCCccccCC-------cccccCCCccEEEccCCccc
Q 009136 120 DCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLP-------EDLADCSKMSKLDVEGNKLT 173 (542)
Q Consensus 120 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~~ 173 (542)
.+++-.+.... ..++++++|+.||++.......+ +.-..+|+|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66554444221 34555666666666654332111 11223456666665555444
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=8.9e-06 Score=67.84 Aligned_cols=106 Identities=27% Similarity=0.384 Sum_probs=75.1
Q ss_pred cEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCC
Q 009136 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (542)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i 439 (542)
+++++++..+..+...-...-....+++++|++..++. |.+++.|..|.+.+|.|+.+.+..-..+|+|+.|.+.+|.|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 45566665555443311123467788888888877653 67888888888888888888877666778888888888887
Q ss_pred cccCC-CccCCCCCCceEecCCCcCCCC
Q 009136 440 RQVPS-DGFKDIPMLQILDLSYNIASLP 466 (542)
Q Consensus 440 ~~~~~-~~~~~~~~L~~L~l~~n~~~~~ 466 (542)
.++.. ..+..||+|++|.+-+|.+...
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcc
Confidence 65432 3467788888888888876543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=6.7e-06 Score=84.89 Aligned_cols=131 Identities=17% Similarity=0.187 Sum_probs=98.9
Q ss_pred HHHhhceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCccc--chhHhhcCCCCCcEEEcCCCCCCc
Q 009136 7 AARTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSE 82 (542)
Q Consensus 7 ~~~~l~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~ 82 (542)
..++|+.||++|.+.- .=|..+..- +|.|+.|.+++-.+. ++...+.++|+|+.||+++++++.
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~------------LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTM------------LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhh------------CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC
Confidence 3466899999987543 222233332 789999999997765 455677899999999999999998
Q ss_pred chHhhhCCCCCcEEecCCCccccCC--ccccccCCccEEEcCCCcCCcCCc-------cccCCCCCCeEEccCCccc
Q 009136 83 LPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLKELPS-------SLGRCLNLSDFKASNNCIT 150 (542)
Q Consensus 83 l~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~ 150 (542)
+ ..++++++|+.|.+.+=.+..-. ..+-++++|+.||+|.......+. .-..+++||.||.+++.+.
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8 78899999999999875555322 246679999999999876553331 2235889999999998776
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=7.3e-05 Score=71.13 Aligned_cols=73 Identities=14% Similarity=0.273 Sum_probs=40.6
Q ss_pred hcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCC-ccccCCccccccCCccEEEcCCC-cCCcCCccccCCCCCCe
Q 009136 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSD 141 (542)
Q Consensus 64 l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~L~~ 141 (542)
+..+++++.|++++|.++.+| . --.+|++|.+++| .++.+|..+. ++|++|++++| .+..+|. +|++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 445566777777777666665 1 1234777777664 3445554332 46667777666 4444443 3555
Q ss_pred EEccCC
Q 009136 142 FKASNN 147 (542)
Q Consensus 142 L~l~~~ 147 (542)
|++..+
T Consensus 117 L~L~~n 122 (426)
T PRK15386 117 LEIKGS 122 (426)
T ss_pred EEeCCC
Confidence 555443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=9.8e-06 Score=70.96 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=47.4
Q ss_pred CccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCC-CCCCCCchhHHH
Q 009136 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQEL 480 (542)
Q Consensus 402 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L 480 (542)
+.+.++|++++|.++++... ..++.|+.|.|+-|+|+.+.+ +..|++|++|.|+.|.+.++.. ..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic--~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC--EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHHH--HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556667777776665442 566777777777776666543 5666677777776666655432 134456666666
Q ss_pred HH
Q 009136 481 YL 482 (542)
Q Consensus 481 ~l 482 (542)
.|
T Consensus 94 WL 95 (388)
T KOG2123|consen 94 WL 95 (388)
T ss_pred hh
Confidence 66
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=9.9e-06 Score=70.94 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=71.5
Q ss_pred cCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCC-CccCCCCCCceEe
Q 009136 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILD 457 (542)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~ 457 (542)
+.+.++|++.+|+++++.- ...++.|+.|.|+-|+|+.+.+ |..|++|++|.|+.|.|.++.. ..+.++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4578999999999988753 3678999999999999998766 6899999999999999987654 3468899999999
Q ss_pred cCCCcCCCCCC
Q 009136 458 LSYNIASLPEN 468 (542)
Q Consensus 458 l~~n~~~~~~~ 468 (542)
|..|...+..+
T Consensus 95 L~ENPCc~~ag 105 (388)
T KOG2123|consen 95 LDENPCCGEAG 105 (388)
T ss_pred hccCCcccccc
Confidence 99886654433
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=5.8e-05 Score=65.99 Aligned_cols=85 Identities=26% Similarity=0.288 Sum_probs=46.5
Q ss_pred cCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCC--ccc-cCCccccccCCccEEEcCCCcCCcCC--ccccCCCCC
Q 009136 65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNL 139 (542)
Q Consensus 65 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L 139 (542)
..+..|+.+++.++.++++ ..+..+++|++|.++.| .+. .++.....+|+|+++++++|++..+. ..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445555555655555544 34556667777777776 333 34444455677777777777665321 233444455
Q ss_pred CeEEccCCccc
Q 009136 140 SDFKASNNCIT 150 (542)
Q Consensus 140 ~~L~l~~~~~~ 150 (542)
..|++..|...
