Query 009136
Match_columns 542
No_of_seqs 237 out of 3139
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 19:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-49 2.4E-53 408.7 32.3 471 12-533 14-558 (606)
2 3rgz_A Protein brassinosteroid 100.0 9E-49 3.1E-53 416.6 32.4 510 4-538 121-723 (768)
3 3rgz_A Protein brassinosteroid 100.0 4.6E-49 1.6E-53 418.8 29.6 510 5-541 96-702 (768)
4 3t6q_A CD180 antigen; protein- 100.0 1.6E-47 5.3E-52 398.6 38.9 473 12-533 15-560 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-46 1.1E-50 393.8 42.9 503 12-538 7-602 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 7.6E-46 2.6E-50 391.0 37.8 478 9-533 25-622 (680)
7 2z63_A TOLL-like receptor 4, v 100.0 1.6E-45 5.5E-50 381.0 30.5 473 11-537 9-536 (570)
8 3vq2_A TLR4, TOLL-like recepto 100.0 7.5E-46 2.6E-50 385.9 27.5 450 9-511 32-559 (606)
9 3t6q_A CD180 antigen; protein- 100.0 5.9E-45 2E-49 379.2 33.8 480 46-538 13-541 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-43 8.6E-48 378.6 36.2 469 12-539 7-545 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-43 7.9E-48 362.9 27.2 464 11-533 7-510 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 1.3E-42 4.3E-47 359.3 27.5 454 9-511 28-532 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 1E-42 3.5E-47 373.8 27.4 467 9-533 24-560 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-42 5.9E-47 353.6 24.9 445 12-533 3-481 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-41 6.3E-46 348.7 27.6 456 44-539 4-492 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 1.8E-40 6.2E-45 349.8 31.4 419 45-537 323-844 (876)
17 4ecn_A Leucine-rich repeat pro 100.0 1.5E-40 5.3E-45 350.4 28.0 295 9-317 323-716 (876)
18 4eco_A Uncharacterized protein 100.0 3.6E-40 1.2E-44 342.5 29.6 412 45-536 81-603 (636)
19 4eco_A Uncharacterized protein 100.0 2.3E-40 7.9E-45 343.9 27.7 415 9-468 81-604 (636)
20 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-39 4.5E-44 341.5 33.6 474 12-533 34-580 (635)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-40 1.1E-44 339.5 23.7 446 45-533 31-510 (562)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-40 9.8E-45 337.2 21.9 423 9-511 21-482 (520)
23 1jl5_A Outer protein YOPM; leu 100.0 2.6E-37 8.9E-42 306.9 28.0 405 44-534 10-430 (454)
24 1jl5_A Outer protein YOPM; leu 100.0 4.9E-37 1.7E-41 305.0 26.4 405 8-510 10-429 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.6E-38 3.3E-42 321.0 21.9 441 9-510 31-510 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-36 1.3E-40 315.2 29.8 475 47-540 33-562 (635)
27 1o6v_A Internalin A; bacterial 100.0 3.2E-35 1.1E-39 294.9 34.2 348 67-514 45-392 (466)
28 1o6v_A Internalin A; bacterial 100.0 3.8E-35 1.3E-39 294.4 34.1 346 44-466 45-390 (466)
29 3v47_A TOLL-like receptor 5B a 100.0 1.8E-34 6E-39 289.5 31.4 380 47-534 12-409 (455)
30 3v47_A TOLL-like receptor 5B a 100.0 6.5E-35 2.2E-39 292.7 27.7 371 12-465 13-409 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-34 7.3E-39 286.3 27.2 361 44-528 41-407 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 7.7E-34 2.6E-38 282.3 29.2 355 5-471 38-394 (457)
33 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5E-37 265.2 31.8 306 65-464 41-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 2.4E-32 8.1E-37 263.7 30.5 304 43-440 42-346 (347)
35 2id5_A Lingo-1, leucine rich r 100.0 1.2E-30 4.2E-35 262.9 28.2 237 12-263 14-258 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 7.2E-31 2.5E-35 257.3 25.6 129 45-173 45-178 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 1.9E-30 6.6E-35 261.5 29.0 315 116-510 13-333 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 7.1E-31 2.4E-35 257.4 24.0 306 135-533 43-352 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1.2E-29 4.3E-34 261.9 26.1 303 68-440 51-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 1.2E-29 4E-34 262.1 24.1 305 136-533 50-358 (597)
41 1z7x_W Ribonuclease inhibitor; 100.0 6.3E-31 2.1E-35 264.2 11.0 248 9-268 3-299 (461)
42 2ft3_A Biglycan; proteoglycan, 100.0 6.4E-29 2.2E-33 237.7 24.3 284 115-462 34-331 (332)
43 1xku_A Decorin; proteoglycan, 100.0 1.5E-28 5.1E-33 235.1 25.4 280 10-309 32-330 (330)
44 1xku_A Decorin; proteoglycan, 100.0 3.2E-28 1.1E-32 232.8 27.3 285 92-462 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-28 5.3E-33 235.1 23.1 279 10-309 34-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-30 3.7E-35 262.5 3.7 372 91-533 3-440 (461)
47 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-26 2.5E-30 231.3 28.3 260 9-313 40-299 (622)
48 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-25 5.7E-30 228.7 25.9 267 46-426 41-307 (622)
49 3ogk_B Coronatine-insensitive 99.9 8.4E-28 2.9E-32 249.4 7.9 132 135-266 162-306 (592)
50 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-26 7.4E-31 217.7 15.0 241 45-286 50-302 (313)
51 2z66_A Variable lymphocyte rec 99.9 1.9E-25 6.6E-30 211.1 20.7 241 12-267 10-262 (306)
52 1ogq_A PGIP-2, polygalacturona 99.9 5.8E-26 2E-30 214.7 15.3 240 68-309 50-302 (313)
53 2z80_A TOLL-like receptor 2, v 99.9 1.1E-25 3.7E-30 217.3 16.7 265 13-312 35-315 (353)
54 4fcg_A Uncharacterized protein 99.9 1.7E-25 5.9E-30 212.7 17.4 223 45-268 81-316 (328)
55 4fcg_A Uncharacterized protein 99.9 2.4E-25 8.3E-30 211.7 18.0 222 66-288 79-314 (328)
56 2z80_A TOLL-like receptor 2, v 99.9 3.4E-25 1.2E-29 213.8 18.4 172 96-269 36-214 (353)
57 3ogk_B Coronatine-insensitive 99.9 8.8E-26 3E-30 234.2 12.8 428 2-461 66-548 (592)
58 1ozn_A Reticulon 4 receptor; N 99.9 2E-24 6.8E-29 201.9 19.7 218 13-267 15-239 (285)
59 2z66_A Variable lymphocyte rec 99.9 1.4E-24 4.7E-29 205.3 18.5 243 47-312 9-262 (306)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.8E-25 2E-29 205.5 15.8 200 9-220 32-238 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 9.7E-24 3.3E-28 209.8 23.1 238 12-266 46-292 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-24 5.1E-29 205.7 16.2 236 11-266 12-250 (317)
63 3zyi_A Leucine-rich repeat-con 99.9 1.2E-23 3.9E-28 210.1 22.6 238 12-266 57-303 (452)
64 1wwl_A Monocyte differentiatio 99.9 3.1E-25 1.1E-29 209.9 10.3 245 40-289 38-310 (312)
65 3zyj_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 205.7 24.8 122 116-239 45-169 (440)
66 2p1m_B Transport inhibitor res 99.9 2.1E-26 7.2E-31 239.0 1.4 384 44-464 65-519 (594)
67 2p1m_B Transport inhibitor res 99.9 1.6E-25 5.5E-30 232.4 7.4 215 44-260 104-345 (594)
68 3zyi_A Leucine-rich repeat-con 99.9 5.5E-23 1.9E-27 205.2 24.9 224 160-464 75-303 (452)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-24 5.8E-29 205.3 10.0 253 46-306 11-270 (317)
70 1wwl_A Monocyte differentiatio 99.9 2E-24 6.8E-29 204.3 8.6 243 65-312 40-310 (312)
71 2z62_A TOLL-like receptor 4, v 99.9 1.6E-22 5.3E-27 188.0 20.1 217 12-243 10-237 (276)
72 3oja_A Leucine-rich immune mol 99.9 1.3E-22 4.5E-27 203.4 18.2 230 20-266 18-250 (487)
73 3oja_A Leucine-rich immune mol 99.9 5.1E-23 1.7E-27 206.3 13.3 222 59-288 21-250 (487)
74 1p9a_G Platelet glycoprotein I 99.9 1.1E-21 3.9E-26 182.7 20.5 198 40-240 5-205 (290)
75 1p9a_G Platelet glycoprotein I 99.9 1.8E-21 6E-26 181.5 19.1 197 8-220 9-208 (290)
76 1h6u_A Internalin H; cell adhe 99.9 3.3E-21 1.1E-25 181.6 20.3 196 44-248 40-235 (308)
77 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.6E-26 184.2 17.7 214 47-270 21-234 (308)
78 2o6q_A Variable lymphocyte rec 99.9 2.6E-21 8.9E-26 178.9 18.1 134 378-533 83-218 (270)
79 2o6q_A Variable lymphocyte rec 99.9 4.8E-21 1.6E-25 177.1 19.2 196 46-243 17-218 (270)
80 2z62_A TOLL-like receptor 4, v 99.9 4.4E-21 1.5E-25 178.2 18.8 218 48-267 10-238 (276)
81 2xwt_C Thyrotropin receptor; s 99.9 3.5E-21 1.2E-25 174.7 14.4 192 69-263 32-236 (239)
82 3rfs_A Internalin B, repeat mo 99.9 1E-21 3.4E-26 181.8 10.6 136 377-540 106-243 (272)
83 2xwt_C Thyrotropin receptor; s 99.9 1.3E-20 4.5E-25 170.9 16.7 193 45-241 31-237 (239)
84 3m19_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 169.5 16.0 177 357-535 14-194 (251)
85 3rfs_A Internalin B, repeat mo 99.8 3.3E-20 1.1E-24 171.6 15.2 181 357-539 41-224 (272)
86 2ca6_A RAN GTPase-activating p 99.8 2.6E-21 8.9E-26 189.0 7.9 226 44-269 31-319 (386)
87 2ca6_A RAN GTPase-activating p 99.8 3E-21 1E-25 188.6 8.0 244 46-289 10-317 (386)
88 3goz_A Leucine-rich repeat-con 99.8 7.6E-21 2.6E-25 183.7 8.9 244 13-268 2-299 (362)
89 3goz_A Leucine-rich repeat-con 99.8 7.1E-21 2.4E-25 183.9 6.9 115 381-510 168-297 (362)
90 2ast_B S-phase kinase-associat 99.8 2.1E-20 7.1E-25 179.2 8.7 241 47-290 49-308 (336)
91 4glp_A Monocyte differentiatio 99.8 1.2E-19 4.1E-24 171.4 13.3 195 68-265 91-306 (310)
92 4glp_A Monocyte differentiatio 99.8 5.5E-20 1.9E-24 173.7 10.4 198 44-244 90-308 (310)
93 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.9E-23 162.6 16.6 167 44-218 45-211 (291)
94 3m19_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 158.0 17.5 171 11-196 16-191 (251)
95 3cvr_A Invasion plasmid antige 99.8 1.4E-18 4.9E-23 175.2 18.1 185 46-251 60-252 (571)
96 2ast_B S-phase kinase-associat 99.8 1.1E-19 3.6E-24 174.3 9.3 246 10-271 48-311 (336)
97 1h6t_A Internalin B; cell adhe 99.8 4E-18 1.4E-22 158.9 18.5 175 5-200 42-216 (291)
98 3cvr_A Invasion plasmid antige 99.8 2.7E-18 9.1E-23 173.3 17.7 180 68-268 59-245 (571)
99 2o6s_A Variable lymphocyte rec 99.8 6.9E-19 2.4E-23 155.8 10.0 175 359-541 9-187 (208)
100 4ay9_X Follicle-stimulating ho 99.8 3.9E-18 1.3E-22 163.8 16.1 232 12-262 12-255 (350)
101 4ay9_X Follicle-stimulating ho 99.8 5.6E-18 1.9E-22 162.7 16.9 234 48-307 12-255 (350)
102 3e6j_A Variable lymphocyte rec 99.8 4.2E-18 1.4E-22 152.8 13.1 152 358-534 20-173 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 1.5E-17 5E-22 148.2 15.9 150 359-532 13-164 (220)
104 1xeu_A Internalin C; cellular 99.8 8.7E-18 3E-22 154.0 14.6 172 7-200 17-188 (263)
105 1xeu_A Internalin C; cellular 99.7 1.1E-18 3.9E-23 159.9 7.7 170 359-539 21-191 (263)
106 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.4E-22 169.1 16.6 171 44-222 42-212 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-17 8.1E-22 146.8 15.1 151 359-533 13-166 (220)
108 4ezg_A Putative uncharacterize 99.7 1.2E-18 4.2E-23 152.6 6.2 151 379-534 43-195 (197)
109 2xot_A Amphoterin-induced prot 99.7 4E-18 1.4E-22 164.4 8.9 173 359-533 20-202 (361)
110 1m9s_A Internalin B; cell inva 99.7 7.3E-17 2.5E-21 164.8 17.8 175 5-200 39-213 (605)
111 2o6s_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 144.7 12.4 156 382-539 9-167 (208)
112 3e6j_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 143.1 14.7 147 12-173 22-172 (229)
113 4fs7_A Uncharacterized protein 99.7 1.1E-15 3.8E-20 149.2 21.0 328 57-479 59-392 (394)
114 4fs7_A Uncharacterized protein 99.7 4.6E-16 1.6E-20 151.9 18.2 101 377-482 273-373 (394)
115 2v9t_B SLIT homolog 2 protein 99.7 1.8E-16 6E-21 141.2 13.9 147 12-173 14-165 (220)
116 2xot_A Amphoterin-induced prot 99.7 1E-16 3.4E-21 154.6 12.8 170 12-196 21-201 (361)
117 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.8E-21 138.9 13.0 148 90-241 43-192 (197)
118 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-16 7E-21 140.8 13.4 147 12-173 14-166 (220)
119 3sb4_A Hypothetical leucine ri 99.7 1.3E-16 4.4E-21 151.9 10.8 100 379-480 225-326 (329)
120 3sb4_A Hypothetical leucine ri 99.7 1.6E-16 5.5E-21 151.2 10.6 100 357-458 226-328 (329)
121 1dce_A Protein (RAB geranylger 99.7 3.7E-18 1.3E-22 173.3 -0.8 193 42-237 346-567 (567)
122 1dce_A Protein (RAB geranylger 99.7 2.4E-18 8.3E-23 174.7 -2.5 194 64-260 345-567 (567)
123 4fdw_A Leucine rich hypothetic 99.6 1.9E-14 6.5E-19 139.6 22.6 249 159-475 112-369 (401)
124 2ell_A Acidic leucine-rich nuc 99.6 3.9E-16 1.3E-20 132.9 9.4 138 379-539 23-166 (168)
125 4fdw_A Leucine rich hypothetic 99.6 3.5E-15 1.2E-19 144.8 15.8 261 227-533 110-383 (401)
126 4gt6_A Cell surface protein; l 99.6 3.6E-14 1.2E-18 138.5 21.4 130 398-532 260-390 (394)
127 4b8c_D Glucose-repressible alc 99.6 6.7E-16 2.3E-20 161.8 7.7 196 9-217 173-369 (727)
128 2ell_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 127.3 9.4 130 69-199 25-162 (168)
129 2wfh_A SLIT homolog 2 protein 99.6 2.1E-14 7.3E-19 124.6 14.5 128 359-510 12-139 (193)
130 1w8a_A SLIT protein; signaling 99.6 1.3E-14 4.6E-19 126.0 13.1 128 359-510 10-139 (192)
131 2wfh_A SLIT homolog 2 protein 99.6 2.5E-14 8.7E-19 124.2 14.7 111 355-465 29-140 (193)
132 4gt6_A Cell surface protein; l 99.6 8E-14 2.7E-18 136.0 18.3 130 375-508 260-389 (394)
133 2je0_A Acidic leucine-rich nuc 99.6 4.2E-15 1.4E-19 123.6 7.8 122 45-167 17-147 (149)
134 2o6r_A Variable lymphocyte rec 99.6 6.4E-14 2.2E-18 120.2 15.1 103 360-464 10-113 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.6 5E-15 1.7E-19 126.9 7.8 134 40-174 14-154 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 5.6E-15 1.9E-19 126.6 8.1 135 376-533 15-153 (176)
137 1w8a_A SLIT protein; signaling 99.6 4E-14 1.4E-18 123.0 13.4 111 355-465 27-140 (192)
138 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.5E-19 120.6 8.4 125 67-192 16-148 (149)
139 2o6r_A Variable lymphocyte rec 99.5 4.6E-13 1.6E-17 114.8 14.8 127 382-510 9-137 (177)
140 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.4E-19 151.5 4.8 190 45-240 173-369 (727)
141 1ds9_A Outer arm dynein; leuci 99.4 5.3E-15 1.8E-19 129.4 -2.4 127 46-174 24-154 (198)
142 4h09_A Hypothetical leucine ri 99.4 1.5E-11 5.2E-16 119.4 21.7 102 378-482 238-340 (379)
143 4h09_A Hypothetical leucine ri 99.4 5.8E-11 2E-15 115.3 24.5 98 375-475 258-356 (379)
144 1ds9_A Outer arm dynein; leuci 99.4 1.7E-14 5.9E-19 126.2 -2.1 117 79-197 36-153 (198)
145 3g39_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 108.1 11.7 106 358-465 10-116 (170)
146 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 105.1 12.9 106 381-510 10-115 (170)
147 2r9u_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 106.4 11.9 105 359-465 14-119 (174)
148 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 105.4 12.9 108 381-512 13-120 (174)
149 3un9_A NLR family member X1; l 99.3 1.8E-12 6.3E-17 124.4 3.6 153 45-197 72-252 (372)
150 3un9_A NLR family member X1; l 99.2 7.4E-13 2.5E-17 127.2 0.7 164 354-535 69-254 (372)
151 2ifg_A High affinity nerve gro 99.0 7.2E-10 2.5E-14 106.1 11.0 104 360-465 11-117 (347)
152 2ifg_A High affinity nerve gro 99.0 1.2E-09 4.1E-14 104.5 10.7 98 383-482 11-110 (347)
153 2ra8_A Uncharacterized protein 98.8 1.1E-08 3.7E-13 97.3 8.7 177 45-243 107-320 (362)
154 1io0_A Tropomodulin; LRR prote 98.8 4E-09 1.4E-13 90.4 4.5 107 44-150 35-164 (185)
155 1io0_A Tropomodulin; LRR prote 98.7 9.8E-09 3.4E-13 88.0 6.1 117 59-175 27-166 (185)
156 2ra8_A Uncharacterized protein 98.7 3.4E-09 1.2E-13 100.7 2.6 155 357-533 139-320 (362)
157 3e4g_A ATP synthase subunit S, 98.3 1.4E-07 4.9E-12 78.3 1.8 84 379-462 60-150 (176)
158 3e4g_A ATP synthase subunit S, 98.2 2.3E-07 7.9E-12 77.1 0.5 95 394-510 52-153 (176)
159 3rw6_A Nuclear RNA export fact 98.0 2.9E-06 9.8E-11 76.3 3.6 78 88-166 167-257 (267)
160 1pgv_A TMD-1, tropomodulin TMD 98.0 5.2E-06 1.8E-10 70.3 4.5 106 44-149 40-169 (197)
161 3rw6_A Nuclear RNA export fact 97.9 6.2E-06 2.1E-10 74.1 3.5 78 379-457 169-257 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 2.3E-05 7.8E-10 66.4 6.1 115 59-173 32-170 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0012 4.2E-08 52.0 6.2 55 384-440 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.00093 3.2E-08 52.8 4.7 55 12-81 11-68 (130)
165 2lz0_A Uncharacterized protein 91.7 0.2 7E-06 36.9 4.4 49 412-461 5-53 (100)
166 2lz0_A Uncharacterized protein 88.3 0.19 6.4E-06 37.1 1.7 47 435-482 4-50 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.1e-49 Score=408.71 Aligned_cols=471 Identities=21% Similarity=0.222 Sum_probs=370.8
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (542)
+.+++++++++++|.++. +++++|++++|.+..++. +|.++++|++|++++|.++.+ |.+|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~ 78 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78 (606)
T ss_dssp TEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc
Confidence 579999999999998774 469999999999997764 899999999999999999987 558999
Q ss_pred CCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccc--cCCcccccCCCccEE
Q 009136 90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSKL 165 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L 165 (542)
+++|++|++++|.++.+ |..|.++++|++|++++|.+..++ ..+.++++|++|++++|.+. .+|..++.+++|++|
T Consensus 79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 99999999999999977 778999999999999999998776 67899999999999999988 478889999999999
Q ss_pred EccCCcccccchhhhhccccCc----EEEcCCcccCccccccCCCCcccEEEccCCCCc--cCCCC--------------
Q 009136 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSS-------------- 225 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~-------------- 225 (542)
++++|.+..+....++.+.+++ ++++++|.++.++.......+|+.+++++|.+. ..+..
T Consensus 159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp ECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred EccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 9999999988877777777665 799999999888766555568999999888653 11111
Q ss_pred ------------------------------------------CcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCC
Q 009136 226 ------------------------------------------ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (542)
Q Consensus 226 ------------------------------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 263 (542)
+..+++|+.++++++.+..+| .+..+++|++|++++|
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC 317 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC
T ss_pred cccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccc
Confidence 344556666666666666555 5556666666666666
Q ss_pred cCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCcccccc
Q 009136 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343 (542)
Q Consensus 264 ~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (542)
.+..++.. ....|+.+++++|..... ..+..+++|+.+++++|.+......
T Consensus 318 ~l~~lp~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~--------------------------- 368 (606)
T 3vq2_A 318 QLKQFPTL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCC--------------------------- 368 (606)
T ss_dssp CCSSCCCC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEEC---------------------------
T ss_pred cCcccccC-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcch---------------------------
Confidence 66555533 334466666666632221 1344566666666666655433100
Q ss_pred chhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChh
Q 009136 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA 421 (542)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~ 421 (542)
.......+.+++++++++.+..++..+..+++|++|++++|.+..++. .+..+++|++|++++|.+++..+.
T Consensus 369 ------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 369 ------SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp ------CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ------hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 011223467889999999888888778888999999999998877543 678889999999999998888777
Q ss_pred hhhCCCCCcEEEccCCCCcc-cCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccC-chhhhcCCC
Q 009136 422 ILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQ 498 (542)
Q Consensus 422 ~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~l~~~~~ 498 (542)
.+..+++|++|++++|++.+ +.+..+..+++|++|++++|+++...+..+..+++|++|++ .+.+..+ |..+..+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 88889999999999998876 34566888999999999999998888888889999999999 6667655 777888999
Q ss_pred CCEEeCCCCcccccCccccCCC-CCCEEECCCCcCC
Q 009136 499 LRILDLSQNSLQSIPEGFKNLT-SLTELDLSDNNIS 533 (542)
Q Consensus 499 L~~L~l~~~~l~~l~~~l~~~~-~L~~L~l~~~~l~ 533 (542)
|+.|++++|+++.+|..+..++ +|+.|++++|++.
T Consensus 523 L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 9999999999998888888887 5999999999876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9e-49 Score=416.57 Aligned_cols=510 Identities=29% Similarity=0.321 Sum_probs=346.0
Q ss_pred HHHHHHhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHh---hcCCCCCcEEEcCCC
Q 009136 4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KED---LRNLPLLTVLNVSHN 78 (542)
Q Consensus 4 ~~~~~~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~---l~~~~~L~~L~l~~~ 78 (542)
.+..++++++|+++++.+. .+|..++.. +++|++|++++|.+... +.. +.++++|++|++++|
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLK------------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCC------------CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhcc------------CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 4667788999999999876 344433222 67788888888888743 334 677788888888877
Q ss_pred CCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCccccCCcccc
Q 009136 79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLA 157 (542)
Q Consensus 79 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~ 157 (542)
.+.... .+..+++|++|++++|.+...++.+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.......
T Consensus 189 ~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~- 266 (768)
T 3rgz_A 189 KISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 266 (768)
T ss_dssp EEESCC-BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-
T ss_pred cccccC-CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-
Confidence 766432 236677777777777777754334777777777777777776 45566777777777777777766332222
Q ss_pred cCCCccEEEccCCccc-ccchhhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCc-cCCCC-CcCCCCCc
Q 009136 158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSS-ISGCCSLA 233 (542)
Q Consensus 158 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~-~~~~~~L~ 233 (542)
.+++|++|++++|.+. .++......+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 5666777777766665 333332233466777777766664 45566666666777777766665 45543 56666667
Q ss_pred EEEcCCCcCc-ccchhccCCC-CccEEEcCCCcCccc-chhhh---cccccEEEccCCCCCC-CChhhcCcCCCcEEEcC
Q 009136 234 EFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKEY-CVEAC---QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLT 306 (542)
Q Consensus 234 ~l~l~~~~~~-~~~~~~~~~~-~L~~L~l~~~~i~~~-~~~~~---~~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~ 306 (542)
+|++++|.+. .+|..+..++ +|++|++++|.+... +.... ...|+.+++++|.+++ +|..+..+++|+.|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 7777666665 5566555555 666666666665532 22211 1236666666665553 55556666666666666
Q ss_pred CCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCCccccccCCccEE
Q 009136 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKL 385 (542)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L 385 (542)
+|.+.......+... ..+.......... ...........++++++++++|.+. .+|..+..+++|++|
T Consensus 427 ~N~l~~~~p~~l~~l---------~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSL---------SKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp SSEEESCCCGGGGGC---------TTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCcccCcccHHHhcC---------CCCCEEECCCCcc--cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 665543221111100 0000000000000 0000011223467889999999887 677788888999999
Q ss_pred ECCCCccc-ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcc-cCC-------------------
Q 009136 386 DLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPS------------------- 444 (542)
Q Consensus 386 ~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~------------------- 444 (542)
++++|.++ .+|.++..+++|++|++++|.+++..+..+..+++|++|++++|++.. ++.
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 99999887 578888889999999999999987777778899999999999887652 211
Q ss_pred --------------------------------------------------CccCCCCCCceEecCCCcCCCCCCCCCCCC
Q 009136 445 --------------------------------------------------DGFKDIPMLQILDLSYNIASLPENPPFSSL 474 (542)
Q Consensus 445 --------------------------------------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 474 (542)
..+..+++|+.|++++|++++..|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 124456789999999999999899999999
Q ss_pred chhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCCccc-ccCccccCCCCCCEEECCCCcCC-cCCCC
Q 009136 475 PHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPE 538 (542)
Q Consensus 475 ~~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~-~lp~~ 538 (542)
++|+.|++ .+.+. .+|..++.+++|+.||+++|+++ .+|..+..+++|+.|++++|+++ .+|+.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999 77776 88999999999999999999998 67999999999999999999998 46653
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.6e-49 Score=418.84 Aligned_cols=510 Identities=26% Similarity=0.327 Sum_probs=410.4
Q ss_pred HHHHHhhceeeccCCccc-ccch--hhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhh-cCCCCCcEEEcCCCC
Q 009136 5 LKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSHNK 79 (542)
Q Consensus 5 ~~~~~~l~~l~l~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l-~~~~~L~~L~l~~~~ 79 (542)
+..++++++||++++.+. .+|. .+.. +++|++|++++|.+. .+|..+ .++++|++|++++|.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-------------l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGS-------------CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGG-------------CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhC-------------CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 456688999999999987 4555 4433 789999999999887 445444 789999999999999
Q ss_pred CCcc-hHh---hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccc-cCCc
Q 009136 80 LSEL-PAA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPE 154 (542)
Q Consensus 80 ~~~l-~~~---~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~ 154 (542)
+... +.. +.++++|++|++++|.+..... +..+++|++|++++|.+......+.++++|++|++++|.+. .++.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 9865 334 7899999999999999886543 38899999999999999865555999999999999999998 5677
Q ss_pred ccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccC-ccccccCCC-CcccEEEccCCCCc-cCCCCCcCCCC
Q 009136 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCS 231 (542)
Q Consensus 155 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~-~~~~~~~~~~~ 231 (542)
.+..+++|++|++++|.+....+. ..+++|++|++++|.+. .+|..+... ++|+.|++++|.+. .+|..+..+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 899999999999999998754443 28899999999999997 788777665 99999999999988 67888999999
Q ss_pred CcEEEcCCCcCc-ccchh-ccCCCCccEEEcCCCcCc-ccchhhhc--ccccEEEccCCCCCC-CChhhcC--cCCCcEE
Q 009136 232 LAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGK--MTTLRKL 303 (542)
Q Consensus 232 L~~l~l~~~~~~-~~~~~-~~~~~~L~~L~l~~~~i~-~~~~~~~~--~~L~~l~l~~~~l~~-l~~~l~~--~~~L~~L 303 (542)
|+.|++++|.+. .+|.. +..+++|++|++++|.++ .++..... ..|+.+++++|.+++ ++..+.. +++|+.|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 999999999998 77765 899999999999999987 44444433 269999999998875 5555555 7899999
Q ss_pred EcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCCccccccCCc
Q 009136 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEI 382 (542)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L 382 (542)
++++|.+.......+... ..+........... ..........++++++++++|.+. .+|..+..+++|
T Consensus 400 ~L~~n~l~~~~p~~l~~l---------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNC---------SELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp ECCSSEEEEECCGGGGGC---------TTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred ECCCCccccccCHHHhcC---------CCCCEEECcCCccc--CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 999999874332221110 00111111110000 001112233468999999999988 788888889999
Q ss_pred cEEECCCCccc-ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136 383 TKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (542)
Q Consensus 383 ~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 461 (542)
++|++++|.++ .+|.++..+++|++|++++|.+++..+..++.+++|++|++++|++....+..+..+++|+.|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 99999999988 47888999999999999999999877778899999999999999998766677899999999999999
Q ss_pred cCCCCCCC----------------------------------------------------------------------CC
Q 009136 462 IASLPENP----------------------------------------------------------------------PF 471 (542)
Q Consensus 462 ~~~~~~~~----------------------------------------------------------------------~~ 471 (542)
.+.+..|. .+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 77643332 34
Q ss_pred CCCchhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCCccc-ccCccccCCCCCCEEECCCCcCC-cCCCCCCC
Q 009136 472 SSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELVS 541 (542)
Q Consensus 472 ~~~~~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~-~lp~~~~~ 541 (542)
..+++|+.|++ .+.+. .+|..++++++|+.|++++|.++ .+|+.+..+++|+.|++++|+++ .+|+.+..
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 45677888888 66665 78999999999999999999998 67999999999999999999999 67776654
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-47 Score=398.59 Aligned_cols=473 Identities=20% Similarity=0.256 Sum_probs=378.4
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (542)
..+++++.+++++|..+.. ++++|++++|.++.+ |.+|.++++|++|++++|.+..+ |.+|.+
T Consensus 15 ~~~~c~~~~l~~iP~~l~~---------------~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPN---------------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79 (606)
T ss_dssp TEEECTTSCCSSCCTTSCT---------------TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEECCCCCcccCcCCCCC---------------cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC
Confidence 5688999999999987743 589999999999877 56889999999999999988876 668899
Q ss_pred CCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCC-cccccCCCccEEE
Q 009136 90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD 166 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~ 166 (542)
+++|++|++++|.++.+ |..+..+++|++|++++|.+..+ +..+.++++|++|++++|.+..++ ..+..+++|++|+
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred ccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence 99999999999988855 66788999999999999998876 467888999999999999888653 3344589999999
Q ss_pred ccCCcccccchhhhhccccCc--EEEcCCcccCccccccCCCC-------------------------------------
Q 009136 167 VEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLS------------------------------------- 207 (542)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~------------------------------------- 207 (542)
+++|.+..+.+..++.+++|+ ++++++|.+..++.......
T Consensus 160 L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred cccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccc
Confidence 999999888888888888888 88888888866543222222
Q ss_pred ---------------cccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchh
Q 009136 208 ---------------RLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271 (542)
Q Consensus 208 ---------------~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 271 (542)
+++.+++.+|.+..++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|.+...+..
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh
Confidence 56777777777776644 47788888888888888888888888888888888888888866443
Q ss_pred h--hcccccEEEccCCCCCC-CCh-hhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhh
Q 009136 272 A--CQLRLSVLDLSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347 (542)
Q Consensus 272 ~--~~~~L~~l~l~~~~l~~-l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (542)
. ....|+.+++++|.+.. ++. .+..+++|+.|++++|.+.......
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------------ 369 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN------------------------------ 369 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST------------------------------
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc------------------------------
Confidence 2 23448888888887763 444 3778888888888888876543100
Q ss_pred hhhhhhcccccccEEEecCCCCCCC-CccccccCCccEEECCCCcccccC--hhcccCccCcEEEccCCcCCCCChhhhh
Q 009136 348 LITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILT 424 (542)
Q Consensus 348 ~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 424 (542)
......+++++++++++.+..+ +..+..+++|++|++++|.++... ..+..+++|++|++++|.+++.++..+.
T Consensus 370 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 370 ---LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ---TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred ---hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 0112235789999999988754 556777899999999999887643 3478899999999999999988888889
Q ss_pred CCCCCcEEEccCCCCccc---CCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccc-cCchhhhcCCCC
Q 009136 425 SLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLR-EAPTDILRLQQL 499 (542)
Q Consensus 425 ~l~~L~~L~L~~n~i~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~-~~~~~l~~~~~L 499 (542)
.+++|++|++++|++.+. ....+..+++|++|++++|.++...+..|..+++|++|++ .+.+. ..|..+.++++|
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 999999999999998762 2255788999999999999999888888999999999999 66665 446778899999
Q ss_pred CEEeCCCCccccc-CccccCCCCCCEEECCCCcCC
Q 009136 500 RILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 500 ~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~ 533 (542)
.|++++|+++.+ |+.+..+++|+.|++++|+++
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 999999999877 556889999999999999876
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-46 Score=393.75 Aligned_cols=503 Identities=24% Similarity=0.304 Sum_probs=242.1
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (542)
+.+|+++++++++|.++. +++++|++++|.+..++ .+|.++++|++|++++|.+..+ |.++.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 71 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71 (680)
T ss_dssp SEEECCSSCCSSCCSCSC---------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH
T ss_pred CeeECCCCCccccccccC---------------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc
Confidence 345666666666665442 23555555555555443 2355555555555555555543 334555
Q ss_pred CCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccC-CcccccCCCccEEE
Q 009136 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD 166 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~ 166 (542)
+++|++|++++|.++.+|. .|..+++|++|++++|++..++ ..+.++++|++|++++|.+... +..+..+++|++|+
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 5555555555555554443 3455555555555555554443 3344555555555555554432 22344455555555
Q ss_pred ccCCcccccchhhhh--ccccCcEEEcCCcccCccc--------------------------------------------
Q 009136 167 VEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-------------------------------------------- 200 (542)
Q Consensus 167 l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~-------------------------------------------- 200 (542)
+++|.++.+....+. .+++|++|++++|.++.++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 555555444433332 2244555555554443322
Q ss_pred --------cccCCCCc--ccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCc--
Q 009136 201 --------ETIGSLSR--LIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLK-- 266 (542)
Q Consensus 201 --------~~~~~~~~--L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~-- 266 (542)
.++..++. |+.|++++|.+..+ +..+..+++|+.+++++|.+..+ +..+..+++|++|+++++...
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence 22222222 44444444444432 23344444444444444444422 233444444444444443211
Q ss_pred ----ccc-----hhhhcccccEEEccCCCCCCCCh-hhcCcCCCcEEEcCCCccc--cccccccCCCcHHHHHHHhhcCC
Q 009136 267 ----EYC-----VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLR--TLRSSLVNGPTPALLKYLRSRLP 334 (542)
Q Consensus 267 ----~~~-----~~~~~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 334 (542)
.++ .......|+.+++++|.+.+++. .+..+++|+++++++|.+. .++...+..... ..+.
