Query 009137
Match_columns 542
No_of_seqs 137 out of 164
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 20:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03254 XG_FTase: Xyloglucan 100.0 1E-190 3E-195 1498.0 42.2 448 64-511 27-476 (476)
2 PF05830 NodZ: Nodulation prot 99.8 7.5E-18 1.6E-22 172.0 17.0 261 149-480 3-301 (321)
3 PF10250 O-FucT: GDP-fucose pr 98.0 3.7E-05 8.1E-10 78.8 11.9 146 314-469 172-337 (351)
4 PF01531 Glyco_transf_11: Glyc 97.5 0.00076 1.6E-08 69.2 11.1 42 440-483 236-277 (298)
5 KOG3705 Glycoprotein 6-alpha-L 94.2 0.055 1.2E-06 58.6 4.6 157 293-470 318-483 (580)
6 KOG3849 GDP-fucose protein O-f 31.0 44 0.00095 35.5 3.1 279 143-465 24-358 (386)
7 PRK10014 DNA-binding transcrip 27.0 1.8E+02 0.0039 29.4 6.7 123 347-480 27-151 (342)
8 PRK10727 DNA-binding transcrip 25.6 3.7E+02 0.008 27.3 8.7 125 345-480 20-145 (343)
9 cd00550 ArsA_ATPase Oxyanion-t 25.3 76 0.0017 32.0 3.6 36 149-184 1-36 (254)
10 PRK09526 lacI lac repressor; R 23.8 3.3E+02 0.0071 27.5 7.9 125 345-480 24-151 (342)
11 cd07023 S49_Sppa_N_C Signal pe 23.6 54 0.0012 31.9 2.1 47 443-489 79-136 (208)
12 cd07018 S49_SppA_67K_type Sign 22.8 43 0.00093 33.1 1.3 54 443-496 90-154 (222)
No 1
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=100.00 E-value=1.3e-190 Score=1498.01 Aligned_cols=448 Identities=65% Similarity=1.136 Sum_probs=434.4
Q ss_pred CCCCCCCccccccCCCCcccCCccccchhhhhccccCCCCCCChHHHHHHHHHHHhhcccCCCchhHHHHHHHHhcCCCC
Q 009137 64 HDSSQPTSDALLGGLLAPDIRRKSCLSRYQSISYRKSSLHKPSPYLVSKLREYEKLHKRCGPYTKSYKKSIKELVSGQID 143 (542)
Q Consensus 64 ~~~~~~~~d~llggLL~~~fde~sC~SRy~s~lyrk~s~~~pSpyL~skLR~YE~lHrrCgp~t~~Y~~a~~~l~s~~~~ 143 (542)
....+..+|+||||||++||||+||+||||+++|||+++|+|||||++|||+||+|||||||||++|++|++||++|+++
T Consensus 27 ~~~~~~~~d~llgglL~~~fde~sC~SRy~~~~yrk~s~~~pSpyL~skLR~YE~lHrrCgp~t~~y~~a~~~L~s~~~~ 106 (476)
T PF03254_consen 27 SQSAESPNDKLLGGLLSPGFDERSCLSRYQSSLYRKPSPHKPSPYLVSKLRRYEALHRRCGPGTESYNKAVEQLRSGHSD 106 (476)
T ss_pred CCccccccccccccccCCCCCcccccchhhhhhhcCCCCCCCCHHHHHHHHHHHHHHhhhCCCchhhHHHHHHHhccCCC
Confidence 44556677999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCceEEEEcccCCcchhHHHHHHHHHHHHHhCceeeecCCCCcCCCccCCCCCCcccCCCCCCCcccccccCCCchhh
Q 009137 144 SSSNCRYVVWLANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLYSFGRDYAQS 223 (542)
Q Consensus 144 ~~~~CkYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~s 223 (542)
++++||||||++++||||||||||||||||||||||||||+++||++|||||||||||+||+|||+.+++.+++.++++|
T Consensus 107 ~~~~CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~~~~~~~s 186 (476)
T PF03254_consen 107 GTSECKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGFSQESAES 186 (476)
T ss_pred CCCCCcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCCCCCchHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHhcccCCCCCCCCCcEEEEEeccCCCCCCceeecchhhhhhcCCCEEEEeccccccccccccchhHHHHHhhCCCc
