Query 009137
Match_columns 542
No_of_seqs 137 out of 164
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 19:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009137.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009137hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bz2a1 d.58.7.1 (A:35-113) Ne 27.9 43 0.0031 24.3 5.1 64 387-453 3-66 (79)
2 d1tjya_ c.93.1.1 (A:) AI-2 rec 25.7 29 0.0021 29.9 4.4 72 386-464 2-73 (316)
3 d2cpda1 d.58.7.1 (A:223-308) A 22.7 53 0.0039 24.0 4.8 58 388-447 7-65 (86)
4 d1prtb2 d.169.1.2 (B:4-89) Per 21.4 5.8 0.00042 30.9 -1.2 19 455-473 44-67 (86)
5 d1prtc2 d.169.1.2 (C:4-89) Per 19.2 5.8 0.00042 30.9 -1.7 19 455-473 44-67 (86)
6 d1wwha1 d.58.7.1 (A:169-249) N 17.9 80 0.0058 23.4 4.9 51 390-444 5-57 (81)
7 d1f8ya_ c.23.14.1 (A:) Nucleos 16.3 62 0.0045 27.1 4.3 91 390-482 3-114 (156)
8 d1ihua1 c.37.1.10 (A:1-296) Ar 15.7 64 0.0046 27.9 4.4 39 147-185 7-45 (296)
9 d1zcha1 d.90.1.1 (A:1-249) Hyp 14.1 93 0.0068 27.4 5.1 54 344-412 14-67 (249)
10 d2nzug1 c.93.1.1 (G:58-332) Gl 13.9 1.2E+02 0.0087 25.5 5.7 86 386-479 2-88 (275)
No 1
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.90 E-value=43 Score=24.34 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=42.5
Q ss_pred CcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHHHhhcCC
Q 009137 387 GKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEINLLSMMD 453 (542)
Q Consensus 387 ~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD 453 (542)
.+.+.|+|..+. -=-|.|++.|.+...+.. +.+..+.+-..=.+.+.....+|+.+|-=..+.+
T Consensus 3 ~~~~ti~V~~~~-~te~~L~~~F~~~G~I~~--v~~~~~~~~afV~f~~~~~A~~Ai~~lng~~~~g 66 (79)
T d2bz2a1 3 RKGNTLYVYGED-MTPTLLRGAFSPFGNIID--LSMDPPRNCAFVTYEKMESADQAVAELNGTQVES 66 (79)
T ss_dssp CCCCEEEEECSS-CCHHHHHHHHSTTCCCSC--EEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEECCC-CCHHHHHHHHhccCccce--eeeccCCCEEEEEEcccHHHHHHHHHhCCCEECC
Confidence 445689999985 457899999988754433 3444444445556677777888988875433333
No 2
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=25.66 E-value=29 Score=29.89 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=50.8
Q ss_pred CCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHHHhhcCCceeecCCCchh
Q 009137 386 KGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEINLLSMMDVLVTSAWSTFG 464 (542)
Q Consensus 386 ~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFG 464 (542)
+.+.+++++.++.-.|+..+.+--.+.....|=-+.+..|+... ...|.+..|..+-.-.|.+|+++.++=+
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d-------~~~q~~~i~~~i~~~~dgIIi~~~~~~~ 73 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPS-------VSGQVQLVNNFVNQGYDAIIVSAVSPDG 73 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCC-------HHHHHHHHHHHHHTTCSEEEECCSSSST
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-------HHHHHHHHHHHHhcCCCeeeecccccch
Confidence 45678999999988999888777666665566334444465432 2236777888888899999998876533
No 3
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.69 E-value=53 Score=23.99 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=44.9
Q ss_pred cceEEEEEeccH-HHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHH
Q 009137 388 KSKAVLITSLVP-YYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEIN 447 (542)
Q Consensus 388 k~kaVlVtSL~~-~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmy 447 (542)
+.+.|+|..|.. .--+.|+++|.+... ++.+.+..+.+-.+=.+.+..+.++|+..|-
T Consensus 7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~--i~~~~~~~~rg~afV~f~~~~~A~~Ai~~l~ 65 (86)
