Query 009138
Match_columns 542
No_of_seqs 241 out of 1506
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 20:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 3E-189 6E-194 1483.5 41.4 460 82-542 8-468 (582)
2 PRK13529 malate dehydrogenase; 100.0 7E-179 2E-183 1429.5 42.6 440 100-542 13-461 (563)
3 PTZ00317 NADP-dependent malic 100.0 1E-178 3E-183 1426.3 43.0 443 98-542 13-460 (559)
4 PLN03129 NADP-dependent malic 100.0 2E-178 4E-183 1430.5 43.2 442 101-542 39-480 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 7.6E-99 2E-103 784.9 23.5 334 137-540 1-340 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 2.8E-92 6E-97 783.7 26.7 291 184-540 34-327 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 2.5E-91 5.3E-96 779.1 27.0 290 184-540 38-331 (763)
8 PRK07232 bifunctional malic en 100.0 1.7E-90 3.8E-95 769.5 27.5 290 184-540 30-323 (752)
9 PF00390 malic: Malic enzyme, 100.0 1.2E-83 2.6E-88 611.9 8.8 182 168-349 1-182 (182)
10 PF03949 Malic_M: Malic enzyme 100.0 2.7E-69 6E-74 537.1 15.4 182 359-542 1-185 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 3.8E-68 8.3E-73 528.5 20.1 182 359-542 1-185 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 2.8E-67 6.1E-72 528.4 20.2 182 359-542 1-184 (279)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.9E-35 4E-40 289.0 17.0 163 359-540 1-166 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 2E-08 4.4E-13 84.4 11.5 86 361-498 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 98.0 0.00022 4.8E-09 77.2 16.0 160 304-501 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.6 0.00039 8.4E-09 74.5 10.5 126 360-509 158-285 (417)
17 PLN02477 glutamate dehydrogena 97.5 0.0038 8.3E-08 67.5 17.5 185 305-513 112-324 (410)
18 PRK09414 glutamate dehydrogena 97.5 0.0049 1.1E-07 67.3 17.4 188 305-513 138-357 (445)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0021 4.5E-08 63.7 12.2 134 362-518 2-144 (217)
20 TIGR00936 ahcY adenosylhomocys 97.4 0.0031 6.7E-08 68.1 14.0 127 351-511 156-293 (406)
21 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0014 3E-08 67.5 10.3 136 339-501 139-276 (311)
22 PRK00045 hemA glutamyl-tRNA re 97.3 0.0012 2.5E-08 70.9 9.7 125 361-509 161-288 (423)
23 cd00401 AdoHcyase S-adenosyl-L 97.3 0.004 8.6E-08 67.4 13.6 129 351-513 163-302 (413)
24 TIGR02853 spore_dpaA dipicolin 97.2 0.0033 7.2E-08 64.5 11.4 138 359-526 127-265 (287)
25 PRK14030 glutamate dehydrogena 97.2 0.022 4.9E-07 62.3 18.2 189 305-513 134-357 (445)
26 PLN02494 adenosylhomocysteinas 97.1 0.0069 1.5E-07 66.7 13.2 131 351-514 215-355 (477)
27 PRK14031 glutamate dehydrogena 97.1 0.021 4.6E-07 62.5 16.8 181 305-501 134-347 (444)
28 PRK14982 acyl-ACP reductase; P 97.0 0.0052 1.1E-07 65.0 11.5 114 362-502 134-250 (340)
29 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.005 1.1E-07 58.9 10.2 90 368-501 29-119 (168)
30 PF01488 Shikimate_DH: Shikima 96.9 0.00078 1.7E-08 61.3 3.6 102 379-502 8-113 (135)
31 PRK08306 dipicolinate synthase 96.8 0.0095 2.1E-07 61.3 11.3 129 365-527 134-267 (296)
32 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.016 3.6E-07 56.3 11.2 128 361-519 4-134 (200)
33 PLN00203 glutamyl-tRNA reducta 96.7 0.0068 1.5E-07 67.3 9.1 121 361-501 243-372 (519)
34 COG0373 HemA Glutamyl-tRNA red 96.7 0.0072 1.6E-07 65.5 9.1 135 339-502 139-278 (414)
35 cd05313 NAD_bind_2_Glu_DH NAD( 96.6 0.038 8.1E-07 56.5 13.6 133 361-513 16-167 (254)
36 cd01076 NAD_bind_1_Glu_DH NAD( 96.6 0.018 4E-07 57.4 10.7 132 360-513 8-149 (227)
37 PTZ00075 Adenosylhomocysteinas 96.5 0.052 1.1E-06 60.0 14.8 123 351-501 215-344 (476)
38 PLN00106 malate dehydrogenase 96.5 0.022 4.7E-07 59.8 11.4 142 368-525 4-165 (323)
39 PTZ00079 NADP-specific glutama 96.5 0.22 4.8E-06 54.9 19.3 195 305-522 143-373 (454)
40 PRK13940 glutamyl-tRNA reducta 96.2 0.016 3.6E-07 62.6 8.7 131 340-501 143-276 (414)
41 PF00670 AdoHcyase_NAD: S-aden 96.1 0.09 2E-06 50.6 12.3 120 360-513 3-123 (162)
42 PRK14175 bifunctional 5,10-met 96.1 0.02 4.3E-07 59.5 8.3 96 361-500 136-232 (286)
43 PRK14192 bifunctional 5,10-met 96.1 0.032 6.9E-07 57.6 9.8 109 361-513 137-250 (283)
44 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.039 8.4E-07 52.5 9.4 114 362-501 7-132 (194)
45 cd01065 NAD_bind_Shikimate_DH 96.0 0.024 5.2E-07 51.2 7.2 134 368-527 4-141 (155)
46 cd00650 LDH_MDH_like NAD-depen 95.8 0.018 3.9E-07 57.6 6.2 130 386-530 1-149 (263)
47 PRK12549 shikimate 5-dehydroge 95.8 0.032 7E-07 57.2 8.0 90 368-474 112-203 (284)
48 TIGR00518 alaDH alanine dehydr 95.7 0.035 7.6E-07 59.0 8.4 95 381-499 165-268 (370)
49 cd05291 HicDH_like L-2-hydroxy 95.6 0.035 7.6E-07 57.0 7.3 127 385-527 2-145 (306)
50 TIGR01809 Shik-DH-AROM shikima 95.3 0.039 8.6E-07 56.3 6.8 104 352-483 100-210 (282)