Q 009137 224 FGNMLENRMINTSTELLPSCLYLYLSHDYDHHDKLFFCDQEQAILRNIPWLIMKANIYFLPSLFLMSSFEEELSKLFPDK 303 (542)
Q Consensus 224 yg~ml~n~~~~~~~~~~p~~~yl~L~~~~~~~D~~FfCd~~Q~~L~kvpWLi~~Sd~YFvP~LFl~P~f~~eL~~lFP~k 303 (542)
||||++|+.++++...+|+|+||||+|+++++|++||||++|++|+|||||+|+||+||||+||++|+||+||++|||+|
T Consensus 187 ygnml~~~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl~P~f~~eL~~lFP~k 266 (476)
T PF03254_consen 187 YGNMLKNKSINNSDNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFLVPSFRPELDRLFPEK 266 (476)
T ss_pred HHHHHhcCCccccccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhhchHHHHHHHHhcCCh
Confidence 99999999998876789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCCCchhHHHHHHHHHHhhccCCCCcCC-CCc-cc
Q 009137 304 EMVFHHLGRYLFHPSNQVWKLITSYYKKYLAKAEERIGIQIRIFDNKTSPVEHVMDQILTCTDKEKLLPRVDM-GKS-IV 381 (542)
Q Consensus 304 d~vFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~~~~~~v~~qIl~Ct~~e~lLP~v~~-~~~-~~ 381 (542)
|+||||||||||||+|+|||+|+|||++|||+||+|||||||+|+.+++++++++|||++|+++|||||++.+ ++. ++
T Consensus 267 ~tvFhhL~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e~LLP~v~~~~~~~~~ 346 (476)
T PF03254_consen 267 DTVFHHLGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQEKLLPEVVDTQEPAAS 346 (476)
T ss_pred hHHHHHHHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhhcccCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999943 333 45
Q ss_pred CCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHHHhhcCCceeecCCC
Q 009137 382 APSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEINLLSMMDVLVTSAWS 461 (542)
Q Consensus 382 ~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~S 461 (542)
++.++.++||||||||++||||+||+|||+++|++||+|+||||||||+|++|+++||+||||||||||+||+||||+||
T Consensus 347 ~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~S 426 (476)
T PF03254_consen 347 SSSKSQKSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGWS 426 (476)
T ss_pred ccCCCCceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCCC
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhcCCCceEEeecCCCCCCCCCcccCCCCCCCCCCCCccccCc
Q 009137 462 TFGYVAQGLGGKKPWILYKIENKTIPDPVCGRAKSLEPCFHAPPVYDCKA 511 (542)
Q Consensus 462 TFGYVAqgLgGl~PwiL~~p~~~~~~~ppC~r~~S~EPCfh~pp~ydC~~ 511 (542)
|||||||||||||||||++|+|+++|||||+|++|||||||+||+|||+|
T Consensus 427 TFGYVAqgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~~dC~a 476 (476)
T PF03254_consen 427 TFGYVAQGLGGLRPWILYKPENQTVPDPPCVRAMSMEPCFHAPPFYDCKA 476 (476)
T ss_pred CchhHHHhhcCCCceEEecCcccCCCCCCCcCCCCCCCCCCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999986
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.77 E-value=7.5e-18 Score=171.97 Aligned_cols=261 Identities=22% Similarity=0.306 Sum_probs=139.9
Q ss_pred eEEEEcccCCcchhHHHHHHHHHHHHHhCceeeecCCCCcCCCccCCCCCCcccCCCCCCCcccccccCCCchhhHHHHH
