Query 009137
Match_columns 542
No_of_seqs 137 out of 164
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 19:39:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhc_A NODZ, nodulation fucosy 100.0 8.8E-42 3E-46 344.1 9.5 278 146-473 2-299 (330)
2 2de0_X Alpha-(1,6)-fucosyltran 99.6 4.6E-14 1.6E-18 152.9 20.1 316 147-534 144-481 (526)
3 3zy2_A Putative GDP-fucose pro 97.7 7.5E-05 2.6E-09 77.6 9.2 138 308-468 185-341 (362)
4 4ap5_A GDP-fucose protein O-fu 97.1 0.028 9.5E-07 58.4 19.0 120 318-467 222-372 (408)
5 2cpd_A Apobec-1 stimulating pr 23.4 1.7E+02 0.0057 23.1 6.0 58 387-446 13-71 (99)
6 3kjx_A Transcriptional regulat 21.6 2.6E+02 0.0088 26.8 8.0 122 346-479 30-153 (344)
7 1j26_A Immature colon carcinom 20.4 1.9E+02 0.0064 25.3 6.0 58 386-446 38-102 (112)
8 2o2g_A Dienelactone hydrolase; 17.6 1.4E+02 0.0049 25.4 4.7 60 270-334 160-223 (223)
9 2wtm_A EST1E; hydrolase; 1.60A 16.5 1.9E+02 0.0064 25.9 5.4 60 270-335 189-251 (251)
10 3dbi_A Sugar-binding transcrip 13.8 2.5E+02 0.0085 26.8 5.7 114 355-480 32-150 (338)
No 1
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=100.00 E-value=8.8e-42 Score=344.07 Aligned_cols=278 Identities=18% Similarity=0.201 Sum_probs=196.3
Q ss_pred CCceEEEEcccCCcchhHHHHHHHHHHHHHhCceeeecCCCCcCCCccCCCCCCcccCCCCCCCcccccccCCCchhhHH
Q 009137 146 SNCRYVVWLANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLYSFGRDYAQSFG 225 (542)
Q Consensus 146 ~~CkYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~syg 225 (542)
+.||||||....||||||+.+||||+||++|+|+|+||+.+ ++||+ .|+++|+ |.+||-.. ++++
T Consensus 2 ~~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~---~~y~~-~~~~~~f-p~~F~~v~----------~~~~ 66 (330)
T 2hhc_A 2 TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG---SCYVE-QPFSNAF-PAFFEPVE----------DIAG 66 (330)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT---CTTCS-STTSBSH-HHHBCCCS----------EETT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC---cccCC-CCccccC-cccccchh----------hhcc
Confidence 47999999999999999999999999999999999999987 57996 5778888 88887211 2233
Q ss_pred HHHh-cccCCCCCC---CCCcEEEEEeccCCCCCCceeecchhhhh------hcCCCEEEEeccccccccccccchhHHH
Q 009137 226 NMLE-NRMINTSTE---LLPSCLYLYLSHDYDHHDKLFFCDQEQAI------LRNIPWLIMKANIYFLPSLFLMSSFEEE 295 (542)
Q Consensus 226 ~ml~-n~~~~~~~~---~~p~~~yl~L~~~~~~~D~~FfCd~~Q~~------L~kvpWLi~~Sd~YFvP~LFl~P~f~~e 295 (542)
+++. ++.++...- ..|+ +|.++.. +.++|++.|-+ ..-+.|....++.|++|++++.+.|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~ 139 (330)
T 2hhc_A 67 VPVICDDRVNQLSFPGPFFPR-WWNRPSI------DCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEE 139 (330)
T ss_dssp EEEECSGGGGTCCCCSSEESG-GGGSCGG------GGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHH
T ss_pred cceecccccccccCCCCcCch-hhhcccc------ccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhh
Confidence 3322 111211110 1122 2322211 36888877553 2224454444568999999999988887
Q ss_pred HHhhCCCccchhhhccccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCCCch--------hHHHHHHHHHHhh
Q 009137 296 LSKLFPDKEMVFHHLGRYLFHPSNQVWKLITSYYKKYLAKAEERIGIQIRIFDNKTSPV--------EHVMDQILTCTDK 367 (542)
Q Consensus 296 L~~lFP~kd~vFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~~~~--------~~v~~qIl~Ct~~ 367 (542)
. ++.+| ||| +|++.+|+.|++|+++++++ +..||||||..+...... ...++++.+|+.+
T Consensus 140 ~------~~~i~----~yl-~p~~~i~~~i~~~~~~~~~~-~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~ 207 (330)
T 2hhc_A 140 A------ERLIF----RNI-KLRSEIRARIDALYEEHFSG-HSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRK 207 (330)
T ss_dssp H------HHHHH----HHS-CBCHHHHHHHHHHHHHHTTT-SEEEEEEECC------------CHHHHHHHHHHHHHHHH
T ss_pred h------HHHHH----hcC-CccHHHHHHHHHHHHHhccC-CceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHH
Confidence 3 33344 998 99999999999999999885 689999999998543221 1237899999998
Q ss_pred ccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEe-cCCchhhhcccchhhhHHHHHHH
Q 009137 368 EKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVY-QPSHEEEQQSENNVHNQKAWAEI 446 (542)
Q Consensus 368 e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~-qPShEe~Q~~~~~~h~~kAlaEm 446 (542)
.+.+++. +.++|||+|+.+++.+++|++|++..+.+++.+... ++.|.. ..+..+.++|++||
T Consensus 208 ~~~~~~~-------------~~~~vfvaSDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~Dm 271 (330)
T 2hhc_A 208 AKALSYP-------------KPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHSA---EMGIEGGASALIDM 271 (330)
T ss_dssp HHTSCCS-------------SCEEEEEEESCHHHHHHHHHHSTTEECCCC-----------CH---HHHHHHHHHHHHHH
T ss_pred HHhccCc-------------CceEEEEEeCCHHHHHHHHHHcCCcccccceeecccccccccC---chhhccchHHHHHH
Confidence 8777642 357999999999999999999998666555432111 222221 12345789999999
Q ss_pred HHhhcCCcee-ecCCCchhHHHhhhcCC
Q 009137 447 NLLSMMDVLV-TSAWSTFGYVAQGLGGK 473 (542)
Q Consensus 447 yLLS~sD~LV-tS~~STFGYVAqgLgGl 473 (542)
||||.||.+| |+++||||++|+-|+.-
T Consensus 272 ~LLS~cd~~I~~~~~STFs~~aa~l~~~ 299 (330)
T 2hhc_A 272 YLLARCATVIRFPPTSAFTRYARLLVPR 299 (330)
T ss_dssp HHHTTCSEEEEESTTCGGGHHHHHHCSE
T ss_pred HHHHcCCeeEECCCCCCHHHHHHHhCCc
Confidence 9999999999 98999999999977643
No 2
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=99.58 E-value=4.6e-14 Score=152.90 Aligned_cols=316 Identities=16% Similarity=0.177 Sum_probs=173.3
Q ss_pred CceEEEEc--ccCCcchhHHHHHHHHHHHHHhCceeeecCCCCcCCCccCCCCCCcccCCCCCCCcccccccCCCchhhH
Q 009137 147 NCRYVVWL--ANCGLGNRILSMTSAFLYALLTDRVLLINEESDMSNMFCEPFPDASWILPEDFPFMNQLYSFGRDYAQSF 224 (542)
Q Consensus 147 ~CkYlVw~--~~~GLGNRmLslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~sy 224 (542)
.+||||.. ...|+|++|-.++.+|.||+.|+|+|+||+++- . ++ +| .|. ..|..+......