51 PF03807 F420_oxidored: NADP o 95.2 0.032 7E-07 46.8 4.9 94 385-500 1-96 (96)
52 PF00208 ELFV_dehydrog: Glutam 95.1 0.054 1.2E-06 54.7 6.9 131 357-501 5-151 (244)
53 PRK00676 hemA glutamyl-tRNA re 95.1 0.094 2E-06 55.7 8.9 124 339-503 136-266 (338)
54 PRK08293 3-hydroxybutyryl-CoA 95.0 0.074 1.6E-06 53.9 7.7 124 384-532 4-149 (287)
55 cd05296 GH4_P_beta_glucosidase 95.0 0.054 1.2E-06 58.8 6.9 127 384-526 1-168 (419)
56 PRK00066 ldh L-lactate dehydro 94.9 0.054 1.2E-06 56.4 6.6 127 384-527 7-150 (315)
57 PTZ00082 L-lactate dehydrogena 94.9 0.096 2.1E-06 54.7 8.3 128 382-527 5-156 (321)
58 PRK10792 bifunctional 5,10-met 94.9 0.24 5.2E-06 51.6 11.0 116 363-526 139-260 (285)
59 cd05212 NAD_bind_m-THF_DH_Cycl 94.7 0.26 5.6E-06 46.1 9.8 91 364-497 9-99 (140)
60 PTZ00117 malate dehydrogenase; 94.7 0.15 3.2E-06 53.1 9.0 127 382-526 4-149 (319)
61 PRK09424 pntA NAD(P) transhydr 94.7 0.19 4.1E-06 56.1 10.3 108 380-508 162-296 (509)
62 PRK06223 malate dehydrogenase; 94.5 0.09 2E-06 53.6 6.9 127 384-527 3-147 (307)
63 PRK08605 D-lactate dehydrogena 94.5 0.92 2E-05 47.6 14.4 154 315-500 59-238 (332)
64 cd05197 GH4_glycoside_hydrolas 94.5 0.098 2.1E-06 56.9 7.5 126 384-525 1-167 (425)
65 PF00056 Ldh_1_N: lactate/mala 94.5 0.026 5.7E-07 52.0 2.7 115 384-514 1-131 (141)
66 PRK05086 malate dehydrogenase; 94.4 0.23 5.1E-06 51.6 9.7 126 384-525 1-148 (312)
67 TIGR02356 adenyl_thiF thiazole 94.3 0.083 1.8E-06 51.4 5.7 104 379-498 17-144 (202)
68 PRK14191 bifunctional 5,10-met 94.1 0.19 4E-06 52.4 8.2 92 363-498 137-229 (285)
69 PLN02928 oxidoreductase family 94.1 0.5 1.1E-05 50.0 11.6 122 360-500 120-264 (347)
70 PTZ00325 malate dehydrogenase; 93.9 0.38 8.1E-06 50.7 10.0 106 381-501 6-128 (321)
71 PRK00257 erythronate-4-phospha 93.8 0.56 1.2E-05 50.5 11.3 117 351-499 81-208 (381)
72 PRK15076 alpha-galactosidase; 93.4 0.21 4.6E-06 54.3 7.4 128 384-527 2-173 (431)
73 TIGR02354 thiF_fam2 thiamine b 93.3 0.14 3E-06 50.1 5.3 38 379-427 17-54 (200)
74 cd01337 MDH_glyoxysomal_mitoch 93.2 0.52 1.1E-05 49.4 9.6 123 385-525 2-147 (310)
75 PRK09260 3-hydroxybutyryl-CoA 93.1 0.19 4.2E-06 50.8 6.1 127 384-532 2-146 (288)
76 PRK15438 erythronate-4-phospha 93.0 0.88 1.9E-05 49.1 11.3 108 360-499 93-208 (378)
77 cd01079 NAD_bind_m-THF_DH NAD 93.0 0.6 1.3E-05 46.5 9.2 109 364-495 34-153 (197)
78 cd05297 GH4_alpha_glucosidase_ 92.9 0.26 5.7E-06 53.3 7.2 124 385-524 2-167 (423)
79 PRK06129 3-hydroxyacyl-CoA deh 92.9 0.2 4.4E-06 51.3 6.0 130 384-531 3-146 (308)
80 TIGR01763 MalateDH_bact malate 92.7 0.24 5.1E-06 51.4 6.3 124 384-525 2-144 (305)
81 PRK06130 3-hydroxybutyryl-CoA 92.7 0.58 1.2E-05 47.7 9.0 123 384-532 5-144 (311)
82 PRK12749 quinate/shikimate deh 92.7 0.25 5.5E-06 51.0 6.4 49 368-427 109-157 (288)
83 TIGR00561 pntA NAD(P) transhyd 92.7 0.57 1.2E-05 52.4 9.6 175 289-498 80-284 (511)
84 PRK08328 hypothetical protein; 92.6 0.069 1.5E-06 53.1 2.2 54 345-427 7-60 (231)
85 PRK08644 thiamine biosynthesis 92.6 0.29 6.3E-06 48.3 6.5 38 379-427 24-61 (212)
86 PF01210 NAD_Gly3P_dh_N: NAD-d 92.6 0.19 4.1E-06 46.8 4.9 85 385-489 1-93 (157)
87 PRK12475 thiamine/molybdopteri 92.5 0.19 4E-06 53.1 5.3 99 379-496 20-147 (338)
88 PRK14619 NAD(P)H-dependent gly 92.5 1.2 2.7E-05 45.7 11.2 33 383-427 4-36 (308)
89 PRK08223 hypothetical protein; 92.5 0.24 5.3E-06 51.6 6.1 124 342-498 4-152 (287)
90 cd00704 MDH Malate dehydrogena 92.5 0.65 1.4E-05 48.8 9.2 121 385-515 2-140 (323)
91 PRK08762 molybdopterin biosynt 92.4 0.24 5.3E-06 52.5 6.0 103 379-497 131-257 (376)
92 PRK14194 bifunctional 5,10-met 92.3 0.53 1.1E-05 49.4 8.3 94 363-500 139-234 (301)
93 PF02826 2-Hacid_dh_C: D-isome 92.3 0.42 9.1E-06 45.4 6.9 117 374-520 27-147 (178)
94 PRK14189 bifunctional 5,10-met 92.2 0.52 1.1E-05 49.1 8.0 93 362-498 137-230 (285)
95 TIGR01758 MDH_euk_cyt malate d 92.2 0.94 2E-05 47.6 10.0 134 385-528 1-154 (324)
96 PRK12548 shikimate 5-dehydroge 92.2 0.42 9.1E-06 49.0 7.2 58 351-427 102-159 (289)
97 cd00757 ThiF_MoeB_HesA_family 92.2 0.54 1.2E-05 46.4 7.7 38 379-427 17-54 (228)
98 PRK05600 thiamine biosynthesis 92.1 0.39 8.4E-06 51.4 7.1 102 379-496 37-162 (370)
99 COG0334 GdhA Glutamate dehydro 92.0 4.2 9.2E-05 44.6 14.9 187 304-513 111-325 (411)
100 PRK14178 bifunctional 5,10-met 92.0 0.45 9.7E-06 49.5 7.3 109 361-513 130-243 (279)
101 cd01336 MDH_cytoplasmic_cytoso 92.0 1.1 2.4E-05 47.0 10.3 133 384-526 3-155 (325)
102 PRK14176 bifunctional 5,10-met 91.8 0.69 1.5E-05 48.3 8.4 116 362-525 143-263 (287)
103 PRK14027 quinate/shikimate deh 91.8 0.36 7.9E-06 49.7 6.3 49 368-427 112-160 (283)
104 TIGR01772 MDH_euk_gproteo mala 91.6 1.4 3.1E-05 46.2 10.5 126 385-525 1-146 (312)
105 cd01487 E1_ThiF_like E1_ThiF_l 91.4 0.65 1.4E-05 44.3 7.2 96 385-496 1-120 (174)