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~-------~~L~ 384 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-------SPLH 384 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT-------SCCC
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc-------CcCc
Confidence 011 00111235555555555555432 2455555555555555421 111111100000 0000
Q ss_pred CCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCC-ccccccCCccEEECCCCcccccC-hhcccCccCcEEEcc
Q 009136 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIP-SEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILS 411 (542)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~ 411 (542)
....... .............+++++++++++.+. .++ ..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 385 ~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 385 ILNLTKN--KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp EEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred eEECCCC--CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 0000000 000000011122345555555555554 233 34444555666666665555433 245556666666666
Q ss_pred CCcCCC--CChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCC--------CCCCCCchhHHHH
Q 009136 412 RNKIKD--WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN--------PPFSSLPHLQELY 481 (542)
Q Consensus 412 ~~~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L~ 481 (542)
+|.++. ..+..+..+++|++|++++|+++.++...|.++++|++|++++|.++.+.. ..+.++++|+.|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 665542 233445666666666666666666666666666666666666666654321 1255666666666
Q ss_pred H-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCCcCCCC
Q 009136 482 L-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538 (542)
Q Consensus 482 l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~lp~~ 538 (542)
+ .+.+..+|.. +..+++|+.|++++|+++.+|.. |..+++|+.|++++|+++.+|+.
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 6 5566666653 56667777777777776666443 56667777777777777666653
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.6e-46 Score=391.01 Aligned_cols=478 Identities=26% Similarity=0.296 Sum_probs=308.2
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchH-h
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-A 86 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~-~ 86 (542)
++++.|+++++.++.+|...+.. +++|++|++++|.+..+ |.++.++++|++|++++|.+..+|. +
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTR------------YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGG------------GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhC------------CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh
Confidence 45677777777777777665554 44455555555555433 3445555555555555555555443 3
Q ss_pred hhCCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCCcc---cccCC-
Q 009136 87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPED---LADCS- 160 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~---~~~~~- 160 (542)
|..+++|++|++++|.++.++ ..+.++++|++|++++|.+... +..+.++++|++|++++|.+..++.. ...++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 555555555555555555443 3355555555555555554432 23344455555555554444332211 11123
Q ss_pred --------------------------------------------------CccEEEccCCcccccchhhhhcccc--CcE
Q 009136 161 --------------------------------------------------KMSKLDVEGNKLTVLSNNLIASWTM--LTE 188 (542)
Q Consensus 161 --------------------------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~--L~~ 188 (542)
+|+.|++++|.+....+..+..++. |++
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 3344444444444444444444443 777
Q ss_pred EEcCCcccCccc-cccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc------ccch----hccCCCCcc
Q 009136 189 LIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS------ALPA----ELGKLSKLG 256 (542)
Q Consensus 189 L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~------~~~~----~~~~~~~L~ 256 (542)
|++++|.+..++ ..+..+++|+.|++++|.+..+ +..+..+++|+.++++++... .+|. .+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 777777776553 5577777888888887776643 345555666666666554322 1221 344455555
Q ss_pred EEEcCCCcCcccchhhhc--ccccEEE----------------------------ccCCCCCCC-ChhhcCcCCCcEEEc
Q 009136 257 TLDLHSNQLKEYCVEACQ--LRLSVLD----------------------------LSNNSLSGL-PPEIGKMTTLRKLLL 305 (542)
Q Consensus 257 ~L~l~~~~i~~~~~~~~~--~~L~~l~----------------------------l~~~~l~~l-~~~l~~~~~L~~L~l 305 (542)
+|++++|.+...+...+. .+|+.++ +++|.++++ +..+..+++|+.|++
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 555555555443332211 2244444 444444443 233445555555555
Q ss_pred CCCcccc-ccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC-CccccccCCcc
Q 009136 306 TGNPLRT-LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEIT 383 (542)
Q Consensus 306 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~ 383 (542)
++|.+.. ++. ......+++++++++++.+..+ +..+..+++|+
T Consensus 413 ~~N~l~~~~~~-----------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 413 GLNEIGQELTG-----------------------------------QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp CSSCCEEECCS-----------------------------------GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred CCCcCccccCc-----------------------------------ccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 5554432 111 1122346789999999998754 44566789999
Q ss_pred EEECCCCccc---ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCC--------ccCCCCC
Q 009136 384 KLDLSRNSIQ---ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD--------GFKDIPM 452 (542)
Q Consensus 384 ~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~--------~~~~~~~ 452 (542)
+|++.+|.+. .+|..+..+++|++|++++|.+++++...|.++++|++|++++|++..+... .|.++++
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence 9999999875 4677899999999999999999999999999999999999999999876332 3788999
Q ss_pred CceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc-cc-CCCCCCEEECC
Q 009136 453 LQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FK-NLTSLTELDLS 528 (542)
Q Consensus 453 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~-l~-~~~~L~~L~l~ 528 (542)
|++|++++|+++.+.+..|.++++|+.|++ .+.+..+|.. +..+++|+.|++++|+++.++.. +. .+++|+.|+++
T Consensus 538 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred CCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence 999999999999887778999999999999 8888888876 57899999999999999988544 66 78999999999
Q ss_pred CCcCC
Q 009136 529 DNNIS 533 (542)
Q Consensus 529 ~~~l~ 533 (542)
+|++.
T Consensus 618 ~N~~~ 622 (680)
T 1ziw_A 618 FNPFD 622 (680)
T ss_dssp TCCCC
T ss_pred CCCcc
Confidence 99976
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=380.96 Aligned_cols=473 Identities=22% Similarity=0.283 Sum_probs=379.1
Q ss_pred hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-Hhhh
Q 009136 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (542)
Q Consensus 11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~~~ 88 (542)
-..+++++.+++++|..+. +++++|++++|.+..++ .+|..+++|++|++++|.+..++ .+|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence 3568999999999998663 46999999999999775 57999999999999999999874 5799
Q ss_pred CCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc--CCcccccCCCccE
Q 009136 89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK 164 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~ 164 (542)
++++|++|++++|.++.++ ..|..+++|++|++++|++..++. .++++++|++|++++|.+.. +|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999998765 679999999999999999998775 68899999999999999885 6888999999999
Q ss_pred EEccCCcccccchhhhhccccC----cEEEcCCcccCccccccCCCCcccEEEccCCCCc--cCCCCC------------
Q 009136 165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSI------------ 226 (542)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~------------ 226 (542)
|++++|.+..+....++.+.+| .++++++|.+..++.......+|+.+++.+|... .++..+
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999998888888888888 8999999999876644334447999998887322 111111
Q ss_pred ------------------cCCC--CCcEEEcCCC-cCc-ccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccC
Q 009136 227 ------------------SGCC--SLAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284 (542)
Q Consensus 227 ------------------~~~~--~L~~l~l~~~-~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~ 284 (542)
..++ .++.+++.++ .+. ..+..+..+++|+++++++|.+..++.......++.+++++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 313 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEES
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeecc
Confidence 1111 1233444443 222 34566777888888888888888776665555788888888
Q ss_pred CCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEe
Q 009136 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364 (542)
Q Consensus 285 ~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 364 (542)
|.+..+|. ..+++|+.+++++|.+...... ...++++++++
T Consensus 314 n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-------------------------------------~~~~~L~~L~l 354 (570)
T 2z63_A 314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDL 354 (570)
T ss_dssp CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-------------------------------------CBCTTCCEEEC
T ss_pred CcccccCc--ccccccCEEeCcCCcccccccc-------------------------------------ccCCCCCEEeC
Confidence 88887766 4678888888888865332110 12357888888
Q ss_pred cCCCCCCC---CccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCCh-hhhhCCCCCcEEEccCCCCc
Q 009136 365 EGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLR 440 (542)
Q Consensus 365 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~i~ 440 (542)
+++.+... +..+..+++|++|++++|.+..++..+..+++|++|++++|.+++... ..+..+++|++|++++|.+.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 88887755 466777889999999999988887778889999999999998887654 56788999999999999988
Q ss_pred ccCCCccCCCCCCceEecCCCcCC-CCCCCCCCCCchhHHHHH-hhccccC-chhhhcCCCCCEEeCCCCcccccC-ccc
Q 009136 441 QVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGF 516 (542)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~l~-~~l 516 (542)
......+.++++|++|++++|.+. ...+..+..+++|++|++ .+.+..+ |..+..+++|++|++++|.++.++ ..|
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 877777888999999999999886 345678888999999999 6677765 778889999999999999999884 568
Q ss_pred cCCCCCCEEECCCCcCCc-CCC
Q 009136 517 KNLTSLTELDLSDNNISA-LPP 537 (542)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~-lp~ 537 (542)
..+++|+.|++++|+++. .|.
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred hcccCCcEEEecCCcccCCCcc
Confidence 999999999999999884 443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.5e-46 Score=385.93 Aligned_cols=450 Identities=21% Similarity=0.243 Sum_probs=381.2
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcc-hHh
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA 86 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~~ 86 (542)
+++++|+++++.+++++...+.. +++|++|++++|.+..+ |.+|.++++|++|++++|.+..+ |.+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 56899999999999998876665 78899999999999977 56899999999999999999987 778
Q ss_pred hhCCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCC--cCCccccCCCCCCeEEccCCccccCC-cccccCCCc
Q 009136 87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L 162 (542)
|.++++|++|++++|.++.++ ..++++++|++|++++|.+. .+|..+.++++|++|++++|.+..++ ..+..+.+|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 999999999999999998776 67999999999999999988 47888999999999999999988654 335555444
Q ss_pred ----cEEEccCCcccccchhhhhccccCcEEEcCCcccC-----------------------------------------
Q 009136 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN----------------------------------------- 197 (542)
Q Consensus 163 ----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------------------------- 197 (542)
.++++++|.+..+....+... +|++|++++|.+.
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 478898888888877766655 7888888777542
Q ss_pred -----------------c-cccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEE
Q 009136 198 -----------------G-MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 259 (542)
Q Consensus 198 -----------------~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~ 259 (542)
. +|. +..+++|+.+++.++.+..++ .+..+++|+.+++++|.+..+|. + .+++|++|+
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~ 334 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLT 334 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEE
T ss_pred hhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccccc-C-CCCccceee
Confidence 0 112 556788999999999998887 88899999999999999998884 5 999999999
Q ss_pred cCCCcCcccchhhhcccccEEEccCCCCCCC---ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCC
Q 009136 260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336 (542)
Q Consensus 260 l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (542)
+++|............+|+.+++++|.++.+ +..+..+++|+.|++++|.+..++...
T Consensus 335 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------- 395 (606)
T 3vq2_A 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF------------------- 395 (606)
T ss_dssp EESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC-------------------
T ss_pred ccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc-------------------
Confidence 9999544333333445699999999998875 778899999999999999887654111
Q ss_pred CccccccchhhhhhhhhcccccccEEEecCCCCCCCCc--cccccCCccEEECCCCcccc-cChhcccCccCcEEEccCC
Q 009136 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRN 413 (542)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~ 413 (542)
...+++++++++++.+...+. .+..+++|++|++++|.++. .|..+..+++|++|++++|
T Consensus 396 -----------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 396 -----------------MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp -----------------TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred -----------------cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 123578999999999886654 67778999999999999887 5667899999999999999
Q ss_pred cCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch
Q 009136 414 KIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT 491 (542)
Q Consensus 414 ~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~ 491 (542)
.+++ ..+..+..+++|++|++++|+++++.+..+.++++|++|++++|+++...+..+..+++|+.|++ .+.+..+|.
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence 9987 45666899999999999999999988888999999999999999999988889999999999999 888899999
Q ss_pred hhhcCC-CCCEEeCCCCcccc
Q 009136 492 DILRLQ-QLRILDLSQNSLQS 511 (542)
Q Consensus 492 ~l~~~~-~L~~L~l~~~~l~~ 511 (542)
.+..++ +|+.|++++|++..
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCC
T ss_pred hHhhhcccCcEEEccCCCccc
Confidence 999887 59999999998763
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.9e-45 Score=379.19 Aligned_cols=480 Identities=21% Similarity=0.235 Sum_probs=333.9
Q ss_pred CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCC
Q 009136 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 123 (542)
.-+.++.++..+..+|..+.. ++++|++++|.++.+ +.+|.++++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 13 ~~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 13 VNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 456899999999999988764 899999999999988 56899999999999999999865 77899999999999999
Q ss_pred CcCCcC-CccccCCCCCCeEEccCCccccC-CcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc-c
Q 009136 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P 200 (542)
Q Consensus 124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~ 200 (542)
|++..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.++.+ +
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 999865 67899999999999999999987 56689999999999999999987655577799999999999999876 4
Q ss_pred cccCCCCccc--EEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc--------------------------cc-chhccC
Q 009136 201 ETIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--------------------------AL-PAELGK 251 (542)
Q Consensus 201 ~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------------------------~~-~~~~~~ 251 (542)
..+..+++|+ .+++++|.+..++.......+|+.++++++... .+ +..+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 6688889998 899999999876554445566777777665310 00 011111
Q ss_pred C--CCccEEEcCCCcCcccchhhhc--ccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHH
Q 009136 252 L--SKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (542)
Q Consensus 252 ~--~~L~~L~l~~~~i~~~~~~~~~--~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 327 (542)
+ .+++.+++++|.++.++...+. ..|+.+++++|.++.+|..+..+++|++|++++|.+..+....+....
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~----- 325 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP----- 325 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-----
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-----
Confidence 1 1566777777766665554322 347777777777777776677777777777777766554322211100
Q ss_pred HHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC---CccccccCCccEEECCCCccccc-ChhcccCc
Q 009136 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCA 403 (542)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~ 403 (542)
.+........... ...........+++++++++++.+... +..+..+++|++|++++|.+..+ |..+..++
T Consensus 326 ----~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 326 ----SLTHLSIKGNTKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp ----TCSEEECCSCSSC-CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred ----cCCEEECCCCCcc-cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 0000000000000 000000112235667777777776644 44556667777777777776654 44566777
Q ss_pred cCcEEEccCCcCCCCCh-hhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCC---CCCCCCCCchhHH
Q 009136 404 SLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQE 479 (542)
Q Consensus 404 ~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~ 479 (542)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.......+..+++|++|++++|.+... .+..+..+++|++
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 77777777777765433 3366777777777777777766666677777777777777766541 2244666777777
Q ss_pred HHH-hhccccC-chhhhcCCCCCEEeCCCCccccc-CccccCCCCCCEEECCCCcCCcCCCC
Q 009136 480 LYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPE 538 (542)
Q Consensus 480 L~l-~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~lp~~ 538 (542)
|++ .+.+..+ |..+..+++|++|++++|+++.. |+.+.++++| .|++++|+++.+|+.
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 777 5555544 45667777777777777777654 5667777777 777777777776654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-43 Score=378.58 Aligned_cols=469 Identities=23% Similarity=0.267 Sum_probs=374.4
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCC-Ccc-hHhhh
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKL-SEL-PAAIG 88 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~-~~l-~~~~~ 88 (542)
+..|+++++++.+|. + .+++++|++++|.+..+ +.+|.++++|++|++++|.. ..+ |.+|.
T Consensus 7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence 468999999999998 4 45799999999999866 57899999999999999954 456 67899
Q ss_pred CCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCc-CCcc--ccCCCCCCeEEccCCccccCC--cccccCCCc
Q 009136 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM 162 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L 162 (542)
++++|++|++++|.+..+ |..|..+++|++|++++|.+.. ++.. +.++++|++|++++|.+..++ ..++.+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 999999999999999865 7889999999999999999885 4443 889999999999999998653 468999999
Q ss_pred cEEEccCCcccccchhhhhcc--ccCcEEEcCCcccCc-cccccCCCCc------ccEEEccCCCCcc-CCCC-------
Q 009136 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS------- 225 (542)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~~~~~~~------L~~L~l~~~~~~~-~~~~------- 225 (542)
++|++++|.+..+....+..+ ++|+.|++++|.+.. .+..+..+++ |+.|++++|.+.. .+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 999999999988777777777 889999999998854 4444444443 8999999886541 1111
Q ss_pred -----------------------------CcC--CCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhh
Q 009136 226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC 273 (542)
Q Consensus 226 -----------------------------~~~--~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 273 (542)
+.. .++++.|++++|.+..+ +..+..+++|+.|++++|.++......+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 111 36899999999988855 5668889999999999999887755433
Q ss_pred --cccccEEEccCCCCCCC-ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhh
Q 009136 274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (542)
Q Consensus 274 --~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (542)
..+|+.|++++|.+..+ +..+..+++|+.|++++|.+..++...+..
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------ 360 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------------------------------ 360 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS------------------------------
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC------------------------------
Confidence 24599999999998886 556888999999999999887665443322
Q ss_pred hhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChh-hhhCCCCC
Q 009136 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSL 429 (542)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L 429 (542)
.++++.+++++|.+..++. +++|++|++++|.++.+|.. ..+++.|++++|.+++++.. .+.++++|
T Consensus 361 -----l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 361 -----LEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp -----CCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred -----CCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 3578899999998887654 77899999999998888753 56788999999999886543 35688999
Q ss_pred cEEEccCCCCcccCCC-ccCCCCCCceEecCCCcCCC-----CCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCE
Q 009136 430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASL-----PENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRI 501 (542)
Q Consensus 430 ~~L~L~~n~i~~~~~~-~~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~ 501 (542)
++|++++|++..+... .+..+++|+.|++++|.+.. ..+..|.++++|+.|++ .+.+..++.. +..+++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 9999999998865433 45668899999999998863 33456788899999999 7777776655 678999999
Q ss_pred EeCCCCcccccCccccCCCCCCEEECCCCcCCcCCCCC
Q 009136 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539 (542)
Q Consensus 502 L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~~~ 539 (542)
|++++|+++.+|...-. ++|+.|++++|+++.+++..
T Consensus 509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC
T ss_pred eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH
Confidence 99999999988654322 88999999999998776654
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-43 Score=362.86 Aligned_cols=464 Identities=20% Similarity=0.243 Sum_probs=333.9
Q ss_pred hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcch-Hhhh
Q 009136 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (542)
Q Consensus 11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~-~~~~ 88 (542)
....|+++++++++|..++ ++|++|++++|.+..+ |.+|..+++|++|++++|.+..++ .+|.
T Consensus 7 ~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 71 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 71 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT
T ss_pred CceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc
Confidence 3457888899999998764 4699999999998866 467899999999999999998775 5788
Q ss_pred CCCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCc--CCccccCCCCCCeEEccCCc-cccCC-cccccCCCcc
Q 009136 89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSKMS 163 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~l~-~~~~~~~~L~ 163 (542)
.+++|++|++++|.++.++.. ++.+++|++|++++|.+.. .+..+.++++|++|++++|. +..++ ..+..+++|+
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 999999999999998877655 8889999999999998884 45678889999999999987 56665 4688889999
Q ss_pred EEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc-CCCCcccEEEccCCCCccCC----CCCcCCCCCcEEEcC
Q 009136 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMG 238 (542)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~l~l~ 238 (542)
+|++++|.+....+..+..+++|++|+++++....++..+ ..+++|+.|++++|.+...+ .....+++|+.++++
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred eeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 9999999988877777888899999999998887776543 45788999999998887642 223457788888888
Q ss_pred CCcCc-----ccchhccCCCCccEEEcCCCcCcccchh--------hhcccccEEEccCCCCCCC------ChhhcCcCC
Q 009136 239 NNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE--------ACQLRLSVLDLSNNSLSGL------PPEIGKMTT 299 (542)
Q Consensus 239 ~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~~~~~--------~~~~~L~~l~l~~~~l~~l------~~~l~~~~~ 299 (542)
++.+. .++..+..+++|+.+++++|.+...... .....++.+++.++.+... +.......+
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 88766 2334456677888888887766543211 1122366666666544331 222233456
Q ss_pred CcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC-C---cc
Q 009136 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-P---SE 375 (542)
Q Consensus 300 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~---~~ 375 (542)
++.+++++|.+..++...+ ...+++++++++++.+... + ..
T Consensus 312 L~~L~l~~n~l~~ip~~~~-----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 312 VKRITVENSKVFLVPCSFS-----------------------------------QHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCEEEEESSCCCCCCHHHH-----------------------------------HHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred ceEEEeccCccccCCHHHH-----------------------------------hcCccccEEEccCCccccccccchhh
Confidence 6666666666544332111 1124566666766666532 1 22
Q ss_pred ccccCCccEEECCCCcccccCh---hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCC
Q 009136 376 IWEAGEITKLDLSRNSIQELPP---ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452 (542)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~---~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~ 452 (542)
+..+++|++|++++|.++.++. .+..+++|++|++++|+++.++.. +..+++|++|++++|++..++... .++
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~~~ 432 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---PQT 432 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---CTT
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---cCC
Confidence 4456777777777777766542 366777777777777777765543 466677777777777776655432 257
Q ss_pred CceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccC-ccccCCCCCCEEECCCC
Q 009136 453 LQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDN 530 (542)
Q Consensus 453 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~ 530 (542)
|++|++++|+++.. ...+++|++|++ .+.+..+|. ...+++|+.|++++|+++.++ ..+..+++|+.|++++|
T Consensus 433 L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 433 LEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ceEEECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 77777777777653 246777777777 666667776 456899999999999999874 55899999999999999
Q ss_pred cCC
Q 009136 531 NIS 533 (542)
Q Consensus 531 ~l~ 533 (542)
+++
T Consensus 508 ~~~ 510 (549)
T 2z81_A 508 PWD 510 (549)
T ss_dssp CBC
T ss_pred Ccc
Confidence 875
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=359.31 Aligned_cols=454 Identities=21% Similarity=0.239 Sum_probs=373.9
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-Hh
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA 86 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~ 86 (542)
.+++.|+++++++++++...+.. +++|++|++++|.+..++ .+|.++++|++|++++|.++.++ .+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 35889999999999988766665 788999999999999775 67999999999999999999875 58
Q ss_pred hhCCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCc--CCccccCCCCCCeEEccCCccccCC-cccccCCCc
Q 009136 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L 162 (542)
|..+++|++|++++|.++.++. .++.+++|++|++++|.+.. +|..+.++++|++|++++|.+..++ ..+..+++|
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999999999998865 58999999999999999985 6889999999999999999998664 457777777
Q ss_pred ----cEEEccCCcccccchhhhhccccCcEEEcCCcccC--ccccccCCCC-----------------------------
Q 009136 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLS----------------------------- 207 (542)
Q Consensus 163 ----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~----------------------------- 207 (542)
+.+++++|.+..+.+..+... +|+++++++|... .++..+..++
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 899999999998888777765 7999998887432 1121122222
Q ss_pred ---cccEEEccCC-CCc-cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEc
Q 009136 208 ---RLIRLDLHQN-RIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (542)
Q Consensus 208 ---~L~~L~l~~~-~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l 282 (542)
.++.+++.++ .+. ..+..+..+++|+.+++++|.+..+|..+..+ +|++|++++|.+..++.. ....|+.+++
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~-~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL-KLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC-BCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc-cccccCEEeC
Confidence 2344444444 222 45677888999999999999999999888888 999999999999877663 4456999999
Q ss_pred cCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEE
Q 009136 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (542)
Q Consensus 283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (542)
++|.+...... ..+++|+.|++++|.+....... ......++++++
T Consensus 333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~---------------------------------~~~~~~~~L~~L 378 (570)
T 2z63_A 333 TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCS---------------------------------QSDFGTTSLKYL 378 (570)
T ss_dssp ESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEE---------------------------------HHHHTCSCCCEE
T ss_pred cCCcccccccc-ccCCCCCEEeCcCCccCcccccc---------------------------------ccccccCccCEE
Confidence 99987764443 77899999999999876442100 011124678999
Q ss_pred EecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (542)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~ 440 (542)
+++++.+..++..+..+++|++|++++|.+...+. .+..+++|++|++++|.+++..+..+.++++|++|++++|++.
T Consensus 379 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence 99999998888778889999999999999887643 6789999999999999999988888999999999999999987
Q ss_pred c-cCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch-hhhcCCCCCEEeCCCCcccc
Q 009136 441 Q-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQS 511 (542)
Q Consensus 441 ~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~ 511 (542)
+ ..+..+..+++|++|++++|+++...+..+..+++|+.|++ .+.+..++. .+..+++|+.|++++|++..
T Consensus 459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 3 33456899999999999999999988889999999999999 777777764 47899999999999998873
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=373.83 Aligned_cols=467 Identities=25% Similarity=0.282 Sum_probs=381.5
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCc-ccch-hHhhcCCCCCcEEEcCCCCCCcc-hH
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSEL-PA 85 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~ 85 (542)
++++.||++++.|+.++...+.. +++|++|++++|. +..+ |.+|.++++|++|++++|.+..+ |.
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~------------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPF------------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSS------------CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCcCEEECCCCcCCccChhHCcc------------cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 57899999999999886655554 7889999999994 4466 67899999999999999999977 77
Q ss_pred hhhCCCCCcEEecCCCcccc-CCcc--ccccCCccEEEcCCCcCCcCC--ccccCCCCCCeEEccCCccccC-CcccccC
Q 009136 86 AIGELHMLKSLDVSFNSIMK-IPDE--IGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSL-PEDLADC 159 (542)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~ 159 (542)
+|.++++|++|++++|.++. ++.. +.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 99999999999999999885 4544 899999999999999998653 5689999999999999998754 4456655
Q ss_pred --CCccEEEccCCcccccchhhhhcccc------CcEEEcCCcccCc-cccc----------------------------
Q 009136 160 --SKMSKLDVEGNKLTVLSNNLIASWTM------LTELIASKNLLNG-MPET---------------------------- 202 (542)
Q Consensus 160 --~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~-~~~~---------------------------- 202 (542)
++|+.|++++|.+.......+..+.+ |++|++++|.+.. .+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 88999999998887655444444443 8899998886531 1111
Q ss_pred --------cCC--CCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccch
Q 009136 203 --------IGS--LSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCV 270 (542)
Q Consensus 203 --------~~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~ 270 (542)
+.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++....
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 111 26799999999998855 56789999999999999999966 5678999999999999999987644
Q ss_pred hhh--cccccEEEccCCCCCCCCh-hhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhh
Q 009136 271 EAC--QLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347 (542)
Q Consensus 271 ~~~--~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (542)
..+ ...|+.+++++|.+..++. .+..+++|+.|++++|.+..++.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------------------------------- 379 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------------------------------- 379 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--------------------------------
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--------------------------------
Confidence 332 2459999999999998765 47889999999999998865431
Q ss_pred hhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChh-hhh
Q 009136 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA-ILT 424 (542)
Q Consensus 348 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~-~l~ 424 (542)
.++++.+.++++.+..+|.. ..+++.|++++|.++.++. .+..+++|++|++++|.+++.+.. .+.
T Consensus 380 --------~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 380 --------IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp --------CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred --------CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 35688999999999988754 4689999999999988765 356899999999999999876443 456
Q ss_pred CCCCCcEEEccCCCCccc-----CCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCC
Q 009136 425 SLSSLSCLKLDNNPLRQV-----PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQ 498 (542)
Q Consensus 425 ~l~~L~~L~L~~n~i~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~ 498 (542)
.+++|+.|++++|.+... ....|.++++|+.|++++|.++.+.+..|..+++|++|++ .+.+..++..... ++
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~ 527 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-AN 527 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SC
T ss_pred cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-cc
Confidence 689999999999998743 3345788999999999999999999999999999999999 8888888766544 89
Q ss_pred CCEEeCCCCcccccCccccCCCCCCEEECCCCcCC
Q 009136 499 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 499 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~ 533 (542)
|+.|++++|+++.++.. .+++|+.|++++|++.
T Consensus 528 L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred ccEEECCCCcCCCCChh--HhCCcCEEEecCCCcc
Confidence 99999999999977332 2458999999999864
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=353.64 Aligned_cols=445 Identities=20% Similarity=0.248 Sum_probs=318.8
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (542)
+.+|+++++++++|..++ ++|++|++++|.+..++ .+|..+++|++|++++|.++.+ |.+|..
T Consensus 3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence 578899999988887663 46899999998888665 6788888899999988888876 668888
Q ss_pred CCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCc--CCccccCCCCCCeEEccCCccccCCcccccCCCc--cEE
Q 009136 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L 165 (542)
+++|++|++++|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.. ..+..+++| ++|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence 88888888888888877766 78888888888888775 45677777777777777777664 245555555 666
Q ss_pred EccCCcc--cccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCcc-C-CCCCcCCCCCcEEEcCCCc
Q 009136 166 DVEGNKL--TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNNA 241 (542)
Q Consensus 166 ~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~l~l~~~~ 241 (542)
++++|.+ ....+..+..+.. ....+++.+|.+.. + ...+..+++|+.+++++|.
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNT----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCE----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred Eeeccccccccccccccccccc----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 6666665 3322222222221 12223344443331 1 1234455556666655554
Q ss_pred -------CcccchhccCCCCccEEEcCCCcCcccch-----hhhcccccEEEccCCCCC-CCChhh-----cCcCCCcEE
Q 009136 242 -------LSALPAELGKLSKLGTLDLHSNQLKEYCV-----EACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKL 303 (542)
Q Consensus 242 -------~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-----~~~~~~L~~l~l~~~~l~-~l~~~l-----~~~~~L~~L 303 (542)
+......+..+++|+.|+++++.+..... .....+++.+++++|.+. .+|..+ ..+++|+.+
T Consensus 202 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp STTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred cccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 22222346666777777777665553211 112235777777777776 466666 778888888
Q ss_pred EcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCcc
Q 009136 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (542)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~ 383 (542)
+++++.+ .++... ... .....+++.++++++.+...+. ...+++|+
T Consensus 282 ~l~~n~~-~~p~~~--------~~~------------------------~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~ 327 (520)
T 2z7x_B 282 QVVSDVF-GFPQSY--------IYE------------------------IFSNMNIKNFTVSGTRMVHMLC-PSKISPFL 327 (520)
T ss_dssp EEEECCC-CSCTHH--------HHH------------------------HHHTCCCSEEEEESSCCCCCCC-CSSCCCCC
T ss_pred cccccce-ecchhh--------hhc------------------------ccccCceeEEEcCCCccccccc-hhhCCccc
Confidence 8887765 322100 000 0011357888888888766542 24678999
Q ss_pred EEECCCCcccc-cChhcccCccCcEEEccCCcCCCCCh--hhhhCCCCCcEEEccCCCCcc-cCCCccCCCCCCceEecC
Q 009136 384 KLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLS 459 (542)
Q Consensus 384 ~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~l~ 459 (542)
+|++++|.++. +|..+..+++|++|++++|.+++++. ..+..+++|++|++++|++.. ++...+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 99999999887 67788899999999999999987543 568899999999999999987 776678888999999999
Q ss_pred CCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCC
Q 009136 460 YNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 460 ~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~ 533 (542)
+|.++...+..+. ++|+.|++ .+.+..+|..+..+++|++|++++|+++.+|.. +..+++|+.|++++|+++
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 9988765544443 68999999 788889999988999999999999999999876 899999999999999986
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-41 Score=348.68 Aligned_cols=456 Identities=19% Similarity=0.231 Sum_probs=372.1
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccCC-ccccccCCccEEEc
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC 121 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l 121 (542)
|+.....+.+++.++.+|..+. ++|++|++++|.++.+ +.++..+++|++|++++|.++.++ ..|..+++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4555567888999999998664 7999999999999977 568999999999999999999764 67999999999999
Q ss_pred CCCcCCcCCcc-ccCCCCCCeEEccCCcccc--CCcccccCCCccEEEccCCc-ccccchhhhhccccCcEEEcCCcccC
Q 009136 122 SSNQLKELPSS-LGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLN 197 (542)
Q Consensus 122 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (542)
++|++..++.. +.++++|++|++++|.+.. .+..+..+++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999987754 8999999999999999984 45679999999999999998 67777777999999999999999997
Q ss_pred c-cccccCCCCcccEEEccCCCCccCCCCC-cCCCCCcEEEcCCCcCcccc----hhccCCCCccEEEcCCCcCcccchh
Q 009136 198 G-MPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP----AELGKLSKLGTLDLHSNQLKEYCVE 271 (542)
Q Consensus 198 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~~~~~ 271 (542)
. .|..+..+++|+.|++.++.+..++..+ ..+++|+.+++++|.+..++ .....+++|+.|+++++.++.....
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 6 6788999999999999999887665543 56899999999999988652 2234578999999999987753322
Q ss_pred h------hcccccEEEccCCCCCCCC-------hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCc
Q 009136 272 A------CQLRLSVLDLSNNSLSGLP-------PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338 (542)
Q Consensus 272 ~------~~~~L~~l~l~~~~l~~l~-------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (542)
. ....++.+++++|.+.++. ..+..+.+++.+.+.++.+...... ..
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~---~~----------------- 301 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF---YD----------------- 301 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS---CC-----------------
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhc---cc-----------------
Confidence 2 1234899999998766542 2246678889999888765432100 00
Q ss_pred cccccchhhhhhhhhcccccccEEEecCCCCCCCCcccc-ccCCccEEECCCCcccc-cC---hhcccCccCcEEEccCC
Q 009136 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-LP---PELSSCASLQTLILSRN 413 (542)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-l~---~~~~~~~~L~~L~l~~~ 413 (542)
..........+++++++++.+..+|..+. .+++|++|++++|.+++ +| .++..+++|++|++++|
T Consensus 302 ----------l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 302 ----------LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp ----------CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred ----------chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 00111234578999999999999998875 68999999999999876 33 23678999999999999
Q ss_pred cCCCCCh--hhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCc
Q 009136 414 KIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP 490 (542)
Q Consensus 414 ~l~~~~~--~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~ 490 (542)
.+++++. ..+..+++|++|++++|+++.++.. +..+++|++|++++|.++.+.... .++|+.|++ .+.+..++
T Consensus 372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC
T ss_pred cccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---cCCceEEECCCCChhhhc
Confidence 9998764 5689999999999999999987654 788999999999999988654332 258899999 67666654
Q ss_pred hhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCCCCC
Q 009136 491 TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539 (542)
Q Consensus 491 ~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~~~ 539 (542)
..+++|++|++++|+++.+|. ...+++|+.|++++|+++.+|+..
T Consensus 448 ---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp ---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred ---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHH
Confidence 578999999999999999987 578999999999999999988864
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-40 Score=349.82 Aligned_cols=419 Identities=20% Similarity=0.250 Sum_probs=270.0
Q ss_pred cCCcEEEcCCCccc-chhHhhcCCCCCcEEEc-CCCCCCcc---------------------------------------
Q 009136 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL--------------------------------------- 83 (542)
Q Consensus 45 ~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l-~~~~~~~l--------------------------------------- 83 (542)
.+++.|+|+++.+. .+|.++.++++|++|+| ++|.+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999987 78899999999999999 66633210
Q ss_pred --hHhh-----------hCCCCCcEEecCC--CccccCCccccccCCccEEEcCCCcCCc------------------CC
Q 009136 84 --PAAI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (542)
Q Consensus 84 --~~~~-----------~~l~~L~~L~l~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~------------------~~ 130 (542)
+..+ .....++.+.+.. |.++.+|..++++++|++|++++|+++. +|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0001 1111233333332 4555677777778888888888877776 77
Q ss_pred cccc--CCCCCCeEEccCCccc-cCCcccccCCCccEEEccCCc-ccc-cchhhhhcc-------ccCcEEEcCCcccCc
Q 009136 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW-------TMLTELIASKNLLNG 198 (542)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~ 198 (542)
..++ ++++|++|++++|.+. .+|..+..+++|+.|++++|+ ++. ..+..+..+ ++|++|++++|.+..
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ 562 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc
Confidence 7766 7777777777777644 566677777777777777776 554 222223333 377777777777777
Q ss_pred ccc--ccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCC-ccEEEcCCCcCcccchhhhcc
Q 009136 199 MPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL 275 (542)
Q Consensus 199 ~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~ 275 (542)
+|. .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.++.++......
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~ 641 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhcc
Confidence 776 6777777777777777776666 666777777777777777766666666666 777777666665444332221
Q ss_pred ---cccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009136 276 ---RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (542)
Q Consensus 276 ---~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (542)
.|+.+++++|.+.+.++.+. .. ..