Q 009137 149 RYVVWLANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLYSFGRDYAQSFGNML 228 (542)
Q Consensus 149 kYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~syg~ml 228 (542)
||||..+-.||||++.+|+||--||==|+|.|.|||+++- ..-+||-| .||.- +.... + -=|+++
T Consensus 3 r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~--~~~~~f~n-------~f~~f--fepv~-~---i~~~~~ 67 (321)
T PF05830_consen 3 RFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSC--YLDQPFTN-------AFPVF--FEPVE-D---IAGVRV 67 (321)
T ss_dssp -EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-T--T-SSTTSB-------SHHHH--B---S-E---ETTEEE
T ss_pred ceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCce--ecCCcccc-------cCCcc--cchhh-h---hcCcee
Confidence 7999999999999999999999999999999999998641 12234432 23221 11100 0 001111
Q ss_pred h-cccCCCCCCC---CCcEEEEEeccCCCCCCceeecchhhhhhcCCCEEEEeccccccccccccchhHHHHHhhCCCcc
Q 009137 229 E-NRMINTSTEL---LPSCLYLYLSHDYDHHDKLFFCDQEQAILRNIPWLIMKANIYFLPSLFLMSSFEEELSKLFPDKE 304 (542)
Q Consensus 229 ~-n~~~~~~~~~---~p~~~yl~L~~~~~~~D~~FfCd~~Q~~L~kvpWLi~~Sd~YFvP~LFl~P~f~~eL~~lFP~kd 304 (542)
. +..++.-+-+ .|.+- ........+|++.|- =.=++||+.||-..+
T Consensus 68 ~~~d~i~~~~~~g~~fp~~w-------~~p~~~~~~~pd~qi-----------------------~re~d~l~~lf~~~~ 117 (321)
T PF05830_consen 68 ICDDRINQFSFPGPFFPAWW-------NKPSIDCVYRPDEQI-----------------------FRERDELRQLFQSQE 117 (321)
T ss_dssp E-SGGGGT----SSEESGGG-------GS-GGGGS---HHHH-----------------------HHHHHHHHHHHHSSS
T ss_pred EecchhhhhcCCCCcChhHH-------hCCCcceecCChHHH-----------------------hhhhHHHHHHhhccc
Confidence 1 1112110000 11110 011233456666662 122455665554433
Q ss_pred -----------------------chhhhccccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCC-----Cch-h
Q 009137 305 -----------------------MVFHHLGRYLFHPSNQVWKLITSYYKKYLAKAEERIGIQIRIFDNKT-----SPV-E 355 (542)
Q Consensus 305 -----------------------~vFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~-----~~~-~ 355 (542)
.+|-+ +.|+.+|-.+|..+|+.++++ ...|||+||..+.+. ..+ +
T Consensus 118 d~~a~~vv~d~c~~~~c~~~aeR~if~s-----lkpR~eIqarID~iy~ehf~g-~~~IGVHVRhGngeD~~~h~~~~~D 191 (321)
T PF05830_consen 118 DHEANTVVCDACLMWRCDEEAEREIFSS-----LKPRPEIQARIDAIYREHFAG-YSVIGVHVRHGNGEDIMDHAPYWAD 191 (321)
T ss_dssp --S-SEEEE-S--TTSS-HHHHHHHHHH-----S-B-HHHHHHHHHHHHHHTTT-SEEEEEEE---------------HH
T ss_pred ccccchhhhHhhcCCcchhHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCC-CceEEEEEeccCCcchhccCccccC
Confidence 12443 459999999999999999986 458999999765421 111 1
Q ss_pred --HHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcc
Q 009137 356 --HVMDQILTCTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQS 433 (542)
Q Consensus 356 --~v~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~ 433 (542)
..+++|..-..+.+.++ ..+.+.|||+|++++..|++|..|.+.-|. ..-+++++.+.-+.