106 cd05293 LDH_1 A subgroup of L- 91.4 0.5 1.1E-05 49.4 6.9 127 384-527 4-148 (312)
107 TIGR02992 ectoine_eutC ectoine 91.3 0.97 2.1E-05 47.2 8.9 115 369-510 117-237 (326)
108 PRK00258 aroE shikimate 5-dehy 91.1 0.52 1.1E-05 47.9 6.6 88 367-474 106-196 (278)
109 TIGR02355 moeB molybdopterin s 90.8 0.83 1.8E-05 46.0 7.6 101 379-498 20-147 (240)
110 cd01339 LDH-like_MDH L-lactate 90.8 0.45 9.7E-06 48.7 5.8 119 386-526 1-142 (300)
111 cd05290 LDH_3 A subgroup of L- 90.7 0.6 1.3E-05 48.7 6.7 124 385-526 1-146 (307)
112 PRK07531 bifunctional 3-hydrox 90.6 0.94 2E-05 49.9 8.4 132 384-540 5-154 (495)
113 PRK07688 thiamine/molybdopteri 90.4 0.4 8.6E-06 50.6 5.2 39 379-428 20-58 (339)
114 COG0111 SerA Phosphoglycerate 90.4 2.1 4.5E-05 45.2 10.5 111 351-486 89-224 (324)
115 cd05298 GH4_GlvA_pagL_like Gly 90.2 0.7 1.5E-05 50.6 6.9 110 384-508 1-151 (437)
116 PRK07634 pyrroline-5-carboxyla 90.2 0.81 1.8E-05 44.7 6.8 100 382-501 3-102 (245)
117 PF00899 ThiF: ThiF family; I 90.1 0.5 1.1E-05 42.6 4.9 37 382-429 1-37 (135)
118 PRK05690 molybdopterin biosynt 90.1 1 2.2E-05 45.4 7.5 105 379-499 28-156 (245)
119 TIGR01915 npdG NADPH-dependent 89.9 1.4 2.9E-05 43.1 8.0 96 385-503 2-106 (219)
120 PLN02306 hydroxypyruvate reduc 89.8 3.4 7.4E-05 44.6 11.7 129 349-499 107-273 (386)
121 PF01262 AlaDh_PNT_C: Alanine 89.8 0.18 4E-06 47.4 1.9 98 381-498 18-139 (168)
122 COG0169 AroE Shikimate 5-dehyd 89.8 0.72 1.6E-05 47.9 6.4 85 369-474 110-201 (283)
123 PRK13243 glyoxylate reductase; 89.6 4.4 9.4E-05 42.7 12.0 122 350-500 89-242 (333)
124 PRK14184 bifunctional 5,10-met 89.5 1.1 2.4E-05 46.7 7.5 97 362-498 136-233 (286)
125 cd05292 LDH_2 A subgroup of L- 89.4 0.7 1.5E-05 47.9 5.9 126 385-527 2-144 (308)
126 PRK14179 bifunctional 5,10-met 89.4 1.3 2.8E-05 46.2 7.8 93 362-498 137-230 (284)
127 PRK14851 hypothetical protein; 89.3 1.7 3.6E-05 50.3 9.3 122 379-517 39-194 (679)
128 TIGR00872 gnd_rel 6-phosphoglu 89.2 1.5 3.4E-05 44.9 8.2 99 385-509 2-102 (298)
129 PRK14183 bifunctional 5,10-met 89.2 1.5 3.3E-05 45.7 8.1 93 361-497 135-228 (281)
130 PLN02602 lactate dehydrogenase 89.2 1.1 2.3E-05 47.9 7.2 124 384-526 38-181 (350)
131 PRK14190 bifunctional 5,10-met 89.1 1.5 3.2E-05 45.8 8.0 93 362-498 137-230 (284)
132 PRK08374 homoserine dehydrogen 88.9 2.2 4.8E-05 45.0 9.2 105 384-495 3-120 (336)
133 PRK11880 pyrroline-5-carboxyla 88.9 2.1 4.5E-05 42.6 8.6 122 384-533 3-124 (267)
134 PRK14618 NAD(P)H-dependent gly 88.9 0.61 1.3E-05 48.0 5.0 95 384-501 5-107 (328)
135 PRK06487 glycerate dehydrogena 88.8 6.5 0.00014 41.1 12.6 116 350-499 88-234 (317)
136 PRK06035 3-hydroxyacyl-CoA deh 88.8 1.8 3.9E-05 43.9 8.3 137 384-541 4-160 (291)
137 cd01338 MDH_choloroplast_like 88.7 2.6 5.6E-05 44.3 9.5 122 384-515 3-142 (322)
138 cd00755 YgdL_like Family of ac 88.5 0.58 1.3E-05 47.0 4.5 37 380-427 8-44 (231)
139 PRK07066 3-hydroxybutyryl-CoA 88.3 1.8 3.9E-05 45.6 8.2 32 384-427 8-39 (321)
140 PRK14188 bifunctional 5,10-met 88.3 1.6 3.4E-05 45.8 7.6 92 363-498 138-230 (296)
141 TIGR01759 MalateDH-SF1 malate 88.2 2.9 6.3E-05 44.1 9.6 122 384-515 4-143 (323)
142 PF02056 Glyco_hydro_4: Family 88.2 0.84 1.8E-05 44.7 5.2 110 385-508 1-152 (183)
143 PTZ00345 glycerol-3-phosphate 88.1 2 4.3E-05 46.1 8.4 95 381-487 9-115 (365)
144 PRK12480 D-lactate dehydrogena 88.0 5.2 0.00011 42.1 11.3 119 350-499 91-235 (330)
145 PF02882 THF_DHG_CYH_C: Tetrah 87.9 2.3 5E-05 40.8 7.9 84 362-483 15-99 (160)
146 PRK06436 glycerate dehydrogena 87.8 7.9 0.00017 40.5 12.4 92 378-501 117-212 (303)
147 PRK14174 bifunctional 5,10-met 87.6 1.9 4.2E-05 45.2 7.7 96 363-498 139-235 (295)
148 PRK05442 malate dehydrogenase; 87.4 3.4 7.3E-05 43.7 9.5 122 384-515 5-144 (326)
149 PRK12550 shikimate 5-dehydroge 87.3 1.3 2.9E-05 45.4 6.3 48 368-427 108-155 (272)
150 PRK00094 gpsA NAD(P)H-dependen 87.3 1.1 2.4E-05 45.3 5.7 101 385-501 3-108 (325)
151 PRK08291 ectoine utilization p 87.2 2.3 5.1E-05 44.4 8.2 115 369-510 120-240 (330)
152 PRK07530 3-hydroxybutyryl-CoA 86.9 3.4 7.5E-05 41.9 9.0 32 384-427 5-36 (292)
153 PRK14177 bifunctional 5,10-met 86.9 2.7 5.9E-05 44.0 8.3 105 364-512 140-246 (284)
154 PRK07574 formate dehydrogenase 86.7 4.1 8.8E-05 44.2 9.8 117 378-523 187-307 (385)
155 COG0686 Ald Alanine dehydrogen 86.7 1.1 2.3E-05 48.0 5.3 106 381-510 166-290 (371)
156 PRK14172 bifunctional 5,10-met 86.5 3 6.6E-05 43.5 8.4 91 363-497 138-229 (278)
157 PRK15469 ghrA bifunctional gly 86.5 6.1 0.00013 41.4 10.7 128 351-511 84-235 (312)
158 PRK08410 2-hydroxyacid dehydro 86.4 7.5 0.00016 40.5 11.3 135 350-520 85-252 (311)
159 TIGR01771 L-LDH-NAD L-lactate 86.1 1.2 2.7E-05 46.1 5.4 125 388-527 1-141 (299)
160 PRK13581 D-3-phosphoglycerate 85.9 6.8 0.00015 43.8 11.4 140 350-520 86-250 (526)