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~-----------------------~~------------------------------l~ 668 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNIS-----------------------CS------------------------------MD 668 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCS-----------------------SC------------------------------TT
T ss_pred ccCCCCEEECcCCcCCCccccch-----------------------hh------------------------------hc
Confidence 14444554444433211111 00 00
Q ss_pred hcccccccEEEecCCCCCCCCcccc-ccCCccEEECCCCcccccChhcc--------cCccCcEEEccCCcCCCCChhhh
Q 009136 353 TRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELS--------SCASLQTLILSRNKIKDWPDAIL 423 (542)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~--------~~~~L~~L~l~~~~l~~~~~~~l 423 (542)
.....+++.+++++|.+..+|..+. .+++|++|++++|.++.+|..+. +|++|++|++++|.++.++....
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence 0011245666666666666666655 46788888888888877776432 23378888888888887765542
Q ss_pred -hCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhc-cccCchhhhcCCCCCE
Q 009136 424 -TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDILRLQQLRI 501 (542)
Q Consensus 424 -~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~ 501 (542)
..+++|+.|+|++|++..++. .+..+++|+.|++++|... . .+. ...+|..+.++++|+.
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~l-------s----------~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDA-------E----------GNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp TTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCT-------T----------CCBCCCCCCTTGGGCSSCCE
T ss_pred hccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCc-------c----------cccccccChHHHhcCCCCCE
Confidence 378888888888888887643 4667888888888775410 0 111 1345666677788888
Q ss_pred EeCCCCcccccCccccCCCCCCEEECCCCcCCcCCC
Q 009136 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537 (542)
Q Consensus 502 L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~ 537 (542)
|++++|+++.+|..+. ++|+.|+|++|++.+++.
T Consensus 811 L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 811 LQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp EECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred EECCCCCCCccCHhhc--CCCCEEECCCCCCCccCh
Confidence 8888888877777654 578888888888776553
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-40 Score=350.36 Aligned_cols=295 Identities=18% Similarity=0.244 Sum_probs=238.7
Q ss_pred HhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEc-CCCcccch--------------------------
Q 009136 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLIL-AHNNIEKL-------------------------- 60 (542)
Q Consensus 9 ~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~l-------------------------- 60 (542)
..++.|+++++++. .+|..+.. +++|++|++ ++|.+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-------------L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~ 389 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-------------LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-------------CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred CCEEEEECccCCCCCcCchHHhc-------------cccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence 45788999999998 78876655 899999999 66644311
Q ss_pred ---------------hHhhc-----------CCCCCcEEEcCC--CCCCcchHhhhCCCCCcEEecCCCcccc-------
Q 009136 61 ---------------KEDLR-----------NLPLLTVLNVSH--NKLSELPAAIGELHMLKSLDVSFNSIMK------- 105 (542)
Q Consensus 61 ---------------~~~l~-----------~~~~L~~L~l~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~------- 105 (542)
+..+. ....++.+.+.. |.++.+|..+.++++|++|+|++|.++.
T Consensus 390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~ 469 (876)
T 4ecn_A 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW 469 (876)
T ss_dssp HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccc
Confidence 01111 111222222222 4555689999999999999999999998
Q ss_pred -----------CCcccc--ccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCc-ccc--CCccccc-------CCC
Q 009136 106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLAD-------CSK 161 (542)
Q Consensus 106 -----------l~~~~~--~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~-------~~~ 161 (542)
+|..++ ++++|++|++++|.+. .+|..+.++++|++|++++|. +.. +|..++. +++
T Consensus 470 ~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence 999987 9999999999999865 788899999999999999998 774 6665554 459
Q ss_pred ccEEEccCCcccccch-hhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCC-CcEEEcCC
Q 009136 162 MSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN 239 (542)
Q Consensus 162 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~ 239 (542)
|++|++++|.+..++. ..+..+++|++|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 9999999999997776 35999999999999999999999 899999999999999999999989999999 99999999
Q ss_pred CcCcccchhccCCCC--ccEEEcCCCcCcccchhh-------hcccccEEEccCCCCCCCChhhc-CcCCCcEEEcCCCc
Q 009136 240 NALSALPAELGKLSK--LGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLSGLPPEIG-KMTTLRKLLLTGNP 309 (542)
Q Consensus 240 ~~~~~~~~~~~~~~~--L~~L~l~~~~i~~~~~~~-------~~~~L~~l~l~~~~l~~l~~~l~-~~~~L~~L~l~~~~ 309 (542)
|.+..+|..+...+. |+.|++++|.+....... ...+|+.|++++|.+..+|..+. .+++|+.|++++|.
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 999999988777654 999999999987543221 12359999999999999988764 78999999999998
Q ss_pred cccccccc
Q 009136 310 LRTLRSSL 317 (542)
Q Consensus 310 ~~~~~~~~ 317 (542)
+..++...
T Consensus 709 L~~ip~~~ 716 (876)
T 4ecn_A 709 MTSIPENS 716 (876)
T ss_dssp CSCCCTTS
T ss_pred CCccChHH
Confidence 87665443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.6e-40 Score=342.52 Aligned_cols=412 Identities=19% Similarity=0.251 Sum_probs=278.9
Q ss_pred cCCcEEEcCCCccc-chhHhhcCCCCCcEEEcCCCCCC-------------cchHhh---------------------h-
Q 009136 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAAI---------------------G- 88 (542)
Q Consensus 45 ~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~-------------~l~~~~---------------------~- 88 (542)
.+++.|+++++.+. .+|.++.++++|++|++++|.+. .+|... .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999987 78899999999999999999651 111110 0
Q ss_pred ------------------CCCCCcEEecC--CCccccCCccccccCCccEEEcCCCcCCc------------------CC
Q 009136 89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (542)
Q Consensus 89 ------------------~l~~L~~L~l~--~~~~~~l~~~~~~l~~L~~L~l~~~~~~~------------------~~ 130 (542)
....++.+.+. .|.++.+|..++++++|++|++++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 01112222222 34555677777788888888888887776 77
Q ss_pred cccc--CCCCCCeEEccCCccc-cCCcccccCCCccEEEccCCc-ccc-cchhhhhcc------ccCcEEEcCCcccCcc
Q 009136 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW------TMLTELIASKNLLNGM 199 (542)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~ 199 (542)
..++ ++++|++|++++|.+. .+|..++.+++|++|++++|+ ++. ..+..+..+ ++|++|++++|.++.+
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 7777 7888888888877754 567777777888888888776 664 222334443 7777777777777777
Q ss_pred cc--ccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCC-ccEEEcCCCcCcccchhhhcc
Q 009136 200 PE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL 275 (542)
Q Consensus 200 ~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~ 275 (542)
|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++......
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 77 6777777777777777777 666 677777777777777777777777777777 777777777666554433222
Q ss_pred ---cccEEEccCCCCCC-CChhhc-------CcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccc
Q 009136 276 ---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (542)
Q Consensus 276 ---~L~~l~l~~~~l~~-l~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (542)
+|+.+++++|.+.+ .|..+. .+.+
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~--------------------------------------------- 434 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--------------------------------------------- 434 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC---------------------------------------------
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCC---------------------------------------------
Confidence 35555555555544 222232 2333
Q ss_pred hhhhhhhhhcccccccEEEecCCCCCCCCccccc-cCCccEEECCCCcccccChhc-cc-------CccCcEEEccCCcC
Q 009136 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SS-------CASLQTLILSRNKI 415 (542)
Q Consensus 345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~-~~-------~~~L~~L~l~~~~l 415 (542)
++.++++++.+..+|..+.. +++|++|++++|.++.+|..+ .. +++|++|++++|.+
T Consensus 435 --------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 435 --------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp --------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred --------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 45555555555555555443 678888888888887777643 22 22788888888888
Q ss_pred CCCChhhh-hCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhc-cccCchhh
Q 009136 416 KDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDI 493 (542)
Q Consensus 416 ~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~l 493 (542)
+.++.... ..+++|++|++++|++..++ ..+..+++|+.|++++|+... .+. ...+|..+
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~~ls-----------------~N~l~~~~p~~l 562 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQ-----------------GNRTLREWPEGI 562 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCSSCC-CGGGGCSSCCEEECCSCBCTT-----------------CCBCCCCCCTTG
T ss_pred CccChhhhhccCCCcCEEECCCCCCCCcC-hhhhcCCCCCEEECCCCcccc-----------------cCcccccChHHH
Confidence 87765543 37888888888888888754 346778888888886654100 111 13456666
Q ss_pred hcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCC
Q 009136 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 536 (542)
Q Consensus 494 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp 536 (542)
..+++|++|++++|+++.+|..+. ++|+.|++++|++..++
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred hcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 777888888888888888877654 78888888888877654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-40 Score=343.94 Aligned_cols=415 Identities=19% Similarity=0.268 Sum_probs=336.1
Q ss_pred HhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccc-------------hh-------------
Q 009136 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-------------LK------------- 61 (542)
Q Consensus 9 ~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------l~------------- 61 (542)
..++.|+++++++. .+|..+.. +++|++|++++|.+.. +|
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-------------L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~ 147 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-------------LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-------------CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHH
T ss_pred CCEEEEEecCcccCCcCChHHhc-------------CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHH
Confidence 35788999999987 77766654 8999999999996510 00
Q ss_pred --------Hhhc-------------------CCCCCcEEEcC--CCCCCcchHhhhCCCCCcEEecCCCcccc-------
Q 009136 62 --------EDLR-------------------NLPLLTVLNVS--HNKLSELPAAIGELHMLKSLDVSFNSIMK------- 105 (542)
Q Consensus 62 --------~~l~-------------------~~~~L~~L~l~--~~~~~~l~~~~~~l~~L~~L~l~~~~~~~------- 105 (542)
..+. ....++.+.+. +|.++.+|..+.++++|++|++++|.++.
T Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp HHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc
Confidence 0000 01112222221 35666788899999999999999999997
Q ss_pred -----------CCcccc--ccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCc-ccc--CCcccccC------CCc
Q 009136 106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC------SKM 162 (542)
Q Consensus 106 -----------l~~~~~--~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~------~~L 162 (542)
+|..++ ++++|++|++++|.+. .+|..+.++++|++|++++|. ++. +|..++.+ ++|
T Consensus 228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 999988 9999999999999866 788899999999999999998 774 77777665 999
Q ss_pred cEEEccCCcccccch-hhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCccCCCCCcCCCC-CcEEEcCC
Q 009136 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN 239 (542)
Q Consensus 163 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~ 239 (542)
++|++++|.++.++. ..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 999999999997765 25899999999999999998 888 888899999999999999999999999999 99999999
Q ss_pred CcCcccchhccCCC--CccEEEcCCCcCcccchhhhc---------ccccEEEccCCCCCCCChhh-cCcCCCcEEEcCC
Q 009136 240 NALSALPAELGKLS--KLGTLDLHSNQLKEYCVEACQ---------LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTG 307 (542)
Q Consensus 240 ~~~~~~~~~~~~~~--~L~~L~l~~~~i~~~~~~~~~---------~~L~~l~l~~~~l~~l~~~l-~~~~~L~~L~l~~ 307 (542)
|.+..+|..+...+ +|++|++++|.+......... .+|+.+++++|.++.+|..+ ..+++|+.|++++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 99999988777655 899999999998864333222 35999999999999988764 5689999999999
Q ss_pred CccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcccc--ccCCccEE
Q 009136 308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW--EAGEITKL 385 (542)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~--~~~~L~~L 385 (542)
|.+..++...+....+ .....++++++++++|.++.+|..+. .+++|++|
T Consensus 467 N~l~~i~~~~~~~~~~----------------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 467 NMLTEIPKNSLKDENE----------------------------NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518 (636)
T ss_dssp SCCSBCCSSSSEETTE----------------------------ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEE
T ss_pred CCCCCcCHHHhccccc----------------------------cccccCCccEEECcCCcCCccChhhhhccCCCcCEE
Confidence 9988665444322100 00112378999999999999998887 89999999
Q ss_pred ECCCCcccccChhcccCccCcEEEcc------CCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecC
Q 009136 386 DLSRNSIQELPPELSSCASLQTLILS------RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (542)
Q Consensus 386 ~l~~~~l~~l~~~~~~~~~L~~L~l~------~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 459 (542)
++++|.++.+|..+..+++|++|+++ +|.+.+..+..+..+++|++|++++|++..++.. +. ++|+.|+++
T Consensus 519 ~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls 595 (636)
T 4eco_A 519 DLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-IT--PNISVLDIK 595 (636)
T ss_dssp ECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--TTCCEEECC
T ss_pred ECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-Hh--CcCCEEECc
Confidence 99999999999989999999999994 5667776677789999999999999999888765 33 899999999
Q ss_pred CCcCCCCCC
Q 009136 460 YNIASLPEN 468 (542)
Q Consensus 460 ~n~~~~~~~ 468 (542)
+|++..+..
T Consensus 596 ~N~l~~~~~ 604 (636)
T 4eco_A 596 DNPNISIDL 604 (636)
T ss_dssp SCTTCEEEC
T ss_pred CCCCccccH
Confidence 998875543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-39 Score=341.51 Aligned_cols=474 Identities=21% Similarity=0.260 Sum_probs=349.8
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchH-hhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~-~~~~ 89 (542)
.+.+|++.+++++|.++. +++++|++++|.++.++ .+|.++++|++|++++|.++.++. +|.+
T Consensus 34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence 467999999999998873 46999999999999887 579999999999999999998854 8999
Q ss_pred CCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc--CCcccccCCCccEE
Q 009136 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L 165 (542)
+++|++|+|++|+++.+|. .|.++++|++|++++|+++.++. .++++++|++|++++|.+.. ++..+..+++|++|
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999999999998865 58999999999999999998875 58899999999999999874 46778899999999
Q ss_pred EccCCcccccchhhhhccccCc----EEEcCCcccCccccccCCCCcccEEEccCCCCc--cCCC---------------
Q 009136 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS--------------- 224 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~--------------- 224 (542)
++++|++..+....+..+.+++ .++++.+.++.++........+..+++.++... ..+.
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 9999999988877777665543 678888888766554444445555555554322 0001
Q ss_pred ---------------CCcCCCCCcEEEcCCCcCc----ccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCC
Q 009136 225 ---------------SISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (542)
Q Consensus 225 ---------------~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~ 285 (542)
.+.....+....+..+... ..+..+....+++.+.+.++.+...........++.+++.+|
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence 1111222222222211111 112223334455555555555444444333344555555555
Q ss_pred CCCCCCh--------------------hhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccch
Q 009136 286 SLSGLPP--------------------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (542)
Q Consensus 286 ~l~~l~~--------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (542)
.+..++. ....+++|+.++++.|.+......
T Consensus 339 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~----------------------------- 389 (635)
T 4g8a_A 339 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC----------------------------- 389 (635)
T ss_dssp EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC-----------------------------
T ss_pred cccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc-----------------------------
Confidence 4443321 123455555555555554322100
Q ss_pred hhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccC--hhcccCccCcEEEccCCcCCCCChhhh
Q 009136 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAIL 423 (542)
Q Consensus 346 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~~~l 423 (542)
.........++.+++..+.....+..+..+++|+.+++..++..... ..+..+++++.++++.|.+.......+
T Consensus 390 ----~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 390 ----SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp ----CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ----ccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 01112235678888888887777777778899999999988765533 257889999999999999999888888
Q ss_pred hCCCCCcEEEccCCCCc-ccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCc-hhhhcCCCCC
Q 009136 424 TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP-TDILRLQQLR 500 (542)
Q Consensus 424 ~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~-~~l~~~~~L~ 500 (542)
..+++|+.|++++|.+. .+.+..|..+++|++|++++|+++.+.+..|.++++|++|++ .+.+..++ ..+..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 99999999999999744 455667899999999999999999998999999999999999 77888775 4588899999
Q ss_pred EEeCCCCccccc-CccccCC-CCCCEEECCCCcCC
Q 009136 501 ILDLSQNSLQSI-PEGFKNL-TSLTELDLSDNNIS 533 (542)
Q Consensus 501 ~L~l~~~~l~~l-~~~l~~~-~~L~~L~l~~~~l~ 533 (542)
.|++++|+++.+ |+.+..+ ++|+.|++++|+++
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999987 6678888 58999999999874
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-40 Score=339.47 Aligned_cols=446 Identities=22% Similarity=0.251 Sum_probs=303.4
Q ss_pred cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch-HhhhCCCCCcEEecCCCccccC-CccccccCCccEEEcC
Q 009136 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCS 122 (542)
Q Consensus 45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~ 122 (542)
...++++++++.++.+|..+. ++|++|++++|.+..++ .+|..+++|++|++++|.++.+ |..|..+++|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 344666666666666665443 56666666666666553 3566666666666666666644 4456666666666666
Q ss_pred CCcCCcCCccccCCCCCCeEEccCCccccCC--cccccCCCccEEEccCCcccccchhhhhccccC--cEEEcCCccc--
Q 009136 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL-- 196 (542)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-- 196 (542)
+|+++.+|.. .+++|++|++++|.+..++ ..+..+++|++|++++|.+.... +..++++ ++|++++|.+
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccc
Confidence 6666665544 5666666666666666543 45666666666666666665422 4444444 6667766665
Q ss_pred Cc-cccccCCCC-cccEEEccCCCCcc-CC-CCCcCCCCCcEEEcCCCcCc-----ccchhccCCCCccEEEcCCCcCcc
Q 009136 197 NG-MPETIGSLS-RLIRLDLHQNRILS-IP-SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE 267 (542)
Q Consensus 197 ~~-~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~ 267 (542)
.. .|..+..+. ..-.+++.+|.+.. ++ ..+..+++|+.+++++|... .....+..+++++.+++.++.+..
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 22 333333322 11144555555442 21 23456777788888777422 233456777888888777766553
Q ss_pred -----cchhhhcccccEEEccCCCCC-CCChhh-----cCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCC
Q 009136 268 -----YCVEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336 (542)
Q Consensus 268 -----~~~~~~~~~L~~l~l~~~~l~-~l~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (542)
.+......+++++++++|.++ .+|..+ ..++.|+.+++..+.+ .++.. ....
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~--------~~~~-------- 326 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE--------ALYS-------- 326 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH--------HHHH--------
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh--------hhhh--------
Confidence 222333346889999988887 566655 4555555555555443 11100 0000
Q ss_pred CccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccc-cChhcccCccCcEEEccCCcC
Q 009136 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKI 415 (542)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l 415 (542)
......+++++++++.+...+. ...+++|++|++++|.++. +|..+..+++|++|++++|.+
T Consensus 327 ----------------~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 327 ----------------VFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp ----------------HHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred ----------------hhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence 0012468899999998875542 2467899999999999887 677889999999999999999
Q ss_pred CCCCh--hhhhCCCCCcEEEccCCCCcc-cCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch
Q 009136 416 KDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT 491 (542)
Q Consensus 416 ~~~~~--~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~ 491 (542)
++++. ..+..+++|++|++++|++.. ++...+..+++|++|++++|+++...+..+. ++|+.|++ .+.+..+|.
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~ 467 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPK 467 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCT
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccCh
Confidence 98764 457899999999999999988 7777789999999999999998755444333 68999999 888899999
Q ss_pred hhhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCC
Q 009136 492 DILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 492 ~l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~ 533 (542)
.+..+++|+.|++++|+++.+|.. +..+++|+.|++++|+++
T Consensus 468 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 988999999999999999999887 999999999999999986
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=337.21 Aligned_cols=423 Identities=22% Similarity=0.207 Sum_probs=299.2
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchHhh
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~ 87 (542)
++++.|+++++.+++++...+.. +++|++|++++|.+..+ |++|..+++|++|++++|.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence 57899999999999998776665 78899999999999977 78999999999999999999998777
Q ss_pred hCCCCCcEEecCCCcccc--CCccccccCCccEEEcCCCcCCcCCccccCCCCC--CeEEccCCcc--c-cCCcccccCC
Q 009136 88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS 160 (542)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~l~~~~~~~~ 160 (542)
.+++|++|++++|.++. +|..++.+++|++|++++|.+.. ..+..+++| ++|++++|.+ . ..+..+..+.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999985 57899999999999999999876 456777888 9999999988 3 4455555544
Q ss_pred -CccEEEccCCccc-ccchhhhhccccCcEEEcCCcc-------cCccccccCCCCcccEEEccCCCCcc-----CCCCC
Q 009136 161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI 226 (542)
Q Consensus 161 -~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~ 226 (542)
+...+++++|.+. .+....+..+++|+.+++++|. +......+..+++|+.+++.++.+.. ++...
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 3445667777655 3455557788999999998885 33222367778889999998877652 11111
Q ss_pred cCCCCCcEEEcCCCcCc-ccchhc-----cCCCCccEEEcCCCcCcccchhh-----hcccccEEEccCCCCCCCChhhc
Q 009136 227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEA-----CQLRLSVLDLSNNSLSGLPPEIG 295 (542)
Q Consensus 227 ~~~~~L~~l~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~~~i~~~~~~~-----~~~~L~~l~l~~~~l~~l~~~l~ 295 (542)
..++|+.+++++|.+. .+|..+ ..+++|+.+++++|.+ .++... ...+++.+++++|.+...+. ..
T Consensus 245 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 321 (520)
T 2z7x_B 245 -WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS 321 (520)
T ss_dssp -HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred -hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence 2458999999999888 777777 7888888888888877 444211 11347888888887766532 24
Q ss_pred CcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcc
Q 009136 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375 (542)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 375 (542)
.+++|++|++++|.+... +|..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~----------------------------------------------------------~~~~ 343 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDT----------------------------------------------------------VFEN 343 (520)
T ss_dssp SCCCCCEEECCSSCCCTT----------------------------------------------------------TTTT
T ss_pred hCCcccEEEeECCccChh----------------------------------------------------------hhhh
Confidence 667777777777765431 2333
Q ss_pred ccccCCccEEECCCCcccc---cChhcccCccCcEEEccCCcCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCC
Q 009136 376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (542)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 451 (542)
+..+++|++|++++|.++. +|..+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.....+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 4445566666666666553 23345566666666666666665 4444455566666666666665433222121 4
Q ss_pred CCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccc
Q 009136 452 MLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQS 511 (542)
Q Consensus 452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~ 511 (542)
+|+.|++++|+++.+ +..+..+++|++|++ .+.+..+|.. +..+++|++|++++|++..
T Consensus 422 ~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 666666666666533 333335666666666 5555566655 6678999999999998773
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-37 Score=306.94 Aligned_cols=405 Identities=23% Similarity=0.262 Sum_probs=240.1
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCC-cchHhhhCCCCC-------------cEEecCCCccccCCcc
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHML-------------KSLDVSFNSIMKIPDE 109 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L-------------~~L~l~~~~~~~l~~~ 109 (542)
.++|++|+++++.++.+|.++.++++|++|++++|.+. .+|..+..+.+| ++|++++|.++.+|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 57899999999999889988999999999999888776 567777776654 8888888888877663
Q ss_pred ccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEE
Q 009136 110 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189 (542)
Q Consensus 110 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 189 (542)
.++|++|++++|.++.+|.. .++|++|++++|.+..++.. .++|++|++++|.++.++ .++.+++|++|
T Consensus 90 ---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L 158 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP--ELQNSSFLKII 158 (454)
T ss_dssp ---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEE
T ss_pred ---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc--ccCCCCCCCEE
Confidence 36788888888888877653 36888888888887766532 268888888888887766 37888888888
Q ss_pred EcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccc
Q 009136 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269 (542)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 269 (542)
++++|.++.+|... .+|+.|++++|.+..+| .+..+++|+.+++++|.+..+|... ++|++|++++|.++.++
T Consensus 159 ~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP 231 (454)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC
T ss_pred ECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc
Confidence 88888887777543 47888888888887776 5778888888888888877766532 57888888888777766
Q ss_pred hhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhh
Q 009136 270 VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349 (542)
Q Consensus 270 ~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (542)
.......|+.+++++|.++++|.. .++|+.+++++|.+..++.
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~---------------------------------- 274 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPE---------------------------------- 274 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCC----------------------------------
T ss_pred ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCc----------------------------------
Confidence 543444588888888877776653 3677888888877654321
Q ss_pred hhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (542)
Q Consensus 350 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L 429 (542)
.+.++++++++++.+..++.. .++|++|++++|.++.++.. .++|++|++++|++++++. .+++|
T Consensus 275 -----~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~----~~~~L 339 (454)
T 1jl5_A 275 -----LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA----LPPRL 339 (454)
T ss_dssp -----CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred -----ccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc----cCCcC
Confidence 124577888888877765432 36788888888877765531 2478888888888877654 25788
Q ss_pred cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCC--CCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCC
Q 009136 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL--PENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQN 507 (542)
Q Consensus 430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~ 507 (542)
++|++++|.++.++. .+++|++|++++|+++. ..+..+..+. .......+|. .+++|+.|++++|
T Consensus 340 ~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~------~n~~~~~i~~---~~~~L~~L~ls~N 406 (454)
T 1jl5_A 340 ERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLR------MNSHLAEVPE---LPQNLKQLHVETN 406 (454)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEE------CCC-----------------------
T ss_pred CEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhh------hccccccccc---ccCcCCEEECCCC
Confidence 888888888877664 36788888888887776 3333333221 1111123333 2478888999998
Q ss_pred cccccCccccCCCCCCEEECCCCcCCc
Q 009136 508 SLQSIPEGFKNLTSLTELDLSDNNISA 534 (542)
Q Consensus 508 ~l~~l~~~l~~~~~L~~L~l~~~~l~~ 534 (542)
+++.+|. + -++++.|.+.+|.+..
T Consensus 407 ~l~~~~~-i--P~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 407 PLREFPD-I--PESVEDLRMNSERVVD 430 (454)
T ss_dssp ---------------------------
T ss_pred cCCcccc-c--hhhHhheeCcCcccCC
Confidence 8875432 1 1357777888877653
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.9e-37 Score=304.95 Aligned_cols=405 Identities=24% Similarity=0.270 Sum_probs=282.5
Q ss_pred HHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhhcCCCC-------------CcEE
Q 009136 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPL-------------LTVL 73 (542)
Q Consensus 8 ~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~-------------L~~L 73 (542)
.+.+++++++++.++++|.++.. +++|++|++++|.+. .+|..+..+++ +++|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred cccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence 57899999999999999988755 899999999999887 67888877775 4999
Q ss_pred EcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC
Q 009136 74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153 (542)
Q Consensus 74 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 153 (542)
++++|.++.+|.. .++|++|++++|.++.+|.. .++|++|++++|++..++.. .++|++|++++|.+..+|
T Consensus 77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 77 ELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred EecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence 9999999988762 47899999999999988864 47899999999999887643 269999999999999988
Q ss_pred cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCc
Q 009136 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233 (542)
Q Consensus 154 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 233 (542)
.++.+++|++|++++|.++.++.. ..+|++|++++|.++.+| .+..+++|+.|++++|.+..+|... ++|+
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE 218 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence 699999999999999999876542 359999999999999988 6899999999999999998876543 5999
Q ss_pred EEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccc
Q 009136 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (542)
Q Consensus 234 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~ 313 (542)
.+++++|.+..+|. +..+++|++|++++|.++.++.. ...++.+++++|.+.++|.. .++|+.+++++|.+..+
T Consensus 219 ~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 219 SIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp EEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred EEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence 99999999998885 88999999999999999987653 36799999999999998764 47899999999988654
Q ss_pred cccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCccc
Q 009136 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393 (542)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 393 (542)
+. .++++++++++++.+..++.. .++|++|++++|.++
T Consensus 293 ~~---------------------------------------~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 293 SE---------------------------------------LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLI 330 (454)
T ss_dssp SC---------------------------------------CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCS
T ss_pred cC---------------------------------------cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccc
Confidence 31 124789999999988865431 358999999999999
Q ss_pred ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCC
Q 009136 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS 473 (542)
Q Consensus 394 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 473 (542)
.+|.. +++|++|++++|.++.++. .+++|++|++++|++..++.. ...+..|.. |......+ ..
T Consensus 331 ~lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~i----p~~l~~L~~--n~~~~~i~---~~ 394 (454)
T 1jl5_A 331 ELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PESVEDLRM--NSHLAEVP---EL 394 (454)
T ss_dssp CCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTTCCEEEC--CC-----------
T ss_pred ccccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCC----hHHHHhhhh--cccccccc---cc
Confidence 98864 6899999999999998876 479999999999999875421 123333332 32222222 13
Q ss_pred CchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCccc
Q 009136 474 LPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 474 ~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 510 (542)
+++|+.|++ .+.+..+|.. ..+++.|.+++|.+.
T Consensus 395 ~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp --------------------------------------
T ss_pred cCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence 467777777 5555433221 245777788887655
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.6e-38 Score=321.04 Aligned_cols=441 Identities=20% Similarity=0.200 Sum_probs=328.9
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHh
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA 86 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~ 86 (542)
...+.+|+++++++++|.+++ +++++|++++|.+..++ .+|..+++|++|++++|.++.+ |.+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred CCCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 344789999999999998774 47999999999999876 6899999999999999999987 668
Q ss_pred hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCC--ccccCCCCCCeEEccCCccccCCcccccCCCc--
Q 009136 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM-- 162 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L-- 162 (542)
|..+++|++|++++|.++.+|.. .+++|++|++++|++..++ ..+.++++|++|++++|.+... .+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L 171 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHL 171 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCE
T ss_pred hCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhcee
Confidence 99999999999999999999877 8999999999999999764 6899999999999999998753 45556666
Q ss_pred cEEEccCCcc--cccchhhhhccc-cCcEEEcCCcccCc-cc-cccCCCCcccEEEccCCCCc-----cCCCCCcCCCCC
Q 009136 163 SKLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-MP-ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL 232 (542)
Q Consensus 163 ~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L 232 (542)
++|++++|.+ .......+..+. ..-.+++++|.+.. ++ ..+..+++|+.+++++|... .....+...+++
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 9999999988 555544455443 12245677776643 22 34567888999999887521 222345667777
Q ss_pred cEEEcCCCcCc-----ccchhccCCCCccEEEcCCCcCc-ccchhhhc---cc---ccEEEccCCCCCCCCh-hhc---C
Q 009136 233 AEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LR---LSVLDLSNNSLSGLPP-EIG---K 296 (542)
Q Consensus 233 ~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~---~~---L~~l~l~~~~l~~l~~-~l~---~ 296 (542)
+.+++.++.+. .++..+ ..++|++|++++|.+. .++...+. .. |+.+++..+.+ .+|. .+. .
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhc
Confidence 77777766555 222222 2347888888888776 44443311 22 44444444544 4442 222 2
Q ss_pred cCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCC-CCcc
Q 009136 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSE 375 (542)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~ 375 (542)
..+++.+++++|.+..... ....+++++++++++.+.. ++..
T Consensus 330 ~~~L~~L~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVC-------------------------------------PPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp TCCCSEEEEESSCCCCCCC-------------------------------------CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred cCcceEEEccCCCcccccC-------------------------------------ccCCCCceEEECCCCccccchhhh
Confidence 2568888888876633210 0123567888888888775 6667
Q ss_pred ccccCCccEEECCCCcccccC---hhcccCccCcEEEccCCcCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCC
Q 009136 376 IWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (542)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 451 (542)
+..+++|++|++++|.++.++ ..+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.....+. +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 778889999999999888755 457888999999999999887 7777778889999999999988754332222 6
Q ss_pred CCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCccc
Q 009136 452 MLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~ 510 (542)
+|++|++++|+++.+... +..+++|+.|++ .+.+..+|.. +..+++|+.|++++|++.
T Consensus 451 ~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred cCCEEECCCCcCcccChh-hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 899999999988865444 448899999999 7888888887 888999999999999876
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.8e-36 Score=315.16 Aligned_cols=475 Identities=20% Similarity=0.191 Sum_probs=358.0
Q ss_pred CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCc-cccccCCccEEEcCCC
Q 009136 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSN 124 (542)
Q Consensus 47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~ 124 (542)
-++.+.++..++++|..++ +++++|+|++|.++.++. +|.++++|++|+|++|.++.+++ +|.++++|++|++++|
T Consensus 33 ~~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 33 NITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TTEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 4567888888999997765 489999999999999865 89999999999999999998854 6899999999999999
Q ss_pred cCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccc-hhhhhccccCcEEEcCCcccCccc-
Q 009136 125 QLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMP- 200 (542)
Q Consensus 125 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~- 200 (542)
+++.+|. .|.++++|++|++++|.+..++.. ++.+++|++|++++|.+..+. +..+..+++|++|++++|.++.++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 9998875 578999999999999999988764 899999999999999998654 455788999999999999997764
Q ss_pred cccCCCCc----ccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCccEEEcC-------------
Q 009136 201 ETIGSLSR----LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLH------------- 261 (542)
Q Consensus 201 ~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~------------- 261 (542)
..+..+.+ ...++++.|.+..++........++.+++.++... ..+..+..+..++...+.
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 33433332 45788899988877666556666777888777544 222334444444433321
Q ss_pred -----------------CCcCc----cc-chhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccC
Q 009136 262 -----------------SNQLK----EY-CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319 (542)
Q Consensus 262 -----------------~~~i~----~~-~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 319 (542)
.+... .. ........++.+++.++.+..++. +.....++.+++.++.+..+....+.
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~ 349 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLK 349 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcccch
Confidence 11100 00 011112237778877776665543 66678899999999887655432211
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC---CCCccccccCCccEEECCCCcccccC
Q 009136 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELP 396 (542)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~ 396 (542)
. +.......... .........+.++.++++++.+. ..+.......+++++++..+....++
T Consensus 350 ~------------L~~l~l~~n~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~ 413 (635)
T 4g8a_A 350 S------------LKRLTFTSNKG----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS 413 (635)
T ss_dssp T------------CCEEEEESCCS----CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred h------------hhhcccccccC----CCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc
Confidence 1 00000000000 00001112467888999888775 34455566789999999999888888
Q ss_pred hhcccCccCcEEEccCCcCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcC-CCCCCCCCCCC
Q 009136 397 PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSL 474 (542)
Q Consensus 397 ~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~ 474 (542)
..+..+++|+.++++++.... .+...+..+++++.+++++|.+..+....+..+++|+.|++++|.. ....+..|..+
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 788899999999999886654 4455678999999999999999988888899999999999999964 44567789999
Q ss_pred chhHHHHH-hhccccC-chhhhcCCCCCEEeCCCCccccc-CccccCCCCCCEEECCCCcCCcCCCCCC
Q 009136 475 PHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELV 540 (542)
Q Consensus 475 ~~L~~L~l-~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~lp~~~~ 540 (542)
++|++|++ .+.+..+ |..+.++++|++|++++|+++.+ +..|..+++|+.|++++|+|+.+++..+
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 99999999 7777766 56689999999999999999988 5569999999999999999998877643
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-35 Score=294.92 Aligned_cols=348 Identities=26% Similarity=0.399 Sum_probs=214.8
Q ss_pred CCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccC
Q 009136 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 146 (542)
Q Consensus 67 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 146 (542)
+++++.|++.++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +.++++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 4578888888888877763 6778888888888888887766 7788888888888888877765 77788888888888
Q ss_pred CccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCC
Q 009136 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226 (542)
Q Consensus 147 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 226 (542)
|.+..++. +..+++|++|++++|.+..+.. +..+++|++|+++ +.+..++. +..+++|+.|++++|.+..++ .+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l 195 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDIS-VL 195 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCCh-hh
Confidence 87777654 7777777888777777766543 6666777777764 33333322 555666666666666655442 34
Q ss_pred cCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcC
Q 009136 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306 (542)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~ 306 (542)
..+++|+.|++++|.+..++. ++.+++|++|++++|.++.++......+|+.+++++|.+.+++. +..+++|+.|+++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLG 273 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECC
Confidence 555566666666665554433 44455555555555555444332222334444444444443332 3333334444333
Q ss_pred CCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEE
Q 009136 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (542)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 386 (542)
+| .+..++. +..+++|++|+
T Consensus 274 ~n-----------------------------------------------------------~l~~~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 274 AN-----------------------------------------------------------QISNISP-LAGLTALTNLE 293 (466)
T ss_dssp SS-----------------------------------------------------------CCCCCGG-GTTCTTCSEEE
T ss_pred CC-----------------------------------------------------------ccCcccc-ccCCCccCeEE
Confidence 33 3333322 34456666777
Q ss_pred CCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCC
Q 009136 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466 (542)
Q Consensus 387 l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 466 (542)
+++|.++.++. +..+++|++|++++|.+++..+ +..+++|++|++++|++.++. .+..+++|+.|++++|++++.