T Consensus 192 ~e~~L~~V~~ai~~ak~~~-------------~~k~~~IFLATDSaeVid~fr~~FPdiiti----~k~F~~~~~g~Lhs 254 (321)
T PF05830_consen 192 EERALRQVCTAIDKAKALA-------------PPKPVRIFLATDSAEVIDQFRKKFPDIITI----PKQFPASQAGPLHS 254 (321)
T ss_dssp HHHHHHHHHHHHHHHHTS---------------SS-EEEEEEES-HHHHHHHHHHSTTEE--------------------
T ss_pred chHHHHHHHHHHHHHHhcc-------------CCCCeeEEEecCcHHHHHHHHHHCCCeEEc----ccccCCCCCCcCcc
Confidence 24566655554444443 235679999999999999999999753222 12267777653333
Q ss_pred cch--hhhHHHHHHHHHhhcCCcee-ecCCCchhHHHhhhcCCCceEEee
Q 009137 434 ENN--VHNQKAWAEINLLSMMDVLV-TSAWSTFGYVAQGLGGKKPWILYK 480 (542)
Q Consensus 434 ~~~--~h~~kAlaEmyLLS~sD~LV-tS~~STFGYVAqgLgGl~PwiL~~ 480 (542)
.+. .+-.+||+||||||.||+|| .|+-|+||-+|+=++ |=++--
T Consensus 255 ~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~---pr~~~~ 301 (321)
T PF05830_consen 255 AAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFV---PRVIEF 301 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH----SEEEEE
T ss_pred cccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhc---chheee
Confidence 221 34578999999999999999 899999999999777 877743
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.05 E-value=3.7e-05 Score=78.79 Aligned_cols=146 Identities=22% Similarity=0.259 Sum_probs=67.2
Q ss_pred ccCCchhHHHHHHHHHHHhhhcccceeeEEEEEe-cC----CCCchhHHHHHHHHHHhhccCCCCcCCC---Cc----cc
Q 009137 314 LFHPSNQVWKLITSYYKKYLAKAEERIGIQIRIF-DN----KTSPVEHVMDQILTCTDKEKLLPRVDMG---KS----IV 381 (542)
Q Consensus 314 LfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf-~~----~~~~~~~v~~qIl~Ct~~e~lLP~v~~~---~~----~~ 381 (542)
.+++++.|-.+.++|-+..+++...=|||++|+- |. +.....+.+ +-.+|..+..+.+..... -+ .+
T Consensus 172 ~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (351)
T PF10250_consen 172 YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLL-ASPRCWGKKSINPEKKRRNGCCPSTPQEA 250 (351)
T ss_dssp G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----T-TTHHHH-GGGTT-----HHHHS--HHHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHH-HHhHhhccccccchhhhhcCCCCChHHHH
Confidence 6899999999999999999966677899999996 44 000000011 112333222222211000 00 00
Q ss_pred ----CCCCCCcceEEEEEeccHH----HHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHHHhhcCC
Q 009137 382 ----APSGKGKSKAVLITSLVPY----YYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEINLLSMMD 453 (542)
Q Consensus 382 ----~~~~~~k~kaVlVtSL~~~----y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD 453 (542)
...+..+.+.|+|||+... ..+.++++|.+.-+. +.+ ++++|.+.+.+ ++.|++|+++++.||
T Consensus 251 ~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~--~~~----~~~~~~~~~~~---~~~a~vD~~i~~~s~ 321 (351)
T PF10250_consen 251 KQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTK--DDL----LSHEELEPLND---DQLAMVDQEICSRSD 321 (351)
T ss_dssp HHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGG--GT------EE--S--------S--HHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEec--ccc----CCHHHhhhccc---cchhHHHHHHHhcCC