T d2cpda1 7 SVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALN 65 (86)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHhhcccce--eeeEEEccccEEEEEEeCCHHHHHHHHHHcC
Confidence 346899999987 445688999877653 4678888888888888888888899988773
No 4
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=21.38 E-value=5.8 Score=30.87 Aligned_cols=19 Identities=42% Similarity=0.831 Sum_probs=16.8
Q ss_pred eeecCCCchh-----HHHhhhcCC
Q 009137 455 LVTSAWSTFG-----YVAQGLGGK 473 (542)
Q Consensus 455 LVtS~~STFG-----YVAqgLgGl 473 (542)
-||-+||-|| |++|.+||+
T Consensus 44 ~it~gwsi~~lydgtylg~~yggi 67 (86)
T d1prtb2 44 HVTRGWSIFALYDGTYLGGEYGGV 67 (86)
T ss_dssp TTCCSSCEEECSSEEEECGGGCSE
T ss_pred hcCCCceEEEEeccceeccccCce
Confidence 3799999998 789999997
No 5
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=19.18 E-value=5.8 Score=30.87 Aligned_cols=19 Identities=42% Similarity=0.996 Sum_probs=16.6
Q ss_pred eeecCCCchh-----HHHhhhcCC
Q 009137 455 LVTSAWSTFG-----YVAQGLGGK 473 (542)
Q Consensus 455 LVtS~~STFG-----YVAqgLgGl 473 (542)
-||-+||-|| |++|.+||+
T Consensus 44 ~it~gwsi~~lydgtylg~~yggi 67 (86)
T d1prtc2 44 QITPGWSIYGLYDGTYLGQAYGGI 67 (86)
T ss_dssp HHCCTTCEEECSSSEEECTTTTSE
T ss_pred hcCCCceEEEEeccceeccccCce
Confidence 3699999998 789999996
No 6
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.89 E-value=80 Score=23.43 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=39.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCch--hhhcccchhhhHHHHH
Q 009137 390 KAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHE--EEQQSENNVHNQKAWA 444 (542)
Q Consensus 390 kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShE--e~Q~~~~~~h~~kAla 444 (542)
..|+|..+.++-.|.+.+.|.+. |+++.+.-+... .+=.|.+....++||.
T Consensus 5 ~wV~V~G~p~~~~~~il~~F~~~----G~I~~~~~~~~~~~~fV~f~~~~~A~~Al~ 57 (81)
T d1wwha1 5 TWVTVFGFPQASASYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKALS 57 (81)
T ss_dssp GEEEEECCCGGGHHHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHHT
T ss_pred cEEEEECCChHHHHHHHHHHHhh----hhhheEEecCCCCEEEEEEcccHHHHHHHh
Confidence 57999999998888888888765 778888766543 4555778888888873
No 7
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}
Probab=16.26 E-value=62 Score=27.14 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=59.3
Q ss_pred eEEEEEec-----cHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcc----------cchhhhHHHHHHHHHhhcCCc
Q 009137 390 KAVLITSL-----VPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQS----------ENNVHNQKAWAEINLLSMMDV 454 (542)
Q Consensus 390 kaVlVtSL-----~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~----------~~~~h~~kAlaEmyLLS~sD~ 454 (542)
|.|.+|+= ..++.+++++..-++++..|+ .||.|-....... ......+-.-+|+-.+.-||+
T Consensus 3 k~IYlAgP~F~~~q~~~~~~~~~~L~~~~~~~~~--~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD~ 80 (156)
T d1f8ya_ 3 KTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLE--NSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDI 80 (156)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHCTTBCCT--TSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHhccccCCc--eEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence 57888874 368899999999998888774 3566643211110 111122344578999999999
Q ss_pred eee--cC----CCchhHHHhhhcCCCceEEeecC
Q 009137 455 LVT--SA----WSTFGYVAQGLGGKKPWILYKIE 482 (542)
Q Consensus 455 LVt--S~----~STFGYVAqgLgGl~PwiL~~p~ 482 (542)
+|. .+ +-|--=+|-+.|==||.|++...