T Consensus 294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC
T ss_pred cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCcc
Confidence 77666666554 5666667777777776666554 456667777777666666552 356666666666666665433
Q ss_pred CCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc
Q 009136 467 ENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 514 (542)
Q Consensus 467 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~ 514 (542)
.+ +..+++|+.|++++|.++.+|.
T Consensus 369 ~~------------------------~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 369 TP------------------------LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp GG------------------------GTTCTTCCEEECCCEEEECCCB
T ss_pred ch------------------------hhcCCCCCEEeccCCcccCCch
Confidence 21 3445677777777777665543
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.8e-35 Score=294.42 Aligned_cols=346 Identities=25% Similarity=0.358 Sum_probs=276.4
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
++++++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 467999999998888876 47788999999999998888866 8889999999999998888876 88899999999999
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 203 (542)
|.+..++. +.++++|++|++++|.+..++ .+..+++|++|+++ +.+..... +..+++|++|++++|.++.++ .+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l 195 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-VL 195 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence 98888764 888899999999999888765 47888999999986 34444433 888899999999999888775 47
Q ss_pred CCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEcc
Q 009136 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (542)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~ 283 (542)
..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+...+......+|+.++++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence 788899999999998886644 777899999999999988774 578889999999999998887765555669999999
Q ss_pred CCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEE
Q 009136 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (542)
Q Consensus 284 ~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (542)
+|.+.+++. +..+++|+.|++++|.+..++
T Consensus 274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~------------------------------------------------- 303 (466)
T 1o6v_A 274 ANQISNISP-LAGLTALTNLELNENQLEDIS------------------------------------------------- 303 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCCSCCG-------------------------------------------------
T ss_pred CCccCcccc-ccCCCccCeEEcCCCcccCch-------------------------------------------------
Confidence 999998876 788899999999888764331
Q ss_pred ecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccC
Q 009136 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443 (542)
Q Consensus 364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 443 (542)
.+..+++|++|++++|.+++++. +..+++|++|++++|.+++++ .+..+++|++|++++|++.++.
T Consensus 304 -----------~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 304 -----------PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp -----------GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG
T ss_pred -----------hhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccc
Confidence 13446677777777777776654 567777888888877777763 4677778888888877777665
Q ss_pred CCccCCCCCCceEecCCCcCCCC
Q 009136 444 SDGFKDIPMLQILDLSYNIASLP 466 (542)
Q Consensus 444 ~~~~~~~~~L~~L~l~~n~~~~~ 466 (542)
+ +..+++|+.|++++|.++..
T Consensus 370 ~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp G--GTTCTTCCEEECCCEEEECC
T ss_pred h--hhcCCCCCEEeccCCcccCC
Confidence 4 67777788888887777653
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-34 Score=289.54 Aligned_cols=380 Identities=22% Similarity=0.259 Sum_probs=226.7
Q ss_pred CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccc-cC-CccccccCCccEEEcCC
Q 009136 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS 123 (542)
Q Consensus 47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~ 123 (542)
-+.++.+++.++.+|. +. ++|++|++++|.++.+ +..+.++++|++|++++|.+. .+ +..|..+++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4568888888888876 33 7889999999988876 667888899999999888775 44 45688888888888888
Q ss_pred CcCCcC-CccccCCCCCCeEEccCCcccc-CCcc--cccCCCccEEEccCCcccccchh-hhhccccCcEEEcCCcccCc
Q 009136 124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG 198 (542)
Q Consensus 124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 198 (542)
|++..+ |..+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..+.+. .+..+++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 888755 5677788888888888887764 2222 66777777777777777766443 36666777777777766654
Q ss_pred cc-cccCCC--CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhh--
Q 009136 199 MP-ETIGSL--SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC-- 273 (542)
Q Consensus 199 ~~-~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-- 273 (542)
++ ..+..+ .+++.++++++.+..++...... .....+..+++|++|++++|.++.......
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhhc
Confidence 32 233222 44555555555544332211000 000112234556666666665543222111
Q ss_pred ---cccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhh
Q 009136 274 ---QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (542)
Q Consensus 274 ---~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (542)
..+++.+++++|...........+.. ..
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------~~------------------------------------ 265 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKD-------------PD------------------------------------ 265 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCC-------------CC------------------------------------
T ss_pred cccccceeeEeeccccccccccchhhhcc-------------Cc------------------------------------
Confidence 12244444444432211000000000 00
Q ss_pred hhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (542)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L 429 (542)
.........++|++|++++|.++.+ |..+..+++|++|++++|.++++++..+..+++|
T Consensus 266 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 266 --------------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp --------------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred --------------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 0000001134667777777766653 4456667777777777777776666666677777
Q ss_pred cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcc
Q 009136 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL 509 (542)
Q Consensus 430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l 509 (542)
++|++++|.+.++....|..+++|++|++++|.++...+..+. .+++|++|++++|++
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL----------------------GLPNLKELALDTNQL 383 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT----------------------TCTTCCEEECCSSCC
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc----------------------ccccccEEECCCCcc
Confidence 7777777777666656666677777777777766544433333 345666666666666
Q ss_pred cccCc-cccCCCCCCEEECCCCcCCc
Q 009136 510 QSIPE-GFKNLTSLTELDLSDNNISA 534 (542)
Q Consensus 510 ~~l~~-~l~~~~~L~~L~l~~~~l~~ 534 (542)
+.+|. .+..+++|+.|++++|+++.
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCHhHhccCCcccEEEccCCCccc
Confidence 66543 35666666666666666653
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.5e-35 Score=292.65 Aligned_cols=371 Identities=20% Similarity=0.248 Sum_probs=280.3
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCC-cc-hHhhh
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLS-EL-PAAIG 88 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~-~l-~~~~~ 88 (542)
+.+++++++++++|. + .++|++|++++|.+..+ |..|.++++|++|++++|.+. .+ +.+|.
T Consensus 13 ~~~~c~~~~l~~lp~-l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~ 76 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L---------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76 (455)
T ss_dssp TEEECCSSCCSSCCC-C---------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT
T ss_pred cccCcCCCCcccCCC-C---------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc
Confidence 468999999999998 3 35799999999999976 678999999999999999987 45 55899
Q ss_pred CCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCc-CCc--cccCCCCCCeEEccCCccccC-Ccc-cccCCCc
Q 009136 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPS--SLGRCLNLSDFKASNNCITSL-PED-LADCSKM 162 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~l-~~~-~~~~~~L 162 (542)
.+++|++|++++|.++.+ |..+..+++|++|++++|.+.. .+. .+..+++|++|++++|.+..+ +.. +..+++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 999999999999999865 7789999999999999999984 333 388899999999999999977 444 8899999
Q ss_pred cEEEccCCcccccchhhhhcc--ccCcEEEcCCcccCccccc---------cCCCCcccEEEccCCCCcc-CCCCCc---
Q 009136 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPET---------IGSLSRLIRLDLHQNRILS-IPSSIS--- 227 (542)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~-~~~~~~--- 227 (542)
++|++++|.+..+....+..+ .+++.++++++.+..++.. +..+++|+.|++++|.+.. .+..+.
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 999999999998877767766 7899999999999876532 2234566667776666552 222221
Q ss_pred CCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC-ChhhcCcCCCcEEEcC
Q 009136 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLT 306 (542)
Q Consensus 228 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~ 306 (542)
..++++.+++++|...........++.+. ...+ .......++.+++++|.+.++ +..+..+++|+.|+++
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPD-----NFTF----KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCC-----TTTT----GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccceeeEeeccccccccccchhhhccCc-----cccc----ccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence 12455566665554332111111110000 0000 000113466666666666653 4456667777777777
Q ss_pred CCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEE
Q 009136 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (542)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 386 (542)
+|.+..+. +..+..+++|++|+
T Consensus 308 ~n~l~~~~----------------------------------------------------------~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 308 QNEINKID----------------------------------------------------------DNAFWGLTHLLKLN 329 (455)
T ss_dssp TSCCCEEC----------------------------------------------------------TTTTTTCTTCCEEE
T ss_pred CCcccccC----------------------------------------------------------hhHhcCcccCCEEE
Confidence 76653321 23455678999999
Q ss_pred CCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136 387 LSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (542)
Q Consensus 387 l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 465 (542)
+++|.++.+ +..+..+++|++|++++|.++++.+..+..+++|++|++++|+++.++...+..+++|++|++++|.+..
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 999999886 4568899999999999999999888888999999999999999999888888999999999999998874
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-34 Score=286.28 Aligned_cols=361 Identities=20% Similarity=0.252 Sum_probs=206.3
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
+++|++|++++|.+..+| .+..+++|++|++++|.++.++ +..+++|++|++++|.++.++ ++.+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 566666666666666655 4666666666666666666653 566666666666666666553 55666666666666
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC-cccccchhhhhccccCcEEEcCCcccCccccc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (542)
|+++.++ +..+++|++|++++|.+..++ +..+++|++|++++| .+..+ .+..+++|++|++++|.++.+|
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~-- 186 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD-- 186 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--
T ss_pred CcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec--
Confidence 6666553 556666666666666665542 555566666666655 23332 1444555555555555555544
Q ss_pred cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEc
Q 009136 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (542)
Q Consensus 203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l 282 (542)
+..+++|+.|++++|.+..+ .+..+++|+.|++++|.+..+| +..+++|+ .+++
T Consensus 187 l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~----------------------~L~l 240 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLT----------------------YFDC 240 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCS----------------------EEEC
T ss_pred cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCC----------------------EEEe
Confidence 44445555555555554443 2444445555555555444443 34444444 4444
Q ss_pred cCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEE
Q 009136 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (542)
Q Consensus 283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (542)
++|.+++++ ...+++|+.++++++.+ +.+
T Consensus 241 ~~N~l~~~~--~~~l~~L~~L~l~~n~L-------------------------------------------------~~L 269 (457)
T 3bz5_A 241 SVNPLTELD--VSTLSKLTTLHCIQTDL-------------------------------------------------LEI 269 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTCCC-------------------------------------------------SCC
T ss_pred eCCcCCCcC--HHHCCCCCEEeccCCCC-------------------------------------------------CEE
Confidence 444444443 33455666666655543 233
Q ss_pred EecCCCCC-CCCccccccCCccEEECCCCcc-cccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136 363 SLEGMNLS-AIPSEIWEAGEITKLDLSRNSI-QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (542)
Q Consensus 363 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l-~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~ 440 (542)
+++++... .+| ...+++|+.|++++|.. ..+|. ..++|+.|++++ +++|++|++++|+++
T Consensus 270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ-------------NPKLVYLYLNNTELT 331 (457)
T ss_dssp CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-------------CTTCCEEECTTCCCS
T ss_pred ECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh-------------cccCCEEECCCCccc
Confidence 33443322 222 23467788888887753 33442 334555554443 478888888888888
Q ss_pred ccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCccc-ccCcc-cc
Q 009136 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG-FK 517 (542)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~l~~~-l~ 517 (542)
.+. +..+++|+.|++++|++++ ++.|+.|.+ .+.+... ..+..|+.+++++|+++ .+|.. +.
T Consensus 332 ~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 332 ELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp CCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhHhc
Confidence 762 7788888888888888865 244555555 3333222 24567788888888877 56554 33
Q ss_pred CCCCCCEEECC
Q 009136 518 NLTSLTELDLS 528 (542)
Q Consensus 518 ~~~~L~~L~l~ 528 (542)
...+.......
T Consensus 397 ~~~~~~~~~~~ 407 (457)
T 3bz5_A 397 QFGNPMNIEPG 407 (457)
T ss_dssp TTSCCCEEEES
T ss_pred ccCceeeccCC
Confidence 33444444433
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.7e-34 Score=282.26 Aligned_cols=355 Identities=25% Similarity=0.324 Sum_probs=290.2
Q ss_pred HHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch
Q 009136 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (542)
Q Consensus 5 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~ 84 (542)
+..++++++|+++++.++++| .+ .. +++|++|++++|.++.++ +..+++|++|++++|.++.++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l-~~------------l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GI-EK------------LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TG-GG------------CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred hhHcCCCCEEEccCCCcccCh-hh-cc------------cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 567889999999999999887 33 22 789999999999999885 889999999999999999885
Q ss_pred HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCc-cccCCcccccCCCcc
Q 009136 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMS 163 (542)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~ 163 (542)
+..+++|++|++++|.++.++ +..+++|++|++++|+++.++ +..+++|++|++++|. +..+ .+..+++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 889999999999999999886 889999999999999999874 8899999999999994 4455 578899999
Q ss_pred EEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc
Q 009136 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 243 (542)
+|++++|.++.++ +..+++|++|++++|.++.++ +..+++|+.|++++|.+..+| +..+++|+.+++++|.+.
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 9999999999875 788999999999999998874 788999999999999999986 889999999999999999
Q ss_pred ccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCC-CChhhcCcCCCcEEEcCCCccccccccccCCCc
Q 009136 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (542)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (542)
.+| +..+++|+.++++.+. ++.+++++|.+.+ +| +..+++|+.|++++|...
T Consensus 247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l----------- 299 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL----------- 299 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC-----------
T ss_pred CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCccc-----------
Confidence 876 5678899999988764 4567788886544 32 467889999999998642
Q ss_pred HHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccC
Q 009136 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402 (542)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~ 402 (542)
..+......+..+ .+..+++|++|++++|.++.++ +..+
T Consensus 300 -------------------------------------~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~--l~~l 338 (457)
T 3bz5_A 300 -------------------------------------YLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD--VSHN 338 (457)
T ss_dssp -------------------------------------CEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC--CTTC
T ss_pred -------------------------------------ceeccCCCcceEe--chhhcccCCEEECCCCcccccc--cccC
Confidence 1112222223333 1344578899999999888875 7888
Q ss_pred ccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCC
Q 009136 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471 (542)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 471 (542)
++|+.|++++|+++++ +.|..|.+.+|.+... ..+..|+.+++++|++++..|..+
T Consensus 339 ~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 9999999999988763 4566667777776543 245667888889888876555443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=265.21 Aligned_cols=306 Identities=20% Similarity=0.338 Sum_probs=197.7
Q ss_pred cCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEc
Q 009136 65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 144 (542)
Q Consensus 65 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 144 (542)
..+++|++|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 345677777777777766643 6666777777777776666655 666667777777766666553 4556666666666
Q ss_pred cCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCC
Q 009136 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224 (542)
Q Consensus 145 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 224 (542)
++|.+..++. +..+++|++|++++|.... .+..+..+++|+.|++++|.+..++.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLS------------------------DLSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCC------------------------CCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcc------------------------cccchhhCCCCcEEEecCCCcCCchh
Confidence 6666555543 5555555555555553222 12224444555555555554443322
Q ss_pred CCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEE
Q 009136 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304 (542)
Q Consensus 225 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~ 304 (542)
+..+++|+.+++++|.+..++. +..+++|+.+++++|.+...+......+|+.+++++|.++.++. +..+++|+.|+
T Consensus 173 -~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 249 (347)
T 4fmz_A 173 -IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLE 249 (347)
T ss_dssp -GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred -hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEE
Confidence 4455555555555555555544 55556666666666655554443333446666666666666555 66677777777
Q ss_pred cCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccE
Q 009136 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384 (542)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~ 384 (542)
+++|.+.. + ..+..+++|++
T Consensus 250 l~~n~l~~-----------------------------------------------------------~-~~~~~l~~L~~ 269 (347)
T 4fmz_A 250 IGTNQISD-----------------------------------------------------------I-NAVKDLTKLKM 269 (347)
T ss_dssp CCSSCCCC-----------------------------------------------------------C-GGGTTCTTCCE
T ss_pred CCCCccCC-----------------------------------------------------------C-hhHhcCCCcCE
Confidence 77765532 2 23445678889
Q ss_pred EECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCC
Q 009136 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (542)
Q Consensus 385 L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 464 (542)
|++++|.++.++ .+..+++|++|++++|.+++.++..+..+++|++|++++|+++.+.+ +..+++|++|++++|.++
T Consensus 270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999988888875 47888999999999999998888888999999999999999887765 778899999999998774
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.4e-32 Score=263.72 Aligned_cols=304 Identities=23% Similarity=0.346 Sum_probs=235.4
Q ss_pred eecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcC
Q 009136 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (542)
Q Consensus 43 ~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 122 (542)
++++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 3788999999999998886 48889999999999999998876 899999999999999998875 58999999999999
Q ss_pred CCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (542)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (542)
+|.+..++. +..+++|++|++++|........+..+++|++|++++|.+..+.. +..+++|++|++++|.+..++.
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 194 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP- 194 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-
Confidence 999998866 889999999999999655555568889999999999998887665 7778888888888888777665
Q ss_pred cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEc
Q 009136 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (542)
Q Consensus 203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l 282 (542)
+..+++|+.+++.+|.+..++. +..+++|+.|++++|.+..++. +..+++|++|++++|.++
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~---------------- 256 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS---------------- 256 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----------------
T ss_pred ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC----------------
Confidence 6667777777777777665543 6666777777777777666654 566666666666665544
Q ss_pred cCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEE
Q 009136 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (542)
Q Consensus 283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (542)
.+ ..+..+++|+.+++++|.+..+
T Consensus 257 ------~~-~~~~~l~~L~~L~l~~n~l~~~------------------------------------------------- 280 (347)
T 4fmz_A 257 ------DI-NAVKDLTKLKMLNVGSNQISDI------------------------------------------------- 280 (347)
T ss_dssp ------CC-GGGTTCTTCCEEECCSSCCCCC-------------------------------------------------
T ss_pred ------CC-hhHhcCCCcCEEEccCCccCCC-------------------------------------------------
Confidence 33 2356667777777777765322
Q ss_pred EecCCCCCCCCccccccCCccEEECCCCcccccC-hhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (542)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~ 440 (542)
..+..+++|++|++++|.++..+ ..+..+++|++|++++|.+++.++ +..+++|++|++++|+++
T Consensus 281 -----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 -----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 12344677888888888877644 467888899999999998888766 678899999999988875
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=262.91 Aligned_cols=237 Identities=21% Similarity=0.305 Sum_probs=147.1
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (542)
+.+++++.+++++|..+. +++++|++++|.+..+ +..|..+++|++|++++|.+..+ |.+|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP---------------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CEEEeCCCCcCcCCCCCC---------------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence 467778888888877653 3578888888877766 35677788888888888777766 557777
Q ss_pred CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCC-cccccCCCccEEE
Q 009136 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD 166 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~ 166 (542)
+++|++|++++|.++.+|.. |.++++|++|++++|.+..+ +..+..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 77888888877777776543 67777777777777777644 345666777777777777666443 3466666777777
Q ss_pred ccCCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCcc
Q 009136 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSA 244 (542)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~ 244 (542)
+++|.+..+....+..+++|+.|++++|.+..++. .+..+++|+.|++++|... .++.......+|+.|++++|.+..
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 77776666666656666666666666666554432 4455555555555554322 233322233344444444444444
Q ss_pred cch-hccCCCCccEEEcCCC
Q 009136 245 LPA-ELGKLSKLGTLDLHSN 263 (542)
Q Consensus 245 ~~~-~~~~~~~L~~L~l~~~ 263 (542)
+|. .+..+++|+.|++++|
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHhcCccccCeeECCCC
Confidence 331 2333444444444433
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=7.2e-31 Score=257.32 Aligned_cols=129 Identities=20% Similarity=0.357 Sum_probs=57.0
Q ss_pred cCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCC-ccccccCCccEEEc
Q 009136 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC 121 (542)
Q Consensus 45 ~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l 121 (542)
++++.|+++++.+..+|. .+..+++|++|++++|.+..++. ++..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 445555555555444443 23444555555555554444432 4444455555555544444332 22444444444444
Q ss_pred CCCcCCcCCcc-ccCCCCCCeEEccCCccccCCc-ccccCCCccEEEccCCccc
Q 009136 122 SSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLT 173 (542)
Q Consensus 122 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~ 173 (542)
++|.+..+|.. +..+++|++|++++|.+..++. .+..+++|++|++++|.++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 44444444432 2344444444444444443321 2333444444444444333
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=1.9e-30 Score=261.48 Aligned_cols=315 Identities=20% Similarity=0.259 Sum_probs=183.9
Q ss_pred ccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCc
Q 009136 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (542)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (542)
-+.+++++++++.+|..+. +++++|++++|.+..++ ..|..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3567777777887776553 57888888888887663 45777888888888888887777777777788888888887
Q ss_pred ccCcccc-ccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchh
Q 009136 195 LLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 271 (542)
Q Consensus 195 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~ 271 (542)
.++.+|. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 7777664 356777777777777777644 44567777777777777777644 34566666677666666655544332
Q ss_pred hhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhh
Q 009136 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (542)
Q Consensus 272 ~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (542)
.+..+++|+.|++++|.+..+....+..
T Consensus 171 ---------------------~l~~l~~L~~L~l~~n~i~~~~~~~~~~------------------------------- 198 (477)
T 2id5_A 171 ---------------------ALSHLHGLIVLRLRHLNINAIRDYSFKR------------------------------- 198 (477)
T ss_dssp ---------------------HHTTCTTCCEEEEESCCCCEECTTCSCS-------------------------------
T ss_pred ---------------------HhcccCCCcEEeCCCCcCcEeChhhccc-------------------------------
Confidence 2444555555555555443322111000
Q ss_pred hhcccccccEEEecCCCC-CCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136 352 ATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (542)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L 429 (542)
..++++++++++.. ..++.......+|++|++++|.++.+|. .+..+++|++|++++|.+++++...|..+++|
T Consensus 199 ----l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 199 ----LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp ----CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred ----CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence 01122222222111 1122222223355555555555555553 34555555555555555555555555555555
Q ss_pred cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcc
Q 009136 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL 509 (542)
Q Consensus 430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l 509 (542)
++|++++|++..+....|..+++|++|++++|.++.+.+.. +..+++|+.|++++|++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV----------------------FHSVGNLETLILDSNPL 332 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG----------------------BSCGGGCCEEECCSSCE
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH----------------------cCCCcccCEEEccCCCc
Confidence 55555555555554444555555555555555554332222 34456777788888776
Q ss_pred c
Q 009136 510 Q 510 (542)
Q Consensus 510 ~ 510 (542)
.
T Consensus 333 ~ 333 (477)
T 2id5_A 333 A 333 (477)
T ss_dssp E
T ss_pred c
Confidence 6
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=7.1e-31 Score=257.40 Aligned_cols=306 Identities=22% Similarity=0.271 Sum_probs=214.3
Q ss_pred CCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEE
Q 009136 135 RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRL 212 (542)
Q Consensus 135 ~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 212 (542)
.+.++++++++++.+..+|.. +..+++|++|++++|.+..+....+..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 346778888888877777665 567778888888888777777766777777888888777776654 446777777777
Q ss_pred EccCCCCccCCCC-CcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC
Q 009136 213 DLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290 (542)
Q Consensus 213 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l 290 (542)
++++|.+..++.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------- 181 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------------------- 181 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------------------
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------------------
Confidence 7777777766654 46777777777777777755 334667777777777777666542
Q ss_pred ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC
Q 009136 291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (542)
Q Consensus 291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (542)
+..+++|+.+++++|.+..+. .+..+++++++++.+.
T Consensus 182 ---~~~l~~L~~L~l~~n~l~~~~----------------------------------------~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 182 ---LSLIPSLFHANVSYNLLSTLA----------------------------------------IPIAVEELDASHNSIN 218 (390)
T ss_dssp ---GGGCTTCSEEECCSSCCSEEE----------------------------------------CCSSCSEEECCSSCCC
T ss_pred ---cccccccceeecccccccccC----------------------------------------CCCcceEEECCCCeee
Confidence 223344444444444432211 0123344444444444
Q ss_pred CCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCC
Q 009136 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (542)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~ 450 (542)
.++... .++|++|++++|.++..+ ++..+++|++|++++|.++++.+..+..+++|++|++++|++..++.. +..+
T Consensus 219 ~~~~~~--~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l 294 (390)
T 3o6n_A 219 VVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPI 294 (390)
T ss_dssp EEECCC--CSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCC
T ss_pred eccccc--cccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCC
Confidence 333222 467888888888887764 577888888888888888887777788888888888888888876544 5677
Q ss_pred CCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCC
Q 009136 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530 (542)
Q Consensus 451 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~ 530 (542)
++|++|++++|.+.. +|..+..+++|+.|++++|.++.++ +..+++|+.|++++|
T Consensus 295 ~~L~~L~L~~n~l~~-----------------------~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 295 PTLKVLDLSHNHLLH-----------------------VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp TTCCEEECCSSCCCC-----------------------CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCCEEECCCCccee-----------------------cCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 888888888887653 3344556688999999999888774 678889999999998
Q ss_pred cCC
Q 009136 531 NIS 533 (542)
Q Consensus 531 ~l~ 533 (542)
+++
T Consensus 350 ~~~ 352 (390)
T 3o6n_A 350 DWD 352 (390)
T ss_dssp CEE
T ss_pred Ccc
Confidence 875
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.2e-29 Score=261.95 Aligned_cols=303 Identities=20% Similarity=0.261 Sum_probs=152.6
Q ss_pred CCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEc
Q 009136 68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA 144 (542)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 144 (542)
.+++.++++++.+..+|. .+..+++|++|++++|.++.++ ..|..+++|++|++++|.+..++. .+.++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 344444444444444433 2344444444444444444332 234444444444444444443332 2344444444444
Q ss_pred cCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCC
Q 009136 145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (542)
Q Consensus 145 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 223 (542)
++|.+..++.. |..+++|++|++++|.+..+.+..+..+++|++|++++|.+..++ +..+++|+.+++++|.+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence 44444444333 244444444444444444444444444444444444444444332 22344445555554444322
Q ss_pred CCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC-ChhhcCcCCCcE
Q 009136 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRK 302 (542)
Q Consensus 224 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~ 302 (542)
...++|+.|++++|.+..++..+ .++|+.|++++|.++..+.......|+.|++++|.+.++ |..+..+++|+.
T Consensus 208 ---~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 ---AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ---ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ---cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 22334555555555544443322 134555555555444433222233344444444444443 344556666666
Q ss_pred EEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCc
Q 009136 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI 382 (542)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L 382 (542)
|++++|.+.. +|..+..+++|
T Consensus 283 L~Ls~N~l~~-----------------------------------------------------------l~~~~~~l~~L 303 (597)
T 3oja_B 283 LYISNNRLVA-----------------------------------------------------------LNLYGQPIPTL 303 (597)
T ss_dssp EECTTSCCCE-----------------------------------------------------------EECSSSCCTTC
T ss_pred EECCCCCCCC-----------------------------------------------------------CCcccccCCCC
Confidence 6666665433 22333345677
Q ss_pred cEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (542)
Q Consensus 383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~ 440 (542)
++|++++|.++.+|..+..+++|+.|++++|.+++++ +..+++|+.|++++|++.
T Consensus 304 ~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred cEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 7888888777777777777788888888888777765 456777888888887765
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.2e-29 Score=262.13 Aligned_cols=305 Identities=22% Similarity=0.271 Sum_probs=208.8
Q ss_pred CCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEE
Q 009136 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD 213 (542)
Q Consensus 136 ~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 213 (542)
+.+++.++++++.+..+|.. +..+++|++|++++|.+..+.+..+..+++|++|++++|.+..++. .+..+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45677777777777766654 5667777777777777777766667777777777777777766553 456677777777
Q ss_pred ccCCCCccCCCC-CcCCCCCcEEEcCCCcCcccc-hhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCC
Q 009136 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (542)
Q Consensus 214 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~ 291 (542)
+++|.+..+|.. +..+++|+.|++++|.+..++ ..+..+++|++|++++|.++.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence 777777766554 466777777777777766553 34666677777777776665543
Q ss_pred hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCC
Q 009136 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (542)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (542)
+..+++|+.+++++|.+..++ .+..++.++++++.+..
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l~----------------------------------------~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTLA----------------------------------------IPIAVEELDASHNSINV 225 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEEE----------------------------------------CCTTCSEEECCSSCCCE
T ss_pred --hhhhhhhhhhhcccCcccccc----------------------------------------CCchhheeeccCCcccc
Confidence 223344444444444432211 01233444444444443
Q ss_pred CCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCC
Q 009136 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (542)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 451 (542)
++..+ .++|+.|++++|.++.. .++..+++|++|++++|.++++++..|..+++|++|+|++|.+..++.. +..++
T Consensus 226 ~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~ 301 (597)
T 3oja_B 226 VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIP 301 (597)
T ss_dssp EECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-SSCCT
T ss_pred ccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-cccCC
Confidence 33322 35788888888888775 4577888888888888888888777788888888888888888877544 56678
Q ss_pred CCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCc
Q 009136 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNN 531 (542)
Q Consensus 452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~ 531 (542)
+|+.|++++|.+.. +|..+..+++|+.|++++|.++.++ +..+++|+.|++++|+
T Consensus 302 ~L~~L~Ls~N~l~~-----------------------i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 302 TLKVLDLSHNHLLH-----------------------VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCCEEECCSSCCCC-----------------------CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCcEEECCCCCCCc-----------------------cCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 88888888887653 3445566788999999999888774 6788899999999988
Q ss_pred CC
Q 009136 532 IS 533 (542)
Q Consensus 532 l~ 533 (542)
++
T Consensus 357 ~~ 358 (597)
T 3oja_B 357 WD 358 (597)
T ss_dssp EE
T ss_pred CC
Confidence 75
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.3e-31 Score=264.23 Aligned_cols=248 Identities=18% Similarity=0.221 Sum_probs=181.2
Q ss_pred HhhceeeccCCcccccchh-hhhccccCCCCCceeeecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCc
Q 009136 9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE 82 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~ 82 (542)
.+++.||++++++++.+.. ++.. +++|++|++++|.+. .++..+..+++|++|++++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 3578899999988765432 2443 778999999999887 567788889999999999998874
Q ss_pred c-hH-hhhCCC----CCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCCcC-----Ccc-ccCCCCCCeEEcc
Q 009136 83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-----PSS-LGRCLNLSDFKAS 145 (542)
Q Consensus 83 l-~~-~~~~l~----~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~-~~~~~~L~~L~l~ 145 (542)
. +. ....++ +|++|++++|.++ .++..+..+++|++|++++|.+... ... ....++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 3 22 334455 6999999999887 3567788899999999999987632 112 2235679999999
Q ss_pred CCcccc-----CCcccccCCCccEEEccCCcccccchhhhh-----ccccCcEEEcCCcccCc-----cccccCCCCccc
Q 009136 146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI 210 (542)
Q Consensus 146 ~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~ 210 (542)
+|.+.. ++..+..+++|++|++++|.+.......+. ..++|++|++++|.++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 988774 345567788999999999888765444333 25588888888888765 456667778888
Q ss_pred EEEccCCCCccC------CCCCcCCCCCcEEEcCCCcCcc-----cchhccCCCCccEEEcCCCcCccc
Q 009136 211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEY 268 (542)
Q Consensus 211 ~L~l~~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~~ 268 (542)
.|++++|.+... +..+..+++|+.|++++|.++. ++..+..+++|++|++++|.++..
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 888888876632 1223357788888888887774 566677778888888888877643
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.4e-29 Score=237.73 Aligned_cols=284 Identities=23% Similarity=0.333 Sum_probs=183.5
Q ss_pred CccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCC
Q 009136 115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (542)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (542)
+++.++++++.+..+|..+. +++++|++++|.+..++ ..+..+++|++|++++|.+..+.+..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 34555555555555544332 45555555555555443 2455566666666666666655555566666666666666
Q ss_pred cccCccccccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCcc---cchhccCCCCccEEEcCCCcCcccc
Q 009136 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA---LPAELGKLSKLGTLDLHSNQLKEYC 269 (542)
Q Consensus 194 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~i~~~~ 269 (542)
|.++.+|..+. ++|+.|++++|.+..++. .+..+++|+.|++++|.+.. .+..+..+ +|++|++++|.++.++
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 66666655443 566666666666665543 35666677777777666652 23444444 6677777776666655
Q ss_pred hhhhcccccEEEccCCCCCCCC-hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhh
Q 009136 270 VEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348 (542)
Q Consensus 270 ~~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (542)
.... ..|+.+++++|.++.++ ..+..+++|+.|++++|.+..+.
T Consensus 189 ~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~---------------------------------- 233 (332)
T 2ft3_A 189 KDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE---------------------------------- 233 (332)
T ss_dssp SSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC----------------------------------
T ss_pred cccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC----------------------------------
Confidence 4332 45666677777666654 34666777777777776553321
Q ss_pred hhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCC--
Q 009136 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL-- 426 (542)
Q Consensus 349 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l-- 426 (542)
+..+..+++|++|++++|.++.+|.++..+++|++|++++|.+++++...|...
T Consensus 234 ------------------------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 234 ------------------------NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp ------------------------TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred ------------------------hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 124556788999999999888888888889999999999999988887766653
Q ss_pred ----CCCcEEEccCCCCc--ccCCCccCCCCCCceEecCCCc
Q 009136 427 ----SSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNI 462 (542)
Q Consensus 427 ----~~L~~L~L~~n~i~--~~~~~~~~~~~~L~~L~l~~n~ 462 (542)
++|+.|++.+|++. .+.+.+|..+++|+.+++++|+
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 67889999999887 5666678888999999988774
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-28 Score=235.12 Aligned_cols=280 Identities=21% Similarity=0.295 Sum_probs=219.9
Q ss_pred hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhh
Q 009136 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI 87 (542)
Q Consensus 10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~ 87 (542)
+++.++++++.++++|..+. +++++|++++|.++.++. .|..+++|++|++++|.+..+ |..+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 56788888888888887653 468889999888887764 688888999999998888877 6688
Q ss_pred hCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccc---cCCcccccCCCcc
Q 009136 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS 163 (542)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~ 163 (542)
..+++|++|++++|.++.+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.+. ..+..+..+++|+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 888899999998888888876654 788899998888887654 5778888999999888876 3445678888899
Q ss_pred EEEccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccCC-CCCcCCCCCcEEEcCCCc
Q 009136 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA 241 (542)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~ 241 (542)
+|++++|.+..++...+ ++|++|++++|.++.+ +..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.
T Consensus 175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 99998888887765432 7888889988888766 467888888999999888888654 367888889999999998
Q ss_pred CcccchhccCCCCccEEEcCCCcCcccchhhhc--------ccccEEEccCCCCCC---CChhhcCcCCCcEEEcCCCc
Q 009136 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP 309 (542)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~l~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~ 309 (542)
+..+|..+..+++|++|++++|.++.++...+. ..++.+++++|.+.. .+..+..+.+++.+++++|+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888888899999988888877655442 337788888887764 34557778888888887763
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.2e-28 Score=232.83 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=167.5
Q ss_pred CCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC
Q 009136 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (542)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 170 (542)
+++.++++++.++.+|..+. +.++.|++++|+++.++. .+.++++|++|++++|.+.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------------------- 89 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-------------------- 89 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC--------------------
Confidence 45555555555555554332 345555555555554433 3444455555555554444
Q ss_pred cccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCc---ccc
Q 009136 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALP 246 (542)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~---~~~ 246 (542)
.+.+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.+..++. .+..+++|+.+++++|.+. ..+
T Consensus 90 ---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 90 ---KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp ---CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred ---eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 4433334444444444444444444443322 445555555555544332 3445555555555555554 223
Q ss_pred hhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC-ChhhcCcCCCcEEEcCCCccccccccccCCCcHHH
Q 009136 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325 (542)
Q Consensus 247 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 325 (542)
..+..+++|++|++++|.++.++.... .+|+.+++++|.++++ +..+..+++|+.|++++|.+..+.