161 PLN02516 methylenetetrahydrofo 85.6 3.3 7.2E-05 43.6 8.2 92 361-496 145-237 (299)
162 PRK14171 bifunctional 5,10-met 85.6 3.4 7.4E-05 43.3 8.2 94 361-498 137-231 (288)
163 PRK14187 bifunctional 5,10-met 85.3 3.7 8.1E-05 43.1 8.4 92 362-497 139-231 (294)
164 PLN03139 formate dehydrogenase 85.3 7.7 0.00017 42.1 11.0 117 378-525 194-316 (386)
165 PRK06141 ornithine cyclodeamin 85.2 4.3 9.4E-05 42.2 8.9 105 381-510 123-232 (314)
166 PRK15116 sulfur acceptor prote 85.1 2.7 5.9E-05 43.4 7.2 106 379-503 26-135 (268)
167 PRK09880 L-idonate 5-dehydroge 85.1 15 0.00032 37.8 12.5 44 371-426 159-202 (343)
168 PRK12921 2-dehydropantoate 2-r 85.0 2.3 4.9E-05 42.8 6.5 100 385-502 2-106 (305)
169 PRK14193 bifunctional 5,10-met 84.9 3.7 7.9E-05 43.0 8.1 93 363-497 138-231 (284)
170 TIGR01327 PGDH D-3-phosphoglyc 84.9 7.2 0.00016 43.6 10.9 143 350-522 84-251 (525)
171 PRK06522 2-dehydropantoate 2-r 84.8 2.9 6.2E-05 41.8 7.1 100 385-501 2-103 (304)
172 PRK14166 bifunctional 5,10-met 84.7 3.9 8.5E-05 42.7 8.2 94 361-498 135-229 (282)
173 cd01485 E1-1_like Ubiquitin ac 84.7 0.88 1.9E-05 44.3 3.3 39 379-428 15-53 (198)
174 COG1486 CelF Alpha-galactosida 84.6 0.75 1.6E-05 50.7 3.1 124 382-520 2-166 (442)
175 cd05294 LDH-like_MDH_nadp A la 84.6 5.1 0.00011 41.7 9.1 121 384-525 1-147 (309)
176 KOG0029 Amine oxidase [Seconda 84.6 0.57 1.2E-05 52.2 2.2 36 382-420 14-49 (501)
177 COG0345 ProC Pyrroline-5-carbo 84.4 5.2 0.00011 41.5 8.9 35 384-427 2-37 (266)
178 PRK15409 bifunctional glyoxyla 84.3 9.4 0.0002 40.2 10.9 122 350-499 88-237 (323)
179 PRK14170 bifunctional 5,10-met 84.1 4.4 9.4E-05 42.5 8.3 93 362-498 136-229 (284)
180 PRK15317 alkyl hydroperoxide r 83.8 1.6 3.4E-05 48.1 5.2 85 331-427 148-243 (517)
181 cd00300 LDH_like L-lactate deh 83.5 2.4 5.1E-05 43.8 6.0 124 386-526 1-142 (300)
182 TIGR03140 AhpF alkyl hydropero 83.3 1.7 3.8E-05 47.8 5.3 74 331-404 149-233 (515)
183 PRK09599 6-phosphogluconate de 83.3 5.8 0.00013 40.6 8.7 93 385-501 2-97 (301)
184 cd01492 Aos1_SUMO Ubiquitin ac 83.3 1 2.2E-05 44.0 3.1 39 379-428 17-55 (197)
185 TIGR03366 HpnZ_proposed putati 83.1 12 0.00025 37.4 10.6 47 368-426 107-153 (280)
186 PRK14185 bifunctional 5,10-met 83.1 5.4 0.00012 42.0 8.4 94 363-496 137-231 (293)
187 PRK09310 aroDE bifunctional 3- 83.0 2.4 5.3E-05 46.7 6.2 47 368-426 317-363 (477)
188 PRK14168 bifunctional 5,10-met 82.9 5.1 0.00011 42.2 8.2 98 361-498 139-237 (297)
189 TIGR00507 aroE shikimate 5-deh 82.9 2.9 6.3E-05 42.2 6.3 48 368-427 102-149 (270)
190 PF07992 Pyr_redox_2: Pyridine 82.8 1.9 4.1E-05 39.9 4.6 32 385-428 1-32 (201)
191 PRK07680 late competence prote 82.8 3 6.5E-05 42.0 6.3 98 385-502 2-100 (273)
192 PRK06932 glycerate dehydrogena 82.7 12 0.00025 39.2 10.8 109 379-522 143-255 (314)
193 PLN02527 aspartate carbamoyltr 82.7 38 0.00083 35.6 14.6 129 323-473 94-228 (306)
194 PRK07819 3-hydroxybutyryl-CoA 82.5 2.8 6E-05 43.0 6.0 32 384-427 6-37 (286)
195 KOG0685 Flavin-containing amin 82.4 0.72 1.6E-05 51.3 1.9 26 379-404 17-42 (498)
196 PRK11790 D-3-phosphoglycerate 82.2 19 0.00041 39.1 12.5 127 343-500 90-241 (409)
197 cd01483 E1_enzyme_family Super 82.0 1.9 4.2E-05 39.0 4.2 33 385-428 1-33 (143)
198 PRK02842 light-independent pro 82.0 7 0.00015 42.4 9.2 88 369-471 276-368 (427)
199 PRK07679 pyrroline-5-carboxyla 81.7 7.7 0.00017 39.2 8.8 22 383-404 3-24 (279)
200 PRK14620 NAD(P)H-dependent gly 81.0 3.7 8E-05 42.2 6.4 31 385-427 2-32 (326)
201 PLN00112 malate dehydrogenase 80.8 6.5 0.00014 43.5 8.5 138 383-528 100-255 (444)
202 PRK12439 NAD(P)H-dependent gly 80.5 2.7 5.9E-05 44.0 5.3 103 383-501 7-114 (341)
203 PLN02819 lysine-ketoglutarate 80.1 9.3 0.0002 46.5 10.0 114 368-487 179-326 (1042)
204 TIGR01408 Ube1 ubiquitin-activ 80.1 0.86 1.9E-05 54.8 1.6 88 314-427 358-457 (1008)
205 TIGR01381 E1_like_apg7 E1-like 80.0 1.7 3.8E-05 50.1 3.9 40 379-429 334-373 (664)
206 PRK12490 6-phosphogluconate de 79.8 9.4 0.0002 39.2 8.8 93 385-501 2-97 (299)
207 PRK14180 bifunctional 5,10-met 79.7 7.8 0.00017 40.5 8.2 92 361-496 136-228 (282)
208 PLN02545 3-hydroxybutyryl-CoA 79.6 15 0.00032 37.4 10.1 32 384-427 5-36 (295)
209 PRK07340 ornithine cyclodeamin 79.4 15 0.00033 38.1 10.3 105 381-511 123-231 (304)
210 PRK14106 murD UDP-N-acetylmura 79.4 8.6 0.00019 41.1 8.7 36 380-427 2-37 (450)
211 PRK14182 bifunctional 5,10-met 79.4 8.8 0.00019 40.2 8.4 90 363-496 137-227 (282)
212 PRK05597 molybdopterin biosynt 79.3 2.3 4.9E-05 45.2 4.2 104 379-498 24-151 (355)
213 PRK07231 fabG 3-ketoacyl-(acyl 79.0 5.4 0.00012 38.0 6.4 36 380-427 2-38 (251)
214 PRK14167 bifunctional 5,10-met 79.0 8.9 0.00019 40.4 8.4 96 363-498 137-233 (297)
215 PRK14169 bifunctional 5,10-met 78.9 9.3 0.0002 40.0 8.5 91 362-496 135-226 (282)