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~w-~--Y~---~g-~w~--------~yF~P~s~~C~~-- 206 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNW-R--YA---TG-GWE--------TVFRPVSETCTD-- 206 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTTC-S--SC---TT-CGG--------GTBCCSCSSCCC--
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCCC-C--cC---CC-CHH--------HhhhCcCccccC--
Confidence 46799985 479999999999999999999999999998641 1 11 01 221 001111100000
Q ss_pred HHHHhcccCCCCCCCCCcEEEEEeccCCCCCCceeecchhhhhhcCCCEEEEe--cccccccccc--ccchh-HHHHHhh
Q 009137 225 GNMLENRMINTSTELLPSCLYLYLSHDYDHHDKLFFCDQEQAILRNIPWLIMK--ANIYFLPSLF--LMSSF-EEELSKL 299 (542)
Q Consensus 225 g~ml~n~~~~~~~~~~p~~~yl~L~~~~~~~D~~FfCd~~Q~~L~kvpWLi~~--Sd~YFvP~LF--l~P~f-~~eL~~l 299 (542)
. .+ .....|...- .-.+.+-+... .+.+-.+.+| .+|.. -+.|.++
T Consensus 207 -~---~~------------------------~~~~~w~~~~-~~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l 257 (526)
T 2de0_X 207 -R---SG------------------------ISTGHWSGEV-KDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV 257 (526)
T ss_dssp -C---CC------------------------SCCCBCCCTT-GGGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHH
T ss_pred -C---Cc------------------------cccCCCCCcc-cCCCcceEEeeccccccccccccccccchhHHHHHHhc
Confidence 0 00 0000111000 00000001000 0112223333 44543 3444444
Q ss_pred CCCcc--chhhhccccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEecCCC-----CchhHHHHHH---HHHHhhcc
Q 009137 300 FPDKE--MVFHHLGRYLFHPSNQVWKLITSYYKKYLAKAEERIGIQIRIFDNKT-----SPVEHVMDQI---LTCTDKEK 369 (542)
Q Consensus 300 FP~kd--~vFhhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf~~~~-----~~~~~v~~qI---l~Ct~~e~ 369 (542)
- ..+ -.+.++.||||.|++.+...|.+++... .-.+.-||||||..+..+ .+.++.++.+ +....++
T Consensus 258 ~-~dp~~w~~~q~~~yl~rP~~~i~~~I~~~~~~l-~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~- 334 (526)
T 2de0_X 258 H-GDPAVWWVSQFVKYLIRPQPWLEKEIEEATKKL-GFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARR- 334 (526)
T ss_dssp C-SCHHHHHHHHHHHHHTCBCHHHHHHHHHHHHHH-TCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTT-
T ss_pred c-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhh-
Confidence 2 222 2478899999999999999999999884 224568999999987621 3445555433 2222221
Q ss_pred CCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHHHh
Q 009137 370 LLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEINLL 449 (542)
Q Consensus 370 lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmyLL 449 (542)
...+.+.|||+|+.++.++.++++|.+..-. ++.. ++ -+.....+... ..-..+++|||||
T Consensus 335 ---------------~~~~~~~ifLATDDp~v~~e~k~~~p~~~~~-~d~~-~~-~~a~~~~R~s~-~~l~~~l~DL~lL 395 (526)
T 2de0_X 335 ---------------MQVDKKRVYLATDDPSLLKEAKTKYPNYEFI-SDNS-IS-WSAGLHNRYTE-NSLRGVILDIHFL 395 (526)
T ss_dssp ---------------SCCSSCEEEEEESCHHHHHHHHHHCTTSEEE-CCCC-SS-CSSGGGGGTCC-THHHHHHHHHHHH
T ss_pred ---------------cCCCCCeEEEEcCCHHHHHHHHHhCCCCEEe-cCcc-cc-cccCccccccH-HHHHHHHHHHHHH
Confidence 1234569999999999999999988765211 1111 11 11111122211 1236899999999
Q ss_pred hcCCceeecCCCchhHHHhhhcCCCceEEeecCCCCCCCCCcccCCCCCCCCCCCCccccCcCcC----CCcccccCccc
Q 009137 450 SMMDVLVTSAWSTFGYVAQGLGGKKPWILYKIENKTIPDPVCGRAKSLEPCFHAPPVYDCKAKRE----VDTATIIPYLR 525 (542)
Q Consensus 450 S~sD~LVtS~~STFGYVAqgLgGl~PwiL~~p~~~~~~~ppC~r~~S~EPCfh~pp~ydC~~k~~----~d~~~~vp~vr 525 (542)
|-||.+|.|..|||+.+|..+.|-..-.- .....+..+.....+++.+.| . .-|+-.+... -..|.++--+.