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------- 232 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD----------- 232 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-----------
T ss_pred hhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-----------
Confidence 445555666666666665555443332 3466666666666654 345677777777777777654332
Q ss_pred HHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccC
Q 009136 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405 (542)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L 405 (542)
+..+..+++|++|++++|.++.+|.++..+++|
T Consensus 233 -----------------------------------------------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 233 -----------------------------------------------NGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp -----------------------------------------------TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred -----------------------------------------------hhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 123445678888888888888888888888888
Q ss_pred cEEEccCCcCCCCChhhhhC------CCCCcEEEccCCCCcc--cCCCccCCCCCCceEecCCCc
Q 009136 406 QTLILSRNKIKDWPDAILTS------LSSLSCLKLDNNPLRQ--VPSDGFKDIPMLQILDLSYNI 462 (542)
Q Consensus 406 ~~L~l~~~~l~~~~~~~l~~------l~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~ 462 (542)
++|++++|.+++++...|.. .+.|+.|++.+|++.. +.+..|..+++++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 88888888888887776654 3778888888888764 555667778888888888774
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-28 Score=235.09 Aligned_cols=279 Identities=27% Similarity=0.367 Sum_probs=211.3
Q ss_pred hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhh
Q 009136 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI 87 (542)
Q Consensus 10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~ 87 (542)
+++.++++++.++++|..++ +++++|++++|.+..++ .+|..+++|++|++++|.+..+ |.++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---------------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCCC---------------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 46778888888888887663 46888888888888664 5788888888888888888876 6678
Q ss_pred hCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc---CCcccccCCCcc
Q 009136 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS---LPEDLADCSKMS 163 (542)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~ 163 (542)
..+++|++|++++|.++.+|..+. ++|++|++++|++..++. .+..+++|++|++++|.+.. .+..+..+ +|+
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 888888888888888887776655 788888888888887764 47778888888888887752 34445555 888
Q ss_pred EEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCc
Q 009136 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA 241 (542)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~ 241 (542)
+|++++|.++.++.... ++|++|++++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus 176 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 88888888877665422 67888888888887765 567788888888888888876654 67788888888888888
Q ss_pred CcccchhccCCCCccEEEcCCCcCcccchhhhc--------ccccEEEccCCCCC--C-CChhhcCcCCCcEEEcCCCc
Q 009136 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS--G-LPPEIGKMTTLRKLLLTGNP 309 (542)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~l~l~~~~l~--~-l~~~l~~~~~L~~L~l~~~~ 309 (542)
+..+|..+..+++|++|++++|.++.++...+. ..++.+++++|.+. . .+..+..+++|+.+++++|+
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888888888888888888876654432 23788888888776 2 34457778888888887763
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-30 Score=262.46 Aligned_cols=372 Identities=19% Similarity=0.197 Sum_probs=220.4
Q ss_pred CCCcEEecCCCccccC--CccccccCCccEEEcCCCcCC-----cCCccccCCCCCCeEEccCCccccCCcccccCCCcc
Q 009136 91 HMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163 (542)
Q Consensus 91 ~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 163 (542)
++|++|+++++.++.. ...+..+++|++|++++|.+. .++..+..+++|++|++++|.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-------------- 68 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-------------- 68 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC--------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC--------------
Confidence 3455666665555422 122445555566665555554 2233444445555555555444
Q ss_pred EEEccCCcccccchhhh-hccc----cCcEEEcCCcccC-----ccccccCCCCcccEEEccCCCCccC-----CCC-Cc
Q 009136 164 KLDVEGNKLTVLSNNLI-ASWT----MLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRILSI-----PSS-IS 227 (542)
Q Consensus 164 ~L~l~~~~~~~~~~~~~-~~~~----~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~-~~ 227 (542)
.......+ ..++ +|++|++++|.++ .++..+..+++|+.|++++|.+... ... ..
T Consensus 69 ---------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 69 ---------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp ---------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred ---------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 33222111 1122 3555555555443 2344555556666666666655411 111 12
Q ss_pred CCCCCcEEEcCCCcCcc-----cchhccCCCCccEEEcCCCcCcccchhhh-------cccccEEEccCCCCCC-----C
Q 009136 228 GCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----L 290 (542)
Q Consensus 228 ~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-------~~~L~~l~l~~~~l~~-----l 290 (542)
..++|++|++++|.+.. ++..+..+++|++|++++|.++....... ...|+.+++++|.++. +
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 24467777777776663 34455667777788887777665333222 2257888888887776 4
Q ss_pred ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC
Q 009136 291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (542)
Q Consensus 291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (542)
+..+..+++|++|++++|.+...... ..........+.++++++++|.++
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~------------------------------~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMA------------------------------ELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHH------------------------------HHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhCCCccEEeccCCcCChHHHH------------------------------HHHHHHhcCCCCceEEECcCCCCC
Confidence 55677788899999988876432100 001111112456788888888776
Q ss_pred C-----CCccccccCCccEEECCCCccccc-----Chhc-ccCccCcEEEccCCcCCCCC----hhhhhCCCCCcEEEcc
Q 009136 371 A-----IPSEIWEAGEITKLDLSRNSIQEL-----PPEL-SSCASLQTLILSRNKIKDWP----DAILTSLSSLSCLKLD 435 (542)
Q Consensus 371 ~-----~~~~~~~~~~L~~L~l~~~~l~~l-----~~~~-~~~~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~L~ 435 (542)
. ++..+..+++|++|++++|.++.. ...+ ...++|++|++++|.+++.. ...+..+++|++|+++
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 5 566666678888888888887642 2222 23368888888888888754 3345667888888888
Q ss_pred CCCCcccCCCccC-----CCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136 436 NNPLRQVPSDGFK-----DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 436 ~n~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 510 (542)
+|++.+.....+. ..++|++|++++|.++.. ....++..+..+++|++|++++|+++
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~------------------~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS------------------SCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------------------HHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChh------------------hHHHHHHHHHhCCCccEEECCCCCCC
Confidence 8887764333222 267888888888876521 12245667778899999999999876
Q ss_pred cc-----Ccccc-CCCCCCEEECCCCcCC
Q 009136 511 SI-----PEGFK-NLTSLTELDLSDNNIS 533 (542)
Q Consensus 511 ~l-----~~~l~-~~~~L~~L~l~~~~l~ 533 (542)
.. .+.+. ....|+.|.+.++.+.
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHHHHHHhccCCcchhheeecccccC
Confidence 32 22232 2457888888887765
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=7.3e-26 Score=231.28 Aligned_cols=260 Identities=30% Similarity=0.365 Sum_probs=231.0
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhh
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~ 88 (542)
.+++.|++++++++++|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence 358999999999999998774 479999999999998886 57899999999999998876
Q ss_pred CCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 168 (542)
.+++|++|++++|.++.+|. .+++|++|++++|+++.+|.. +++|++|++++|.+..++. .+++|+.|+++
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY 169 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence 78999999999999999887 678999999999999998864 4899999999999998875 35789999999
Q ss_pred CCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchh
Q 009136 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (542)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 248 (542)
+|.++.++ ..+++|+.|++++|.++.+|.. +++|+.|++.+|.+..++.. +++|+.|++++|.+..+|
T Consensus 170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence 99999877 4578999999999999988854 47899999999999988753 588999999999999988
Q ss_pred ccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccc
Q 009136 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (542)
Q Consensus 249 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~ 313 (542)
..+++|+.|++++|.++.++. ...+|+.|++++|.++.+|..+..+++|+.|++++|.+...
T Consensus 238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 456899999999999998877 55679999999999999999999999999999999998643
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.7e-25 Score=228.67 Aligned_cols=267 Identities=28% Similarity=0.332 Sum_probs=140.6
Q ss_pred CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCc
Q 009136 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 125 (542)
++++|+++++.+..+|..+. ++|+.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 45556666655555554443 455555555555555543 34555555555555555544 34555555555555
Q ss_pred CCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCC
Q 009136 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (542)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 205 (542)
++.+|. .+++|++|++++|.+..++.. +++|++|++++|.++.+|. .
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---------------------------l~~L~~L~Ls~N~l~~l~~---~ 159 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---------------------------PPGLQELSVSDNQLASLPA---L 159 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSCCCCC---------------------------CTTCCEEECCSSCCSCCCC---C
T ss_pred CCCCCC---CCCCcCEEECCCCCCCcCCCC---------------------------CCCCCEEECcCCcCCCcCC---c
Confidence 554443 334444444444444444332 2344444444444444432 1
Q ss_pred CCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCC
Q 009136 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (542)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~ 285 (542)
+++|+.|++.+|.+..+| ..+++|+.|++++|.+..+|.. .++|+.|++++|.++.++.. ..+|+.|++++|
T Consensus 160 ~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N 231 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 231 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS
T ss_pred cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCC
Confidence 244555555555555444 2345555555555555544432 24555555555555443321 133555555555
Q ss_pred CCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEec
Q 009136 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (542)
Q Consensus 286 ~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (542)
.++.+| ..+++|+.|++++|.+
T Consensus 232 ~L~~lp---~~l~~L~~L~Ls~N~L------------------------------------------------------- 253 (622)
T 3g06_A 232 RLTSLP---VLPSELKELMVSGNRL------------------------------------------------------- 253 (622)
T ss_dssp CCSCCC---CCCTTCCEEECCSSCC-------------------------------------------------------
T ss_pred ccCcCC---CCCCcCcEEECCCCCC-------------------------------------------------------
Confidence 555544 2334555555555544
Q ss_pred CCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCC
Q 009136 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426 (542)
Q Consensus 366 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l 426 (542)
+.+|. .+++|++|++++|.++.+|..+..+++|+.|++++|.+++..+..+..+
T Consensus 254 ----~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 254 ----TSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ----SCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ----CcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 33333 2457777777777777777777777778888888877776655554443
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=8.4e-28 Score=249.36 Aligned_cols=132 Identities=9% Similarity=0.029 Sum_probs=58.8
Q ss_pred CCCCCCeEEccCCccccC-----CcccccCCCccEEEccCCcccccch----hhhhccccCcEEEcCCcccCccccccCC
Q 009136 135 RCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLLNGMPETIGS 205 (542)
Q Consensus 135 ~~~~L~~L~l~~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 205 (542)
.+++|++|++++|.+... +.....+++|++|+++++.+..+.. ..+..+++|++|++++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 444555555555543321 1122344555555555554442211 1233445555555555555444444444
Q ss_pred CCcccEEEccCCCCc----cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCc
Q 009136 206 LSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 206 ~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 266 (542)
+++|+.+++...... .....+..+++|+.+.++++....+|..+..+++|++|++++|.++
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCC
Confidence 555555555432111 1223344445555555554444444444444555555555555433
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.2e-26 Score=217.66 Aligned_cols=241 Identities=26% Similarity=0.339 Sum_probs=210.8
Q ss_pred cCCcEEEcCCCccc---chhHhhcCCCCCcEEEcCC-CCCC-cchHhhhCCCCCcEEecCCCccc-cCCccccccCCccE
Q 009136 45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (542)
Q Consensus 45 ~~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~ 118 (542)
.++++|+++++.+. .+|..+..+++|++|++++ +.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999988 5889999999999999995 7776 67889999999999999999998 78888999999999
Q ss_pred EEcCCCcCC-cCCccccCCCCCCeEEccCCccc-cCCcccccCC-CccEEEccCCcccccchhhhhccccCcEEEcCCcc
Q 009136 119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (542)
Q Consensus 119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (542)
|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+....+..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999988 78888999999999999999998 7888888888 999999999999866666688777 9999999999
Q ss_pred cC-ccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCc-ccchhh
Q 009136 196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA 272 (542)
Q Consensus 196 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~ 272 (542)
++ ..|..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 86 4667788999999999999998866666888999999999999998 77888999999999999999988 445443
Q ss_pred hcccccEEEccCCC
Q 009136 273 CQLRLSVLDLSNNS 286 (542)
Q Consensus 273 ~~~~L~~l~l~~~~ 286 (542)
...+|+.+++++|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 34458888998886
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.9e-25 Score=211.14 Aligned_cols=241 Identities=23% Similarity=0.265 Sum_probs=175.2
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc---hHhh
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI 87 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l---~~~~ 87 (542)
+.+++++++++++|..++ +++++|++++|.+..+|. .|..+++|++|++++|.+..+ +..+
T Consensus 10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 568888888888888663 468999999998888875 478889999999999888755 5677
Q ss_pred hCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc--cccCCCCCCeEEccCCccccC-CcccccCCCccE
Q 009136 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSK 164 (542)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~ 164 (542)
..+++|++|++++|.+..+|..+..+++|++|++++|++..++. .+..+++|++|++++|.+... +..+..+++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 78888999999988888888888888888888888888876653 677778888888888877643 344667777777
Q ss_pred EEccCCcccc-cchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCc
Q 009136 165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA 241 (542)
Q Consensus 165 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~ 241 (542)
|++++|.+.. ..+..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 7777777764 3344466677777777777777655 4556666777777777776665543 45666677777777776
Q ss_pred Cccc-chhccCCC-CccEEEcCCCcCcc
Q 009136 242 LSAL-PAELGKLS-KLGTLDLHSNQLKE 267 (542)
Q Consensus 242 ~~~~-~~~~~~~~-~L~~L~l~~~~i~~ 267 (542)
+... +..+..++ +|++|++++|.+..
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6643 44455553 66666666666543
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.8e-26 Score=214.71 Aligned_cols=240 Identities=22% Similarity=0.322 Sum_probs=203.2
Q ss_pred CCCcEEEcCCCCCC---cchHhhhCCCCCcEEecCC-Cccc-cCCccccccCCccEEEcCCCcCC-cCCccccCCCCCCe
Q 009136 68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD 141 (542)
Q Consensus 68 ~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~ 141 (542)
.+++.|+++++.+. .+|..+..+++|++|++++ |.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999988 4788999999999999995 7776 67888999999999999999988 78888999999999
Q ss_pred EEccCCccc-cCCcccccCCCccEEEccCCcccccchhhhhccc-cCcEEEcCCcccC-ccccccCCCCcccEEEccCCC
Q 009136 142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR 218 (542)
Q Consensus 142 L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 218 (542)
|++++|.+. .++..+..+++|++|++++|.+....+..+..++ +|++|++++|.+. .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999988 6788899999999999999999855555577777 8999999999987 6777787776 9999999998
Q ss_pred Cc-cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCc-ccchhhhc-ccccEEEccCCCCCC-CChhh
Q 009136 219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ-LRLSVLDLSNNSLSG-LPPEI 294 (542)
Q Consensus 219 ~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~-~~L~~l~l~~~~l~~-l~~~l 294 (542)
+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .++..... ..|+.+++++|.+++ +|. .
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C
Confidence 88 4566788899999999999999866666888899999999999988 44444433 349999999998885 555 4
Q ss_pred cCcCCCcEEEcCCCc
Q 009136 295 GKMTTLRKLLLTGNP 309 (542)
Q Consensus 295 ~~~~~L~~L~l~~~~ 309 (542)
..+++|+.+++++|+
T Consensus 288 ~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccccccChHHhcCCC
Confidence 788899999999987
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=217.26 Aligned_cols=265 Identities=20% Similarity=0.264 Sum_probs=147.8
Q ss_pred eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhhhCC
Q 009136 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGEL 90 (542)
Q Consensus 13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~l 90 (542)
..+++++.++++|..++ ++|++|++++|.+..++. .+..+++|++|++++|.+..+ +.++..+
T Consensus 35 ~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp EEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred EeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 45666666666665543 246666666666665543 566666666666666666655 3356666
Q ss_pred CCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCCc--cccCCCCCCeEEccCC-ccccC-CcccccCCCccEE
Q 009136 91 HMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSKMSKL 165 (542)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~l-~~~~~~~~~L~~L 165 (542)
++|++|++++|.++.++.. +..+++|++|++++|++..++. .+..+++|++|++++| .+..+ +..+..+++|++|
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 6666666666666655544 5566666666666666665554 4555666666666665 24433 2345555666666
Q ss_pred EccCCcccccchhhhhccccCcEEEcCCcccCcccccc-CCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCc
Q 009136 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~ 243 (542)
++++|.+..+.+..+..+++|++|++++|.++.++..+ ..+++|+.|++++|.+..++. .+.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------- 243 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------------- 243 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc----------------
Confidence 66666655554445555555666666655555544322 234555555555555543321 000
Q ss_pred ccchhccCCCCccEEEcCCCcCcc-----cchhhhc-ccccEEEccCCCCCCCChh-hcCcCCCcEEEcCCCcccc
Q 009136 244 ALPAELGKLSKLGTLDLHSNQLKE-----YCVEACQ-LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRT 312 (542)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~-~~L~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~ 312 (542)
.....+.++.++++++.+.. ++..... .+|+.+++++|.++.+|.. +..+++|+++++++|++..
T Consensus 244 ----~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 244 ----TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp -------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 01123344444444444432 1211111 2366666666666667666 4778888899998887653
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.7e-25 Score=212.70 Aligned_cols=223 Identities=21% Similarity=0.273 Sum_probs=184.8
Q ss_pred cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCC
Q 009136 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (542)
Q Consensus 45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 124 (542)
+++++|+++++.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 57888888888888888777788888888888888888888888888888888888888888888888888888888886
Q ss_pred cC-CcCCcccc---------CCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCc
Q 009136 125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (542)
Q Consensus 125 ~~-~~~~~~~~---------~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (542)
++ ..+|..+. .+++|++|++++|.+..+|..+..+++|++|++++|.+..+... +..+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence 54 35665554 38889999999998888888888889999999999988877664 888889999999987
Q ss_pred cc-CccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCccc
Q 009136 195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY 268 (542)
Q Consensus 195 ~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~ 268 (542)
.+ +.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++++.+++..+.+...
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 65 567788889999999999997655 67888899999999999998766 7899999999999999988765543
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.4e-25 Score=211.65 Aligned_cols=222 Identities=22% Similarity=0.303 Sum_probs=169.3
Q ss_pred CCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEcc
Q 009136 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (542)
Q Consensus 66 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 145 (542)
..++++.|+++++.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35778888888888888887777788888888888888888888888888888888888888888888888888888888
Q ss_pred CCcc-ccCCcccc---------cCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEcc
Q 009136 146 NNCI-TSLPEDLA---------DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215 (542)
Q Consensus 146 ~~~~-~~l~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 215 (542)
+|.+ ..+|..+. .+++|++|++++|.++.++.. +..+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 8644 35555544 378888888888888766554 778888888888888888888778888888888888
Q ss_pred CCCCc-cCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCc-ccchhhhccc-ccEEEccCCCCC
Q 009136 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLS 288 (542)
Q Consensus 216 ~~~~~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~-L~~l~l~~~~l~ 288 (542)
+|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|....... ++.+++..+.+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 87655 56677788888888888887655 66777888888888888887544 4555444433 777777655433
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=213.79 Aligned_cols=172 Identities=23% Similarity=0.311 Sum_probs=89.3
Q ss_pred EecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCccc
Q 009136 96 LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLT 173 (542)
Q Consensus 96 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~ 173 (542)
.+.+++.++.+|..+. ++|++|++++|++..++. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 3444444444443322 244444444444443332 3444444444444444444332 23455555555555555555
Q ss_pred ccchhhhhccccCcEEEcCCcccCcccc--ccCCCCcccEEEccCC-CCccC-CCCCcCCCCCcEEEcCCCcCccc-chh
Q 009136 174 VLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQN-RILSI-PSSISGCCSLAEFYMGNNALSAL-PAE 248 (542)
Q Consensus 174 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~ 248 (542)
.+....+..+++|++|++++|.++.+|. .+..+++|+.|++++| .+..+ +..+..+++|++|++++|.+..+ |..
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 5555555555555666665555555554 4555666666666665 24433 33455666666666666666543 455
Q ss_pred ccCCCCccEEEcCCCcCcccc
Q 009136 249 LGKLSKLGTLDLHSNQLKEYC 269 (542)
Q Consensus 249 ~~~~~~L~~L~l~~~~i~~~~ 269 (542)
+..+++|++|++++|.++.++
T Consensus 194 l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp TTTCSEEEEEEEECSCSTTHH
T ss_pred HhccccCCeecCCCCccccch
Confidence 666666666666666554433
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=8.8e-26 Score=234.17 Aligned_cols=428 Identities=14% Similarity=0.071 Sum_probs=292.4
Q ss_pred hHHHHHHHhhceeeccCCcc----cccchhhhhccccCCCCCceeeecCCcEEEcCCCcccc-hhHhhcC-CCC-CcEEE
Q 009136 2 DRILKAARTSGSLNLSNRSL----RDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDLRN-LPL-LTVLN 74 (542)
Q Consensus 2 ~~~~~~~~~l~~l~l~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~l~~-~~~-L~~L~ 74 (542)
.+++++..+++.|+++++.- ..+|..... +....-..-...+++|++|++++|.+.. .+..+.. ++. |++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG-YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCC-BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccc-cchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 35678888999999988532 122211100 0000000000127889999999998762 3344443 444 99999
Q ss_pred cCCCCC-C--cchHhhhCCCCCcEEecCCCccccC-----CccccccCCccEEEcCCCcCC-----cCCccccCCCCCCe
Q 009136 75 VSHNKL-S--ELPAAIGELHMLKSLDVSFNSIMKI-----PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSD 141 (542)
Q Consensus 75 l~~~~~-~--~l~~~~~~l~~L~~L~l~~~~~~~l-----~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~ 141 (542)
+++|.- . .++.....+++|++|++++|.++.. +.....+++|++|+++++.+. .++..+.++++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 999862 2 2344556899999999999987633 234567899999999999886 33445668899999
Q ss_pred EEccCCccccCCcccccCCCccEEEccCCccc---ccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCC
Q 009136 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLT---VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (542)
Q Consensus 142 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 218 (542)
|++++|.+..++..+..+++|++|+++..... ......+..+++|+.+.+.+.....+|..+..+++|++|++++|.
T Consensus 225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 99999999888888899999999999753222 111223667789999999988777888888889999999999998
Q ss_pred Ccc--CCCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCccEEEcCC-----------CcCcccchh---hhcccccEE
Q 009136 219 ILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHS-----------NQLKEYCVE---ACQLRLSVL 280 (542)
Q Consensus 219 ~~~--~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~-----------~~i~~~~~~---~~~~~L~~l 280 (542)
+.. +...+..+++|+.|++++ .+. .++.....+++|++|++++ +.++..... ....+|+.+
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred CCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 652 223467899999999984 333 3344456788999999993 455532221 224569999
Q ss_pred EccCCCCCCC-Chhhc-CcCCCcEEEcCC----CccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhc
Q 009136 281 DLSNNSLSGL-PPEIG-KMTTLRKLLLTG----NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354 (542)
Q Consensus 281 ~l~~~~l~~l-~~~l~-~~~~L~~L~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (542)
+++.+.+++- +..+. .+++|+.|++.+ +.++..+. +........
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~------------------------------~~~~~~~~~ 433 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL------------------------------DNGVRSLLI 433 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC------------------------------HHHHHHHHH
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH------------------------------HHHHHHHHH
Confidence 9988877652 22344 488999999963 33332110 001111223
Q ss_pred ccccccEEEecCCC--CC-CCCcccc-ccCCccEEECCCCcccc--cChhcccCccCcEEEccCCcCCCCC-hhhhhCCC
Q 009136 355 LSVTSKELSLEGMN--LS-AIPSEIW-EAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWP-DAILTSLS 427 (542)
Q Consensus 355 ~~~~l~~l~l~~~~--~~-~~~~~~~-~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~ 427 (542)
..+++++++++.|. ++ .....+. .+++|++|++++|.+++ ++..+.++++|++|++++|.+++.. ......++
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 35678999997643 33 2222333 37899999999999875 5556688999999999999987543 33346799
Q ss_pred CCcEEEccCCCCcccCCCcc-CCCCCCceEecCCC
Q 009136 428 SLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN 461 (542)
Q Consensus 428 ~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~l~~n 461 (542)
+|++|++++|+++......+ ..++.+....+..+
T Consensus 514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999999999887655444 35777777666654
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2e-24 Score=201.87 Aligned_cols=218 Identities=28% Similarity=0.386 Sum_probs=121.0
Q ss_pred eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhCC
Q 009136 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGEL 90 (542)
Q Consensus 13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l 90 (542)
.+++++.+++++|..+ .++|++|+++++.+..++ ..|..+++|++|++++|.+..+ +.++..+
T Consensus 15 ~~~c~~~~l~~ip~~~---------------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI---------------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp EEECCSSCCSSCCTTC---------------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred EEEcCcCCcccCCcCC---------------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 4555555555555543 224555555555555443 3455555555555555555544 3355555
Q ss_pred CCCcEEecCCCc-cccC-CccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136 91 HMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (542)
Q Consensus 91 ~~L~~L~l~~~~-~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 168 (542)
++|++|++++|. +..+ +..+..+++|++|++++|.+..++ +..+..+++|++|+++
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLAALQYLYLQ 137 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC----------------------TTTTTTCTTCCEEECC
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC----------------------HhHhhCCcCCCEEECC
Confidence 555555555554 4444 334455555555555555544332 2234444555555555
Q ss_pred CCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCcccc
Q 009136 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP 246 (542)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~ 246 (542)
+|.+..+....+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..++
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 555554444445555555555555555554443 355566666666666666544 556666777777777777777665
Q ss_pred h-hccCCCCccEEEcCCCcCcc
Q 009136 247 A-ELGKLSKLGTLDLHSNQLKE 267 (542)
Q Consensus 247 ~-~~~~~~~L~~L~l~~~~i~~ 267 (542)
. .+..+++|+.|++++|.+..
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHcccCcccCEEeccCCCccC
Confidence 3 46677777777777776653
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-24 Score=205.26 Aligned_cols=243 Identities=21% Similarity=0.248 Sum_probs=186.5
Q ss_pred CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccC---CccccccCCccEEEcC
Q 009136 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCS 122 (542)
Q Consensus 47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~ 122 (542)
-+.++++++.++.+|..+. ++|++|+++++.++.+|. .+..+++|++|++++|.++.+ +..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3678999999998887654 689999999999998876 478999999999999988754 5667778999999999
Q ss_pred CCcCCcCCccccCCCCCCeEEccCCccccCCc--ccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc--
Q 009136 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-- 198 (542)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 198 (542)
+|.+..++..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.......+..+++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99988888888889999999999998887764 57888889999988888887777777788888888888887764
Q ss_pred cccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCcccch-hccCCCCccEEEcCCCcCcccchhhhccc
Q 009136 199 MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLR 276 (542)
Q Consensus 199 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 276 (542)
+|..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++|.++...
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------- 239 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK------- 239 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-------
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-------
Confidence 667777777788888887777755 4566777777777777777776543 4566667777776666655432
Q ss_pred ccEEEccCCCCCCCChhhcCc-CCCcEEEcCCCcccc
Q 009136 277 LSVLDLSNNSLSGLPPEIGKM-TTLRKLLLTGNPLRT 312 (542)
Q Consensus 277 L~~l~l~~~~l~~l~~~l~~~-~~L~~L~l~~~~~~~ 312 (542)
+..+..+ ++|+.+++++|.+..
T Consensus 240 --------------~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 240 --------------KQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp --------------SSSCCCCCTTCCEEECTTCCEEC
T ss_pred --------------HHHHHhhhccCCEEEccCCCeec
Confidence 2334455 367777777777643
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=5.8e-25 Score=205.47 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=165.1
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCC-CCcc-hH
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PA 85 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~-~~~l-~~ 85 (542)
++++.|+++++.+++++...+.. +++|++|++++|.+..+ +..+..+++|++|++++|. +..+ +.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRA------------CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTT------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCceEEEeeCCcCCccCHHHccc------------CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 47899999999999998876665 78899999999999977 6789999999999999997 8877 66
Q ss_pred hhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCc
Q 009136 86 AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKM 162 (542)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L 162 (542)
.+..+++|++|++++|.++.+ +..+..+++|++|++++|++..++. .+..+++|++|++++|.+..++.. +..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 899999999999999999977 5668899999999999999997764 477888899999998888877654 7778888
Q ss_pred cEEEccCCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEEccCCCCc
Q 009136 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL 220 (542)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 220 (542)
++|++++|.+..+.+..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 888888888877766667777777777777777766553 3566666666666666554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=9.7e-24 Score=209.84 Aligned_cols=238 Identities=24% Similarity=0.361 Sum_probs=136.9
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-HhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~~~~ 89 (542)
+.+++++.+++++|..+. ++++.|++++|.+..++ ..|.++++|++|++++|.+..++ .+|..
T Consensus 46 ~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS---------------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp CEEECCSCCCSSCCSCCC---------------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred CEEEeCCCCcCcCCCCCC---------------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 456666666666666553 24666666666666543 45666666666666666666553 35666
Q ss_pred CCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCC-ccccCCc-ccccCCCccEE
Q 009136 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL 165 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L 165 (542)
+++|++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 6666666666666665544 35666666666666666665443 4555666666666653 3333333 35555666666
Q ss_pred EccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc
Q 009136 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~ 243 (542)
++++|.++.++. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus 191 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 191 NLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 666666655542 55555666666666655544 34555556666666666655543 334555566666666666555
Q ss_pred ccch-hccCCCCccEEEcCCCcCc
Q 009136 244 ALPA-ELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 244 ~~~~-~~~~~~~L~~L~l~~~~i~ 266 (542)
.++. .+..+++|+.|++++|.+.
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhHhccccCCCEEEcCCCCcc
Confidence 5433 2445555666666555543
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-24 Score=205.67 Aligned_cols=236 Identities=22% Similarity=0.283 Sum_probs=178.1
Q ss_pred hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchHhhhC
Q 009136 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (542)
Q Consensus 11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (542)
++..+++.+.+.+.+..++.. +++|++|++++|.+..++ ..+..+++|++|++++|.+..++. +..
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 78 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES 78 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred eeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence 455667777777666666665 667888888888888654 678888888888888888876644 788
Q ss_pred CCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCc-ccccCCCccEEEcc
Q 009136 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVE 168 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~ 168 (542)
+++|++|++++|.++.++. .++|++|++++|++..++.. .+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 79 l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 8888888888888776542 37888888888888766432 35778888888888876643 56777888888888
Q ss_pred CCcccccchhhh-hccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccch
Q 009136 169 GNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (542)
Q Consensus 169 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 247 (542)
+|.+..+....+ ..+++|++|++++|.++.++.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 888877665544 4677888888888888776543 34777888888888887777777777888888888888887777
Q ss_pred hccCCCCccEEEcCCCcCc
Q 009136 248 ELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 248 ~~~~~~~L~~L~l~~~~i~ 266 (542)
.+..+++|+.|++++|.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCCCCTTCCEEECTTCCCB
T ss_pred HhhcCCCCCEEEccCCCcc
Confidence 7777778888888877766
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.2e-23 Score=210.07 Aligned_cols=238 Identities=24% Similarity=0.343 Sum_probs=143.3
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcch-HhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~ 89 (542)
+.+++++.+++++|..+. +++++|++++|.+..+ ++.|.++++|+.|++++|.+..++ ..|..
T Consensus 57 ~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp CEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 456666666666665542 3466666666666654 355666666666666666666553 45666
Q ss_pred CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCC-ccccCCc-ccccCCCccEE
Q 009136 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL 165 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L 165 (542)
+++|++|++++|.++.++.. +..+++|++|++++|.+..++. .+.++++|++|+++++ .+..++. .+..+++|++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 66666666666666655443 5666666666666666665543 4556666666666663 3444433 35556666666
Q ss_pred EccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc
Q 009136 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~ 243 (542)
++++|.+..++. +..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus 202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 666666665532 55566666666666666554 44556666666666666666543 344556666666666666666
Q ss_pred ccch-hccCCCCccEEEcCCCcCc
Q 009136 244 ALPA-ELGKLSKLGTLDLHSNQLK 266 (542)
Q Consensus 244 ~~~~-~~~~~~~L~~L~l~~~~i~ 266 (542)
.++. .+..+++|+.|++++|.+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccChHHhccccCCCEEEccCCCcC
Confidence 5543 3455566666666666544
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=3.1e-25 Score=209.87 Aligned_cols=245 Identities=16% Similarity=0.151 Sum_probs=144.0
Q ss_pred ceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCC--cchHhhh-------CCCCCcEEecCCCccc-cCCcc
Q 009136 40 KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG-------ELHMLKSLDVSFNSIM-KIPDE 109 (542)
Q Consensus 40 ~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~-~l~~~ 109 (542)
.++..++|++|++++|.+ .+|..+... |+.|+++++.+. .++..+. .+++|++|++++|.++ .+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 344456666666666666 555544433 666666666554 2333333 5666666666666665 45554
Q ss_pred c--cccCCccEEEcCCCcCCcCCccccCC-----CCCCeEEccCCccccCC-cccccCCCccEEEccCCccccc----ch
Q 009136 110 I--GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVL----SN 177 (542)
Q Consensus 110 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~----~~ 177 (542)
+ ..+++|++|++++|++..+|..+..+ ++|++|++++|.+..++ ..+..+++|++|++++|++... ..
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 4 56666666666666666555545444 66666666666666554 4566666666666666664321 11
Q ss_pred hhhhccccCcEEEcCCcccCccc----cccCCCCcccEEEccCCCCccCC--CCCcCCCCCcEEEcCCCcCcccchhccC
Q 009136 178 NLIASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSALPAELGK 251 (542)
Q Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 251 (542)
..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.++.+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 11256666666666666665332 12345566667777766666533 334456667777777776666666554
Q ss_pred CCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCC
Q 009136 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289 (542)
Q Consensus 252 ~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~ 289 (542)
++|++|++++|+++.++......+|+.+++++|.+++
T Consensus 274 -~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 6677777777766666543333446777777776554
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.6e-23 Score=205.74 Aligned_cols=122 Identities=24% Similarity=0.326 Sum_probs=63.4
Q ss_pred ccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCc
Q 009136 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (542)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (542)
...+++++..+..+|..+. ++++.|++++|.+..++ ..|..+++|++|++++|.+..+....|.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4556666666666665443 45666666666665443 34555666666666666665555555555555555555555
Q ss_pred ccCcccc-ccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCC
Q 009136 195 LLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGN 239 (542)
Q Consensus 195 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~ 239 (542)
.++.++. .+..+++|+.|++++|.+..++. .+..+++|+.|++++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 5544442 34444444444444444443322 333334444444433
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.1e-26 Score=239.01 Aligned_cols=384 Identities=14% Similarity=0.133 Sum_probs=234.0
Q ss_pred ecCCcEEEcCCCccc-c---------------hhHhhcCCCCCcEEEcCCCCCCcc-hHhhh-CCCCCcEEecCCC-ccc
Q 009136 44 AVDLQKLILAHNNIE-K---------------LKEDLRNLPLLTVLNVSHNKLSEL-PAAIG-ELHMLKSLDVSFN-SIM 104 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~-~---------------l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~-~l~~L~~L~l~~~-~~~ 104 (542)
+++|++|+++++... . ++.....+++|++|++++|.+... +..+. .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 566777777776421 1 122345677788888887776632 33443 5778888888777 444
Q ss_pred c--CCccccccCCccEEEcCCCcCCc-----CCccccCCCCCCeEEccCCc--cc--cCCcccccCCCccEEEccCC-cc
Q 009136 105 K--IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNC--IT--SLPEDLADCSKMSKLDVEGN-KL 172 (542)
Q Consensus 105 ~--l~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~--~l~~~~~~~~~L~~L~l~~~-~~ 172 (542)
. ++..+.++++|++|++++|.+.. ++.....+++|++|+++++. +. .+......+++|++|++++| .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 2 44445567788888887777553 22233466778888887775 21 12222345678888888777 33
Q ss_pred cccchhhhhccccCcEEEcCCc-------ccCccccccCCCCcccEE-EccCCCCccCCCCCcCCCCCcEEEcCCCcCcc
Q 009136 173 TVLSNNLIASWTMLTELIASKN-------LLNGMPETIGSLSRLIRL-DLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244 (542)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 244 (542)
.. ....+..+++|++|.+..+ .+..++..+.++++|+.+ .+.+.....++..+..+++|+.|++++|.+..