216 PRK06153 hypothetical protein; 78.7 3.8 8.3E-05 44.7 5.8 100 307-427 110-209 (393)
217 PRK14181 bifunctional 5,10-met 78.6 10 0.00022 39.8 8.6 98 361-498 131-229 (287)
218 cd08237 ribitol-5-phosphate_DH 78.4 51 0.0011 34.0 13.7 35 382-426 163-197 (341)
219 PRK14173 bifunctional 5,10-met 78.3 9.2 0.0002 40.1 8.2 91 363-497 135-226 (287)
220 TIGR02371 ala_DH_arch alanine 78.0 15 0.00033 38.5 9.8 104 382-510 127-235 (325)
221 PF02423 OCD_Mu_crystall: Orni 78.0 4.4 9.5E-05 42.2 5.8 104 383-511 128-238 (313)
222 PRK06270 homoserine dehydrogen 77.9 17 0.00037 38.4 10.2 104 384-495 3-123 (341)
223 PF03446 NAD_binding_2: NAD bi 77.7 2.1 4.6E-05 39.9 3.1 101 384-511 2-105 (163)
224 PRK08229 2-dehydropantoate 2-r 77.7 5 0.00011 41.2 6.1 102 384-502 3-111 (341)
225 PF01494 FAD_binding_3: FAD bi 77.7 3 6.4E-05 41.3 4.3 35 384-430 2-36 (356)
226 PLN02616 tetrahydrofolate dehy 77.2 9.5 0.00021 41.4 8.1 90 363-496 211-301 (364)
227 PF01113 DapB_N: Dihydrodipico 77.2 5.4 0.00012 35.9 5.5 95 385-496 2-97 (124)
228 TIGR02622 CDP_4_6_dhtase CDP-g 77.1 7.7 0.00017 39.8 7.3 106 381-498 2-127 (349)
229 PRK07878 molybdopterin biosynt 76.8 2.3 5E-05 45.7 3.5 103 379-497 38-164 (392)
230 PRK07502 cyclohexadienyl dehyd 76.7 11 0.00024 38.6 8.3 34 384-427 7-40 (307)
231 PTZ00142 6-phosphogluconate de 76.7 5.1 0.00011 44.4 6.2 97 385-501 3-104 (470)
232 PF13738 Pyr_redox_3: Pyridine 76.5 2.8 6.1E-05 39.0 3.6 30 387-427 1-30 (203)
233 COG0039 Mdh Malate/lactate deh 76.3 7.8 0.00017 41.2 7.1 104 384-501 1-121 (313)
234 PRK07411 hypothetical protein; 76.0 2.8 6.1E-05 45.1 3.9 104 379-498 34-161 (390)
235 PRK14186 bifunctional 5,10-met 75.9 12 0.00027 39.4 8.4 91 363-497 138-229 (297)
236 PRK06407 ornithine cyclodeamin 75.8 12 0.00027 38.9 8.4 105 382-511 116-226 (301)
237 KOG0069 Glyoxylate/hydroxypyru 75.8 19 0.0004 38.8 9.8 132 361-525 120-277 (336)
238 TIGR03376 glycerol3P_DH glycer 75.6 5.9 0.00013 42.1 6.1 20 385-404 1-20 (342)
239 PRK09754 phenylpropionate diox 75.2 4.2 9.1E-05 42.9 4.9 36 382-427 2-37 (396)
240 TIGR00873 gnd 6-phosphoglucona 75.1 8.4 0.00018 42.7 7.3 95 385-499 1-99 (467)
241 PLN02520 bifunctional 3-dehydr 75.1 6.3 0.00014 44.2 6.4 38 378-427 374-411 (529)
242 PF00070 Pyr_redox: Pyridine n 74.9 5.7 0.00012 32.5 4.6 35 385-431 1-35 (80)
243 COG1052 LdhA Lactate dehydroge 74.6 21 0.00046 37.9 9.8 94 376-499 139-237 (324)
244 PRK10886 DnaA initiator-associ 74.5 14 0.0003 36.5 8.0 99 381-499 39-144 (196)
245 PRK01713 ornithine carbamoyltr 74.4 20 0.00044 38.1 9.7 137 315-471 92-233 (334)
246 cd01491 Ube1_repeat1 Ubiquitin 74.3 3 6.4E-05 43.5 3.4 38 379-427 15-52 (286)
247 PLN02897 tetrahydrofolate dehy 74.3 12 0.00026 40.3 8.0 91 363-497 194-285 (345)
248 PRK01710 murD UDP-N-acetylmura 74.1 24 0.00053 38.3 10.4 111 381-525 12-125 (458)
249 PF02737 3HCDH_N: 3-hydroxyacy 73.9 4.6 9.9E-05 38.7 4.4 96 385-495 1-110 (180)
250 PRK06823 ornithine cyclodeamin 73.4 25 0.00055 37.0 10.0 105 382-511 127-236 (315)
251 PF03447 NAD_binding_3: Homose 73.3 6.4 0.00014 34.5 4.8 88 390-495 1-88 (117)
252 PRK06928 pyrroline-5-carboxyla 72.2 9.5 0.00021 38.8 6.4 35 384-427 2-37 (277)
253 cd01484 E1-2_like Ubiquitin ac 71.9 5 0.00011 40.5 4.3 33 385-428 1-33 (234)
254 TIGR01292 TRX_reduct thioredox 71.9 4.6 9.9E-05 39.6 3.9 31 385-427 2-32 (300)
255 COG2423 Predicted ornithine cy 71.5 20 0.00043 38.4 8.7 122 366-513 115-241 (330)
256 KOG2250 Glutamate/leucine/phen 71.3 1E+02 0.0022 35.0 14.3 191 309-521 159-385 (514)
257 TIGR01214 rmlD dTDP-4-dehydror 71.1 18 0.0004 35.5 8.0 60 385-474 1-61 (287)
258 COG0190 FolD 5,10-methylene-te 70.9 12 0.00026 39.4 6.8 92 360-495 133-225 (283)
259 PRK05808 3-hydroxybutyryl-CoA 70.8 9.6 0.00021 38.5 6.0 32 384-427 4-35 (282)
260 cd01486 Apg7 Apg7 is an E1-lik 70.7 5.5 0.00012 42.3 4.4 32 385-427 1-32 (307)
261 PRK06476 pyrroline-5-carboxyla 70.3 14 0.00029 36.9 6.9 33 385-426 2-34 (258)
262 COG5322 Predicted dehydrogenas 69.9 6.1 0.00013 41.8 4.4 46 359-404 143-189 (351)
263 PRK15181 Vi polysaccharide bio 69.8 21 0.00045 37.0 8.4 105 377-498 9-141 (348)
264 PRK11883 protoporphyrinogen ox 69.6 3.2 7E-05 43.5 2.5 22 384-405 1-22 (451)
265 COG0240 GpsA Glycerol-3-phosph 69.6 10 0.00022 40.7 6.1 94 384-498 2-105 (329)
266 cd01488 Uba3_RUB Ubiquitin act 69.3 5.9 0.00013 41.5 4.3 32 385-427 1-32 (291)
267 TIGR00670 asp_carb_tr aspartat 68.7 1.6E+02 0.0035 31.0 15.4 136 314-473 85-226 (301)
268 PF05834 Lycopene_cycl: Lycope 68.4 6.3 0.00014 41.5 4.3 35 386-430 2-36 (374)
269 PRK11199 tyrA bifunctional cho 68.3 27 0.00059 37.3 9.1 33 383-427 98-131 (374)
270 TIGR00465 ilvC ketol-acid redu 68.1 19 0.00041 37.9 7.7 24 381-404 1-24 (314)