Confidence 0112234579999999931 335555555432211 112 23455555544 689999999999999
Q ss_pred ceeecCCCchhHHHhh
Q 009137 454 VLVTSAWSTFGYVAQG 469 (542)
Q Consensus 454 ~LVtS~~STFGYVAqg 469 (542)
+.|-|..|||-..-.+
T Consensus 322 ~Figt~~Stfs~~i~~ 337 (351)
T PF10250_consen 322 VFIGTCGSTFSSNIAR 337 (351)
T ss_dssp EEEE-TT-HHHHHHHH
T ss_pred EEEecCcchhHHHhhc
Confidence 9999999999865443
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=97.50 E-value=0.00076 Score=69.24 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCceeecCCCchhHHHhhhcCCCceEEeecCC
Q 009137 440 QKAWAEINLLSMMDVLVTSAWSTFGYVAQGLGGKKPWILYKIEN 483 (542)
Q Consensus 440 ~kAlaEmyLLS~sD~LVtS~~STFGYVAqgLgGl~PwiL~~p~~ 483 (542)
..++.||+|||.||+.|.| -||||.-|+=|++= +=+.+-|.+
T Consensus 236 ~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~~-~~i~i~p~~ 277 (298)
T PF01531_consen 236 NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSKN-DKIVIAPIK 277 (298)
T ss_pred CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCCC-CCEEEECCc
Confidence 3678899999999999999 59999999999874 544444443
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.055 Score=58.63 Aligned_cols=157 Identities=19% Similarity=0.234 Sum_probs=92.1
Q ss_pred HHHHHhhCCCccchh--hhccccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCCC-----chhHHHHHHH--H
Q 009137 293 EEELSKLFPDKEMVF--HHLGRYLFHPSNQVWKLITSYYKKYLAKAEERIGIQIRIFDNKTS-----PVEHVMDQIL--T 363 (542)
Q Consensus 293 ~~eL~~lFP~kd~vF--hhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~~-----~~~~v~~qIl--~ 363 (542)
-+.|.++--+.- || ...-.||+.|....-..+++=-.+ |.--..-||+|||..+.-++ +.++.|.-+- -
T Consensus 318 a~rL~rlHgdP~-vwwVgqFikYL~Rpqp~t~~~l~~a~k~-lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f 395 (580)
T KOG3705|consen 318 AERLTRLHGDPP-VWWVGQFIKYLMRPQPATQEKLDKALKS-LGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWF 395 (580)
T ss_pred HHHHHHhcCCCc-eeeHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHHH
Confidence 344555554443 32 455679999999887777643332 22223679999999886532 2344554321 1
Q ss_pred HHhhccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHH
Q 009137 364 CTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAW 443 (542)
Q Consensus 364 Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAl 443 (542)
=+.+.+- ..-.+.||++|+.+...++.|+.|.+...-+..-|....-- .-++-+. .-+--.
T Consensus 396 ~~le~rg---------------~~~~rRiflAsDDp~vv~EAk~kYPnYe~igd~eia~~A~l---~nRYTd~-sL~GvI 456 (580)
T KOG3705|consen 396 KVLEKRG---------------KPLERRIFLASDDPTVVPEAKNKYPNYEVIGDTEIAKTAQL---NNRYTDA-SLMGVI 456 (580)
T ss_pred HHHHHhC---------------CchhheEEEecCCchhchHhhccCCCcEEeccHHHHHHhhc---cccchhh-hhhhee
Confidence 1111110 11246899999999999999999987642211111100000 1111111 224566
Q ss_pred HHHHHhhcCCceeecCCCchhHHHhhh
Q 009137 444 AEINLLSMMDVLVTSAWSTFGYVAQGL 470 (542)
Q Consensus 444 aEmyLLS~sD~LVtS~~STFGYVAqgL 470 (542)
.||++||.+|.||.|=-|----||.-+
T Consensus 457 lDIh~LS~~d~LVCTFSSQVCRvaYEi 483 (580)