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 55555555433
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00011 Score=64.32 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=66.4
Q ss_pred ccccCCccEEECCCCcccccChhcccCccCcEEEccCC--cCCC-CChhhhhCCCCCcEEEccCCCCcccCC-CccCCCC
Q 009136 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN--KIKD-WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIP 451 (542)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~--~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~ 451 (542)
......++.+++.++.++.+.. +..+|+|+.|.++.| .+.. +... ...+|+|+++++++|++..+.. ..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhc
Confidence 3344567777777777766543 567888888999888 4443 3332 2456889999998888765332 2356677
Q ss_pred CCceEecCCCcCCCCCC---CCCCCCchhHHHHH
Q 009136 452 MLQILDLSYNIASLPEN---PPFSSLPHLQELYL 482 (542)
Q Consensus 452 ~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 482 (542)
+|..|++.+|..+.... ..|.-+|+|+.++-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 78888888886654221 12344555555544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.83 E-value=0.00037 Score=36.09 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=13.4
Q ss_pred CCCEEECCCCcCCcCCCCCCC
Q 009136 521 SLTELDLSDNNISALPPELVS 541 (542)
Q Consensus 521 ~L~~L~l~~~~l~~lp~~~~~ 541 (542)
+|+.|++++|+|+.+|+++.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356667777766666666543
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00034 Score=71.21 Aligned_cols=171 Identities=22% Similarity=0.195 Sum_probs=100.9
Q ss_pred HHHHHHhhceeeccCC-cccccc-hhhhhccccCCCCCceeeecCCcEEEcCCC-c-cc----chhHhhcCCCCCcEEEc
Q 009136 4 ILKAARTSGSLNLSNR-SLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHN-N-IE----KLKEDLRNLPLLTVLNV 75 (542)
Q Consensus 4 ~~~~~~~l~~l~l~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-~~----~l~~~l~~~~~L~~L~l 75 (542)
+.+.+.+++.+.+.++ .+.+.. ..+... +++|++|+++++ . +. ........+++|+.|++
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 250 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALK------------CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL 250 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhh------------CchhheecccCcccccccchhHhhhhhhhcCCcCccch
Confidence 4445677888888877 455422 122222 789999999873 1 11 12234567799999999
Q ss_pred CCCC-CCcc--hHhhhCCCCCcEEecCCCc-cc--cCCccccccCCccEEEcCCCcCC---cCCccccCCCCCCeEEccC
Q 009136 76 SHNK-LSEL--PAAIGELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASN 146 (542)
Q Consensus 76 ~~~~-~~~l--~~~~~~l~~L~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~ 146 (542)
+.+. +++. ......|++|++|.+..|. ++ .+......+++|++|++++|... .+.....++++++.+.+..
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 9988 5533 2223458999999988776 55 34444567899999999988653 1223344577777765443
Q ss_pred CccccCCcccccCCCccEEEccCCcc---cccchhhhhccccCcEEEcCCcc
Q 009136 147 NCITSLPEDLADCSKMSKLDVEGNKL---TVLSNNLIASWTMLTELIASKNL 195 (542)
Q Consensus 147 ~~~~~l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~ 195 (542)
... +..++.+.+.+... ..........+++++.+.+..+.