T Consensus 225 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 225 EK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 33 2334667777888875444 333455566777777777 44443333444445567788888888887652
Q ss_pred --cchhccCCCCccEEEcCCCcCccc--chhh-hcccccEEEccC---------CCCCC--CChhhcCcCCCcEEEcCCC
Q 009136 245 --LPAELGKLSKLGTLDLHSNQLKEY--CVEA-CQLRLSVLDLSN---------NSLSG--LPPEIGKMTTLRKLLLTGN 308 (542)
Q Consensus 245 --~~~~~~~~~~L~~L~l~~~~i~~~--~~~~-~~~~L~~l~l~~---------~~l~~--l~~~l~~~~~L~~L~l~~~ 308 (542)
+...+..+++|++|++++| +... .... ...+|++|++++ +.+++ +......+++|+.|.+..+
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 3333567788888888877 3321 1111 134588887743 23322 1111234788888877666
Q ss_pred ccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEec--C----CCCCCCCc------cc
Q 009136 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE--G----MNLSAIPS------EI 376 (542)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~----~~~~~~~~------~~ 376 (542)
.++... ........++++++++. + +.++..|. .+
T Consensus 383 ~l~~~~----------------------------------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 383 QMTNAA----------------------------------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp CCCHHH----------------------------------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred CcCHHH----------------------------------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 553211 11111224567888887 3 34443322 24
Q ss_pred cccCCccEEECCCCcccc-cChhcc-cCccCcEEEccCCcCCCCChhhh-hCCCCCcEEEccCCCCcccCCC-ccCCCCC
Q 009136 377 WEAGEITKLDLSRNSIQE-LPPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSD-GFKDIPM 452 (542)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~-l~~~~~-~~~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~-~~~~~~~ 452 (542)
..+++|++|++++ .+++ ....+. .+++|++|++++|.+++.....+ .++++|++|++++|++++.... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 5578999999977 5443 222333 48899999999999877655555 6689999999999998653322 2345789
Q ss_pred CceEecCCCcCC
Q 009136 453 LQILDLSYNIAS 464 (542)
Q Consensus 453 L~~L~l~~n~~~ 464 (542)
|++|++++|.++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 999999999773
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.6e-25 Score=232.37 Aligned_cols=215 Identities=20% Similarity=0.221 Sum_probs=98.3
Q ss_pred ecCCcEEEcCCCcccc-hhHhhc-CCCCCcEEEcCCC-CCCc--chHhhhCCCCCcEEecCCCcccc-----CCcccccc
Q 009136 44 AVDLQKLILAHNNIEK-LKEDLR-NLPLLTVLNVSHN-KLSE--LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSA 113 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~-l~~~l~-~~~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l 113 (542)
+++|++|++++|.+.. .+..+. .+++|++|++++| .+.. ++..+..+++|++|++++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4456666666555441 222232 4556666666555 3332 33334455566666666555442 11122244
Q ss_pred CCccEEEcCCCc--CC--cCCccccCCCCCCeEEccCC-ccccCCcccccCCCccEEEccCCc-------ccccchhhhh
Q 009136 114 TALVKFDCSSNQ--LK--ELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMSKLDVEGNK-------LTVLSNNLIA 181 (542)
Q Consensus 114 ~~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~ 181 (542)
++|++|++++|. +. .++..+..+++|++|++++| .+..++..+..+++|++|++..+. +..+.. .+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHh
Confidence 556666665554 11 11112233455666666555 333344445555566666543332 112221 245
Q ss_pred ccccCcEE-EcCCcccCccccccCCCCcccEEEccCCCCcc--CCCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCcc
Q 009136 182 SWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLG 256 (542)
Q Consensus 182 ~~~~L~~L-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~ 256 (542)
++++|+.+ .+.+.....++..+..+++|+.|++++|.+.. +...+..+++|+.|++++| +. .++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 55555555 33333333344333345556666665555431 1122345555666666555 22 1122222355566
Q ss_pred EEEc
Q 009136 257 TLDL 260 (542)
Q Consensus 257 ~L~l 260 (542)
+|++
T Consensus 342 ~L~L 345 (594)
T 2p1m_B 342 ELRV 345 (594)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=5.5e-23 Score=205.16 Aligned_cols=224 Identities=22% Similarity=0.313 Sum_probs=122.2
Q ss_pred CCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEc
Q 009136 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYM 237 (542)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l 237 (542)
+++++|++++|.+..+....|..+++|++|++++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34444444444444444444444445555555554444433 344455555555555555554433 3455556666666
Q ss_pred CCCcCcccch-hccCCCCccEEEcCCC-cCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccc
Q 009136 238 GNNALSALPA-ELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315 (542)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 315 (542)
++|.+..++. .+..+++|+.|++++| .+..++. ..+..+++|+.|++++|.+..++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------------------~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE---------------------GAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT---------------------TTTTTCTTCCEEECTTSCCSSCC-
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh---------------------hhccCCCCCCEEECCCCcccccc-
Confidence 6666555433 4555666666666553 2222211 12444555555555555442221
Q ss_pred cccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCccccc
Q 009136 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395 (542)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 395 (542)
.+..+++|++|++++|.++.+
T Consensus 213 -----------------------------------------------------------~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 213 -----------------------------------------------------------NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp -----------------------------------------------------------CCTTCTTCCEEECTTSCCSEE
T ss_pred -----------------------------------------------------------cccccccccEEECcCCcCccc
Confidence 122345666666666666554
Q ss_pred -ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCC
Q 009136 396 -PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (542)
Q Consensus 396 -~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 464 (542)
|..|.++++|++|++++|.++++....|..+++|++|+|++|+++.++...|..+++|+.|++++|.+.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 345666666666777666666666666666667777777766666666666666666777777666553
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-24 Score=205.29 Aligned_cols=253 Identities=18% Similarity=0.187 Sum_probs=192.3
Q ss_pred CCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
.++..+++.+.+...+ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++..+. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 4666677777777554 45667889999999999999774 689999999999999999987655 88999999999999
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ET 202 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 202 (542)
|.++.++ ..++|++|++++|.+..++. ..+++|++|++++|.+..+.+..+..+++|++|++++|.+..++ ..
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred Ccccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 9988665 33899999999999887654 34688999999999999888777888899999999999887653 33
Q ss_pred c-CCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhc-ccccEE
Q 009136 203 I-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVL 280 (542)
Q Consensus 203 ~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~~L~~l 280 (542)
+ ..+++|+.|++++|.+..++.. ..+++|+.|++++|.+..++..+..+++|++|++++|.++.++..... ..|+.+
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence 3 4678888888888888766433 347888888888888887777777788888888888877765544322 236666
Q ss_pred EccCCCCC--CCChhhcCcCCCcEEEcC
Q 009136 281 DLSNNSLS--GLPPEIGKMTTLRKLLLT 306 (542)
Q Consensus 281 ~l~~~~l~--~l~~~l~~~~~L~~L~l~ 306 (542)
++++|.+. .++..+..+++|+.+++.
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECC
Confidence 66666655 244445555555555444
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2e-24 Score=204.31 Aligned_cols=243 Identities=20% Similarity=0.203 Sum_probs=145.6
Q ss_pred cCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccc--cCCcccc-------ccCCccEEEcCCCcCC-cCCccc-
Q 009136 65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL- 133 (542)
Q Consensus 65 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~-~~~~~~- 133 (542)
...++|+.|+++++.+ .+|..+... |++|++++|.+. .++..+. .+++|++|++++|++. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3345566666666666 555544433 666666666654 3444443 5666666666666665 455444
Q ss_pred -cCCCCCCeEEccCCccccCCcccccC-----CCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc---ccccc-
Q 009136 134 -GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI- 203 (542)
Q Consensus 134 -~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~- 203 (542)
..+++|++|++++|.+..++..+..+ ++|++|++++|.+..+....++.+++|++|++++|.+.. ++..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 56666666666666666555545444 666666666666666665556666666666666666432 22222
Q ss_pred -CCCCcccEEEccCCCCccCC----CCCcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCcccchhhhccc
Q 009136 204 -GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQLR 276 (542)
Q Consensus 204 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 276 (542)
..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++.++.... .+
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~ 275 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AK 275 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SE
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CC
Confidence 55666666666666665322 12245566666666666666433 334455666666666666665555444 45
Q ss_pred ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccc
Q 009136 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (542)
Q Consensus 277 L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~ 312 (542)
|+.+++++|.++++|. +..+++|+.+++++|+++.
T Consensus 276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 6666666666666655 6666666666666666543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.6e-22 Score=188.03 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=166.0
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcchH-hhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l~~-~~~~ 89 (542)
..+++++.+++++|..+. ++|++|++++|.+..++. .|..+++|++|++++|.+..++. ++..
T Consensus 10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 367888889999998763 469999999999987764 78899999999999999987754 7889
Q ss_pred CCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc--CCcccccCCCccEE
Q 009136 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L 165 (542)
+++|++|++++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. ++..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 999999999999988664 568889999999999999887764 67888999999999998876 57778888999999
Q ss_pred EccCCcccccchhhhhccccCc----EEEcCCcccCccccccCCCCcccEEEccCCCCccCCCC-CcCCCCCcEEEcCCC
Q 009136 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN 240 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~ 240 (542)
++++|.+..+....+..+.+++ ++++++|.++.++.......+|+.|++++|.++.++.. +..+++|+.+++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9999988887776677666666 66677776666554444444566666666655554432 344555555555555
Q ss_pred cCc
Q 009136 241 ALS 243 (542)
Q Consensus 241 ~~~ 243 (542)
++.
T Consensus 235 ~~~ 237 (276)
T 2z62_A 235 PWD 237 (276)
T ss_dssp CBC
T ss_pred ccc
Confidence 444
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=203.35 Aligned_cols=230 Identities=21% Similarity=0.261 Sum_probs=181.1
Q ss_pred cccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEec
Q 009136 20 SLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98 (542)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 98 (542)
....+|..+...... +++|++|++++|.+..+ |..|..+++|++|++++|.+...+. +..+++|++|++
T Consensus 18 ~~~~l~~~l~~l~~~---------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 87 (487)
T 3oja_A 18 TDSSLKQALASLRQS---------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (487)
T ss_dssp CTTTHHHHHHTTSTT---------GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEEC
T ss_pred chhhhHHHHHHhccc---------CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEe
Confidence 333566666554333 56899999999988866 4688889999999999998886544 888889999999
Q ss_pred CCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccC-CcccccCCCccEEEccCCcccccch
Q 009136 99 SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSN 177 (542)
Q Consensus 99 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~ 177 (542)
++|.++.++. .++|++|++++|.+..++.. .+++|++|++++|.+..+ +..+..+++|++|++++|.+....+
T Consensus 88 s~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 88 NNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp CSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred cCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 9988876653 38899999999888876543 457888999998888865 4467788889999998888887665
Q ss_pred hhhh-ccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCcc
Q 009136 178 NLIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLG 256 (542)
Q Consensus 178 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~ 256 (542)
..+. .+++|++|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred HHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 5554 678888888888888877543 35788888888888888887778888888888888888888888888888888
Q ss_pred EEEcCCCcCc
Q 009136 257 TLDLHSNQLK 266 (542)
Q Consensus 257 ~L~l~~~~i~ 266 (542)
.|++++|.+.
T Consensus 241 ~L~l~~N~l~ 250 (487)
T 3oja_A 241 HFDLRGNGFH 250 (487)
T ss_dssp EEECTTCCBC
T ss_pred EEEcCCCCCc
Confidence 8888888776
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.1e-23 Score=206.34 Aligned_cols=222 Identities=22% Similarity=0.230 Sum_probs=160.5
Q ss_pred chhHhhcCC----CCCcEEEcCCCCCCcch-HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccc
Q 009136 59 KLKEDLRNL----PLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133 (542)
Q Consensus 59 ~l~~~l~~~----~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 133 (542)
.+|..+..+ ++|+.|++++|.+..++ ..|..+++|++|++++|.++..++ +..+++|++|++++|.+..++.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE--
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC--
Confidence 455555444 48999999999988774 588899999999999998886654 8888999999999988876653
Q ss_pred cCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc-cccccC-CCCcccE
Q 009136 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIG-SLSRLIR 211 (542)
Q Consensus 134 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~ 211 (542)
.++|++|++++|.+..++. ..+++|+.|++++|.+..+.+..+..+++|+.|++++|.+.. .|..+. .+++|+.
T Consensus 98 --~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred --CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 2788888888888886654 345788888888888887777667788888888888888765 344443 5777888
Q ss_pred EEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhc-ccccEEEccCCCCC
Q 009136 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLS 288 (542)
Q Consensus 212 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~~L~~l~l~~~~l~ 288 (542)
|++++|.+..++. ...+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++..... ..|+.+++++|.+.
T Consensus 174 L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 174 LNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 8888887776643 3347777777777777777766677777777777777766655443222 22555555555444
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.1e-21 Score=182.74 Aligned_cols=198 Identities=26% Similarity=0.322 Sum_probs=118.6
Q ss_pred ceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccCCccccccCCccE
Q 009136 40 KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVK 118 (542)
Q Consensus 40 ~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 118 (542)
.+.+++++++++++++.++.+|..+. ++++.|++++|.+..+ +..+..+++|++|++++|.++.++.. ..+++|++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 34556777777777777777765553 5777777777777765 34677777777777777777765443 56677777
Q ss_pred EEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccC
Q 009136 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (542)
Q Consensus 119 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (542)
|++++|++..+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|++..+....|..+++|+.|++++|.++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 77777777766666666666666666666666554 23556666666666666666555554555555555555555554
Q ss_pred ccccc-cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136 198 GMPET-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (542)
Q Consensus 198 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 240 (542)
.+|.. +..+++|+.|++++|.+..+|..+...++|+.+++++|
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 44432 23344444444444444444433333333444444333
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.8e-21 Score=181.47 Aligned_cols=197 Identities=28% Similarity=0.341 Sum_probs=180.5
Q ss_pred HHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchHh
Q 009136 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAA 86 (542)
Q Consensus 8 ~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~ 86 (542)
..+++++++++++++++|..++ +++++|++++|.+..+ +..|..+++|++|++++|.++.++..
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC---------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence 4578999999999999998774 4699999999999976 46899999999999999999987654
Q ss_pred hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccE
Q 009136 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSK 164 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~ 164 (542)
..+++|++|++++|.++.+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.+..++.. +..+++|+.
T Consensus 74 -~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp -SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred -CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 7899999999999999999999999999999999999999887 5688999999999999999988765 678999999
Q ss_pred EEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCc
Q 009136 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220 (542)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 220 (542)
|++++|+++.++...+..+++|++|++++|.++.+|..+....+|+.+++.+|.+.
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99999999999998899999999999999999999999888999999999999765
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.3e-21 Score=181.56 Aligned_cols=196 Identities=20% Similarity=0.328 Sum_probs=168.0
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 567999999999888876 68888999999999999888876 888999999999999888875 588889999999999
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 203 (542)
|++..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+.. +..+++|++|++++|.++.++. +
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l 191 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-L 191 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-h
Confidence 99888764 8888999999999998887765 8888999999999998887765 8888999999999999988775 7
Q ss_pred CCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchh
Q 009136 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (542)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 248 (542)
..+++|+.|++++|.+..++ .+..+++|+.+++++|.+...|..
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred cCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCee
Confidence 78899999999999988776 478899999999999988866553
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.3e-21 Score=184.18 Aligned_cols=214 Identities=21% Similarity=0.289 Sum_probs=175.2
Q ss_pred CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcC
Q 009136 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126 (542)
Q Consensus 47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 126 (542)
+..+.+..+.+..+. ....+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 21 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 334445555554321 2345678999999999888876 68888999999999999888877 88899999999999998
Q ss_pred CcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCC
Q 009136 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 206 (542)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 206 (542)
..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..+.. +..+++|++|++++|.++.++. +..+
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l 172 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANL 172 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred CCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCC
Confidence 8875 68888999999999999888764 8888999999999998887765 7888999999999999888776 7888
Q ss_pred CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccch
Q 009136 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270 (542)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 270 (542)
++|+.|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++..+.
T Consensus 173 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 999999999998887754 7888899999999999988774 7888999999999988876443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.6e-21 Score=178.92 Aligned_cols=134 Identities=31% Similarity=0.472 Sum_probs=92.5
Q ss_pred ccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136 378 EAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (542)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 456 (542)
.+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++|.+..++...|..+++|++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 35667777777777666654 35666777777777777777666666677777777777777776666666667777777
Q ss_pred ecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc-cccCCCCCCEEECCCCcCC
Q 009136 457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~ 533 (542)
++++|.++.+.+..| ..+++|+.|++++|.++.+|. .|..+++|+.|++++|++.
T Consensus 163 ~L~~n~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAF----------------------DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSCCCTTTT----------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EecCCcCcEeChhHh----------------------ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 777776665544333 445777888888888777754 3777888888888888765
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.8e-21 Score=177.14 Aligned_cols=196 Identities=23% Similarity=0.360 Sum_probs=122.9
Q ss_pred CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCcc-ccccCCccEEEcCC
Q 009136 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSS 123 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~ 123 (542)
+.+.++++++.++.+|..+. ++++.|+++++.+..++. +|..+++|++|++++|.++.++.. |..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35566666666665554443 456666666666665543 556666666666666666655443 35566666666666
Q ss_pred CcCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccc
Q 009136 124 NQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (542)
Q Consensus 124 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (542)
|++..++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.+..++...+..+++|++|++++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 66665543 345566666666666666655433 5566677777777776666666666667777777777777666553
Q ss_pred -ccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCc
Q 009136 202 -TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 202 -~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~ 243 (542)
.+..+++|+.|++++|.+..++. .+..+++|+.+++++|++.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 35667777777777777776654 4666777778888777655
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=4.4e-21 Score=178.18 Aligned_cols=218 Identities=22% Similarity=0.253 Sum_probs=174.7
Q ss_pred cEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCc
Q 009136 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQ 125 (542)
Q Consensus 48 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 125 (542)
..++..+..+..+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 457777777888887664 589999999999998865 88999999999999999987654 68899999999999999
Q ss_pred CCcCC-ccccCCCCCCeEEccCCccccCCc-ccccCCCccEEEccCCcccccc-hhhhhccccCcEEEcCCcccCccc-c
Q 009136 126 LKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMP-E 201 (542)
Q Consensus 126 ~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~ 201 (542)
+..++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+. +..+..+++|++|++++|.++.++ .
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 98665 568889999999999999887765 5888899999999999888754 556888889999999999887765 3
Q ss_pred ccCCCCccc----EEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchh-ccCCCCccEEEcCCCcCcc
Q 009136 202 TIGSLSRLI----RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKE 267 (542)
Q Consensus 202 ~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~ 267 (542)
.+..+++++ .+++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.|++++|.+..
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 454455555 78888888887766555556788888888888877654 5677888888888877653
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.5e-21 Score=174.67 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=118.0
Q ss_pred CCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCc-cccCCc-cccccCCccEEEcCC-CcCCcCC-ccccCCCCCCeEE
Q 009136 69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK 143 (542)
Q Consensus 69 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~ 143 (542)
+|++|+++++.++.++. +|..+++|++|++++|. ++.++. .|..+++|++|++++ |+++.++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555433 45555555555555554 554433 455555555555555 5555444 2445555666666
Q ss_pred ccCCccccCCcccccCCCcc---EEEccCC-cccccchhhhhccccCc-EEEcCCcccCccccccCCCCcccEEEccCCC
Q 009136 144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (542)
Q Consensus 144 l~~~~~~~l~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 218 (542)
+++|.+..++. +..+++|+ +|++++| .+..++...|..+++|+ +|++++|.++.+|......++|+.|++++|+
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 66665555554 55555555 6777666 66666666667777777 7777777776666543333677777777774
Q ss_pred -CccCC-CCCcCC-CCCcEEEcCCCcCcccchhccCCCCccEEEcCCC
Q 009136 219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (542)
Q Consensus 219 -~~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 263 (542)
+..++ ..+..+ ++|+.+++++|.+..+|.. .+++|+.|+++++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 76654 456667 7788888888877777664 5677788877765
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1e-21 Score=181.81 Aligned_cols=136 Identities=23% Similarity=0.285 Sum_probs=82.8
Q ss_pred cccCCccEEECCCCcccccChh-cccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCce
Q 009136 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (542)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 455 (542)
..+++|++|++++|.++.++.. +..+++|++|++++|.+++++...+..+++|++|++++|+++.+....+..+++|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 4456677777777766665543 566667777777777766666666666677777777777666666655666677777
Q ss_pred EecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCC-c
Q 009136 456 LDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS-A 534 (542)
Q Consensus 456 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~-~ 534 (542)
|++++|.+....+..+.. +++|+.|++++|.+. ..+++|+.++++.|+++ .
T Consensus 186 L~L~~N~l~~~~~~~~~~----------------------l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDR----------------------LTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp EECCSSCCSCCCTTTTTT----------------------CTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGG
T ss_pred EECCCCcCCccCHHHHhC----------------------CcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCc
Confidence 777776666554444444 455566666665543 22445555555555554 3
Q ss_pred CCCCCC
Q 009136 535 LPPELV 540 (542)
Q Consensus 535 lp~~~~ 540 (542)
+|+.+.
T Consensus 238 ip~~~~ 243 (272)
T 3rfs_A 238 VRNSAG 243 (272)
T ss_dssp BBCTTS
T ss_pred ccCccc
Confidence 554443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.3e-20 Score=170.89 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=168.7
Q ss_pred cCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCC-CCcchH-hhhCCCCCcEEecCC-CccccCC-ccccccCCccEE
Q 009136 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKF 119 (542)
Q Consensus 45 ~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L 119 (542)
+++++|++++|.++.++. .|..+++|++|++++|. ++.++. +|..+++|++|++++ |.++.++ ..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998875 78999999999999997 888865 789999999999998 8998776 468899999999
Q ss_pred EcCCCcCCcCCccccCCCCCC---eEEccCC-ccccCCcc-cccCCCcc-EEEccCCcccccchhhhhccccCcEEEcCC
Q 009136 120 DCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPED-LADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (542)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~l~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (542)
++++|.++.+|. +..+++|+ +|++++| .+..++.. +..+++|+ +|++++|.++.++...+.. ++|++|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999999998886 88888888 9999999 89887764 88899999 9999999999888887777 8999999999
Q ss_pred cc-cCccc-cccCCC-CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCc
Q 009136 194 NL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241 (542)
Q Consensus 194 ~~-~~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 241 (542)
|. ++.++ ..+..+ ++|+.|++++|.+..+|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 95 88875 467888 9999999999999988765 68899999988763
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.3e-20 Score=169.50 Aligned_cols=177 Identities=30% Similarity=0.420 Sum_probs=161.0
Q ss_pred ccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEcc
Q 009136 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (542)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~ 435 (542)
...++++++++.+..+|..+. +++++|++++|.++.++. .+..+++|++|++++|.+++++...|..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999998764 799999999999988765 68899999999999999999999989999999999999
Q ss_pred CCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch-hhhcCCCCCEEeCCCCcccccC
Q 009136 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSIP 513 (542)
Q Consensus 436 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~ 513 (542)
+|++..++...|..+++|++|++++|.++.+.+..|..+++|+.|++ .+.+..++. .+..+++|+.|++++|.++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999998888999999999999999999888888999999999999 888888877 5889999999999999999885
Q ss_pred c-cccCCCCCCEEECCCCcCCcC
Q 009136 514 E-GFKNLTSLTELDLSDNNISAL 535 (542)
Q Consensus 514 ~-~l~~~~~L~~L~l~~~~l~~l 535 (542)
. .+..+++|+.|++++|+++-.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 4 689999999999999998754
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=3.3e-20 Score=171.62 Aligned_cols=181 Identities=28% Similarity=0.399 Sum_probs=161.9
Q ss_pred ccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
..++++++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++++...+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 57899999999988775 4777999999999999998875 688999999999999999999998899999999999999
Q ss_pred CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccC-
Q 009136 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIP- 513 (542)
Q Consensus 437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~- 513 (542)
|++..+....|..+++|++|++++|.++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.++.++
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 9999988888899999999999999999888888999999999999 7778777665 588999999999999999885
Q ss_pred ccccCCCCCCEEECCCCcCCcCCCCC
Q 009136 514 EGFKNLTSLTELDLSDNNISALPPEL 539 (542)
Q Consensus 514 ~~l~~~~~L~~L~l~~~~l~~lp~~~ 539 (542)
..+..+++|+.|++++|++..-.+.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HHHhCCcCCCEEEccCCCccccCcHH
Confidence 45899999999999999987544443
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=2.6e-21 Score=188.98 Aligned_cols=226 Identities=17% Similarity=0.189 Sum_probs=177.8
Q ss_pred ecCCcEEEcCCCcccc-----hhHhhcCCCCCcEEEcCCCCCCc----chHh-------hhCCCCCcEEecCCCcccc--
Q 009136 44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK-- 105 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~~~~----l~~~-------~~~l~~L~~L~l~~~~~~~-- 105 (542)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 6789999999998873 44557788999999998876552 2333 4788999999999998875
Q ss_pred ---CCccccccCCccEEEcCCCcCCc-----CCccccCC---------CCCCeEEccCCccc--cCC---cccccCCCcc
Q 009136 106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS 163 (542)
Q Consensus 106 ---l~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~l~---~~~~~~~~L~ 163 (542)
++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 56678888999999999998862 23334444 89999999999886 333 4567888999
Q ss_pred EEEccCCccccc-----chhhhhccccCcEEEcCCccc-----CccccccCCCCcccEEEccCCCCcc-----CCCCC--
Q 009136 164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSI-- 226 (542)
Q Consensus 164 ~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-- 226 (542)
+|++++|.+... ....+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.. ++..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 999999988732 222477889999999999998 4577788889999999999999873 34555
Q ss_pred cCCCCCcEEEcCCCcCcc-----cchhc-cCCCCccEEEcCCCcCcccc
Q 009136 227 SGCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC 269 (542)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~~~i~~~~ 269 (542)
..+++|+.|++++|.+.. +|..+ .++++|++|++++|.++...
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 348999999999999996 77777 66899999999999998655
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3e-21 Score=188.57 Aligned_cols=244 Identities=19% Similarity=0.170 Sum_probs=156.9
Q ss_pred CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCc-----chHhhhCCCCCcEEecCCCcccc----CCccc------
Q 009136 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK----IPDEI------ 110 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~----l~~~~------ 110 (542)
.|+...+....+..++..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.. +|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4444455555566788888999999999999998884 33457789999999999876553 33333
Q ss_pred -cccCCccEEEcCCCcCCc-----CCccccCCCCCCeEEccCCcccc-----CCcccccC---------CCccEEEccCC
Q 009136 111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEGN 170 (542)
Q Consensus 111 -~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~---------~~L~~L~l~~~ 170 (542)
..+++|++|++++|.+.. ++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 577888888888888775 55667778888888888887752 22223333 77788888777
Q ss_pred cccccch----hhhhccccCcEEEcCCcccC------ccccccCCCCcccEEEccCCCCc-----cCCCCCcCCCCCcEE
Q 009136 171 KLTVLSN----NLIASWTMLTELIASKNLLN------GMPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEF 235 (542)
Q Consensus 171 ~~~~~~~----~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l 235 (542)
.+..... ..+..+++|++|++++|.++ -++..+..+++|+.|++++|.++ .++..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 7763222 23556667777777777665 12225556666777777776663 344555666666666
Q ss_pred EcCCCcCcc-----cchhcc--CCCCccEEEcCCCcCcc-----cchhh-h-cccccEEEccCCCCCC
Q 009136 236 YMGNNALSA-----LPAELG--KLSKLGTLDLHSNQLKE-----YCVEA-C-QLRLSVLDLSNNSLSG 289 (542)
Q Consensus 236 ~l~~~~~~~-----~~~~~~--~~~~L~~L~l~~~~i~~-----~~~~~-~-~~~L~~l~l~~~~l~~ 289 (542)
++++|.+.. ++..+. .+++|++|++++|.++. ++... . .++|+.+++++|.++.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 666666653 244442 26666666666666655 33332 1 1335555555555444
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=7.6e-21 Score=183.74 Aligned_cols=244 Identities=20% Similarity=0.223 Sum_probs=178.7
Q ss_pred eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-----HhhcCCC-CCcEEEcCCCCCCcc-hH
Q 009136 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA 85 (542)
Q Consensus 13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-----~~l~~~~-~L~~L~l~~~~~~~l-~~ 85 (542)
.++++.+.++....+.... .++|++|++++|.+...+ +++..++ +|++|++++|.+... +.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 3577888887655555553 456999999999988543 6788888 899999999988854 44
Q ss_pred hhhCC-----CCCcEEecCCCccccCCc-c----cccc-CCccEEEcCCCcCCcCCc-----cccC-CCCCCeEEccCCc
Q 009136 86 AIGEL-----HMLKSLDVSFNSIMKIPD-E----IGSA-TALVKFDCSSNQLKELPS-----SLGR-CLNLSDFKASNNC 148 (542)
Q Consensus 86 ~~~~l-----~~L~~L~l~~~~~~~l~~-~----~~~l-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~ 148 (542)
.+..+ ++|++|++++|.++..+. . +..+ ++|++|++++|.+...+. .+.. .++|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 44443 899999999999885433 2 4445 889999999999885542 2334 4689999999998
Q ss_pred cc-----cCCcccccCC-CccEEEccCCcccccchhhhh----cc-ccCcEEEcCCcccCc-----cccccCC-CCcccE
Q 009136 149 IT-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR 211 (542)
Q Consensus 149 ~~-----~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~ 211 (542)
+. .++..+...+ +|++|++++|.++......+. .. ++|++|++++|.++. ++..+.. .++|+.
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 87 3334455555 899999999998877664443 34 589999999998876 5555555 458999
Q ss_pred EEccCCCCccCC-----CCCcCCCCCcEEEcCCCcCc--------ccchhccCCCCccEEEcCCCcCccc
Q 009136 212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALS--------ALPAELGKLSKLGTLDLHSNQLKEY 268 (542)
Q Consensus 212 L~l~~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~--------~~~~~~~~~~~L~~L~l~~~~i~~~ 268 (542)
|++++|.+...+ ..+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+...
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 999998887542 34567788899999888743 2344566778888888888887654
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=7.1e-21 Score=183.94 Aligned_cols=115 Identities=22% Similarity=0.180 Sum_probs=64.2
Q ss_pred CccEEECCCCcccccCh-----hcccC-ccCcEEEccCCcCCCCChhh----hhC-CCCCcEEEccCCCCcccCC----C
Q 009136 381 EITKLDLSRNSIQELPP-----ELSSC-ASLQTLILSRNKIKDWPDAI----LTS-LSSLSCLKLDNNPLRQVPS----D 445 (542)
Q Consensus 381 ~L~~L~l~~~~l~~l~~-----~~~~~-~~L~~L~l~~~~l~~~~~~~----l~~-l~~L~~L~L~~n~i~~~~~----~ 445 (542)
+|++|++++|.++.... .+..+ ++|++|++++|.+++..... +.. .++|++|++++|++.+.+. .
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 66777777766654332 23344 36777777777666643332 222 3466777776666655433 2
Q ss_pred ccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136 446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 446 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 510 (542)
.+..+++|+.|++++|.+..+... .+..++..+..+++|+.||+++|++.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~---------------~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKE---------------QCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHH---------------HHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHhcCCCccEEEeccCCccccCHH---------------HHHHHHHHhccCCceEEEecCCCcCC
Confidence 234556666666666654433211 11233344556677788888887765
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=2.1e-20 Score=179.21 Aligned_cols=241 Identities=16% Similarity=0.190 Sum_probs=118.5
Q ss_pred CcEEEcCCCcccchhHhhcCC--CCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCcccc--CCccccccCCccEEEcC
Q 009136 47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS 122 (542)
Q Consensus 47 L~~L~l~~~~~~~l~~~l~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~ 122 (542)
++.++++++.+. +..+..+ ++++.|+++++.+...+..+..+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455555555443 2333333 45555555555554443334445555555555555441 44445555555555555
Q ss_pred CCcCC-cCCccccCCCCCCeEEccCC-ccc--cCCcccccCCCccEEEccCC-ccccc-chhhhhccc-cCcEEEcCCcc
Q 009136 123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKNL 195 (542)
Q Consensus 123 ~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~l~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~ 195 (542)
+|.+. ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++.. ....+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 55544 23344445555555555555 344 23333455555555555555 55432 122344555 55666665553
Q ss_pred --c--CccccccCCCCcccEEEccCCC-Cc-cCCCCCcCCCCCcEEEcCCCc-Cc-ccchhccCCCCccEEEcCCCcCcc
Q 009136 196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLKE 267 (542)
Q Consensus 196 --~--~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~l~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~i~~ 267 (542)
+ ..++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++|++|++++| +..
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 2 2344444455566666666665 33 333445555666666666663 22 11123555666666666666 332
Q ss_pred cchhhhcccccEEEccCCCCCCC
Q 009136 268 YCVEACQLRLSVLDLSNNSLSGL 290 (542)
Q Consensus 268 ~~~~~~~~~L~~l~l~~~~l~~l 290 (542)
.........+..+++++|.+++.
T Consensus 286 ~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TCHHHHHHHSTTSEESCCCSCCT
T ss_pred HHHHHHHhhCcceEEecccCccc
Confidence 22222222355555555555553
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=171.35 Aligned_cols=195 Identities=17% Similarity=0.143 Sum_probs=87.2
Q ss_pred CCCcEEEcCCCCCCc-chHhh--hCCCCCcEEecCCCccccC-C----ccccccCCccEEEcCCCcCCcCC-ccccCCCC
Q 009136 68 PLLTVLNVSHNKLSE-LPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGSATALVKFDCSSNQLKELP-SSLGRCLN 138 (542)
Q Consensus 68 ~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~l~~~~~~~l-~----~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~ 138 (542)
++|++|++++|.+.. .|..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+..++ ..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555442 23333 4455555555555554421 1 11223455555555555554333 34444555
Q ss_pred CCeEEccCCcccc---C--CcccccCCCccEEEccCCcccccchh---hhhccccCcEEEcCCcccCcc-ccccCCC---
Q 009136 139 LSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLLNGM-PETIGSL--- 206 (542)
Q Consensus 139 L~~L~l~~~~~~~---l--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~-~~~~~~~--- 206 (542)
|++|++++|.+.. + +..+..+++|++|++++|.++.++.. .+..+++|++|++++|.++.. |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 5555555554331 1 11123445555555555555433221 233445555555555555443 3333332
Q ss_pred CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcC
Q 009136 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265 (542)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i 265 (542)
++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|. +..+++|+.|++++|.+
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 345555555554444444332 444555555554444433 34444444444444443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=173.72 Aligned_cols=198 Identities=18% Similarity=0.126 Sum_probs=166.0
Q ss_pred ecCCcEEEcCCCccc-chhHhh--cCCCCCcEEEcCCCCCCcc----h-HhhhCCCCCcEEecCCCccccCC-ccccccC
Q 009136 44 AVDLQKLILAHNNIE-KLKEDL--RNLPLLTVLNVSHNKLSEL----P-AAIGELHMLKSLDVSFNSIMKIP-DEIGSAT 114 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~-~l~~~l--~~~~~L~~L~l~~~~~~~l----~-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~ 114 (542)
.++|++|++++|.+. ..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 467999999999987 456666 8899999999999998852 2 35568999999999999998765 6788999
Q ss_pred CccEEEcCCCcCCc---CC--ccccCCCCCCeEEccCCccccCCcc----cccCCCccEEEccCCcccccchhhhhcc--
Q 009136 115 ALVKFDCSSNQLKE---LP--SSLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTVLSNNLIASW-- 183 (542)
Q Consensus 115 ~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 183 (542)
+|++|++++|++.. ++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|.+....+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998753 32 3346889999999999999866542 5778999999999999998754445555
Q ss_pred -ccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcc
Q 009136 184 -TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244 (542)
Q Consensus 184 -~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 244 (542)
++|++|++++|.++.+|..+. ++|+.|++++|.++.+|. +..+++|+.|++++|.+++
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 799999999999999998774 899999999999998865 7888999999999998863
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.1e-18 Score=162.62 Aligned_cols=167 Identities=22% Similarity=0.344 Sum_probs=84.1
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 445666666666555553 35555666666666665555544 5555566666666555555432 55555555555555
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 203 (542)
|++..+ ..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+.. +..+++|++|++++|.++.++. +
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l 196 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L 196 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence 555544 2344455555555555555444 334444455555555444444332 4444444444444444443332 3
Q ss_pred CCCCcccEEEccCCC
Q 009136 204 GSLSRLIRLDLHQNR 218 (542)
Q Consensus 204 ~~~~~L~~L~l~~~~ 218 (542)
..+++|+.|++++|.
