BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009138
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/470 (53%), Positives = 325/470 (69%), Gaps = 17/470 (3%)
Query: 73 SGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGL 132
SGV G +++Y + S+ GY L R+PH NK LAF+ +ER + GL
Sbjct: 9 SGVDLGTENLYFQ--------------SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGL 54
Query: 133 LPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYT 192
LPP+ SQE+QV +++ N +Y+ +MDLQ+RN+KLFY++L ++E+ +PIVYT
Sbjct: 55 LPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYT 114
Query: 193 PTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG 252
PTVG ACQ+Y ++ +P+G+FI++ D+G + VL WPE I+ IVVTDGERILGLGDLG
Sbjct: 115 PTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLG 174
Query: 253 CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAE 312
C+GMGIPVGKL+LYTA GG+ P CLPV +DVGT NE+LL D YIGLRQ+R G EY +
Sbjct: 175 CNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDD 234
Query: 313 LLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLIS 372
L EFM AV YG LIQFEDFAN NAF LL KY + FNDDIQGTASV +AGL++
Sbjct: 235 FLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLA 294
Query: 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432
A++ L+DQ LF GAGEA GIA LI + + K+ +P E+ KKIWLVDSKGLIV
Sbjct: 295 ALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVK 353
Query: 433 SRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKP 492
R SL K+ +AHEHE +K L V IKPT LIG + G F++++++ MA+ NE+P
Sbjct: 354 GR-ASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERP 412
Query: 493 IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQ 541
IIF+LSNPTS++EC+AE+ Y ++GRAIFASGSPFDP + PGQ
Sbjct: 413 IIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQ 462
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/439 (54%), Positives = 302/439 (68%), Gaps = 3/439 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
GY +LRDPH NKG AF+ +ER + GLLPP + Q+ QV +L N + L +Y+
Sbjct: 3 GYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ LQ+RN+KLFYK+L ++E PIVYTPTVG ACQ YG + RP+G+FI++ D+G +
Sbjct: 63 LXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
L++WPE I+ IVVTDGERILGLGDLGC+G GIPVGKL+LYTA GG++P CLPV +D
Sbjct: 123 TXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLD 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+NE LL D YIGLR KR GQ Y +LL EF AV YG LIQFEDFAN NAF
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFR 242
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
LL KY + FNDDIQGTASV +AGL++A++ L+D LF GAGEA GIA LI
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463
K+ + EE K+IW VDSKGLIV R SL K+ +AHEH K L D V IK
Sbjct: 303 XAXQKE-GVSKEEAIKRIWXVDSKGLIVKGR-ASLTPEKEHFAHEHCEXKNLEDIVKDIK 360
Query: 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 523
PT+LIG + G FT+++++ A+ N++PIIF+LSNPTS++ECTAE+ Y +++GR IFAS
Sbjct: 361 PTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS 420
Query: 524 GSPFDPFEY-GDNVFVPGQ 541
GSPFDP PGQ
Sbjct: 421 GSPFDPVTLPSGQTLYPGQ 439
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/441 (53%), Positives = 318/441 (72%), Gaps = 4/441 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L+ +P NKG+AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 6 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIY 65
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+M +QERN+KLFY++L D++E L+PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 66 IMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 125
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +GMGIPVGKL LYTA GIRP CLPV ID
Sbjct: 126 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCID 185
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY+GL QKR Q+Y +L+ EFM A+ YG LIQFEDF NHNAF
Sbjct: 186 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFR 245
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 246 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 305
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 461
+ + + + +E +KKIW+ D GL+V R + +++P+ H E + + DAVN
Sbjct: 306 MSMV-ENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 364
Query: 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521
+KP+ +IG +G GR FT +V+ AMAS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 365 LKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 424
Query: 522 ASGSPFDPFEYGD-NVFVPGQ 541
ASGSPF P + D VF PGQ
Sbjct: 425 ASGSPFGPVKLTDGRVFTPGQ 445
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/441 (52%), Positives = 307/441 (69%), Gaps = 4/441 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 325 XS-XVENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 383
Query: 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 384 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 443
Query: 522 ASGSPFDPFEYGD-NVFVPGQ 541
ASGSPF P + D VF PGQ
Sbjct: 444 ASGSPFGPVKLTDGRVFTPGQ 464
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/441 (52%), Positives = 307/441 (69%), Gaps = 4/441 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 325 XS-XVENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 383
Query: 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 384 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 443
Query: 522 ASGSPFDPFEYGD-NVFVPGQ 541
ASGSPF P + D VF PGQ
Sbjct: 444 ASGSPFGPVKLTDGRVFTPGQ 464
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/441 (52%), Positives = 307/441 (69%), Gaps = 4/441 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 5 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 64