271 PRK06046 alanine dehydrogenase 68.0 34 0.00075 35.8 9.6 103 382-510 128-236 (326)
272 TIGR02028 ChlP geranylgeranyl 67.9 5.8 0.00013 42.2 4.0 20 385-404 2-21 (398)
273 PRK08618 ornithine cyclodeamin 67.9 14 0.0003 38.6 6.7 102 382-509 126-233 (325)
274 TIGR02023 BchP-ChlP geranylger 67.7 6 0.00013 41.5 4.0 20 385-404 2-21 (388)
275 PRK07877 hypothetical protein; 67.6 15 0.00032 43.2 7.4 101 379-498 103-229 (722)
276 KOG2337 Ubiquitin activating E 67.1 4.7 0.0001 45.7 3.1 38 381-429 338-375 (669)
277 TIGR01285 nifN nitrogenase mol 67.1 9.9 0.00021 41.5 5.6 96 372-494 300-395 (432)
278 PF13454 NAD_binding_9: FAD-NA 66.7 6.3 0.00014 36.5 3.5 36 387-429 1-36 (156)
279 PRK12828 short chain dehydroge 66.5 13 0.00027 35.0 5.5 36 380-427 4-40 (239)
280 PRK06184 hypothetical protein; 66.4 7.2 0.00016 42.5 4.4 34 382-427 2-35 (502)
281 PRK06249 2-dehydropantoate 2-r 66.4 17 0.00036 37.4 6.8 105 381-502 3-110 (313)
282 KOG1495 Lactate dehydrogenase 66.3 20 0.00043 38.1 7.3 135 379-530 16-168 (332)
283 PRK12409 D-amino acid dehydrog 66.3 7.3 0.00016 40.9 4.3 33 384-428 2-34 (410)
284 cd01489 Uba2_SUMO Ubiquitin ac 66.2 8.1 0.00018 40.8 4.6 32 385-427 1-32 (312)
285 PRK13938 phosphoheptose isomer 66.1 38 0.00082 33.4 8.9 105 382-501 44-151 (196)
286 PF03435 Saccharop_dh: Sacchar 66.1 3.6 7.7E-05 43.3 1.9 91 386-495 1-96 (386)
287 TIGR03693 ocin_ThiF_like putat 66.0 27 0.0006 40.5 8.9 104 343-474 101-215 (637)
288 PTZ00431 pyrroline carboxylate 65.9 23 0.0005 35.6 7.6 106 381-501 1-116 (260)
289 TIGR02279 PaaC-3OHAcCoADH 3-hy 65.7 30 0.00066 38.7 9.1 33 383-427 5-37 (503)
290 PRK05479 ketol-acid reductoiso 65.7 24 0.00051 37.8 7.9 25 380-404 14-38 (330)
291 TIGR01283 nifE nitrogenase mol 65.5 16 0.00036 39.9 6.9 84 371-470 314-402 (456)
292 PRK06847 hypothetical protein; 65.4 8 0.00017 39.7 4.3 22 383-404 4-25 (375)
293 PRK07236 hypothetical protein; 65.4 8.7 0.00019 40.1 4.6 25 381-405 4-28 (386)
294 cd01968 Nitrogenase_NifE_I Nit 65.3 9.8 0.00021 40.8 5.1 84 373-472 277-365 (410)
295 COG1063 Tdh Threonine dehydrog 65.3 13 0.00028 39.2 5.8 99 357-474 143-249 (350)
296 TIGR03169 Nterm_to_SelD pyridi 65.1 4.6 0.0001 41.6 2.5 36 385-429 1-36 (364)
297 PRK06718 precorrin-2 dehydroge 65.0 9.1 0.0002 37.6 4.4 112 380-522 7-122 (202)
298 PRK08163 salicylate hydroxylas 64.7 8 0.00017 40.1 4.2 22 383-404 4-25 (396)
299 TIGR01181 dTDP_gluc_dehyt dTDP 64.7 32 0.00068 33.8 8.2 78 385-474 1-84 (317)
300 PRK02472 murD UDP-N-acetylmura 64.6 24 0.00053 37.7 7.9 35 381-427 3-37 (447)
301 PLN02688 pyrroline-5-carboxyla 64.5 25 0.00055 34.9 7.5 94 385-501 2-98 (266)
302 TIGR01757 Malate-DH_plant mala 64.5 34 0.00073 37.4 8.9 135 383-529 44-200 (387)
303 PRK06719 precorrin-2 dehydroge 64.4 9.8 0.00021 35.9 4.4 35 380-426 10-44 (157)
304 PRK09126 hypothetical protein; 64.1 8.2 0.00018 40.0 4.1 22 383-404 3-24 (392)
305 PRK05866 short chain dehydroge 64.1 17 0.00038 36.7 6.4 38 378-427 35-73 (293)
306 PRK05993 short chain dehydroge 63.9 18 0.00039 35.8 6.3 99 384-498 5-135 (277)
307 PRK12429 3-hydroxybutyrate deh 63.7 16 0.00036 34.9 5.8 35 381-427 2-37 (258)
308 KOG2304 3-hydroxyacyl-CoA dehy 63.5 6 0.00013 41.0 2.9 32 384-427 12-43 (298)
309 COG0499 SAM1 S-adenosylhomocys 63.5 26 0.00056 38.5 7.7 120 356-510 185-306 (420)
310 PRK09564 coenzyme A disulfide 63.5 9.5 0.00021 40.6 4.6 36 384-429 1-36 (444)
311 PRK07364 2-octaprenyl-6-methox 63.4 7.9 0.00017 40.4 3.9 22 383-404 18-39 (415)
312 PRK13512 coenzyme A disulfide 62.9 7.4 0.00016 41.9 3.6 33 385-427 3-35 (438)
313 COG0569 TrkA K+ transport syst 62.8 13 0.00029 37.0 5.1 99 384-501 1-104 (225)
314 COG1179 Dinucleotide-utilizing 62.6 14 0.0003 38.4 5.3 137 380-530 27-209 (263)
315 PRK12491 pyrroline-5-carboxyla 62.6 38 0.00083 34.6 8.6 35 384-426 3-37 (272)
316 PRK12771 putative glutamate sy 62.6 14 0.00031 41.2 5.9 35 381-427 135-169 (564)
317 PRK04176 ribulose-1,5-biphosph 62.5 9.3 0.0002 38.7 4.1 34 383-428 25-58 (257)
318 PF01266 DAO: FAD dependent ox 62.4 10 0.00023 37.5 4.4 31 385-427 1-31 (358)
319 PRK05732 2-octaprenyl-6-methox 62.4 11 0.00023 39.0 4.6 37 382-427 2-38 (395)
320 TIGR01790 carotene-cycl lycope 62.2 8.8 0.00019 39.8 3.9 31 386-428 2-32 (388)
321 COG0578 GlpA Glycerol-3-phosph 61.7 22 0.00049 40.4 7.2 88 382-499 11-102 (532)
322 PLN02172 flavin-containing mon 61.7 11 0.00024 41.4 4.8 25 380-404 7-31 (461)
323 PRK03515 ornithine carbamoyltr 61.4 58 0.0013 34.9 9.9 115 341-471 113-233 (336)
324 COG0644 FixC Dehydrogenases (f 61.3 10 0.00022 40.2 4.3 37 383-431 3-39 (396)
325 PRK07233 hypothetical protein; 61.2 8.9 0.00019 39.9 3.8 31 385-427 1-31 (434)
326 PLN02240 UDP-glucose 4-epimera 61.2 21 0.00045 36.3 6.4 106 380-497 2-131 (352)