T Consensus 396 s~cd~~Vgt~sS~~srla~~l~~~~~~~~-~~~~~SLD~~~~~~Gq~~~~~--~-aly~y~a~~~dELs~~~GD~i~v~~ 471 (526)
T 2de0_X 396 SQADFLVCTFSSQVCRVAYEIMQTLHPDA-SANFHSLDDIYYFGGQNAHNQ--I-AIYAHQPRTADEIPMEPGDIIGVAG 471 (526)
T ss_dssp HHSSEEEECTTSHHHHHHHHHHTTSSSCC-TTCEEESSCCSCCTTCCCCEE--E-ECSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred hcCCeeecCCCCHHHHHHHHHhcCcCccc-cccccCCccccccccccccce--E-EeecCCCCCCCcCCcCCCCEEEEcc
Confidence 99999999999999999999887654110 000011123333344433222 1 1244433321 23555555567
Q ss_pred ccCCccc-Ce
Q 009137 526 HCEDIYW-GI 534 (542)
Q Consensus 526 ~CeD~~~-Gl 534 (542)
.|+|-+| |-
T Consensus 472 ~~~~gW~~G~ 481 (526)
T 2de0_X 472 NHWDGYSKGV 481 (526)
T ss_dssp ECSSSEEEEE
T ss_pred ccCCCeeEEE
Confidence 7887776 65
No 3
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=97.73 E-value=7.5e-05 Score=77.62 Aligned_cols=138 Identities=15% Similarity=0.209 Sum_probs=88.3
Q ss_pred hhccccccCCchhHHHHHHHHHHHhhhcccceeeEEEEEe-cCC-------CCchhHHHHHHHHHH--hhccC-------
Q 009137 308 HHLGRYLFHPSNQVWKLITSYYKKYLAKAEERIGIQIRIF-DNK-------TSPVEHVMDQILTCT--DKEKL------- 370 (542)
Q Consensus 308 hhL~RYLfhPsN~VW~~Vtrfy~ayLa~A~~rIGIQIRvf-~~~-------~~~~~~v~~qIl~Ct--~~e~l------- 370 (542)
.+|.|| +..++++-...++|-+++|.+ .=|||++|.. +++ .+..++.+.+ -+|. ..++.