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 65 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 124
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 184
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 185 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 244
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 245 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 304
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 305 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 363
Query: 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 364 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 423
Query: 522 ASGSPFDPFEYGD-NVFVPGQ 541
ASGSPF P + D VF PGQ
Sbjct: 424 ASGSPFGPVKLTDGRVFTPGQ 444
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 463 bits (1191), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/441 (52%), Positives = 307/441 (69%), Gaps = 4/441 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 3 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 63 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 123 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQFEDF NHNAF
Sbjct: 183 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 242
Query: 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 243 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 302
Query: 404 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 303 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 361
Query: 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 362 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 421
Query: 522 ASGSPFDPFEYGD-NVFVPGQ 541
ASGSPF P + D VF PGQ
Sbjct: 422 ASGSPFGPVKLTDGRVFTPGQ 442
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/451 (49%), Positives = 315/451 (69%), Gaps = 10/451 (2%)
Query: 94 VTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQ 153
VTP S LL++P NKG+ FS ER L GLLPP ++QE Q +++ +R+
Sbjct: 33 VTPKKRSA----ELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE 88
Query: 154 YQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVF 213
L +Y+ + LQ+RN+KLFY+++ D+V+EL+PIVYTPTVG ACQ +G IY +P+G++
Sbjct: 89 QPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLY 148
Query: 214 ISLKDKG--KVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGG 271
I++ D K+ ++L NW E++++ IVVTDGERILGLGDLG +G+GIPVGKL+LY ALGG
Sbjct: 149 ITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGG 208
Query: 272 IRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI 331
++P CLPV +DVGTNN LL+D FYIGLR KR G++Y LL FM A + YG++ LI
Sbjct: 209 VQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLI 268
Query: 332 QFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391
QFEDFAN NAF LL+KY + +FNDDIQGTASV++AGL++ + ++ +++LF GA
Sbjct: 269 QFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA 328
Query: 392 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAHEHE 450
G A TGIAE+I ++ + + EE +I+L+D GL+ +R E + +H + +A +
Sbjct: 329 GAASTGIAEMIVHQMQNE-GISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ--FAKDMP 385
Query: 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE 510
+++ + A +P LIG S F +EV+ AMA +NE+PIIF+LSNPTS++ECTAEE
Sbjct: 386 ETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEE 445
Query: 511 AYTWSQGRAIFASGSPFDPFEYGDNVFVPGQ 541
AYT++ G A++ASGSPF FE + + PGQ
Sbjct: 446 AYTFTNGAALYASGSPFPNFELNGHTYKPGQ 476
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 138/313 (44%), Gaps = 52/313 (16%)
Query: 238 VVTDGERILGLGDLGC-HGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEF 296
VV+D R+LG GD+ G+G+ GK L LGGI +P+ ID
Sbjct: 95 VVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDA---VPICID------------- 138
Query: 297 YIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLE--KYGTTHLV 354
K G+ + + EF+ ++ +G I ED + N + +L+ + V
Sbjct: 139 -----SKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDIPV 190
Query: 355 FNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPL 414
++DD QGTASV LAGL++A+K + + + R +F+GAG + T LI +
Sbjct: 191 WHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP----- 245
Query: 415 EETRKKIWLVDSKGLIVSSR--LESLQHFKKPW--AHEHEPVKELVDAVNAIKPTILIGT 470
KKI + DSKG + + R ++ F + W P K A + +LI
Sbjct: 246 ----KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISL 301
Query: 471 SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ---SECTAEEAYTWSQGRAIFASGSPF 527
S G K E + S+ EKPI+F +NP + E AY + GR F
Sbjct: 302 STPGPGVVK--AEWIKSMGEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF------ 353
Query: 528 DPFEYGDNVFVPG 540
P + ++V PG
Sbjct: 354 -PNQVNNSVGFPG 365
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 168/377 (44%), Gaps = 80/377 (21%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTH-- 352
F I +++ QE + + + + A+ +G I ED A+ F +LE+
Sbjct: 105 AFPIMIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDI 155
Query: 353 LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM 412
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I + +
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGV 210
Query: 413 PLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAIK 463
E R + LV+ K I++S L+ + F + W E P + L DA
Sbjct: 211 KPENVR-VVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA----- 264
Query: 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 523
+LI + G K + + +NE I+F L+NP E EEA G I A+
Sbjct: 265 -DVLISFTRPGPGVIKP--QWIEKMNEDAIVFPLANPV--PEILPEEAK--KAGARIVAT 317