327 PRK12570 N-acetylmuramic acid- 61.1 31 0.00068 36.0 7.7 37 463-501 127-165 (296)
328 TIGR01470 cysG_Nterm siroheme 61.1 12 0.00025 36.9 4.4 36 380-427 6-41 (205)
329 PRK06475 salicylate hydroxylas 61.0 9.2 0.0002 40.2 3.9 21 384-404 3-23 (400)
330 TIGR01505 tartro_sem_red 2-hyd 60.9 28 0.0006 35.3 7.1 31 385-427 1-31 (291)
331 PRK12829 short chain dehydroge 60.4 23 0.0005 34.1 6.2 36 380-427 8-44 (264)
332 PLN02268 probable polyamine ox 60.2 4.4 9.5E-05 42.9 1.4 30 385-419 2-33 (435)
333 PRK05749 3-deoxy-D-manno-octul 60.0 31 0.00067 36.4 7.6 38 453-495 311-349 (425)
334 TIGR02818 adh_III_F_hyde S-(hy 59.9 49 0.0011 34.5 9.0 37 379-426 182-218 (368)
335 PLN02695 GDP-D-mannose-3',5'-e 59.5 32 0.0007 36.2 7.6 97 382-498 20-137 (370)
336 TIGR02032 GG-red-SF geranylger 59.4 11 0.00025 36.5 4.0 32 385-428 2-33 (295)
337 cd01979 Pchlide_reductase_N Pc 59.3 28 0.0006 37.4 7.2 83 371-469 264-351 (396)
338 TIGR00441 gmhA phosphoheptose 59.1 66 0.0014 29.9 8.8 37 463-501 79-117 (154)
339 PRK12769 putative oxidoreducta 58.9 12 0.00026 42.7 4.6 34 382-427 326-359 (654)
340 PRK04965 NADH:flavorubredoxin 58.9 9.6 0.00021 39.8 3.5 35 384-428 3-37 (377)
341 KOG1370 S-adenosylhomocysteine 58.8 36 0.00078 36.9 7.6 117 375-521 206-338 (434)
342 cd05006 SIS_GmhA Phosphoheptos 58.7 61 0.0013 30.5 8.6 34 463-499 101-136 (177)
343 PRK06753 hypothetical protein; 58.4 12 0.00025 38.6 4.1 20 385-404 2-21 (373)
344 PLN00093 geranylgeranyl diphos 58.3 11 0.00024 41.2 4.1 26 379-404 33-60 (450)
345 PRK07417 arogenate dehydrogena 58.3 51 0.0011 33.5 8.5 31 385-427 2-32 (279)
346 PRK08507 prephenate dehydrogen 58.3 33 0.00072 34.6 7.2 33 385-427 2-34 (275)
347 PRK12810 gltD glutamate syntha 58.0 13 0.00028 40.6 4.4 34 382-427 142-175 (471)
348 PLN02427 UDP-apiose/xylose syn 57.9 36 0.00078 35.6 7.6 84 374-474 5-97 (386)
349 PRK07589 ornithine cyclodeamin 57.8 1E+02 0.0022 33.1 11.0 103 383-510 129-238 (346)
350 TIGR01316 gltA glutamate synth 57.8 14 0.00031 40.0 4.8 36 380-427 130-165 (449)
351 PRK01438 murD UDP-N-acetylmura 57.7 16 0.00035 39.6 5.1 29 376-404 9-37 (480)
352 PRK07045 putative monooxygenas 57.7 13 0.00027 38.8 4.2 22 384-405 6-27 (388)
353 PRK07424 bifunctional sterol d 57.5 18 0.00038 39.5 5.4 55 346-427 156-211 (406)
354 PRK06138 short chain dehydroge 57.5 23 0.0005 33.8 5.7 36 380-427 2-38 (252)
355 PRK06841 short chain dehydroge 57.5 22 0.00047 34.3 5.5 36 380-427 12-48 (255)
356 PRK13394 3-hydroxybutyrate deh 57.2 37 0.00081 32.6 7.1 36 380-427 4-40 (262)
357 PRK07608 ubiquinone biosynthes 57.2 12 0.00026 38.6 3.9 32 384-427 6-37 (388)
358 PRK07251 pyridine nucleotide-d 57.1 13 0.00029 39.6 4.4 34 383-428 3-36 (438)
359 COG2072 TrkA Predicted flavopr 57.0 14 0.00031 40.4 4.6 36 382-428 7-42 (443)
360 PRK09987 dTDP-4-dehydrorhamnos 56.9 48 0.001 33.6 8.1 86 385-498 2-104 (299)
361 PRK07067 sorbitol dehydrogenas 56.9 14 0.0003 35.8 4.0 78 380-473 3-90 (257)
362 TIGR03026 NDP-sugDHase nucleot 56.9 38 0.00083 36.4 7.7 31 385-427 2-32 (411)
363 PRK12779 putative bifunctional 56.8 15 0.00032 44.3 5.0 40 381-432 304-347 (944)
364 KOG2018 Predicted dinucleotide 56.8 12 0.00027 40.3 3.9 40 379-429 70-109 (430)
365 COG0654 UbiH 2-polyprenyl-6-me 56.3 14 0.00031 38.8 4.4 41 383-435 2-44 (387)
366 COG0476 ThiF Dinucleotide-util 56.1 10 0.00022 37.9 3.1 39 378-427 25-63 (254)
367 PRK10157 putative oxidoreducta 56.0 13 0.00027 40.1 4.0 21 384-404 6-26 (428)
368 TIGR01984 UbiH 2-polyprenyl-6- 56.0 12 0.00025 38.7 3.5 20 386-405 2-21 (382)
369 TIGR00292 thiazole biosynthesi 56.0 14 0.0003 37.5 4.0 37 382-430 20-56 (254)
370 PRK12266 glpD glycerol-3-phosp 55.9 13 0.00028 41.1 4.1 33 384-428 7-39 (508)
371 PRK09186 flagellin modificatio 55.9 15 0.00032 35.4 4.0 35 381-427 2-37 (256)
372 PRK08849 2-octaprenyl-3-methyl 55.7 15 0.00032 38.5 4.3 22 383-404 3-24 (384)
373 PRK07523 gluconate 5-dehydroge 55.7 38 0.00083 32.7 6.9 36 380-427 7-43 (255)
374 PF13450 NAD_binding_8: NAD(P) 55.6 17 0.00036 29.6 3.7 31 388-430 1-31 (68)
375 PTZ00318 NADH dehydrogenase-li 55.6 12 0.00026 40.1 3.7 36 380-427 7-42 (424)
376 PRK08013 oxidoreductase; Provi 55.6 14 0.00031 38.8 4.3 33 383-427 3-35 (400)
377 PLN02463 lycopene beta cyclase 55.4 13 0.00029 40.8 4.0 32 384-427 29-60 (447)
378 PRK06392 homoserine dehydrogen 55.4 45 0.00098 35.4 7.8 83 385-472 2-90 (326)
379 TIGR03589 PseB UDP-N-acetylglu 55.2 34 0.00074 35.1 6.8 106 381-498 2-125 (324)
380 PRK06182 short chain dehydroge 55.2 23 0.00051 34.7 5.4 74 382-474 2-85 (273)
381 PRK08773 2-octaprenyl-3-methyl 55.1 13 0.00029 38.7 3.9 34 383-428 6-39 (392)
382 PRK14806 bifunctional cyclohex 54.9 30 0.00066 39.8 7.0 83 384-488 4-86 (735)
383 TIGR01179 galE UDP-glucose-4-e 54.9 56 0.0012 32.2 8.0 97 385-496 1-119 (328)