T KOG3705|consen 457 LDIHILSKVDYLVCTFSSQVCRVAYEI 483 (580)
T ss_pred eeeeeecccceEEEechHHHHHHHHHH
Confidence 899999999999999888877777543
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.04 E-value=44 Score=35.54 Aligned_cols=279 Identities=18% Similarity=0.307 Sum_probs=139.4
Q ss_pred CCCCCceEEEEcccCC-cchhHHHHHHHHHHHHHhCceeeecCCCCcCCCccCCCCCCcccCCCCCCCcccccccCCCch
Q 009137 143 DSSSNCRYVVWLANCG-LGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLYSFGRDYA 221 (542)
Q Consensus 143 ~~~~~CkYlVw~~~~G-LGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~ 221 (542)
++.+.-.||++-|.-| .||+.=-......+|=+-||.|.+.+.-+.. -|.++=+ --|+. .-|..+.-
T Consensus 24 ~~~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~------~pe~~n~---~vpf~---~yF~vepl 91 (386)
T KOG3849|consen 24 GSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYK------HPETKNL---MVPFE---FYFQVEPL 91 (386)
T ss_pred CCCCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhcc------CCccccc---ccchh---heeecccH
Confidence 3456778999998755 9999988888888999999999987643221 1111100 01111 01122222
Q ss_pred hhHHHHHhcccCCCCCCCCCcEEEEEeccC-CCCCCceeecchh--hhhhcC--------CC----E----EEEeccccc
Q 009137 222 QSFGNMLENRMINTSTELLPSCLYLYLSHD-YDHHDKLFFCDQE--QAILRN--------IP----W----LIMKANIYF 282 (542)
Q Consensus 222 ~syg~ml~n~~~~~~~~~~p~~~yl~L~~~-~~~~D~~FfCd~~--Q~~L~k--------vp----W----Li~~Sd~YF 282 (542)
..|-+++.... |+. +|+.+ +....+.-||++. |+-=.| -| | +-+-.+.||
T Consensus 92 ~~YhRVitm~d----------Fm~-klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f 160 (386)
T KOG3849|consen 92 AKYHRVITMQD----------FMK-KLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYF 160 (386)
T ss_pred hhhhhheeHHH----------HHH-HhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccc
Confidence 22333221100 000 11111 1223344455544 110000 01 2 556677899
Q ss_pred cccccccchh--HHHHHhhCCCcc-ch--h-------------hhccccccCCchhHHHHHHHHHHHhhhcccceeeEEE
Q 009137 283 LPSLFLMSSF--EEELSKLFPDKE-MV--F-------------HHLGRYLFHPSNQVWKLITSYYKKYLAKAEERIGIQI 344 (542)
Q Consensus 283 vP~LFl~P~f--~~eL~~lFP~kd-~v--F-------------hhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQI 344 (542)
.+.=|-...- ++.-..=||.++ -| | -.|-+|| .=+..+-+.-+.|-.+.|++ .=|||+.
T Consensus 161 ~~i~Fd~~~~~~~~kW~~kfp~eeyPVLAf~gAPA~FPv~~e~~~lQkYl-~WS~r~~e~~k~fI~a~L~r--pfvgiHL 237 (386)
T KOG3849|consen 161 GDIGFDLNQMGSRKKWLEKFPSEEYPVLAFSGAPAPFPVKGEVWSLQKYL-RWSSRITEQAKKFISANLAR--PFVGIHL 237 (386)
T ss_pred cccccchhhcchHHHHHhhCCcccCceeeecCCCCCCccccccccHHHHH-HHHHHHHHHHHHHHHHhcCc--ceeEEEe
Confidence 9976633322 122333355544 11 1 1233442 22344445556777888886 4799999
Q ss_pred EEecCCCCchhHHHH-------HHHHHHhhccC----CCCcCCCC-ccc-----CCCCC-CcceEEEEEeccHHHHHHHH
Q 009137 345 RIFDNKTSPVEHVMD-------QILTCTDKEKL----LPRVDMGK-SIV-----APSGK-GKSKAVLITSLVPYYYEKMM 406 (542)
Q Consensus 345 Rvf~~~~~~~~~v~~-------qIl~Ct~~e~l----LP~v~~~~-~~~-----~~~~~-~k~kaVlVtSL~~~y~e~lr 406 (542)
|.-.+--.-.+++-| .--.|.-..+- -|++-.-+ ... ..-++ ..-|+|||+|++..|.++|.