T Consensus 331 ~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 331 LNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 321 33444444433221 12222234556666666665554
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.00077 Score=68.60 Aligned_cols=144 Identities=29% Similarity=0.318 Sum_probs=73.6
Q ss_pred cCCccEEECCCCc-ccc--cChhcccCccCcEEEccCCcCC-CC-ChhhhhCCCCCcEEEccCCC--------------C
Q 009136 379 AGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRNKIK-DW-PDAILTSLSSLSCLKLDNNP--------------L 439 (542)
Q Consensus 379 ~~~L~~L~l~~~~-l~~--l~~~~~~~~~L~~L~l~~~~l~-~~-~~~~l~~l~~L~~L~L~~n~--------------i 439 (542)
|++|++|.+.+|. +++ +-.....|++|++|++++|... +. .......+++|+.|.+.... -
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 4556666655554 333 2222345666666666655332 21 11112334444444433221 1
Q ss_pred ---cccCCCccCCCCCCceEecCCCcCCCCC-CCCCCCCchh-HHHHHhhccccCchhhhcCCCCCEEeCCCCcccccC-
Q 009136 440 ---RQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHL-QELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP- 513 (542)
Q Consensus 440 ---~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L-~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~- 513 (542)
..........+++++.+.+..+...... ...+.+|+.| +.+.++-. ....++.|+++.|......
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~---------~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLC---------RSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhc---------cCCccceEecccCccccccc
Confidence 1122223567888888888888754443 2456677777 44333111 1122788888888644321
Q ss_pred -ccccC-CCCCCEEECCCCc
Q 009136 514 -EGFKN-LTSLTELDLSDNN 531 (542)
Q Consensus 514 -~~l~~-~~~L~~L~l~~~~ 531 (542)
..... +.+++.+++.+++
T Consensus 419 l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 419 LRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred hHHHhhhhhccccCCccCcc
Confidence 11111 6777888888775
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.39 E-value=0.0018 Score=30.95 Aligned_cols=17 Identities=47% Similarity=0.841 Sum_probs=8.5
Q ss_pred CCCCEEECCCCcCCcCC
Q 009136 520 TSLTELDLSDNNISALP 536 (542)
Q Consensus 520 ~~L~~L~l~~~~l~~lp 536 (542)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666777777766665
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.27 E-value=0.002 Score=33.33 Aligned_cols=22 Identities=59% Similarity=0.853 Sum_probs=18.4
Q ss_pred CCCEEeCCCCcccccCccccCC
Q 009136 498 QLRILDLSQNSLQSIPEGFKNL 519 (542)
Q Consensus 498 ~L~~L~l~~~~l~~l~~~l~~~ 519 (542)
+|++||+++|+++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999998877654
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.10 E-value=0.0043 Score=33.65 Aligned_cols=23 Identities=52% Similarity=0.834 Sum_probs=18.2
Q ss_pred CCCCCEEECCCCcCCcCCCCCCC
Q 009136 519 LTSLTELDLSDNNISALPPELVS 541 (542)
Q Consensus 519 ~~~L~~L~l~~~~l~~lp~~~~~ 541 (542)
+++|+.|++++|+|+.+|+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888887664
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.10 E-value=0.0043 Score=33.65 Aligned_cols=23 Identities=52% Similarity=0.834 Sum_probs=18.2
Q ss_pred CCCCCEEECCCCcCCcCCCCCCC
Q 009136 519 LTSLTELDLSDNNISALPPELVS 541 (542)
Q Consensus 519 ~~~L~~L~l~~~~l~~lp~~~~~ 541 (542)
+++|+.|++++|+|+.+|+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888887664
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.81 E-value=0.00013 Score=72.31 Aligned_cols=179 Identities=25% Similarity=0.278 Sum_probs=109.6
Q ss_pred hceeeccCCcccccc-hhhhhccccCCCCCceeeecCCcEEEcCCCccc-----chhHhhcCC-CCCcEEEcCCCCCC--
Q 009136 11 SGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNL-PLLTVLNVSHNKLS-- 81 (542)
Q Consensus 11 l~~l~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~-~~L~~L~l~~~~~~-- 81 (542)
+..+++.++.+.+-+ +.+.+.+.. .+.|..|++++|.+. .+...+... ..+++|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t---------~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~ 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKT---------LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcc---------cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc
Confidence 566777777777433 334444444 677888888888776 222334433 45666777777666
Q ss_pred ---cchHhhhCCCCCcEEecCCCccc-----cCCcccc----ccCCccEEEcCCCcCCc-----CCccccCCCC-CCeEE
Q 009136 82 ---ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFK 143 (542)
Q Consensus 82 ---~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~----~l~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~ 143 (542)
.+.+.+....+++.++++.|.+. .++..+. ...++++|++.+|.++. +...+...+. ++.++
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 23446666778888888877654 2222333 35677888888877661 1123344444 66677
Q ss_pred ccCCccccC-----CcccccC-CCccEEEccCCcccccchh----hhhccccCcEEEcCCcccCc
Q 009136 144 ASNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNG 198 (542)
Q Consensus 144 l~~~~~~~l-----~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 198 (542)
+..|.+.+. ...+... ..++++++..|++...... ....+..++++.+..|.+..
