BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009137
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 164 LSMTSAFLYALLTDRVLLINEESDMSNMFCEPFP-DASWILPEDFPFMNQLYSFGRDYAQ 222
++ SA Y +L D SD+ + + P D ++ + F F+ + Y Q
Sbjct: 476 INADSAGFYRVLYDDATF----SDVMGHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQ 531
Query: 223 SFGNMLENRMINTSTELLPSCLYL-YLSHDYDHHDKLFFCDQEQAILRNIPWLIMKANIY 281
N ++ N T ++ YL L+H +D D FC L +K +
Sbjct: 532 RIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDD-DARAFCRSRMQFLTGKQDENLKIALG 590
Query: 282 FLPSLFLM--SSFEEELSKLFPD 302
+ L++M S+ EE+SKLF D
Sbjct: 591 RVSRLYVMVDESYAEEMSKLFKD 613
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 164 LSMTSAFLYALLTDRVLLINEESDMSNMFCEPFP-DASWILPEDFPFMNQLYSFGRDYAQ 222
++ SA Y +L D SD+ + + P D ++ + F F+ + Y Q
Sbjct: 476 INADSAGFYRVLYDDATF----SDVMGHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQ 531
Query: 223 SFGNMLENRMINTSTELLPSCLYL-YLSHDYDHHDKLFFCDQEQAILRNIPWLIMKANIY 281
N ++ N T ++ YL L+H +D D FC L +K +
Sbjct: 532 RIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDD-DARAFCRSRMQFLTGKQDENLKIALG 590
Query: 282 FLPSLFLM--SSFEEELSKLFPD 302
+ L++M S+ EE+SKLF D
Sbjct: 591 RVSRLYVMVDESYAEEMSKLFKD 613
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 155 ANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLY 214
AN NRI TS L L+ D V + + + P P P LY
Sbjct: 562 ANTSFVNRIAD-TSLPLDELVADPVTAVEKLAQQEGQTGLPHPK--------IPLPRDLY 612
Query: 215 SFGRDYAQSFGNMLENRMINTSTELLPSCL 244
GRD + E+R+ + S+ LL S L
Sbjct: 613 GHGRDNSAGLDLANEHRLASLSSALLNSAL 642
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 155 ANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLY 214
AN NRI TS L L+ D V + + + P P P LY
Sbjct: 477 ANTSFVNRIAD-TSLPLDELVADPVTAVEKLAQQEGQTGLPHPK--------IPLPRDLY 527
Query: 215 SFGRDYAQSFGNMLENRMINTSTELLPSCL 244
GRD + E+R+ + S+ LL S L
Sbjct: 528 GHGRDNSAGLDLANEHRLASLSSALLNSAL 557
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 155 ANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLY 214
AN NRI TS L L+ D V + + + P P P LY
Sbjct: 477 ANTSFVNRIAD-TSLPLDELVADPVTAVEKLAQQEGQTGLPHPK--------IPLPRDLY 527
Query: 215 SFGRDYAQSFGNMLENRMINTSTELLPSCL 244
GRD + E+R+ + S+ LL S L
Sbjct: 528 GHGRDNSAGLDLANEHRLASLSSALLNSAL 557
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 155 ANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLY 214
AN NRI TS L L+ D V + + + P P P LY
Sbjct: 477 ANTSFVNRIAD-TSLPLDELVADPVTAVEKLAQQEGQTGLPHPK--------IPLPRDLY 527
Query: 215 SFGRDYAQSFGNMLENRMINTSTELLPSCL 244
GRD + E+R+ + S+ LL S L
Sbjct: 528 GHGRDNSAGLDLANEHRLASLSSALLNSAL 557
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,623,792
Number of Sequences: 62578
Number of extensions: 633364
Number of successful extensions: 1305
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1305
Number of HSP's gapped (non-prelim): 7
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)