T Consensus 185 r~LqkY-m~WS~~i~~~a~~fI~~~L~r--pyVgIHLR~G~DW~~aC~hlk~~~~~~lfaS-PQC~Gy~~~~~~lt~emC 260 (362)
T 3zy2_A 185 WSIQKY-LRWSSRITEQAKKFISANLAK--PFVAVHLRNDADWVRVCEHIDTTTNRPLFAS-EQCLGEGHHLGTLTKEIC 260 (362)
T ss_dssp GGGGGG-CCBCHHHHHHHHHHHHHHCCS--SEEEEEECCCHHHHHHHHTCCTTTCCCCTTT-HHHHCGGGTTCCCCHHHH
T ss_pred HhHHHh-ccccHHHHHHHHHHHHHhcCC--CeEEEEEecCCcHHHHHhhhccccCcccccC-CcccCCcccCcccchhcc
Confidence 578888 789999999999999999986 5899999985 211 0000011110 1243 11111
Q ss_pred CCCcCCCCccc-CCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEE-ecCCchhhhcccchhhhHHHHHHHHH
Q 009137 371 LPRVDMGKSIV-APSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAV-YQPSHEEEQQSENNVHNQKAWAEINL 448 (542)
Q Consensus 371 LP~v~~~~~~~-~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V-~qPShEe~Q~~~~~~h~~kAlaEmyL 448 (542)
+|.++...... ...+..+.++|+|+|+...+.++|++.+.... +..| ++|. .|.+|||+
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIATDa~~~~~ELk~~L~~~~-----v~vv~~~pe--------------~a~ID~~I 321 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYE-----IEAHRQEPD--------------DMYTSLAI 321 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEESSCCCHHHHHHHHGGGT-----CCEECCSSC--------------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHhhccC-----ceEEEeCCc--------------hhHHHHHH
Confidence 23221100000 00112246799999999999999999885421 1112 2222 78999999
Q ss_pred hhcCCceeecCCCchhHHHh
Q 009137 449 LSMMDVLVTSAWSTFGYVAQ 468 (542)
Q Consensus 449 LS~sD~LVtS~~STFGYVAq 468 (542)
|+.+|+.|-+.+|||.+-.+
T Consensus 322 ~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 322 MGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp HHHSSEEEECTTCHHHHHHH
T ss_pred HHhCCEeecCccccccHHHH
Confidence 99999999999999998653
No 4
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=97.07 E-value=0.028 Score=58.36 Aligned_cols=120 Identities=13% Similarity=0.242 Sum_probs=77.5
Q ss_pred chhHHHHHHHHHHHhhhccc------------------------ceeeEEEEEecCCCC------chhHHHHHHHHHHhh
Q 009137 318 SNQVWKLITSYYKKYLAKAE------------------------ERIGIQIRIFDNKTS------PVEHVMDQILTCTDK 367 (542)
Q Consensus 318 sN~VW~~Vtrfy~ayLa~A~------------------------~rIGIQIRvf~~~~~------~~~~v~~qIl~Ct~~ 367 (542)
++.+-....+|-+.+|..++ .=+++++|.-+.... +.+.+.++|..-..+
T Consensus 222 s~~l~~~a~~fi~~~L~~~~~~~h~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~ 301 (408)
T 4ap5_A 222 ARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKT 301 (408)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTTTTCCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccceeecccchhHhhhhcccccccCCCccccccccccchhhhhccCCCHHHHHHHHHHHHHh
Confidence 45555666777777775321 237888887553311 234445555444333
Q ss_pred ccCCCCcCCCCcccCCCCCCcceEEEEEeccHHH-HHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHH
Q 009137 368 EKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYY-YEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEI 446 (542)
Q Consensus 368 e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y-~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEm 446 (542)
. +.+.|+|||+.... .+.|++.... +..+.|..++....++ +.-|++|+
T Consensus 302 ~-------------------~~~~VyiATD~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~d---~~~a~idq 351 (408)
T 4ap5_A 302 H-------------------RLDKVFVATDAVRKEYEELKKLLPE--------MVRFEPTWEELELYKD---GGVAIIDQ 351 (408)
T ss_dssp H-------------------TCSCEEEEECCCHHHHHHHHHHCTT--------EECCCCCHHHHHHHHH---HHHHHHHH
T ss_pred c-------------------CCCEEEEeCCCchhHHHHHHHhCCC--------cEEecCcchhhhccCc---chhhHHHH
Confidence 2 23489999995543 6788887643 3445666665544433 24599999
Q ss_pred HHhhcCCceeecCCCchhHHH
Q 009137 447 NLLSMMDVLVTSAWSTFGYVA 467 (542)
Q Consensus 447 yLLS~sD~LVtS~~STFGYVA 467 (542)