T Consensus 197 ~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 197 AGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCTTCSEEEEEEEE
T ss_pred ccCCCCCEEECcCCc
Confidence 334444444444433
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=1.8e-18 Score=157.99 Aligned_cols=171 Identities=26% Similarity=0.382 Sum_probs=90.2
Q ss_pred hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchH-hhh
Q 009136 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIG 88 (542)
Q Consensus 11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~-~~~ 88 (542)
.+.++++++.++++|..+. +++++|++++|.+..++ ..|..+++|++|++++|.+..++. .+.
T Consensus 16 ~~~l~~~~~~l~~~p~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP---------------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC---------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CeEEecCCCCccccCCCCC---------------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 4556666666666665442 24666666666665443 345556666666666666554432 455
Q ss_pred CCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCCcc-ccCCCCCCeEEccCCccccCCc-ccccCCCccEE
Q 009136 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L 165 (542)
.+++|++|++++|.++.++. .+..+++|++|++++|+++.++.. +..+++|++|++++|.+..++. .+..+++|++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 55666666666665554432 345555555555555555554432 3445555555555555554443 24445555555
Q ss_pred EccCCcccccchhhhhccccCcEEEcCCccc
Q 009136 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (542)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (542)
++++|.+..+....+..+++|++|++++|.+
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 5555555544444444444444444444443
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.4e-18 Score=175.24 Aligned_cols=185 Identities=31% Similarity=0.438 Sum_probs=144.3
Q ss_pred CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCc
Q 009136 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (542)
Q Consensus 46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 125 (542)
+|++|++++|.+..+|..+ .++|+.|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 7888888888887777655 367888888888888777 456788888888888888777 554 88888888888
Q ss_pred CCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCC
Q 009136 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (542)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 205 (542)
++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.++. +. ++|+.|++++|.++.+|. +..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence 887776 57788888888888887765 56788888888888887666 43 788888888888888887 543
Q ss_pred CCcc-------cEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc-ccchhccC
Q 009136 206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGK 251 (542)
Q Consensus 206 ~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~ 251 (542)
+| +.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 67 9999999999988888888999999999999887 44555443
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.1e-19 Score=174.28 Aligned_cols=246 Identities=15% Similarity=0.184 Sum_probs=183.1
Q ss_pred hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCc--chHhh
Q 009136 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAAI 87 (542)
Q Consensus 10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~--l~~~~ 87 (542)
..+.+|++++.+. |..+ ..+. .++++.|+++++.+...+..+..+++|++|++++|.+.. ++..+
T Consensus 48 ~~~~l~l~~~~~~--~~~~-~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVT-GRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp TSSEEECTTCBCC--HHHH-HHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred hheeeccccccCC--HHHH-Hhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 3688999998776 2332 2210 167999999999888666566788999999999998873 67788
Q ss_pred hCCCCCcEEecCCCccc-cCCccccccCCccEEEcCCC-cCC--cCCccccCCCCCCeEEccCC-cccc--CCcccccCC
Q 009136 88 GELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADCS 160 (542)
Q Consensus 88 ~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~--l~~~~~~~~ 160 (542)
..+++|++|++++|.++ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 89999999999999877 45677888999999999998 576 35666788899999999999 8874 566678888
Q ss_pred -CccEEEccCCc--cc-ccchhhhhccccCcEEEcCCcc-cC-ccccccCCCCcccEEEccCCC-Cc-cCCCCCcCCCCC
Q 009136 161 -KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSL 232 (542)
Q Consensus 161 -~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L 232 (542)
+|++|++++|. ++ ..-...+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++|
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 99999999984 43 2223346788999999999998 43 456677888999999999985 22 111357789999
Q ss_pred cEEEcCCCcCcc-cchhccCCCCccEEEcCCCcCcccchh
Q 009136 233 AEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVE 271 (542)
Q Consensus 233 ~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~ 271 (542)
+.|++++| +.. ....+. ..++.|++++|.++.....
T Consensus 275 ~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 275 KTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred CEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 99999998 442 112221 2355566888888765443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=4e-18 Score=158.93 Aligned_cols=175 Identities=23% Similarity=0.314 Sum_probs=157.5
Q ss_pred HHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch
Q 009136 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (542)
Q Consensus 5 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~ 84 (542)
++.+.+++.|+++++.+++++. +.. +++|++|++++|.+..++. +..+++|++|++++|.+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~--~~~------------l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG--IQY------------LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GGG------------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hhhcCcccEEEccCCCcccChh--Hhc------------CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 4678899999999999998864 232 7899999999999998876 999999999999999999875
Q ss_pred HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccE
Q 009136 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (542)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 164 (542)
. +..+++|++|++++|.++.+ ..+..+++|++|++++|++..+ ..+..+++|++|++++|.+..++. +..+++|+.
T Consensus 107 ~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN 182 (291)
T ss_dssp G-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred h-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCE
Confidence 4 89999999999999999987 4688999999999999999988 678899999999999999998876 899999999
Q ss_pred EEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (542)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (542)
|++++|.++.++. +..+++|+.|++++|.+...|
T Consensus 183 L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 183 LYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp EECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred EECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence 9999999998754 899999999999999987655
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.7e-18 Score=173.29 Aligned_cols=180 Identities=26% Similarity=0.376 Sum_probs=157.9
Q ss_pred CCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCC
Q 009136 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN 147 (542)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 147 (542)
.+|+.|+++++.++.+|..+ .++|++|++++|.++.+| ..+++|++|++++|+++.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 48999999999999888755 378999999999999988 557999999999999999887 655 9999999999
Q ss_pred ccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCc
Q 009136 148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227 (542)
Q Consensus 148 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 227 (542)
.+..+|. .+++|+.|++++|.++.++. .+++|++|++++|.++.+|. +. ++|+.|++++|.++.+|. +.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~ 199 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP 199 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence 9999887 68999999999999988765 57899999999999999988 55 899999999999998887 54
Q ss_pred CCCCC-------cEEEcCCCcCcccchhccCCCCccEEEcCCCcCccc
Q 009136 228 GCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (542)
Q Consensus 228 ~~~~L-------~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 268 (542)
. +| +.|++++|.+..+|..+..+++|+.|++++|.++..
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 4 77 999999999999999888899999999999998753
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=6.9e-19 Score=155.83 Aligned_cols=175 Identities=27% Similarity=0.379 Sum_probs=138.5
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n 437 (542)
-+.++++++.+..+|..+ .+++++|++++|.++.++. .+..+++|++|++++|.+++++...|..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356778888888887655 4689999999998888775 4678899999999999999888888888999999999999
Q ss_pred CCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc
Q 009136 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG 515 (542)
Q Consensus 438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~ 515 (542)
++..+....|..+++|++|++++|.++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 988888777888899999999999888877777788888888777 6666666654 567788888888888654
Q ss_pred ccCCCCCCEEECCCCcCC-cCCCCCCC
Q 009136 516 FKNLTSLTELDLSDNNIS-ALPPELVS 541 (542)
Q Consensus 516 l~~~~~L~~L~l~~~~l~-~lp~~~~~ 541 (542)
..+++|+.|++++|+++ .+|+.+.+
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 34567777777777776 67766654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=3.9e-18 Score=163.76 Aligned_cols=232 Identities=21% Similarity=0.267 Sum_probs=150.6
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCc-chH-hhh
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LPA-AIG 88 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~-l~~-~~~ 88 (542)
+++++++++++++|.+++ +++++|++++|.++.+|. +|.++++|++|++++|.+.+ ++. +|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 567888888888887763 358888888888888874 57888888888888888753 443 677
Q ss_pred CCCCCcE-EecCCCccccC-CccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccC-CccccCCcc-cccC-CCc
Q 009136 89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPED-LADC-SKM 162 (542)
Q Consensus 89 ~l~~L~~-L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~l~~~-~~~~-~~L 162 (542)
+++++++ +.++.|.++.+ |..|..+++|++|++++|++..++. .+....++..+++.+ +.+..++.. +..+ ..+
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 7777665 44555677766 4557778888888888887776653 334455666676654 345555432 3333 356
Q ss_pred cEEEccCCcccccchhhhhccccCcEEEcC-CcccCcccc-ccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136 163 SKLDVEGNKLTVLSNNLIASWTMLTELIAS-KNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (542)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 240 (542)
+.|++++|.++.+...+|.. .+++++++. +|.++.+|. .+..+++|+.|++++|+++.+|.. .+.+|+.|.+.++
T Consensus 157 ~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST 233 (350)
T ss_dssp EEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred hhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence 77777777777766664433 456666665 356666664 456677777777777777666542 2445555555443
Q ss_pred -cCcccchhccCCCCccEEEcCC
Q 009136 241 -ALSALPAELGKLSKLGTLDLHS 262 (542)
Q Consensus 241 -~~~~~~~~~~~~~~L~~L~l~~ 262 (542)
.++.+|. +..+++|+.+++.+
T Consensus 234 ~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 234 YNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCCCCCC-TTTCCSCCEEECSC
T ss_pred CCcCcCCC-chhCcChhhCcCCC
Confidence 3445553 56666666666654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=5.6e-18 Score=162.68 Aligned_cols=234 Identities=20% Similarity=0.243 Sum_probs=175.9
Q ss_pred cEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccc-cCC-ccccccCCccE-EEcCC
Q 009136 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIP-DEIGSATALVK-FDCSS 123 (542)
Q Consensus 48 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~-~l~-~~~~~l~~L~~-L~l~~ 123 (542)
++++.+++.++++|..+. +++++|++++|.++.+|. +|.++++|++|+|++|.+. .++ ..|.+++++++ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 678899999999998773 689999999999999976 7899999999999999875 454 45788988776 55667
Q ss_pred CcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccC-Ccccccchhhhhccc-cCcEEEcCCcccCcc
Q 009136 124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM 199 (542)
Q Consensus 124 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~ 199 (542)
|++..++ ..+..+++|++|++++|.+..++.. +....++..+++.+ +.+..+....|.... .++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 8888774 5678899999999999999877653 55567788888855 577777777676664 577888888888888
Q ss_pred ccccCCCCcccEEEccC-CCCccCCC-CCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccc
Q 009136 200 PETIGSLSRLIRLDLHQ-NRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (542)
Q Consensus 200 ~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L 277 (542)
+.......+|+.+.+.+ |.+..+|. .+..+++|+.|++++|.++.+|.. .+.+|+.|.+.++
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~-------------- 233 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST-------------- 233 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC--------------
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC--------------
Confidence 77666667788888864 66777764 467778888888888888777653 3456666655443
Q ss_pred cEEEccCCCCCCCChhhcCcCCCcEEEcCC
Q 009136 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307 (542)
Q Consensus 278 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~ 307 (542)
+.++.+|. +..+++|+.+++..
T Consensus 234 -------~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 234 -------YNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp -------TTCCCCCC-TTTCCSCCEEECSC
T ss_pred -------CCcCcCCC-chhCcChhhCcCCC
Confidence 12344443 56677777777654
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=4.2e-18 Score=152.81 Aligned_cols=152 Identities=32% Similarity=0.435 Sum_probs=107.2
Q ss_pred cccEEEecCCCCCCCCccccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
..+.+++++..+..+|..+ .++|++|++++|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3456666666666666544 36667777777666665 34566666677777777766666666666666777777776
Q ss_pred CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccC-cc
Q 009136 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EG 515 (542)
Q Consensus 437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~-~~ 515 (542)
|+++.+....|..+++|++|++++|++. .+|..+..+++|+.|++++|.++.++ ..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-----------------------ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-----------------------ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 6666666655666666677666666554 44556677899999999999999886 45
Q ss_pred ccCCCCCCEEECCCCcCCc
Q 009136 516 FKNLTSLTELDLSDNNISA 534 (542)
Q Consensus 516 l~~~~~L~~L~l~~~~l~~ 534 (542)
|..+++|+.|++++|++.-
T Consensus 155 ~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECTTSCBCT
T ss_pred HhCCCCCCEEEeeCCCccC
Confidence 8899999999999998863
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.5e-17 Score=148.17 Aligned_cols=150 Identities=29% Similarity=0.457 Sum_probs=122.8
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n 437 (542)
-+.++++++.++.+|..+. +++++|++++|.++.++. .|..+++|++|++++|.++.+.+..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3678889999998887664 789999999999998876 6888999999999999999998888999999999999999
Q ss_pred CCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc-cc
Q 009136 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GF 516 (542)
Q Consensus 438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~-~l 516 (542)
+++.++...|.++++|++|++++|+++.+.+..|..+ ++|+.|++++|.++.++. .|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL----------------------HNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------------TTCCEEECCSSCCSCCCTTTT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC----------------------CCCCEEECCCCcCCEECHHHH
Confidence 9999988888999999999999999987766666544 566666777776666643 36
Q ss_pred cCCCCCCEEECCCCcC
Q 009136 517 KNLTSLTELDLSDNNI 532 (542)
Q Consensus 517 ~~~~~L~~L~l~~~~l 532 (542)
..+++|+.|++++|++
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 6666777777766665
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=8.7e-18 Score=154.03 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=114.9
Q ss_pred HHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHh
Q 009136 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (542)
Q Consensus 7 ~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~ 86 (542)
.++++..++++++.+++++ .+.. +++|++|++++|.+..++ .+..+++|+.|++++|.+..++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~-------------l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKE-------------LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHH-------------HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHHHhcCCCccccc-chhh-------------cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-
Confidence 3455666777777777766 2222 567777777777777766 66777777777777777777665
Q ss_pred hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEE
Q 009136 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166 (542)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 166 (542)
+..+++|++|++++|.++.++.... ++|++|++++|+++.++ .+..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLD 156 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEE
T ss_pred hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEE
Confidence 7777777777777777776654333 67777777777777654 4666777777777777766664 566666777777
Q ss_pred ccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (542)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (542)
+++|.+..+ ..+..+++|+.|++++|.+...|
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 777666655 33556666666666666654443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.1e-18 Score=159.92 Aligned_cols=170 Identities=22% Similarity=0.279 Sum_probs=139.4
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~ 438 (542)
+..+++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++++. +..+++|++|++++|+
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 445566777777666 5667888999999998888887 57888899999999998888776 7888999999999998
Q ss_pred CcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccCcccc
Q 009136 439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFK 517 (542)
Q Consensus 439 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~ 517 (542)
+.+++.. .. ++|++|++++|+++.+ ..+..+++|+.|++ .+.+..++ .+..+++|+.|++++|.++.+ ..+.
T Consensus 97 l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~ 169 (263)
T 1xeu_A 97 LKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLT 169 (263)
T ss_dssp CSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTST
T ss_pred cCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhc
Confidence 8887653 33 8899999999988765 35788888998888 77777775 688899999999999999988 6689
Q ss_pred CCCCCCEEECCCCcCCcCCCCC
Q 009136 518 NLTSLTELDLSDNNISALPPEL 539 (542)
Q Consensus 518 ~~~~L~~L~l~~~~l~~lp~~~ 539 (542)
.+++|+.|++++|+++..|...
T Consensus 170 ~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp TCCCCCEEEEEEEEEECCCEEC
T ss_pred cCCCCCEEeCCCCcccCCcccc
Confidence 9999999999999998776543
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.9e-17 Score=169.13 Aligned_cols=171 Identities=23% Similarity=0.335 Sum_probs=120.8
Q ss_pred ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
+++|+.|++++|.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..++ .+..+++|++|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 566777777777777665 46777777777777777776654 777777777777777777665 567777777777777
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 203 (542)
|++..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+ +..+++|+.|++++|.+..++ .+
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 7777653 466777777777777777766 456677777777777777766554 666777777777777776664 46
Q ss_pred CCCCcccEEEccCCCCccC
Q 009136 204 GSLSRLIRLDLHQNRILSI 222 (542)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~ 222 (542)
..+++|+.|++++|.+...
T Consensus 194 ~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEEccCCcCcCC
Confidence 6667777777777666543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=146.85 Aligned_cols=151 Identities=26% Similarity=0.388 Sum_probs=123.9
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
-+.++++++.++.+|..+ ...+++|++++|.++.++. .|..+++|++|++++|.+++++...|.++++|++|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 468899999999888765 4567899999999988743 478999999999999999999888899999999999999
Q ss_pred CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccccc-Ccc
Q 009136 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEG 515 (542)
Q Consensus 437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l-~~~ 515 (542)
|++..+....|..+++|++|++++|.++.+.+..|..+ ++|+.|++++|.++.+ |..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL----------------------SSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC----------------------TTCSEEECTTSCCCCBCTTT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC----------------------ccCCEEECCCCcCCEECHHH
Confidence 99998888888999999999999999887766555544 6677777777777766 566
Q ss_pred ccCCCCCCEEECCCCcCC
Q 009136 516 FKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 516 l~~~~~L~~L~l~~~~l~ 533 (542)
|..+++|+.|++++|+++
T Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTCTTCCEEECCSCCEE
T ss_pred hcCCCCCCEEEecCcCCc
Confidence 777777777777777654
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-18 Score=152.55 Aligned_cols=151 Identities=15% Similarity=0.277 Sum_probs=86.4
Q ss_pred cCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEec
Q 009136 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (542)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l 458 (542)
+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|++.......+..+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 344555555555554444 3444555555555555444332 2344555555555555554433333444555555555
Q ss_pred CCCcCCCCCCCCCCCCchhHHHHH-hhc-cccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCc
Q 009136 459 SYNIASLPENPPFSSLPHLQELYL-RMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534 (542)
Q Consensus 459 ~~n~~~~~~~~~~~~~~~L~~L~l-~~~-~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~ 534 (542)
++|.++...+..+..+++|++|++ .+. +..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+|..
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 555544433344444555555555 332 34444 5778899999999999999887 68999999999999999864
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=4e-18 Score=164.36 Aligned_cols=173 Identities=28% Similarity=0.444 Sum_probs=151.4
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccChh-cc-cCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
-+.++++++.+..+|..+ .+.++.|++++|.++.++.. +. .+++|++|++++|.++.++...|..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467899999999998766 45799999999999998764 55 899999999999999999988899999999999999
Q ss_pred CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhh----hcCCCCCEEeCCCCcccc
Q 009136 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDI----LRLQQLRILDLSQNSLQS 511 (542)
Q Consensus 437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~ 511 (542)
|++..+....|..+++|+.|++++|.+..+.+..|..+++|+.|++ .+.+..+|..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9999998888999999999999999999888889999999999999 88888888775 578999999999999998
Q ss_pred cC-ccccCCCC--CCEEECCCCcCC
Q 009136 512 IP-EGFKNLTS--LTELDLSDNNIS 533 (542)
Q Consensus 512 l~-~~l~~~~~--L~~L~l~~~~l~ 533 (542)
+| ..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 86 45778887 488999999864
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=7.3e-17 Score=164.77 Aligned_cols=175 Identities=23% Similarity=0.316 Sum_probs=157.0
Q ss_pred HHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch
Q 009136 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (542)
Q Consensus 5 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~ 84 (542)
+..+++|+.|+++++.+.++|. + .. +++|+.|++++|.+..++. +..+++|+.|++++|.+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~-l-~~------------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG-I-QY------------LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT-G-GG------------CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred hhcCCCCCEEECcCCCCCCChH-H-cc------------CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence 4567889999999999998873 2 22 7899999999999998876 899999999999999999876
Q ss_pred HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccE
Q 009136 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (542)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 164 (542)
.+..+++|++|+|++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+..++. +..+++|+.
T Consensus 104 -~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~ 179 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN 179 (605)
T ss_dssp -TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred -hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCE
Confidence 7899999999999999999874 588999999999999999988 678899999999999999998766 899999999
Q ss_pred EEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (542)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (542)
|++++|.+..++ .+..+++|+.|++++|.+...|
T Consensus 180 L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 180 LYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp EECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred EECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence 999999999874 4899999999999999987655
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=3.6e-17 Score=144.72 Aligned_cols=156 Identities=33% Similarity=0.448 Sum_probs=138.7
Q ss_pred ccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (542)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 461 (542)
-+.++++++.++.+|..+ .++|++|++++|.+++++...+..+++|++|++++|++..+....|..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 367888888999988654 568999999999999999988999999999999999999998888899999999999999
Q ss_pred cCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCCcCCCC
Q 009136 462 IASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538 (542)
Q Consensus 462 ~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~lp~~ 538 (542)
.++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|++..-.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 999888888999999999999 7788887765 68899999999999999988654 89999999999999998755444
Q ss_pred C
Q 009136 539 L 539 (542)
Q Consensus 539 ~ 539 (542)
+
T Consensus 167 l 167 (208)
T 2o6s_A 167 I 167 (208)
T ss_dssp T
T ss_pred H
Confidence 3
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.3e-16 Score=143.13 Aligned_cols=147 Identities=24% Similarity=0.360 Sum_probs=89.1
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchH-hhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~ 89 (542)
+.+++++++++.+|..+. ++|++|++++|.+..+ +..|..+++|++|++++|.+..++. .|..
T Consensus 22 ~~v~c~~~~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP---------------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp TEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEeEccCCCcCccCCCCC---------------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence 456666666666666542 3566666666666654 4456666666666666666665543 4566
Q ss_pred CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCc-ccccCCCccEEEc
Q 009136 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 167 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l 167 (542)
+++|++|++++|.++.++.. +..+++|++|++++|++..+|..+..+++|++|++++|.+..++. .+..+++|+.|++
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 66666666666666655433 456666666666666666666666666666666666666665543 2555566666666
Q ss_pred cCCccc
Q 009136 168 EGNKLT 173 (542)
Q Consensus 168 ~~~~~~ 173 (542)
.+|++.
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 665544
No 113
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=1.1e-15 Score=149.22 Aligned_cols=328 Identities=13% Similarity=0.183 Sum_probs=184.5
Q ss_pred ccchh-HhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcCC-cc
Q 009136 57 IEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SS 132 (542)
Q Consensus 57 ~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~ 132 (542)
++.|. .+|.+|.+|+.+.+.+ .++.+.. +|.+|.+|+.+++..+ ++.+ ...|..+++|+.+.+..+ +..+. .+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 33443 3566666666666653 3455533 5666666666666543 3333 234556666666555432 22222 23
Q ss_pred ccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccE
Q 009136 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIR 211 (542)
Q Consensus 133 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~ 211 (542)
|.++. +..+.........-...|..+.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+ ..++..+..|+.
T Consensus 136 F~~~~-~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCD-FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTCC-CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred eeccc-ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 33332 22222221111111234666777777777543 45566666777777777777655 3333 235666677777
Q ss_pred EEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCC
Q 009136 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (542)
Q Consensus 212 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~ 291 (542)
+.+..+.. .+......+.+|+.+.+.+....--..++..+..++.+.+..+... + -.
T Consensus 213 i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i---------------------~~ 269 (394)
T 4fs7_A 213 MEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I---------------------GG 269 (394)
T ss_dssp CCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E---------------------CS
T ss_pred eecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e---------------------ec
Confidence 66655432 2223344556777777765432222345666777777777654211 1 11
Q ss_pred hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCC
Q 009136 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (542)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (542)
..+..+..++.+......+ +
T Consensus 270 ~~F~~~~~l~~~~~~~~~i---~--------------------------------------------------------- 289 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIV---P--------------------------------------------------------- 289 (394)
T ss_dssp CTTTTCTTCCEEEECSSEE---C---------------------------------------------------------
T ss_pred cccccccccceeccCceee---c---------------------------------------------------------
Confidence 2344555665554433211 0
Q ss_pred CCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCC
Q 009136 372 IPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (542)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~ 450 (542)
...+..+.+|+++.+.++ ++.++. +|.+|.+|+.+++.. .++.++..+|.+|.+|+.+.+..+ +..++..+|.+|
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 012334567777777653 555544 577888888888864 477777788888888888888765 777888888888
Q ss_pred CCCceEecCCCcCCCCCCCCCCCCchhHH
Q 009136 451 PMLQILDLSYNIASLPENPPFSSLPHLQE 479 (542)
Q Consensus 451 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 479 (542)
++|+.+++..+ +... ..+|.+|++|+.
T Consensus 366 ~~L~~i~lp~~-~~~~-~~~F~~c~~L~~ 392 (394)
T 4fs7_A 366 INLKKVELPKR-LEQY-RYDFEDTTKFKW 392 (394)
T ss_dssp TTCCEEEEEGG-GGGG-GGGBCTTCEEEE
T ss_pred CCCCEEEECCC-CEEh-hheecCCCCCcE
Confidence 88888888754 3222 346777777764
No 114
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=4.6e-16 Score=151.91 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=60.9
Q ss_pred cccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (542)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 456 (542)
..+..++.+......+. ..+|..|.+|+.+.+..+ ++.++..+|.+|.+|+.+++.. .++.++..+|.+|.+|+.+
T Consensus 273 ~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEE
T ss_pred ccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEE
Confidence 33555555555443221 124667777777777543 6666666777777777777753 3666776777777777777
Q ss_pred ecCCCcCCCCCCCCCCCCchhHHHHH
Q 009136 457 DLSYNIASLPENPPFSSLPHLQELYL 482 (542)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L~l 482 (542)
++..+ ++.+...+|.+|++|+++.+
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEE
Confidence 77654 55555556665554444433
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=1.8e-16 Score=141.19 Aligned_cols=147 Identities=18% Similarity=0.304 Sum_probs=93.5
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (542)
+.+++++++++++|..+. +++++|++++|.+..++. .|..+++|+.|++++|.+..+ |.+|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~---------------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---------------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---------------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCCCCcCcCCCccC---------------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 456777777777776553 357777777777766553 566677777777777777655 456667
Q ss_pred CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccEEE
Q 009136 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLD 166 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~ 166 (542)
+++|++|++++|.++.+|.. |..+++|++|++++|++..++ ..+..+++|++|++++|.+..++.. +..+++|++|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 77777777777776666544 466667777777776666553 4455666666666666666655433 55556666666
Q ss_pred ccCCccc
Q 009136 167 VEGNKLT 173 (542)
Q Consensus 167 l~~~~~~ 173 (542)
+++|++.
T Consensus 159 L~~N~~~ 165 (220)
T 2v9t_B 159 LAQNPFI 165 (220)
T ss_dssp CCSSCEE
T ss_pred eCCCCcC
Confidence 6665543
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1e-16 Score=154.56 Aligned_cols=170 Identities=25% Similarity=0.284 Sum_probs=115.1
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhc-CCCCCcEEEcCCCCCCcch-Hhhh
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLR-NLPLLTVLNVSHNKLSELP-AAIG 88 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~-~~~~L~~L~l~~~~~~~l~-~~~~ 88 (542)
+.+++++++++.+|..+.. .++.|++++|.+..++. .+. .+++|+.|++++|.+..++ .+|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~---------------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS---------------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT---------------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEEEeCCCCcCccCccCCC---------------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc
Confidence 4677777777777776533 47777777777776653 354 6777777777777777664 3677
Q ss_pred CCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCCccc----ccCCCc
Q 009136 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDL----ADCSKM 162 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~----~~~~~L 162 (542)
.+++|++|+|++|.++.++. .|..+++|++|++++|++..+ +..+..+++|++|++++|.+..++... ..+++|
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 77777777777777776543 467777777777777777755 345667777777777777777666543 456777
Q ss_pred cEEEccCCcccccchhhhhcccc--CcEEEcCCccc
Q 009136 163 SKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLL 196 (542)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~ 196 (542)
+.|++++|.+..++...+..++. ++.|++.+|.+
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 77777777777666655666554 35566666654
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.7e-16 Score=138.90 Aligned_cols=148 Identities=13% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCcccc-CCcccccCCCccEEEcc
Q 009136 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDVE 168 (542)
Q Consensus 90 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~ 168 (542)
+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 344455555555444444 3444555555555555444332 44445555555555555543 33445555556666665
Q ss_pred CCcccccchhhhhccccCcEEEcCCcc-cCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCc
Q 009136 169 GNKLTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241 (542)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 241 (542)
+|.+.......+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 555554444444555555555555554 44443 3444444444444444444332 33344444444444443
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=140.77 Aligned_cols=147 Identities=19% Similarity=0.283 Sum_probs=102.2
Q ss_pred ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh--HhhcCCCCCcEEEcCCCCCCcchH-hhh
Q 009136 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK--EDLRNLPLLTVLNVSHNKLSELPA-AIG 88 (542)
Q Consensus 12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~l~~-~~~ 88 (542)
+.++++++.++++|..+.. .+++|++++|.+..++ ..|..+++|++|++++|.++.++. +|.
T Consensus 14 ~~l~~s~n~l~~iP~~~~~---------------~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ---------------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT---------------TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEeEeCCCCcccCccCCCC---------------CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence 4677777777777776533 4677778777777663 346777777777777777776644 677
Q ss_pred CCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccC-CcccccCCCccEE
Q 009136 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL 165 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L 165 (542)
.+++|++|++++|.++.++. .|..+++|++|++++|++..+ +..+..+++|++|++++|.+..+ +..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 77777777777777776644 367777777777777777755 45566677777777777777655 4456666777777
Q ss_pred EccCCccc
Q 009136 166 DVEGNKLT 173 (542)
Q Consensus 166 ~l~~~~~~ 173 (542)
++++|++.
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 77666654
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.3e-16 Score=151.86 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=82.2
Q ss_pred cCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCc-EEEccCCCCcccCCCccCCCCCCceE
Q 009136 379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL 456 (542)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~~~~~~~L~~L 456 (542)
+++|+++++.+|.++.++. +|.+|++|++|++.+| ++.++..+|.+|++|+ .+.+.+ .+..++..+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6788888888888888776 5788888888888887 8888888888888888 888887 7788888888888888888
Q ss_pred ecCCCcCCCCCCCCCCCCchhHHH
Q 009136 457 DLSYNIASLPENPPFSSLPHLQEL 480 (542)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L 480 (542)
++++|.+..+...+|.+|++|+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 888888888887788877766543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.6e-16 Score=151.17 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=81.9
Q ss_pred ccccEEEecCCCCCCCCcc-ccccCCccEEECCCCcccccCh-hcccCccCc-EEEccCCcCCCCChhhhhCCCCCcEEE
Q 009136 357 VTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPP-ELSSCASLQ-TLILSRNKIKDWPDAILTSLSSLSCLK 433 (542)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~ 433 (542)
.++++++++++.+..++.. +..|++|+++++.++ ++.++. +|.+|++|+ .+++.+ .++.++..+|.+|++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 3444455554444444443 455889999999987 777775 689999999 999998 89999999999999999999
Q ss_pred ccCCCCcccCCCccCCCCCCceEec
Q 009136 434 LDNNPLRQVPSDGFKDIPMLQILDL 458 (542)
Q Consensus 434 L~~n~i~~~~~~~~~~~~~L~~L~l 458 (542)
+.++.+..++..+|.+|++|+.+..
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 9999999999999999999999864
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.7e-18 Score=173.28 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=147.9
Q ss_pred eeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCC-------------CC-cchHhhhCCCCCcEEe-cCCCccccC
Q 009136 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI 106 (542)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-------------~~-~l~~~~~~l~~L~~L~-l~~~~~~~l 106 (542)
+.+++|+.|++++|.++.+|..+..+++|+.|+++++. .. ..|..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34678888888888888888888888888888876653 22 3455777778888887 555544332
Q ss_pred Cc------cccc--cCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchh
Q 009136 107 PD------EIGS--ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178 (542)
Q Consensus 107 ~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 178 (542)
+. .+.. ...|+.|++++|.++.+|. +..+++|++|++++|.+..+|..++.+++|+.|++++|.++.++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--
Confidence 21 1111 1358889999988888876 88888999999999988888888888999999999999888876
Q ss_pred hhhccccCcEEEcCCcccCcc--ccccCCCCcccEEEccCCCCccCCCCC----cCCCCCcEEEc
Q 009136 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI----SGCCSLAEFYM 237 (542)
Q Consensus 179 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~l~l 237 (542)
.+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+...|... ..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 488889999999999998887 788888999999999999888776543 33788888754
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.4e-18 Score=174.65 Aligned_cols=194 Identities=20% Similarity=0.206 Sum_probs=161.2
Q ss_pred hcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCc-------------cc-cCCccccccCCccEEE-cCCCcCCc
Q 009136 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS-------------IM-KIPDEIGSATALVKFD-CSSNQLKE 128 (542)
Q Consensus 64 l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~-~l~~~~~~l~~L~~L~-l~~~~~~~ 128 (542)
+..+++|+.|+++++.+..+|..+..+++|+.|+++++. .. ..|..++.+++|+.|+ ++.+.+..
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 367899999999999999999999999999999997764 12 3456678888899888 55554432
Q ss_pred CCc------cccC--CCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136 129 LPS------SLGR--CLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (542)
Q Consensus 129 ~~~------~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (542)
++. .+.. ...|++|++++|.+..+|. +..+++|+.|++++|.++.++. .++.+++|+.|++++|.++.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc
Confidence 221 1111 1369999999999999986 9999999999999999998765 5999999999999999999998
Q ss_pred cccCCCCcccEEEccCCCCccC--CCCCcCCCCCcEEEcCCCcCcccchh----ccCCCCccEEEc
Q 009136 201 ETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDL 260 (542)
Q Consensus 201 ~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~L~~L~l 260 (542)
.+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..+|.. +..+++|+.|++
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 899999999999999999987 88999999999999999999977653 344789998864
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.9e-14 Score=139.60 Aligned_cols=249 Identities=11% Similarity=0.195 Sum_probs=147.1
Q ss_pred CCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEE
Q 009136 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFY 236 (542)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~ 236 (542)
+..++.+.+.. .++.++..+|.++ +|+.+.+..+ ++.+. .+|.+ .+|+.+.+.+ .+..+ ...|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35555555543 3555555556653 5666666554 33333 23433 3466666654 34333 24566666666666
Q ss_pred cCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccccccc
Q 009136 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 316 (542)
Q Consensus 237 l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 316 (542)
+.++.+..++.......+|+.+.+..+ ++.+. ...|.++.+|+.+.+..+ +..++..
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~---------------------~~aF~~~~~L~~l~l~~~-l~~I~~~ 243 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIG---------------------SQAFLKTSQLKTIEIPEN-VSTIGQE 243 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT-CCEEC---------------------TTTTTTCTTCCCEECCTT-CCEECTT
T ss_pred cCCCcceEechhhEeecccCEEEeCCc-hheeh---------------------hhHhhCCCCCCEEecCCC-ccCcccc
Confidence 666666666554444556666665432 22221 123556666666666553 4444433
Q ss_pred ccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC-CccccccCCccEEECCCCccc--
Q 009136 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQ-- 393 (542)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-- 393 (542)
+|.. ..++.+.+.+ .+..+ ...+..|++|+++.+.++.+.
T Consensus 244 aF~~------------------------------------~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 244 AFRE------------------------------------SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TTTT------------------------------------CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred cccc------------------------------------CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 3322 2345555533 23333 234556777888887766554
Q ss_pred ---ccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCC
Q 009136 394 ---ELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (542)
Q Consensus 394 ---~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 469 (542)
.++. +|.+|++|+.+++. +.++.++..+|.+|++|+.+.|.. .+..+...+|.+| +|+.+++.+|....+...