Query: 524 GSPFDPFEYGDNVFVPG 540
G P + + + PG
Sbjct: 318 GRSDYPNQINNLLGFPG 334
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 166/376 (44%), Gaps = 78/376 (20%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDE 295
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 296 FYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTH--L 353
F I +++ QE + + + + A+ +G I ED A+ F +LE+
Sbjct: 106 FPIXIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 354 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMP 413
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I + +
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGVK 211
Query: 414 LEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAIKP 464
E R + LV+ K I++S L+ + F + W E P + L DA
Sbjct: 212 PENVR-VVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA------ 264
Query: 465 TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 524
+LI + G K + + NE I+F L+NP E EEA G I A+G
Sbjct: 265 DVLISFTRPGPGVIKP--QWIEKXNEDAIVFPLANPV--PEILPEEAK--KAGARIVATG 318
Query: 525 SPFDPFEYGDNVFVPG 540
P + + + PG
Sbjct: 319 RSDYPNQINNLLGFPG 334
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 132/345 (38%), Gaps = 75/345 (21%)
Query: 187 LPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERIL 246
L I YTP V KDK + + K V V++DG +L
Sbjct: 36 LSIAYTPGVASVSSAIA-------------KDK----TLAYDLTTKKNTVAVISDGTAVL 78
Query: 247 GLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKR 304
GLGD+G +PV GK +L+ A G+ +P+ +D E
Sbjct: 79 GLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDTKDTEE--------------- 119
Query: 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKY-GTTHL-VFNDDIQGT 362
+ + A+ +G I ED + F++ ++ H+ VF+DD GT
Sbjct: 120 ---------IISIVKALAPTFGG---INLEDISAPRCFEIEQRLIKECHIPVFHDDQHGT 167
Query: 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 422
A VVLA + +++K L SL + + G G AG I T L K+
Sbjct: 168 AIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI-----------TRKLLAAGATKVT 216
Query: 423 LVDSKGLIVSSRLESL--QHFKKPWAHEHE-PVKELVDAVNAIKPTILIGTSGQGRTFTK 479
+VD G+I L H E L DA+ I IG S G
Sbjct: 217 VVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG--ADIFIGVSAPG-VLKA 273
Query: 480 EVVEAMASLNEKPIIFSLSNPTSQ---SECTAEEAYTWSQGRAIF 521
E + MA+ +P+IF+++NP + E AY GR+ F
Sbjct: 274 EWISKMAA---RPVIFAMANPIPEIYPDEALEAGAYIVGTGRSDF 315
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 154/376 (40%), Gaps = 76/376 (20%)
Query: 173 KLFYKLLIDNVE-ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPE 231
K+ L ++ V+ E L ++YTP V + + +D K W
Sbjct: 15 KIRTALPVEKVDRETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN- 60
Query: 232 KNIQVIVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNE 289
V VV+DG +LGLG++G +G +PV GK L+ A I
Sbjct: 61 ---TVAVVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI----------------- 99
Query: 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYG 349
D F I L + E + + +++ ++G I ED F +L++
Sbjct: 100 ----DAFPICLSESEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLS 146
Query: 350 TTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIS 407
VF+DD QGTA VV A ++A+K + + + + G G AG I + +
Sbjct: 147 EEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL----- 201
Query: 408 KQTNMPLEETRKKIWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIK-PT 465
L+ K + VD KG++ + E+ L + A P + D A++
Sbjct: 202 ------LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD 255
Query: 466 ILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECT-AEEAYTWSQGRAIFASG 524
IG S +G E ++ M+ KP+IF+L+NP + + A EA G I A+G
Sbjct: 256 FFIGVS-RGNILKPEWIKKMS---RKPVIFALANPVPEIDPELAREA-----GAFIVATG 306
Query: 525 SPFDPFEYGDNVFVPG 540
P + + + PG
Sbjct: 307 RSDHPNQVNNLLAFPG 322
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 153/376 (40%), Gaps = 76/376 (20%)
Query: 173 KLFYKLLIDNVE-ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPE 231
K+ L ++ V+ E L ++YTP V + + +D K W
Sbjct: 25 KIRTALPVEKVDRETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN- 70
Query: 232 KNIQVIVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNE 289
V VV+DG +LGLG++G +G +PV GK L+ A I
Sbjct: 71 ---TVAVVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI----------------- 109
Query: 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYG 349
D F I L + E + + +++ ++G I ED F +L++
Sbjct: 110 ----DAFPICLSESEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLS 156
Query: 350 TTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIS 407
VF+DD QGTA VV A ++A+K + + + + G G AG I + +
Sbjct: 157 EEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL----- 211
Query: 408 KQTNMPLEETRKKIWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIK-PT 465
L+ K + VD KG++ + E+ L + A P + D A++
Sbjct: 212 ------LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD 265
Query: 466 ILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECT-AEEAYTWSQGRAIFASG 524
IG S +G E ++ + KP+IF+L+NP + + A EA G I A+G
Sbjct: 266 FFIGVS-RGNILKPEWIKKXS---RKPVIFALANPVPEIDPELAREA-----GAFIVATG 316
Query: 525 SPFDPFEYGDNVFVPG 540
P + + + PG
Sbjct: 317 RSDHPNQVNNLLAFPG 332
>pdb|1SI7|A Chain A, Structure Of E. Coli Trna Psi 13 Pseudouridine Synthase
Trud
Length = 369
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 442
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 179 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 235
Query: 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 499
V ++VD +A++ +G+G F T+E+ E +N+K ++ + +