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 777766522 2334444 6778888888888754433 24455678888888887743
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.46 E-value=0.0087 Score=28.57 Aligned_cols=17 Identities=59% Similarity=0.870 Sum_probs=11.6
Q ss_pred CCCCEEeCCCCcccccC
Q 009136 497 QQLRILDLSQNSLQSIP 513 (542)
Q Consensus 497 ~~L~~L~l~~~~l~~l~ 513 (542)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 57999999999998875
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.14 E-value=0.00039 Score=68.89 Aligned_cols=174 Identities=28% Similarity=0.328 Sum_probs=126.7
Q ss_pred CcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCcc-----hHhhhCC-CCCcEEecCCCccc-----cCCccc
Q 009136 47 LQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSEL-----PAAIGEL-HMLKSLDVSFNSIM-----KIPDEI 110 (542)
Q Consensus 47 L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~l-----~~~~~~l-~~L~~L~l~~~~~~-----~l~~~~ 110 (542)
+..|.+.+|.+. .+..++...+.|..|++++|.+... ...+... ..+++|++..|.++ .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 788888888776 4567889999999999999998822 2233333 55788888888777 355567
Q ss_pred cccCCccEEEcCCCcCC-----cCCcccc----CCCCCCeEEccCCcccc-----CCcccccCCC-ccEEEccCCccccc
Q 009136 111 GSATALVKFDCSSNQLK-----ELPSSLG----RCLNLSDFKASNNCITS-----LPEDLADCSK-MSKLDVEGNKLTVL 175 (542)
Q Consensus 111 ~~l~~L~~L~l~~~~~~-----~~~~~~~----~~~~L~~L~l~~~~~~~-----l~~~~~~~~~-L~~L~l~~~~~~~~ 175 (542)
.....++.++++.|.+. .+++.+. ...++++|.+++|.++. +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 77889999999999875 2223333 47789999999998762 2223455555 77799999888765
Q ss_pred chhh----hhcc-ccCcEEEcCCcccCc-----cccccCCCCcccEEEccCCCCc
Q 009136 176 SNNL----IASW-TMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL 220 (542)
Q Consensus 176 ~~~~----~~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 220 (542)
.... +... ..+++++++.|.++. +.+.+..++.++.+.++.|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3322 3333 567899999999853 4566777889999999999876
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.01 Score=50.14 Aligned_cols=79 Identities=24% Similarity=0.113 Sum_probs=46.3
Q ss_pred cCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCC-cccCCCcc-CCCCCCceEecCCC-cCCCCCCCCCCCCchhHHH
Q 009136 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL-RQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480 (542)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i-~~~~~~~~-~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L 480 (542)
.++.+|-+++.|...+...+..+++++.|.+.+|.- .+..-+.+ ...++|+.|++++| .+++.+-.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456677777777766666677777777777776652 21111101 13467777777766 5555444455556666666
Q ss_pred HH
Q 009136 481 YL 482 (542)
Q Consensus 481 ~l 482 (542)
.+
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 55
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.97 E-value=0.0014 Score=56.35 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=33.7
Q ss_pred CcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCc
Q 009136 93 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK 171 (542)
Q Consensus 93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 171 (542)
.+.||++.+.+..+...|+.++.+..++++.+++..+|..++....+++++...|+.+..|.+++..+++++++..++.
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 3333443333333333344444444444444444444444444444444444444444444444444444444444443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.19 E-value=0.0028 Score=54.51 Aligned_cols=93 Identities=20% Similarity=0.246 Sum_probs=82.5
Q ss_pred cchh-HhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCC
Q 009136 58 EKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC 136 (542)
Q Consensus 58 ~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 136 (542)
.++| ..+..+..-+.||++.+....+...|+.+..|..|+++.+.+..+|.++.....+.++.+..|..+..|.+++..