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 3443 67888888888887 457777777888888888888854 4777777778888 888888888877766666
Q ss_pred CCCCCc
Q 009136 470 PFSSLP 475 (542)
Q Consensus 470 ~~~~~~ 475 (542)
.|.+++
T Consensus 364 ~F~~~~ 369 (401)
T 4fdw_A 364 VWYGFP 369 (401)
T ss_dssp SCCCSC
T ss_pred cccCCC
Confidence 666664
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3.9e-16 Score=132.88 Aligned_cols=138 Identities=22% Similarity=0.182 Sum_probs=114.7
Q ss_pred cCCccEEECCCCccc--ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136 379 AGEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (542)
Q Consensus 379 ~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 456 (542)
++++++|++++|.++ .+|..+..+++|++|++++|.++++ ..+..+++|++|++++|++....+..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 468899999999888 7888788899999999999999887 557889999999999999888545546668999999
Q ss_pred ecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc----cccCCCCCCEEECCCCcC
Q 009136 457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE----GFKNLTSLTELDLSDNNI 532 (542)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~----~l~~~~~L~~L~l~~~~l 532 (542)
++++|.++.+.. +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++
T Consensus 101 ~Ls~N~l~~~~~---------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDIST---------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGG---------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchh---------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999998765321 1345567899999999999998876 789999999999999999
Q ss_pred CcCCCCC
Q 009136 533 SALPPEL 539 (542)
Q Consensus 533 ~~lp~~~ 539 (542)
..+|+.-
T Consensus 160 ~~~~~~~ 166 (168)
T 2ell_A 160 QEAPDSD 166 (168)
T ss_dssp CBCCSSS
T ss_pred hhccccc
Confidence 9998753
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=3.5e-15 Score=144.77 Aligned_cols=261 Identities=11% Similarity=0.155 Sum_probs=181.0
Q ss_pred cCCCCCcEEEcCCCcCcccc-hhccCCCCccEEEcCCCcCcccchhhhcc-cccEEEccCCCCCCCC-hhhcCcCCCcEE
Q 009136 227 SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP-PEIGKMTTLRKL 303 (542)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~-~L~~l~l~~~~l~~l~-~~l~~~~~L~~L 303 (542)
..+..++.+.+.+. ++.++ .+|.+ .+|+.+.+..+ ++.+....+.. +|+.+.+.. .+..+. ..|.+|.+|+.+
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred EecCCccEEEECCc-cCEehHhhccc-CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 34567788888764 44443 34555 48999999776 66665554433 488888876 555554 457889999999
Q ss_pred EcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCc-cccccCCc
Q 009136 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEI 382 (542)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~L 382 (542)
++.++.+..++..+|.. ..++++.+.++ +..++. .+..+++|
T Consensus 186 ~l~~n~l~~I~~~aF~~------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVY------------------------------------AGIEEVLLPVT-LKEIGSQAFLKTSQL 228 (401)
T ss_dssp ECTTSCCSEECTTTTTT------------------------------------CCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred ecCCCcceEechhhEee------------------------------------cccCEEEeCCc-hheehhhHhhCCCCC
Confidence 99988888777655532 35667777643 444443 45567788
Q ss_pred cEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc-----ccCCCccCCCCCCceE
Q 009136 383 TKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPMLQIL 456 (542)
Q Consensus 383 ~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~-----~~~~~~~~~~~~L~~L 456 (542)
+.+++.++ ++.++. +|.+ .+|+.+.+ .+.++.++..+|.+|++|+.+.+.++.+. .+...+|.+|++|+.+
T Consensus 229 ~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 229 KTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp CCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred CEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 88888763 566554 4555 67888888 45677777788888888888888776654 5777778888888888
Q ss_pred ecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchh-hhcCCCCCEEeCCCCcccccC-ccccCCC-CCCEEECCCCcCC
Q 009136 457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP-EGFKNLT-SLTELDLSDNNIS 533 (542)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~-~~l~~~~-~L~~L~l~~~~l~ 533 (542)
++. +.+..+...+|.+|++|+.+.+..++..++.. +.++ +|+.+++.+|.+..++ ..|..++ +++.|.+..+.+.
T Consensus 306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 306 EIP-ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCC-TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EeC-CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 887 44777777788888888888775556666443 5666 8888888888776663 4466664 6777777666544
No 126
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.62 E-value=3.6e-14 Score=138.52 Aligned_cols=130 Identities=14% Similarity=0.254 Sum_probs=85.4
Q ss_pred hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchh
Q 009136 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (542)
Q Consensus 398 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 477 (542)
+|.+|.+|+.+.+... +..++..+|.++++|+.+.+. +.+..++..+|.+|.+|+.+++..+ ++.+...+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 5677777777777543 345666667777777777775 4566777777777778888777643 666666777777777
Q ss_pred HHHHHhhccccCch-hhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcC
Q 009136 478 QELYLRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 532 (542)
Q Consensus 478 ~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l 532 (542)
+++.+...+..+.. .+.+|++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred CEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 77777555666654 46788999999999875432 3577888999998877654
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=6.7e-16 Score=161.80 Aligned_cols=196 Identities=19% Similarity=0.234 Sum_probs=117.0
Q ss_pred HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhh
Q 009136 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (542)
Q Consensus 9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~ 88 (542)
..++.|++.++.+...+..+....... --++..+++..+.+...++.+..+++|+.|+|++|.+..+|..+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls--------~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLS--------QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccC--------cccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 346778888888887776665531110 012333334445555556788999999999999999999988888
Q ss_pred CCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (542)
Q Consensus 89 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 168 (542)
.+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|..++.+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhhcccc-CcEEEcCCcccCccccccCCCCcccEEEccCC
Q 009136 169 GNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217 (542)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 217 (542)
+|.+....+..+..... ...+++++|.+... ....|+.|++..+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP-----LPHERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCc-----CccccceeEeecc
Confidence 99998766655544322 22356777766431 1234556666655
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3e-15 Score=127.35 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCc-CCccccCCCCCCeEEcc
Q 009136 69 LLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKAS 145 (542)
Q Consensus 69 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 145 (542)
+|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|++.. +|..+..+++|++|+++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 3444444444333 3333333334444444444443333 333334444444444444433 22233334444444444
Q ss_pred CCccccCC--cccccCCCccEEEccCCcccccch---hhhhccccCcEEEcCCcccCcc
Q 009136 146 NNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGM 199 (542)
Q Consensus 146 ~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~ 199 (542)
+|.+..++ ..+..+++|++|++++|++..++. ..+..+++|++|++++|....+
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 44443332 233444444444444444443333 2334444444444444444333
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=124.63 Aligned_cols=128 Identities=27% Similarity=0.395 Sum_probs=105.7
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~ 438 (542)
.+.++++++.+..+|..+ .+++++|++++|.++.+|..+..+++|++|++++|.+++++...|.++++|++|+|++|+
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 367888888888888765 468899999999888888888888999999999999998888888889999999999999
Q ss_pred CcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136 439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 439 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 510 (542)
++.+....|.++++|+.|++++|.++.+.+..|. .+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~----------------------~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN----------------------DLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT----------------------TCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh----------------------cCccccEEEeCCCCee
Confidence 8888887888889999999998888765544443 4478888899988765
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.3e-14 Score=126.02 Aligned_cols=128 Identities=23% Similarity=0.313 Sum_probs=100.5
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
-+.++++++.++.+|..+. .++++|++++|.++.++. .+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3678888888888887653 388888888888887765 377888888888888888888777788888888888888
Q ss_pred CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 510 (542)
|+++.+....|.++++|++|++++|+++...+..+ ..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----------------------EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----------------------TTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----------------------hcCCCCCEEEeCCCCcc
Confidence 88888877778888888888888888776544433 34477888888888776
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.5e-14 Score=124.17 Aligned_cols=111 Identities=32% Similarity=0.451 Sum_probs=103.4
Q ss_pred ccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEE
Q 009136 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433 (542)
Q Consensus 355 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 433 (542)
.+..+++++++++.+..+|..+..+++|++|++++|.++.++. .|.++++|++|++++|.++.++...|.++++|++|+
T Consensus 29 ~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 4568999999999999999889999999999999999999875 689999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136 434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (542)
Q Consensus 434 L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 465 (542)
|++|++..++...|..+++|+.|++++|.+..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999999998889999999999999998753
No 132
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=8e-14 Score=136.04 Aligned_cols=130 Identities=15% Similarity=0.243 Sum_probs=79.2
Q ss_pred cccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCc
Q 009136 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (542)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 454 (542)
.+..|..|+.+.+.+....--..+|.+|++|+.+.+. +.++.++..+|.+|.+|+.+.|.. .++.+...+|.+|.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence 4455677777777654332223356777777777775 456667777777777888877764 36667777777778888
Q ss_pred eEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCc
Q 009136 455 ILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS 508 (542)
Q Consensus 455 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~ 508 (542)
++.+..+ ++.+...+|.+|++|+++.+......+ ..+..+.+|+.+.+..+.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-HTCBCCCCC---------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-hhhhccCCCCEEEeCCCC
Confidence 7777543 666666777777777777663222222 345566777777776553
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.2e-15 Score=123.64 Aligned_cols=122 Identities=23% Similarity=0.297 Sum_probs=73.4
Q ss_pred cCCcEEEcCCCccc--chhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCcccc-CCccccccCCccEEEc
Q 009136 45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC 121 (542)
Q Consensus 45 ~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l 121 (542)
+++++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 56777777777666 5666666666677777766666655 556666666666666666665 5555555666666666
Q ss_pred CCCcCCcCC--ccccCCCCCCeEEccCCccccCCc----ccccCCCccEEEc
Q 009136 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDV 167 (542)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~l 167 (542)
++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 666665543 445555555555555555554443 3444555555544
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=6.4e-14 Score=120.20 Aligned_cols=103 Identities=30% Similarity=0.515 Sum_probs=46.4
Q ss_pred cEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC
Q 009136 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (542)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~ 438 (542)
+.+++.++.+..+|..+ .+++++|++++|.++.++. .+..+++|++|++++|.++.++...+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 44444444444444322 2344444444444444433 23444444444444444444444444444444444444444
Q ss_pred CcccCCCccCCCCCCceEecCCCcCC
Q 009136 439 LRQVPSDGFKDIPMLQILDLSYNIAS 464 (542)
Q Consensus 439 i~~~~~~~~~~~~~L~~L~l~~n~~~ 464 (542)
++.++...+..+++|++|++++|.++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccCHHHhhCCcccCEEECcCCcce
Confidence 44444433444444444444444443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5e-15 Score=126.92 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=95.6
Q ss_pred ceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCcc-ccccCCccE
Q 009136 40 KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVK 118 (542)
Q Consensus 40 ~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~ 118 (542)
.+.++++|++|++++|.+..++......++|++|++++|.+..+ ..+..+++|++|++++|.++.+|.. +..+++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34557788888888888877754333344888888888888776 5677778888888888887777654 377788888
Q ss_pred EEcCCCcCCcCCc--cccCCCCCCeEEccCCccccCCcc----cccCCCccEEEccCCcccc
Q 009136 119 FDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTV 174 (542)
Q Consensus 119 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~L~l~~~~~~~ 174 (542)
|++++|++..++. .+..+++|++|++++|.+..++.. +..+++|+.|+++++...+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888887777665 666777777777777777766654 6666777777766665543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5.6e-15 Score=126.60 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=92.8
Q ss_pred ccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCce
Q 009136 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (542)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 455 (542)
+..+++|++|++++|.++.++......++|++|++++|.++++ ..+..+++|++|++++|+++.++...+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3446677777777777777754333334777888887777776 34677777888888887777776665577777888
Q ss_pred EecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCcc----ccCCCCCCEEECCCCc
Q 009136 456 LDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDNN 531 (542)
Q Consensus 456 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~----l~~~~~L~~L~l~~~~ 531 (542)
|++++|.+..+.. ...+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 93 L~L~~N~i~~~~~---------------------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGD---------------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGG---------------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchh---------------------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8887776643211 01345567788888888887777664 7778888888888776
Q ss_pred CC
Q 009136 532 IS 533 (542)
Q Consensus 532 l~ 533 (542)
+.
T Consensus 152 ~~ 153 (176)
T 1a9n_A 152 LK 153 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4e-14 Score=122.99 Aligned_cols=111 Identities=27% Similarity=0.416 Sum_probs=101.3
Q ss_pred ccccccEEEecCCCCCCCCcc--ccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcE
Q 009136 355 LSVTSKELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431 (542)
Q Consensus 355 ~~~~l~~l~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 431 (542)
.+..+++++++++.+..++.. +..+++|++|++++|.++.+ |..|..+++|++|++++|.+++++...|.++++|++
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 345889999999999988764 77899999999999999987 567999999999999999999999888999999999
Q ss_pred EEccCCCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (542)
Q Consensus 432 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 465 (542)
|++++|+++.+.+..+..+++|++|++++|.+..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9999999999888889999999999999998864
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.3e-14 Score=120.64 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=86.8
Q ss_pred CCCCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCc-CCccccCCCCCCeEE
Q 009136 67 LPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFK 143 (542)
Q Consensus 67 ~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~ 143 (542)
.++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 467778888887777 6666667777777777777777766 567777777777777777775 555555677777777
Q ss_pred ccCCccccCC--cccccCCCccEEEccCCcccccch---hhhhccccCcEEEcC
Q 009136 144 ASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIAS 192 (542)
Q Consensus 144 l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 192 (542)
+++|.+..++ ..+..+++|++|++++|.++.+.. ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776543 556667777777777777666554 446666666666554
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=4.6e-13 Score=114.78 Aligned_cols=127 Identities=28% Similarity=0.400 Sum_probs=73.1
Q ss_pred ccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (542)
Q Consensus 382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 461 (542)
.+.+++++++++.+|..+ .++|++|++++|.+++++...+..+++|++|++++|.++.++...|..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 355556655555555432 245666666666666655555556666666666666666555555555666666666666
Q ss_pred cCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCccc
Q 009136 462 IASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 462 ~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~ 510 (542)
.++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 665555555555666666666 4555555544 345566666666666544
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.6e-14 Score=151.46 Aligned_cols=190 Identities=21% Similarity=0.176 Sum_probs=111.3
Q ss_pred cCCcEEEcCCCcccchhHhhcCCCCCcEEEcC-----CCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEE
Q 009136 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVS-----HNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (542)
Q Consensus 45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~-----~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 119 (542)
++++.|++.++.+...+..+-....|+.+.+. .+.+...+..+..+.+|+.|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 56888999888887766554444444444333 3334444667888999999999999999998888899999999
Q ss_pred EcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc-
Q 009136 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG- 198 (542)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 198 (542)
+|++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.++.++.. +..+++|++|++++|.+..
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCC
Confidence 99999999999889999999999999999999998899999999999999999888766 8889999999999999875
Q ss_pred cccccCCCC-cccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136 199 MPETIGSLS-RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (542)
Q Consensus 199 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 240 (542)
+|..+.... ....+++.+|.+... ....++.++++.+
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~~l~l~~n 369 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRPEIP-----LPHERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC---------
T ss_pred ChHHHhhcchhhhHHhhccCcccCc-----CccccceeEeecc
Confidence 344433221 122356777766522 1234555666655
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=5.3e-15 Score=129.45 Aligned_cols=127 Identities=29% Similarity=0.328 Sum_probs=82.1
Q ss_pred CCcEEEcCCC--cccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136 46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (542)
Q Consensus 46 ~L~~L~l~~~--~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 123 (542)
.++...+.+. .++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 3455555443 34455666777777777777777766666 66667777777777777776666666667777777777
Q ss_pred CcCCcCCccccCCCCCCeEEccCCccccCCc--ccccCCCccEEEccCCcccc
Q 009136 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV 174 (542)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~ 174 (542)
|++..++ .+..+++|++|++++|.+..++. .+..+++|++|++++|++..
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 7666654 45666667777776666665443 45666666666666666543
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.42 E-value=1.5e-11 Score=119.35 Aligned_cols=102 Identities=19% Similarity=0.292 Sum_probs=53.4
Q ss_pred ccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136 378 EAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (542)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 456 (542)
.+..|+.+.+..+ ++.+.. +|.+|.+|+.+.+.. .++.++..+|.+|++|+.+.+.++.+..++..+|.+|.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3455555555443 333332 355555555555543 3444555555555666666665555555555555556666666
Q ss_pred ecCCCcCCCCCCCCCCCCchhHHHHH
Q 009136 457 DLSYNIASLPENPPFSSLPHLQELYL 482 (542)
Q Consensus 457 ~l~~n~~~~~~~~~~~~~~~L~~L~l 482 (542)
.+..+ ++.+...+|.+|.+|+++.+
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 55432 44444555555555555444
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.40 E-value=5.8e-11 Score=115.26 Aligned_cols=98 Identities=16% Similarity=0.319 Sum_probs=79.6
Q ss_pred cccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCC
Q 009136 375 EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453 (542)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L 453 (542)
.+..+.+++.+.+.. .+..++. +|.+|++|+.+.+.++.++.++..+|.+|.+|+.+.|.. .+..++..+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC
T ss_pred ccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCC
Confidence 344577888888865 3555554 688999999999998889999999999999999999974 4778888899999999
Q ss_pred ceEecCCCcCCCCCCCCCCCCc
Q 009136 454 QILDLSYNIASLPENPPFSSLP 475 (542)
Q Consensus 454 ~~L~l~~n~~~~~~~~~~~~~~ 475 (542)
+.+.+..+ ++.+...+|.+|+
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSS
T ss_pred CEEEECCc-cCEEchhHhhCCC
Confidence 99999654 7777777888775
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=1.7e-14 Score=126.20 Aligned_cols=117 Identities=23% Similarity=0.281 Sum_probs=81.5
Q ss_pred CCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCccccc
Q 009136 79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (542)
Q Consensus 79 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 158 (542)
.++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.+..++ .+..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 44556667888888888888888877777 777788888888888877777766666677777777777776654 4566
Q ss_pred CCCccEEEccCCcccccch-hhhhccccCcEEEcCCcccC
Q 009136 159 CSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN 197 (542)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 197 (542)
+++|++|++++|.+..++. ..+..+++|++|++++|.+.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 6667777776666665443 34556666666666666553
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=3.5e-12 Score=108.13 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=96.7
Q ss_pred cccEEEecCCCCCCCCccccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
..++++++++.++.+|..+ .+++++|++++|.++.+ |..|..+++|++|++++|++++++...|..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4578999999999999876 48999999999999998 45689999999999999999999999899999999999999
Q ss_pred CCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136 437 NPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (542)
Q Consensus 437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 465 (542)
|++..++...|..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999988889999999999999998863
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=1.1e-11 Score=105.11 Aligned_cols=106 Identities=27% Similarity=0.358 Sum_probs=91.3
Q ss_pred CccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (542)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 460 (542)
+.+.++++++.++.+|..+ .++|++|++++|.++++++..|.++++|++|+|++|+++.++...|..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4689999999999999765 38999999999999999998899999999999999999999988889999999999999
Q ss_pred CcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136 461 NIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510 (542)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 510 (542)
|+++.+.+..|..+ ++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNL----------------------KSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTC----------------------TTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCC----------------------CCCCEEEeCCCCCC
Confidence 99987766555544 56677777777654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=7.6e-12 Score=106.41 Aligned_cols=105 Identities=24% Similarity=0.391 Sum_probs=95.4
Q ss_pred ccEEEecCCCCCCCCccccccCCccEEECCCCcccccC-hhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (542)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n 437 (542)
.+.++++++.+..+|..+. ++|++|++++|.++.++ ..|..+++|++|++++|++++++...|..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4689999999999998764 89999999999999874 57889999999999999999999988899999999999999
Q ss_pred CCcccCCCccCCCCCCceEecCCCcCCC
Q 009136 438 PLRQVPSDGFKDIPMLQILDLSYNIASL 465 (542)
Q Consensus 438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 465 (542)
++..++...|..+++|+.|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999988889999999999999998863
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=1.1e-11 Score=105.41 Aligned_cols=108 Identities=22% Similarity=0.323 Sum_probs=91.0
Q ss_pred CccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (542)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 460 (542)
.-+.++++++.++.+|..+. ++|++|++++|.++++++..|.++++|++|+|++|+++.++...|..+++|++|++++
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34789999999999998653 8999999999999999988899999999999999999999888889999999999999
Q ss_pred CcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccccc
Q 009136 461 NIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI 512 (542)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l 512 (542)
|+++.+.+..|..+ ++|+.|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l----------------------~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNL----------------------KSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTC----------------------TTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccc----------------------cCCCEEEeCCCCcccc
Confidence 99987655555544 5666666666665533
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.8e-12 Score=124.41 Aligned_cols=153 Identities=17% Similarity=0.139 Sum_probs=84.4
Q ss_pred cCCcEEEcCCCcccc-----hhHhhcCC-CCCcEEEcCCCCCCcc--hHhhhCCCCCcEEecCCCccccC-----Cccc-
Q 009136 45 VDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKI-----PDEI- 110 (542)
Q Consensus 45 ~~L~~L~l~~~~~~~-----l~~~l~~~-~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~l-----~~~~- 110 (542)
++|++|++++|.+.. +...+... ++|++|++++|.+... ......+++|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 356666666666652 22333322 5666666666666521 11222344566666666665521 1112
Q ss_pred cccCCccEEEcCCCcCCc-----CCccccCCCCCCeEEccCCcccc-----CCcccccCCCccEEEccCCcccccchhh-
Q 009136 111 GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL- 179 (542)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~- 179 (542)
...++|++|++++|.++. ++..+...++|++|++++|.+.. +...+...++|++|++++|.++......
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234566667776666652 33344556667777777766652 2344555667777777777766544332
Q ss_pred ---hhccccCcEEEcCCcccC
Q 009136 180 ---IASWTMLTELIASKNLLN 197 (542)
Q Consensus 180 ---~~~~~~L~~L~l~~~~~~ 197 (542)
+...+.|++|++++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 334466777777777664
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=7.4e-13 Score=127.15 Aligned_cols=164 Identities=19% Similarity=0.212 Sum_probs=117.5
Q ss_pred cccccccEEEecCCCCCCCC-----ccccc-cCCccEEECCCCcccc--cChhcccCccCcEEEccCCcCCCCChhhhh-
Q 009136 354 RLSVTSKELSLEGMNLSAIP-----SEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILT- 424 (542)
Q Consensus 354 ~~~~~l~~l~l~~~~~~~~~-----~~~~~-~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~- 424 (542)
.....+++++++++.++... ..+.. +++|++|++++|.++. +......+++|++|++++|.+++.....+.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 34467889999999887422 22222 3689999999998865 222234567899999999999876655543
Q ss_pred ----CCCCCcEEEccCCCCcccCCC----ccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcC
Q 009136 425 ----SLSSLSCLKLDNNPLRQVPSD----GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRL 496 (542)
Q Consensus 425 ----~l~~L~~L~L~~n~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 496 (542)
..++|++|+|++|.+++.... ++..+++|++|++++|.+.... ...++..+..+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g------------------~~~L~~~L~~~ 210 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG------------------LELLAAQLDRN 210 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH------------------HHHHHHHGGGC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH------------------HHHHHHHHhcC
Confidence 468899999999998763322 2366889999999999775321 12334556667
Q ss_pred CCCCEEeCCCCcccc-----cCccccCCCCCCEEECCCCcCCcC
Q 009136 497 QQLRILDLSQNSLQS-----IPEGFKNLTSLTELDLSDNNISAL 535 (542)
Q Consensus 497 ~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~l~~l 535 (542)
++|+.|++++|.++. +...+..+++|++|+|++|+|++.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 889999999998773 455567788899999999988753
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=7.2e-10 Score=106.11 Aligned_cols=104 Identities=21% Similarity=0.209 Sum_probs=94.2
Q ss_pred cEEEecCC-CCCCCCccccccCCccEEECCC-CcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136 360 KELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (542)
Q Consensus 360 ~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~ 436 (542)
..+++++. .+..+|. +...++|++|++++ |.++.++. .|.++++|++|+|++|.++++++..|..+++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45788888 8999999 88899999999996 99999884 689999999999999999999999999999999999999
Q ss_pred CCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136 437 NPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (542)
Q Consensus 437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 465 (542)
|++..++...|..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999888777666 9999999998864
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=1.2e-09 Score=104.51 Aligned_cols=98 Identities=28% Similarity=0.358 Sum_probs=84.9
Q ss_pred cEEECCCC-cccccChhcccCccCcEEEccC-CcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136 383 TKLDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (542)
Q Consensus 383 ~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~ 460 (542)
..++++++ .++.+|. +..+++|++|+|++ |.++.++...|.++++|++|+|++|.++.+....|.++++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45688888 8999999 99999999999996 999999999999999999999999999999988899999999999999
Q ss_pred CcCCCCCCCCCCCCchhHHHHH
Q 009136 461 NIASLPENPPFSSLPHLQELYL 482 (542)
Q Consensus 461 n~~~~~~~~~~~~~~~L~~L~l 482 (542)
|+++.+.+..|..++ |+.|++
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEEC
T ss_pred CccceeCHHHcccCC-ceEEEe
Confidence 999877665555443 444444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1.1e-08 Score=97.28 Aligned_cols=177 Identities=13% Similarity=0.144 Sum_probs=82.3
Q ss_pred cCCcEEEcCCCccc---------chhHhhcCCCCCcEEEcCCCCCC----------cchHhhhCCCCCcEEecCCCcccc
Q 009136 45 VDLQKLILAHNNIE---------KLKEDLRNLPLLTVLNVSHNKLS----------ELPAAIGELHMLKSLDVSFNSIMK 105 (542)
Q Consensus 45 ~~L~~L~l~~~~~~---------~l~~~l~~~~~L~~L~l~~~~~~----------~l~~~~~~l~~L~~L~l~~~~~~~ 105 (542)
..++.|.+...... .+.++...+++|+.|.+.+.... .+...+..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 34666666543322 12333455667777776543221 234445566666666666552122
Q ss_pred CCccccccCCccEEEcCCCcCCcC-Cccc--cCCCCCCeEEccCC--c------cccCCccc--ccCCCccEEEccCCcc
Q 009136 106 IPDEIGSATALVKFDCSSNQLKEL-PSSL--GRCLNLSDFKASNN--C------ITSLPEDL--ADCSKMSKLDVEGNKL 172 (542)
Q Consensus 106 l~~~~~~l~~L~~L~l~~~~~~~~-~~~~--~~~~~L~~L~l~~~--~------~~~l~~~~--~~~~~L~~L~l~~~~~ 172 (542)
++. + ..++|++|++..+.+..- ...+ ..+++|++|+++.+ . +..+...+ ..+++|++|++.+|.+
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 322 2 255566666655544311 1111 14555555555321 0 11111111 1234444444444444
Q ss_pred cccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCcc-----CCCCCcCCCCCcEEEcCCCcCc
Q 009136 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALS 243 (542)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~ 243 (542)
.......+. + ...++.|+.|+++.|.+.. ++..+..+++|+.|++++|.++
T Consensus 265 ~~~~~~~la-------------------~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 265 QNVVVEMFL-------------------E-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHH-------------------H-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred chHHHHHHH-------------------h-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 321111111 0 1235666777776666552 2333455677777777777766
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=4e-09 Score=90.44 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=86.7
Q ss_pred ecCCcEEEcCCC-ccc-----chhHhhcCCCCCcEEEcCCCCCCc-----chHhhhCCCCCcEEecCCCcccc-----CC
Q 009136 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP 107 (542)
Q Consensus 44 ~~~L~~L~l~~~-~~~-----~l~~~l~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-----l~ 107 (542)
.++|++|++++| .+. .+.+.+...++|++|++++|.+.. +...+...++|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 688999999998 776 466778888999999999999873 45567778899999999998873 55
Q ss_pred ccccccCCccEEEc--CCCcCCc-----CCccccCCCCCCeEEccCCccc
Q 009136 108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (542)
Q Consensus 108 ~~~~~l~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 150 (542)
..+...+.|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66778889999999 7888872 4456667789999999998775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=9.8e-09 Score=87.98 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=96.1
Q ss_pred chhHhhcCCCCCcEEEcCCC-CCCc-----chHhhhCCCCCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCC
Q 009136 59 KLKEDLRNLPLLTVLNVSHN-KLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (542)
Q Consensus 59 ~l~~~l~~~~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~ 127 (542)
.+...+...+.|++|++++| .+.. +...+...++|++|+|++|.+. .+...+...++|++|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45677889999999999999 8873 4557788899999999999887 34555677789999999999988
Q ss_pred c-----CCccccCCCCCCeEEc--cCCcccc-----CCcccccCCCccEEEccCCccccc
Q 009136 128 E-----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTVL 175 (542)
Q Consensus 128 ~-----~~~~~~~~~~L~~L~l--~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~ 175 (542)
. +...+...+.|++|++ ++|.+.. +...+...++|++|++++|.+...
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3 4567788889999999 8888873 455677789999999999987643
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=3.4e-09 Score=100.73 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=90.1
Q ss_pred ccccEEEecCCCCC----------CCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhh--
Q 009136 357 VTSKELSLEGMNLS----------AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-- 424 (542)
Q Consensus 357 ~~l~~l~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-- 424 (542)
++|+.|.+.+.... .+...+..+|+|++|.++++.-..++. + .+++|++|++..|.++......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 46777777654321 233344556888888887773223443 3 378888888888877654444444
Q ss_pred CCCCCcEEEccCC--C------CcccCCCcc--CCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhh
Q 009136 425 SLSSLSCLKLDNN--P------LRQVPSDGF--KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDIL 494 (542)
Q Consensus 425 ~l~~L~~L~L~~n--~------i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 494 (542)
.+|+|++|+|+.+ . +..+.. .+ ..+++|+.|++++|.+.......+. ...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-------------------~a~ 276 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFL-------------------ESD 276 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHH-------------------HCS
T ss_pred cCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHH-------------------hCc
Confidence 6788888887531 1 111111 12 2478888888887765421100000 001
Q ss_pred cCCCCCEEeCCCCcccc-----cCccccCCCCCCEEECCCCcCC
Q 009136 495 RLQQLRILDLSQNSLQS-----IPEGFKNLTSLTELDLSDNNIS 533 (542)
Q Consensus 495 ~~~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~l~ 533 (542)
.+++|+.|+++.|.++. ++.++.++++|+.|++++|.|+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34677777777776653 3444556677777777777665
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=1.4e-07 Score=78.34 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=65.9
Q ss_pred cCCccEEECCCCcccccC-hhcccCccCcEEEccCC-cCCCCChhhhhCC----CCCcEEEccCCC-CcccCCCccCCCC
Q 009136 379 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVPSDGFKDIP 451 (542)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~l----~~L~~L~L~~n~-i~~~~~~~~~~~~ 451 (542)
...|++|++++|.+++.. ..+.+|++|++|++++| .+++.....+..+ ++|++|+|++|. +++....++..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 457899999998876521 23578999999999998 5888777777774 579999999986 7775555577889
Q ss_pred CCceEecCCCc
Q 009136 452 MLQILDLSYNI 462 (542)
Q Consensus 452 ~L~~L~l~~n~ 462 (542)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999884
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=2.3e-07 Score=77.06 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=70.7
Q ss_pred ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC-CcccCCCccCC----CCCCceEecCCCc-CCCCC
Q 009136 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKD----IPMLQILDLSYNI-ASLPE 467 (542)
Q Consensus 394 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~ 467 (542)
.+|.....-..|++||+++|.+++.....+.++++|++|+|++|. +++.....+.. +++|++|++++|. +++.+
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 355543345679999999999999888889999999999999996 77654444554 3589999999984 54321
Q ss_pred CCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCc-cc
Q 009136 468 NPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS-LQ 510 (542)
Q Consensus 468 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~-l~ 510 (542)
-..+..+++|++|++++|. ++
T Consensus 132 ----------------------l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 ----------------------IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp ----------------------HHHGGGCTTCCEEEEESCTTCC
T ss_pred ----------------------HHHHhcCCCCCEEECCCCCCCC
Confidence 1123457899999999995 55
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=2.9e-06 Score=76.26 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=40.7
Q ss_pred hCCCCCcEEecCCCccccCC---ccccccCCccEEEcCCCcCCcCCccccCCC--CCCeEEccCCcccc-CC-------c
Q 009136 88 GELHMLKSLDVSFNSIMKIP---DEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITS-LP-------E 154 (542)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-l~-------~ 154 (542)
.++++|++|+|++|.++.++ ..+..+++|+.|+|++|++..+. .+..+. +|++|++++|.+.. ++ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555555555555555432 33445566666666666555441 222222 66666666666542 22 1
Q ss_pred ccccCCCccEEE
Q 009136 155 DLADCSKMSKLD 166 (542)
Q Consensus 155 ~~~~~~~L~~L~ 166 (542)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245567777665
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.97 E-value=5.2e-06 Score=70.33 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=75.5
Q ss_pred ecCCcEEEcCCC-ccc-----chhHhhcCCCCCcEEEcCCCCCC-----cchHhhhCCCCCcEEecCCCccc-----cCC
Q 009136 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (542)
Q Consensus 44 ~~~L~~L~l~~~-~~~-----~l~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~ 107 (542)
-+.|++|+++++ .+. .+.+++.....|+.|+|++|.+. .+...+...+.|++|+|+.|.|. .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467888888875 665 45677888888888888888887 34556777788888888888877 344
Q ss_pred ccccccCCccEEEcCCCc---CC-----cCCccccCCCCCCeEEccCCcc
Q 009136 108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCI 149 (542)
Q Consensus 108 ~~~~~l~~L~~L~l~~~~---~~-----~~~~~~~~~~~L~~L~l~~~~~ 149 (542)
+.+..-+.|++|+++++. +. .+...+..-+.|++|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 456666778888887653 33 2334556667888888876654
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=6.2e-06 Score=74.05 Aligned_cols=78 Identities=31% Similarity=0.309 Sum_probs=47.5
Q ss_pred cCCccEEECCCCcccccC---hhcccCccCcEEEccCCcCCCCC-hhhhhCCCCCcEEEccCCCCcc-cC------CCcc
Q 009136 379 AGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQ-VP------SDGF 447 (542)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~i~~-~~------~~~~ 447 (542)
+++|+.|++++|.++.++ ..+..+++|+.|+|++|.++++. ...+..+ +|++|+|.+|++.. ++ ...+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 567777777777766543 34556777777777777777652 2223333 77777777777653 11 1124
Q ss_pred CCCCCCceEe
Q 009136 448 KDIPMLQILD 457 (542)
Q Consensus 448 ~~~~~L~~L~ 457 (542)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5567777664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.83 E-value=2.3e-05 Score=66.40 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=88.2
Q ss_pred chhHhhcCCCCCcEEEcCCC-CCC-----cchHhhhCCCCCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCC
Q 009136 59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (542)
Q Consensus 59 ~l~~~l~~~~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~ 127 (542)
.+...+.+.+.|+.|+|+++ .+. .+..++.....|+.|+|++|.+. .+.+.+...+.|++|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45566778889999999986 776 34567888899999999999887 45556677889999999999987
Q ss_pred -----cCCccccCCCCCCeEEccCCc---cc-----cCCcccccCCCccEEEccCCccc
Q 009136 128 -----ELPSSLGRCLNLSDFKASNNC---IT-----SLPEDLADCSKMSKLDVEGNKLT 173 (542)
Q Consensus 128 -----~~~~~~~~~~~L~~L~l~~~~---~~-----~l~~~~~~~~~L~~L~l~~~~~~ 173 (542)
.+...+..-+.|++|+++++. +. .+...+...++|+.|+++.+.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 344566667789999998653 33 34455777899999999876544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.00 E-value=0.0012 Score=52.04 Aligned_cols=55 Identities=27% Similarity=0.500 Sum_probs=35.9
Q ss_pred EEECCCCccc--ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136 384 KLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (542)
Q Consensus 384 ~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~ 440 (542)
.++.++.+++ .+|..+ .++|++|+|++|.|+.++...|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666666 666432 235677777777777777777777777777777777653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.00093 Score=52.75 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=36.2
Q ss_pred ceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCC
Q 009136 12 GSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS 81 (542)
Q Consensus 12 ~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~ 81 (542)
+.+++++++++ .+|..+. +++++|+|++|.++.++. .|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp---------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP---------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC---------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC---------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35677777777 7776553 357777777777776653 4566667777777666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.73 E-value=0.2 Score=36.91 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=34.5
Q ss_pred CCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (542)
Q Consensus 412 ~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 461 (542)
+..++.+...+|.+|.+|+.+.|.. .++.|...+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 3456667777777777777777764 456677777777777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.26 E-value=0.19 Score=37.11 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=37.3
Q ss_pred cCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH
Q 009136 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (542)
Q Consensus 435 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 482 (542)
.+..++.|...+|.+|.+|+++.|-.+ ++.+...+|.+|.+|+.+.+
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 345677888888999999999999755 77777888888877777666
Done!