T Consensus 238 Rng~DWvraCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~Eln 317 (386)
T KOG3849|consen 238 RNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDELN 317 (386)
T ss_pred ecCchHHHHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccchhhhHHHH
Confidence 964321000011111 00123321111 11110000 000 00011 13579999999999999988
Q ss_pred HHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHHHhhcCCceeecCCCchhH
Q 009137 407 NMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEINLLSMMDVLVTSAWSTFGY 465 (542)
Q Consensus 407 ~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGY 465 (542)
.-.-... |+||.--. ..+-.|.+.|.-+|..|---.|||.-
T Consensus 318 ~aL~~~~------i~vh~l~p------------dd~y~dLaIlGqadhFiGNCvSsfsa 358 (386)
T KOG3849|consen 318 EALKPYE------IEVHRLEP------------DDMYTDLAILGQADHFIGNCVSSFSA 358 (386)
T ss_pred Hhhcccc------eeEEecCc------------ccchhhhhhhcccchhhhhhHHHHHH
Confidence 6553322 67764322 24567999999999999877777754
No 7
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=26.96 E-value=1.8e+02 Score=29.39 Aligned_cols=123 Identities=9% Similarity=0.084 Sum_probs=70.5
Q ss_pred ecCCCCchhHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCC
Q 009137 347 FDNKTSPVEHVMDQILTCTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPS 426 (542)
Q Consensus 347 f~~~~~~~~~v~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPS 426 (542)
++.++.-.++.-++|++.+.+.+-.|+.... ....+..+.++|++.++...|+..+.+-..+.....|-.+-++. +
T Consensus 27 Ln~~~~vs~~tr~~V~~~a~elgY~p~~~a~---~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~-~ 102 (342)
T PRK10014 27 LSGKGRISTATGERVNQAIEELGFVRNRQAS---ALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQ-G 102 (342)
T ss_pred HCCCCCCCHHHHHHHHHHHHHhCCCcCHHHH---hhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEe-C
Confidence 3333333466678899999998888864221 12234456789999888888888877666555555564454442 2
Q ss_pred chhhhcccchhhhHHHHHHHHHhhcCCceeecCCC-c-hhHHHhhhcCCCceEEee
Q 009137 427 HEEEQQSENNVHNQKAWAEINLLSMMDVLVTSAWS-T-FGYVAQGLGGKKPWILYK 480 (542)
Q Consensus 427 hEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-T-FGYVAqgLgGl~PwiL~~ 480 (542)
... ...+....+..+-.-.|.+|..+-. . --.+..-...=.|.|+..
T Consensus 103 ~~~-------~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~ 151 (342)
T PRK10014 103 GKD-------GEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFAS 151 (342)
T ss_pred CCC-------HHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEe
Confidence 211 1223445555555568888877532 1 233333222223888763
No 8
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=25.59 E-value=3.7e+02 Score=27.31 Aligned_cols=125 Identities=10% Similarity=0.109 Sum_probs=70.0
Q ss_pred EEecCCCCchhHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEec
Q 009137 345 RIFDNKTSPVEHVMDQILTCTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQ 424 (542)
Q Consensus 345 Rvf~~~~~~~~~v~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~q 424 (542)
|+++.++.-.++.-+.|++.+.+-+--|+..... ...+..+.++|++.++...|+..+.+-..+.....|-.+-+.
T Consensus 20 rvLn~~~~Vs~~tr~rV~~~a~elgY~pn~~ar~---l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~- 95 (343)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESLSYHPNANARA---LAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIG- 95 (343)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHh---hhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEE-
Confidence 4444444334677788999999888888652211 122345678888888777777666554433333334333333
Q ss_pred CCchhhhcccchhhhHHHHHHHHHhhcCCceeecCCC-chhHHHhhhcCCCceEEee
Q 009137 425 PSHEEEQQSENNVHNQKAWAEINLLSMMDVLVTSAWS-TFGYVAQGLGGKKPWILYK 480 (542)
Q Consensus 425 PShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-TFGYVAqgLgGl~PwiL~~ 480 (542)
.+.+.. ..+....++.+-.-.|.+|..+.. +--.+.+-..|+.|.|+..