T Consensus 81 via~ldg~~~D~Gta~EiG~A~a~gKpvi~~~~~ 114 (156)
T d1f8ya_ 81 MLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPD 114 (156)
T ss_dssp EEEECCGGGCCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Confidence 875 33 34544566677777999998664
No 8
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=15.71 E-value=64 Score=27.94 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=34.3
Q ss_pred CceEEEEcccCCcchhHHHHHHHHHHHHHhCceeeecCC
Q 009137 147 NCRYVVWLANCGLGNRILSMTSAFLYALLTDRVLLINEE 185 (542)
Q Consensus 147 ~CkYlVw~~~~GLGNRmLslaSaFLYALLT~RVLLVd~~ 185 (542)
.-||+++..=.|-|==-+|.+-|..+|-.=.||||||-.
T Consensus 7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D 45 (296)
T d1ihua1 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (296)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 368999888899999999999999999988999999853
No 9
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}
Probab=14.12 E-value=93 Score=27.38 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=36.1
Q ss_pred EEEecCCCCchhHHHHHHHHHHhhccCCCCcCCCCcccCCCCCCcceEEEEEeccHHHHHHHHHHhcCC
Q 009137 344 IRIFDNKTSPVEHVMDQILTCTDKEKLLPRVDMGKSIVAPSGKGKSKAVLITSLVPYYYEKMMNMYSKH 412 (542)
Q Consensus 344 IRvf~~~~~~~~~v~~qIl~Ct~~e~lLP~v~~~~~~~~~~~~~k~kaVlVtSL~~~y~e~lr~~Y~~~ 412 (542)
||-|..++++ ++.+++|+.|++. ++++.+.+.-.++|.++ ++--++|.....+.
T Consensus 14 iR~F~~~pV~-~e~i~~il~aA~~-------------APS~~N~Qpw~~ivV~d-~e~~~~l~~~~~~~ 67 (249)
T d1zcha1 14 IRSYTDEPVA-QEQLDQIIEAVQS-------------APSSINGQQVTVITVQD-KERKKKISELAGGQ 67 (249)
T ss_dssp CCCBCSCCCC-HHHHHHHHHHHHH-------------SCCGGGCCCEEEEEECC-HHHHHHHHHHTTCC
T ss_pred cccCCCCCCC-HHHHHHHHHHHHh-------------CcCcccCCCeEEEEEec-chHHHHHHHHhccC
Confidence 6889888776 7889999999865 22334445555555543 67777787765443
No 10
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=13.87 E-value=1.2e+02 Score=25.50 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=53.2
Q ss_pred CCcceEEEEEeccHHHHHHHHHHhcCCCcCCccEEEEecCCchhhhcccchhhhHHHHHHHHHhhcCCceeecCCCchhH
Q 009137 386 KGKSKAVLITSLVPYYYEKMMNMYSKHPTLNGEVVAVYQPSHEEEQQSENNVHNQKAWAEINLLSMMDVLVTSAWSTFGY 465 (542)
Q Consensus 386 ~~k~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShEe~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGY 465 (542)
+.+.++|+|.++...||..+-+-..+.....|=.+.++. +.+ ....+++..|..+-.-.|.+|..+...-..
T Consensus 2 kt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~-------~~~~e~~~i~~~~~~~vdgii~~~~~~~~~ 73 (275)
T d2nzug1 2 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN-SDQ-------NQDKELHLLNNMLGKQVDGIIFMSGNVTEE 73 (275)
T ss_dssp CCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CTT-------CHHHHHHHHHHHHTTCCSEEEECCSCCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE-CCC-------CHHHHHHHHHHHHhcCCceeeccccchhhH
Confidence 457899999998877777666555544444553343332 222 123467778888888899999888655444
Q ss_pred HHh-hhcCCCceEEe
Q 009137 466 VAQ-GLGGKKPWILY 479 (542)
Q Consensus 466 VAq-gLgGl~PwiL~ 479 (542)
... -...-.|.++.
T Consensus 74 ~~~~l~~~~~pvv~~ 88 (275)
T d2nzug1 74 HVEELKKSPVPVVLA 88 (275)
T ss_dssp HHHHHHHCSSCEEEE
T ss_pred HHHHHhhcccccccc
Confidence 433 23333466654
Done!