++++.+|+.|-|..|||-.--
T Consensus 352 ~Ic~~a~~FiGt~~StfS~~I 372 (408)
T 4ap5_A 352 WICAHARFFIGTSVSTFSFRI 372 (408)
T ss_dssp HHHHTEEEEEBCTTCHHHHHH
T ss_pred HHHHhCCeeEeCCcCchhHHH
Confidence 999999999999999997653
No 5
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.42 E-value=1.7e+02 Score=23.12 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=43.1
Q ss_pred CcceEEEEEeccHHH-HHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHH
Q 009137 387 GKSKAVLITSLVPYY-YEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEI 446 (542)
Q Consensus 387 ~k~kaVlVtSL~~~y-~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEm 446 (542)
...+.|+|..|.... -+.|++.|..... |++..|..+.+-..=.|.+....++|+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKAL 71 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHh
Confidence 345799999997643 4668888877643 788888877666666677777788888876
No 6
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=21.60 E-value=2.6e+02 Score=26.77 Aligned_cols=122 Identities=12% Similarity=0.033 Sum_probs=71.3
Q ss_pred EecCCCCchhHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecC
Q 009137 346 IFDNKTSPVEHVMDQILTCTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQP 425 (542)
Q Consensus 346 vf~~~~~~~~~v~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qP 425 (542)
+++.++.-.++.-+.|+..+.+-+--|+..... ...+..+.++|++.++...|+..+.+-..+.....|=.+.+..
T Consensus 30 ~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~---l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~- 105 (344)
T 3kjx_A 30 VLRNRGDVSDATRARVLAAAKELGYVPNKIAGA---LASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV- 105 (344)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSC---STTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE-
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHH---hhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe-
Confidence 344443333566778999898888888653221 1234456789999888776776666555444444564454543
Q ss_pred CchhhhcccchhhhHHHHHHHHHhhcCCceeecCCCch-hHHHhhh-cCCCceEEe
Q 009137 426 SHEEEQQSENNVHNQKAWAEINLLSMMDVLVTSAWSTF-GYVAQGL-GGKKPWILY 479 (542)
Q Consensus 426 ShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STF-GYVAqgL-gGl~PwiL~ 479 (542)
++.. ...+....+..+-.-.|.+|..+...- -.+..-. .|+ |.|+.
T Consensus 106 ~~~~-------~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~i-PvV~i 153 (344)
T 3kjx_A 106 TDYL-------PEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAGI-PVVEI 153 (344)
T ss_dssp CTTC-------HHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCSS-CEEEE
T ss_pred CCCC-------HHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCCC-CEEEE
Confidence 2221 123455666666678899998765422 2332222 344 88876
No 7
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=20.45 E-value=1.9e+02 Score=25.28 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=36.8
Q ss_pred CCcceEEEEE-------eccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHH
Q 009137 386 KGKSKAVLIT-------SLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEI 446 (542)
Q Consensus 386 ~~k~kaVlVt-------SL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEm 446 (542)
|....||-++ +|..++-++|...+....|.+|++|-. +.++..|..++...++-|.++
T Consensus 38 NKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~---~q~~RSQ~~Nr~~Al~rL~~~ 102 (112)
T 1j26_A 38 NKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLT---SESSRYQFRNLAECLQKIRDM 102 (112)
T ss_dssp SSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEE---ECCCSSHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEE---ECCccCHHHHHHHHHHHHHHH
Confidence 3345566664 678899999999999999999966544 333333333333344445544
No 8