T Consensus 96 ~~~~~~-------~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~p~vV~i~ 145 (343)
T PRK10727 96 NGYHNE-------QKERQAIEQLIRHRCAALVVHAKMIPDAELASLMKQIPGMVLIN 145 (343)
T ss_pred eCCCCH-------HHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCEEEEe
Confidence 232211 123445566566678998887642 2233444445665566653
No 9
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.34 E-value=76 Score=31.99 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=32.7
Q ss_pred eEEEEcccCCcchhHHHHHHHHHHHHHhCceeeecC
Q 009137 149 RYVVWLANCGLGNRILSMTSAFLYALLTDRVLLINE 184 (542)
Q Consensus 149 kYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~ 184 (542)
|+++..+-.|-|.-.++.+.|..+|-.-.||||||.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 577888889999999999999999999999999974
No 10
>PRK09526 lacI lac repressor; Reviewed
Probab=23.78 E-value=3.3e+02 Score=27.49 Aligned_cols=125 Identities=8% Similarity=0.062 Sum_probs=66.1
Q ss_pred EEecCCCCchhHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEec
Q 009137 345 RIFDNKTSPVEHVMDQILTCTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQ 424 (542)
Q Consensus 345 Rvf~~~~~~~~~v~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~q 424 (542)
|+++..+.-.++.-++|+.++.+-+--|+..... ...+..+.++|++.++...|+..+.+-..+.....|=.+.++.
T Consensus 24 rvLn~~~~vs~~tr~rV~~~a~elgY~pn~~a~~---l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~ 100 (342)
T PRK09526 24 RVLNQASHVSAKTREKVEAAMAELNYVPNRVAQQ---LAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISM 100 (342)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHCCCcCHHHHH---hhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3444443333667788999998888888642211 1223446789998887666665555444333334454455543
Q ss_pred CCchhhhcccchhhhHHHHHHHHHhhcCCceeec-CCCc--hhHHHhhhcCCCceEEee
Q 009137 425 PSHEEEQQSENNVHNQKAWAEINLLSMMDVLVTS-AWST--FGYVAQGLGGKKPWILYK 480 (542)
Q Consensus 425 PShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS-~~ST--FGYVAqgLgGl~PwiL~~ 480 (542)
...+.. ..+....+..+-.-.|.+|.. +... ...+.+-..| .|.|+..
T Consensus 101 ~~~~~~-------~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~~~~-iPvV~~d 151 (342)
T PRK09526 101 VERSGV-------EACQAAVNELLAQRVSGVIINVPLEDADAEKIVADCAD-VPCLFLD 151 (342)
T ss_pred CCCChH-------HHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhhcCC-CCEEEEe
Confidence 222111 113344455455678988874 3221 2233322234 3877753
No 11
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=23.56 E-value=54 Score=31.90 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCceeecCCCchhHHHh---hh--------cCCCceEEeecCCCCCCCC
Q 009137 443 WAEINLLSMMDVLVTSAWSTFGYVAQ---GL--------GGKKPWILYKIENKTIPDP 489 (542)
Q Consensus 443 laEmyLLS~sD~LVtS~~STFGYVAq---gL--------gGl~PwiL~~p~~~~~~~p 489 (542)
=+-.+|.+.||.++.++-|+||-++- .+ -|+++.++...+.++..+|
T Consensus 79 s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~ 136 (208)
T cd07023 79 SGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSP 136 (208)
T ss_pred hHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCC
Confidence 35679999999999999998875532 21 3788888855554444444
No 12
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=22.82 E-value=43 Score=33.14 Aligned_cols=54 Identities=15% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCceeecCCCchhHHHhhh-----------cCCCceEEeecCCCCCCCCCcccCCC
Q 009137 443 WAEINLLSMMDVLVTSAWSTFGYVAQGL-----------GGKKPWILYKIENKTIPDPVCGRAKS 496 (542)
Q Consensus 443 laEmyLLS~sD~LVtS~~STFGYVAqgL-----------gGl~PwiL~~p~~~~~~~ppC~r~~S 496 (542)
-+..||.|.||.++.++-+.||-++-.. -|+++-++...+.+...+|-....+|
T Consensus 90 sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s 154 (222)
T cd07018 90 QGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMS 154 (222)
T ss_pred chhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCC
Confidence 3678999999999999999998865332 28999988666555555655444444
Done!