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE 110 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence 3555 457788899999999998887777788888999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCccc
Q 009136 137 LNLSDFKASNNCIT 150 (542)
Q Consensus 137 ~~L~~L~l~~~~~~ 150 (542)
+++++++..++.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 99999999998754
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.018 Score=48.72 Aligned_cols=81 Identities=25% Similarity=0.226 Sum_probs=51.4
Q ss_pred CCccEEECCCCcccccC-hhcccCccCcEEEccCC-cCCCCChhhhhC-CCCCcEEEccCCC-CcccCCCccCCCCCCce
Q 009136 380 GEITKLDLSRNSIQELP-PELSSCASLQTLILSRN-KIKDWPDAILTS-LSSLSCLKLDNNP-LRQVPSDGFKDIPMLQI 455 (542)
Q Consensus 380 ~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~-l~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~ 455 (542)
..++.++-+++.+.... +-+..++.++.|.+.+| .+.+...+-+++ .++|+.|++++|+ |++-.-.++..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45677777776654321 23556677777777777 344433333333 4788888888876 66655555677788888
Q ss_pred EecCC
Q 009136 456 LDLSY 460 (542)
Q Consensus 456 L~l~~ 460 (542)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 87764
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.58 E-value=0.084 Score=28.20 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=14.8
Q ss_pred CCCCEEECCCCcCCcCCC
Q 009136 520 TSLTELDLSDNNISALPP 537 (542)
Q Consensus 520 ~~L~~L~l~~~~l~~lp~ 537 (542)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468888888888888887
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.89 E-value=0.18 Score=27.16 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=9.2
Q ss_pred cCcEEEccCCcCCCCChhh
Q 009136 404 SLQTLILSRNKIKDWPDAI 422 (542)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~ 422 (542)
+|+.|++++|.++.++...
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 4445555555554444443
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.89 E-value=0.18 Score=27.16 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=9.2
Q ss_pred cCcEEEccCCcCCCCChhh
Q 009136 404 SLQTLILSRNKIKDWPDAI 422 (542)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~ 422 (542)
+|+.|++++|.++.++...
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 4445555555554444443
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.15 E-value=0.077 Score=27.97 Aligned_cols=16 Identities=50% Similarity=0.540 Sum_probs=7.1
Q ss_pred ccCcEEEccCCcCCCC
Q 009136 403 ASLQTLILSRNKIKDW 418 (542)
Q Consensus 403 ~~L~~L~l~~~~l~~~ 418 (542)
++|++|++++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.11 E-value=0.82 Score=24.61 Aligned_cols=16 Identities=56% Similarity=0.787 Sum_probs=11.2
Q ss_pred CCCCEEECCCCcCCcC
Q 009136 520 TSLTELDLSDNNISAL 535 (542)
Q Consensus 520 ~~L~~L~l~~~~l~~l 535 (542)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777777654
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.64 E-value=0.87 Score=24.44 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=8.6
Q ss_pred CccCcEEEccCC-cCCCC
Q 009136 402 CASLQTLILSRN-KIKDW 418 (542)
Q Consensus 402 ~~~L~~L~l~~~-~l~~~ 418 (542)
|++|++|++++| .+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 345555555555 34443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.86 E-value=1.7 Score=23.88 Aligned_cols=18 Identities=44% Similarity=0.405 Sum_probs=10.6
Q ss_pred ccCcEEEccCCcCCCCCh
Q 009136 403 ASLQTLILSRNKIKDWPD 420 (542)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~ 420 (542)
++|++|+|++|.+++...