Sbjct: 236 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELMITAAL 279
Query: 500 PTSQSECTAEEAYTWSQG 517
P S T EA + Q
Sbjct: 280 PGSGEWGTQREALAFEQA 297
>pdb|1SB7|A Chain A, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
pdb|1SB7|B Chain B, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
Length = 368
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 442
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 178 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 234
Query: 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 499
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 235 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 278
Query: 500 PTSQSECTAEEAYTWSQG 517
P S T EA + Q
Sbjct: 279 PGSGEWGTQREALAFEQA 296
>pdb|1SZW|A Chain A, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
pdb|1SZW|B Chain B, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
Length = 379
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 442
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 181 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 237
Query: 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 499
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 238 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 281
Query: 500 PTSQSECTAEEAYTWSQG 517
P S T EA + Q
Sbjct: 282 PGSGEWGTQREALAFEQA 299
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 211 GVFISLKDKGKVLEVLRNWP---EKNIQVIVVTDGERILGLG 249
G+ I + G++L+ ++N P KN+Q +V+ + +RIL +G
Sbjct: 176 GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG 217
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 443 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 93
Query: 502 SQSECTAE 509
+ +E
Sbjct: 94 LAGQLHSE 101
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 443 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 502 SQSECTAE 509
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 443 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 502 SQSECTAE 509
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 443 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 502 SQSECTAE 509
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 443 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 502 SQSECTAE 509
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 352 HLVFNDDIQGTASV-----VLAGLISAMKFLGGSLAD-------QRFLFLGAGEAGTGIA 399
H +N DI G SV ++ +AM+ LG S D ++ L +AG
Sbjct: 146 HYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQTVVEQAGVSAD 205
Query: 400 EL--IALEISKQTNMPLEETRKKIWLVDSKGLIVSS-----RLESLQHFKKPWAHEHEPV 452
+ + + + K +P EE ++ + + +V + L+++ + EHE V
Sbjct: 206 KFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIAQRIGEEHEAV 265
Query: 453 KELVDAVNAIK 463
+EL D + I+
Sbjct: 266 RELRDFITQIE 276
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 368 AVVDLQDRNTELSYQLLLDSI 388
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 356 AVVDLQDRNTELSYQLLLDSI 376
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 357 AVVDLQDRNTELSYQLLLDSI 377
>pdb|3M2L|A Chain A, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|B Chain B, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|C Chain C, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|D Chain D, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|E Chain E, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|F Chain F, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|G Chain G, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
Length = 294
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)
Query: 247 GLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 306
G D+G + + G L Y G+ ID +N+KLL +R K I
Sbjct: 11 GTTDIGSNTT-VKTGDLVTYDKENGMHKKVFYSF-IDDKNHNKKLL------VIRTKGTI 62
Query: 307 GQEYAELLHEFMTA----------VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN 356
+Y E V+ + + Q D+ N+ D E + T FN
Sbjct: 63 AGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYFSTLTYGFN 122
Query: 357 DDIQGTASVVLAGLISAMKFLGGSL 381
++ G + + GLI A +G +L
Sbjct: 123 GNVTGDDTGKIGGLIGANVSIGHTL 147
>pdb|3M3R|A Chain A, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|B Chain B, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|C Chain C, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|D Chain D, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|E Chain E, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|F Chain F, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|G Chain G, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
Length = 293
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)
Query: 247 GLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 306
G D+G + + G L Y G+ ID +N+KLL +R K I
Sbjct: 10 GTTDIGSNTT-VKTGDLVTYDKENGMHKKVFYSF-IDDKNHNKKLL------VIRTKGTI 61
Query: 307 GQEYAELLHEFMTA----------VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN 356
+Y E V+ + + Q D+ N+ D E + T FN
Sbjct: 62 AGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYFSTLTYGFN 121
Query: 357 DDIQGTASVVLAGLISAMKFLGGSL 381
++ G + + GLI A +G +L
Sbjct: 122 GNVTGDDTGKIGGLIGANVSIGHTL 146
>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
Length = 932
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 338 AVVDLQDRNTELSYQLLLDSL 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,445,591
Number of Sequences: 62578
Number of extensions: 708676
Number of successful extensions: 1927
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 40
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)