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Probab=17.61 E-value=1.4e+02 Score=25.36 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCCEEEEe-ccccccccccccchhHHHHHhhCCCccch-hhhccccccCCc--hhHHHHHHHHHHHhhh
Q 009137 270 NIPWLIMK-ANIYFLPSLFLMSSFEEELSKLFPDKEMV-FHHLGRYLFHPS--NQVWKLITSYYKKYLA 334 (542)
Q Consensus 270 kvpWLi~~-Sd~YFvP~LFl~P~f~~eL~~lFP~kd~v-FhhL~RYLfhPs--N~VW~~Vtrfy~ayLa 334 (542)
++|-+++. .++.++| +...+.+.++.++.+.+ +...++.+..|. ++++..|.+|.+.+|+
T Consensus 160 ~~P~l~i~g~~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 160 KAPTLLIVGGYDLPVI-----AMNEDALEQLQTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp CSCEEEEEETTCHHHH-----HHHHHHHHHCCSSEEEEEETTCCTTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEccccCCCC-----HHHHHHHHhhCCCeEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcC
Confidence 36766666 3455555 45567777777776533 444667766664 7899999999988763
No 9
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Probab=16.49 E-value=1.9e+02 Score=25.88 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCCEEEEe-ccccccccccccchhHHHHHhhCCCccch-hhhccccccCCc-hhHHHHHHHHHHHhhhc
Q 009137 270 NIPWLIMK-ANIYFLPSLFLMSSFEEELSKLFPDKEMV-FHHLGRYLFHPS-NQVWKLITSYYKKYLAK 335 (542)
Q Consensus 270 kvpWLi~~-Sd~YFvP~LFl~P~f~~eL~~lFP~kd~v-FhhL~RYLfhPs-N~VW~~Vtrfy~ayLa~ 335 (542)
++|-|++. .++-++| +...+++.+.+|+.+.+ +..-++.+ ... ++++..|.+|.+.+|++
T Consensus 189 ~~P~lii~G~~D~~v~-----~~~~~~~~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~i~~fl~~~~~~ 251 (251)
T 2wtm_A 189 TKPVLIVHGDQDEAVP-----YEASVAFSKQYKNCKLVTIPGDTHCY-DHHLELVTEAVKEFMLEQIAK 251 (251)
T ss_dssp CSCEEEEEETTCSSSC-----HHHHHHHHHHSSSEEEEEETTCCTTC-TTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEeCCCCCcC-----hHHHHHHHHhCCCcEEEEECCCCccc-chhHHHHHHHHHHHHHHhccC
Confidence 57888887 4566665 45566777788877643 55667776 333 46899999999988864
No 10
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=13.76 E-value=2.5e+02 Score=26.76 Aligned_cols=114 Identities=7% Similarity=0.163 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEEe--ccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhc
Q 009137 355 EHVMDQILTCTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITS--LVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQ 432 (542)
Q Consensus 355 ~~v~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtS--L~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~ 432 (542)
++.-+.|++.+.+-+--|+..... ...+..+.++|++.+ ....|+..+.+-..+.....|-.+.++. ++..
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~a~~---l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~--- 104 (338)
T 3dbi_A 32 QETKDRVFQAVEESGYRPNLLARN---LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHS--- 104 (338)
T ss_dssp -------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTS---
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHH---hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCC---
Confidence 344456666666666666542211 123445678899888 7777777766655554444564455544 2221
Q ss_pred ccchhhhHHHHHHHHHhhcCCceeecCCC-chhHHHhhh--cCCCceEEee
Q 009137 433 SENNVHNQKAWAEINLLSMMDVLVTSAWS-TFGYVAQGL--GGKKPWILYK 480 (542)
Q Consensus 433 ~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-TFGYVAqgL--gGl~PwiL~~ 480 (542)
...+....+..+-.-.|.+|..+.. +---+..-+ .| .|.|+..
T Consensus 105 ----~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-iPvV~~~ 150 (338)
T 3dbi_A 105 ----AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHS-QPIMVLN 150 (338)
T ss_dssp ----HHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCS-SCEEEES
T ss_pred ----hHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCC-CCEEEEc
Confidence 1234556677777789999987754 222222222 24 4888754
Done!