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 456666666666655433
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.97 E-value=1.5 Score=43.47 Aligned_cols=63 Identities=33% Similarity=0.274 Sum_probs=39.9
Q ss_pred cCCccEEECCCCcccccC---hhcccCccCcEEEccCC--cCCCCChhhhhCCCCCcEEEccCCCCcc
Q 009136 379 AGEITKLDLSRNSIQELP---PELSSCASLQTLILSRN--KIKDWPDAILTSLSSLSCLKLDNNPLRQ 441 (542)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 441 (542)
.+.+..+++++|++..+. +-.+..|+|+.|+|++| ++....+..=-+...|++|.+.||++.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456777778888765543 33456788888888888 4443222111234567888888888763
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.00 E-value=9 Score=38.29 Aligned_cols=63 Identities=27% Similarity=0.220 Sum_probs=35.7
Q ss_pred cCCCCCcEEEcCCCcCcccc---hhccCCCCccEEEcCCC--cCcccchh--hhcccccEEEccCCCCCC
Q 009136 227 SGCCSLAEFYMGNNALSALP---AELGKLSKLGTLDLHSN--QLKEYCVE--ACQLRLSVLDLSNNSLSG 289 (542)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~--~i~~~~~~--~~~~~L~~l~l~~~~l~~ 289 (542)
.+.+.+..+++++|.+..+. .-....|+|+.|++++| .+...... .....|+++-+.+|+++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34555666666776665432 22334577777777777 33322222 122337778888887766
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=39.70 E-value=1.3e+02 Score=30.00 Aligned_cols=220 Identities=16% Similarity=0.072 Sum_probs=101.9
Q ss_pred CCcEEEcCCCccc-chhHhh---cCCCCCcEEEcCCCCCC--cc--hHhhhCCCCCcEEecCCCccc-----cCCc----
Q 009136 46 DLQKLILAHNNIE-KLKEDL---RNLPLLTVLNVSHNKLS--EL--PAAIGELHMLKSLDVSFNSIM-----KIPD---- 108 (542)
Q Consensus 46 ~L~~L~l~~~~~~-~l~~~l---~~~~~L~~L~l~~~~~~--~l--~~~~~~l~~L~~L~l~~~~~~-----~l~~---- 108 (542)
.+.+++++.+... .+|..+ ..-..+++++.++..++ .+ +.....-++|...+++.+... +++.
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 4677777777655 444332 22345677777776665 12 223455567777777766443 3332
Q ss_pred cccccCCccEEEcCCCcCC--cCCcccc-----CCCCCCeEEccCCccc--cCCcccccCCCccEEEccCCcccccchh-
Q 009136 109 EIGSATALVKFDCSSNQLK--ELPSSLG-----RCLNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNN- 178 (542)
Q Consensus 109 ~~~~l~~L~~L~l~~~~~~--~~~~~~~-----~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~- 178 (542)
.++.-+++ +|++..+... ..+..+- .-+.=-.+++..|... .....-..-..++++....+....-...
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 24445566 7777665443 1111110 0111123444444333 1111122224466666655544322111
Q ss_pred -hhhccccCcEEEcCCcccCcc--ccc--------cCCCCcccEEEccCCCCccCC----CCCcCCCCCcEEEcCCCcCc
Q 009136 179 -LIASWTMLTELIASKNLLNGM--PET--------IGSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 179 -~~~~~~~L~~L~l~~~~~~~~--~~~--------~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~ 243 (542)
.....+..+.+.+.......+ +.. -...--+..+.++.+....-+ .....-+.+.+++++++...
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 122334445554444332110 000 011112444555555544222 12344556777777777655
Q ss_pred c-----cchhccCCCCccEEEcCCCcCc
Q 009136 244 A-----LPAELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 244 ~-----~~~~~~~~~~L~~L~l~~~~i~ 266 (542)
. +|.+......++.+.++.|..+
T Consensus 454 d~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 454 DGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3 3444555556666666666544
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=30.31 E-value=1.5e+02 Score=29.60 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=18.8
Q ss_pred ccEEECCCCcccccCh----hcccCccCcEEEccCCcCCCCC
Q 009136 382 ITKLDLSRNSIQELPP----ELSSCASLQTLILSRNKIKDWP 419 (542)
Q Consensus 382 L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l~~~~l~~~~ 419 (542)
++++.++.|.+..-++ ....-+.+.+|++++|...+.+
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~g 456 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGG 456 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCC
Confidence 4555555554433211 1234455666666666665543
No 94
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=25.64 E-value=44 Score=18.27 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=12.1
Q ss_pred ceeeccCCcccccchhh
Q 009136 12 GSLNLSNRSLRDVPNEV 28 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~ 28 (542)
.++++++.+++++|.++
T Consensus 11 ~~V~C~~~~L~~vP~~l 27 (28)
T PF01462_consen 11 LTVDCSGRGLTAVPSDL 27 (28)
T ss_dssp TEEEETTSS-SSS-STS
T ss_pred CEeECCCCCCCccCCCC
Confidence 56889999999888764
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.28 E-value=53 Score=40.28 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=18.8
Q ss_pred ECCCCcccccCh-hcccCccCcEEEccCCcCC
Q 009136 386 DLSRNSIQELPP-ELSSCASLQTLILSRNKIK 416 (542)
Q Consensus 386 ~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~ 416 (542)
+|++|+|+.|+. .|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 355666666665 3556666666666666543
Done!