384 PRK11749 dihydropyrimidine deh 54.8 15 0.00033 39.7 4.4 34 382-427 139-172 (457)
385 PRK06416 dihydrolipoamide dehy 54.7 14 0.0003 39.7 4.0 33 384-428 5-37 (462)
386 PF01946 Thi4: Thi4 family; PD 54.6 18 0.00038 37.1 4.5 36 383-430 17-52 (230)
387 PRK08192 aspartate carbamoyltr 54.6 3E+02 0.0066 29.5 14.1 109 346-474 118-237 (338)
388 TIGR00658 orni_carb_tr ornithi 54.6 90 0.002 32.8 9.8 113 341-471 107-224 (304)
389 TIGR01988 Ubi-OHases Ubiquinon 54.4 14 0.0003 37.8 3.8 31 386-428 2-32 (385)
390 PLN02676 polyamine oxidase 54.3 34 0.00073 37.9 7.0 24 382-405 25-48 (487)
391 KOG0743 AAA+-type ATPase [Post 54.3 18 0.00038 40.4 4.7 104 251-391 241-345 (457)
392 PF01408 GFO_IDH_MocA: Oxidore 54.2 22 0.00048 30.5 4.5 90 385-495 2-91 (120)
393 PLN02350 phosphogluconate dehy 54.2 41 0.00088 37.9 7.6 97 385-501 8-110 (493)
394 TIGR01789 lycopene_cycl lycope 54.1 19 0.00041 38.2 4.8 36 386-431 2-37 (370)
395 PRK08020 ubiF 2-octaprenyl-3-m 54.0 14 0.0003 38.4 3.8 33 383-427 5-37 (391)
396 PRK07588 hypothetical protein; 54.0 15 0.00033 38.2 4.1 21 384-404 1-21 (391)
397 PRK12562 ornithine carbamoyltr 53.9 1E+02 0.0022 33.0 10.2 114 340-471 112-233 (334)
398 PLN02852 ferredoxin-NADP+ redu 53.9 13 0.00028 41.6 3.7 40 378-427 21-60 (491)
399 cd00377 ICL_PEPM Members of th 53.8 2.5E+02 0.0055 28.4 15.8 44 477-524 183-226 (243)
400 PRK08244 hypothetical protein; 53.7 15 0.00033 39.9 4.2 21 384-404 3-23 (493)
401 PRK11259 solA N-methyltryptoph 53.7 17 0.00036 37.3 4.3 34 383-428 3-36 (376)
402 PRK06185 hypothetical protein; 53.6 15 0.00033 38.3 4.0 34 383-428 6-39 (407)
403 PRK13301 putative L-aspartate 53.5 27 0.00058 36.5 5.7 117 384-525 3-123 (267)
404 PRK02102 ornithine carbamoyltr 53.1 1E+02 0.0022 33.0 10.0 114 339-471 112-232 (331)
405 PRK08294 phenol 2-monooxygenas 53.1 14 0.00031 42.2 4.0 43 382-435 31-74 (634)
406 cd08301 alcohol_DH_plants Plan 53.0 76 0.0016 32.8 9.0 36 381-427 186-221 (369)
407 cd01493 APPBP1_RUB Ubiquitin a 53.0 15 0.00033 40.3 4.0 38 379-427 16-53 (425)
408 COG1748 LYS9 Saccharopine dehy 52.8 25 0.00054 38.5 5.5 85 384-487 2-90 (389)
409 PRK05441 murQ N-acetylmuramic 52.6 58 0.0013 34.0 8.0 37 463-501 131-169 (299)
410 TIGR01377 soxA_mon sarcosine o 52.6 17 0.00037 37.3 4.1 33 385-429 2-34 (380)
411 TIGR01373 soxB sarcosine oxida 52.6 21 0.00046 37.4 4.9 38 382-429 29-66 (407)
412 PRK13403 ketol-acid reductoiso 52.5 32 0.00069 37.1 6.2 64 379-468 12-76 (335)
413 PRK05714 2-octaprenyl-3-methyl 52.5 14 0.0003 38.8 3.5 31 385-427 4-34 (405)
414 PRK12778 putative bifunctional 52.3 20 0.00043 41.6 5.0 35 381-427 429-463 (752)
415 PRK00536 speE spermidine synth 52.2 23 0.00051 36.6 5.0 84 384-486 74-158 (262)
416 PF02254 TrkA_N: TrkA-N domain 52.1 12 0.00026 32.1 2.5 98 386-501 1-100 (116)
417 PRK04284 ornithine carbamoyltr 52.0 1E+02 0.0022 32.9 9.8 111 343-471 115-232 (332)
418 PRK08850 2-octaprenyl-6-methox 52.0 18 0.0004 38.0 4.3 33 383-427 4-36 (405)
419 PRK08243 4-hydroxybenzoate 3-m 52.0 18 0.00039 37.9 4.3 22 383-404 2-23 (392)
420 PRK11559 garR tartronate semia 51.9 57 0.0012 33.0 7.7 32 384-427 3-34 (296)
421 PRK10262 thioredoxin reductase 51.9 15 0.00032 37.4 3.5 24 381-404 4-27 (321)
422 cd01976 Nitrogenase_MoFe_alpha 51.8 35 0.00077 37.1 6.6 87 370-472 287-378 (421)
423 PF00743 FMO-like: Flavin-bind 51.8 17 0.00036 41.0 4.1 32 384-427 2-33 (531)
424 TIGR00031 UDP-GALP_mutase UDP- 51.8 18 0.00039 39.1 4.3 31 385-427 3-33 (377)
425 PLN02653 GDP-mannose 4,6-dehyd 51.7 62 0.0013 33.0 8.0 82 380-473 3-93 (340)
426 PRK08219 short chain dehydroge 51.7 64 0.0014 30.2 7.5 71 384-474 4-82 (227)
427 PRK09853 putative selenate red 51.7 18 0.00039 44.1 4.6 35 381-427 537-571 (1019)
428 PTZ00245 ubiquitin activating 51.6 14 0.00031 38.8 3.3 39 379-428 22-60 (287)
429 PRK12831 putative oxidoreducta 51.6 19 0.00041 39.4 4.5 34 382-427 139-172 (464)
430 TIGR00274 N-acetylmuramic acid 51.5 29 0.00063 36.2 5.6 38 463-502 126-165 (291)
431 PRK11101 glpA sn-glycerol-3-ph 51.4 18 0.00038 40.5 4.3 33 383-427 6-38 (546)
432 PRK00141 murD UDP-N-acetylmura 51.1 20 0.00044 39.3 4.6 25 380-404 12-36 (473)
433 CHL00076 chlB photochlorophyll 51.1 24 0.00052 39.6 5.2 79 379-471 301-382 (513)
434 PRK07538 hypothetical protein; 51.0 18 0.00038 38.3 4.0 20 385-404 2-21 (413)
435 PRK12814 putative NADPH-depend 50.8 19 0.00041 41.3 4.4 34 382-427 192-225 (652)
436 COG1893 ApbA Ketopantoate redu 50.8 44 0.00096 35.0 6.9 100 384-505 1-108 (307)
437 PRK09490 metH B12-dependent me 50.7 96 0.0021 38.9 10.5 120 315-477 441-572 (1229)
438 PRK13369 glycerol-3-phosphate 50.7 17 0.00036 40.0 3.9 32 384-427 7-38 (502)
439 PRK09466 metL bifunctional asp 50.5 43 0.00093 39.9 7.4 107 382-495 457-570 (810)
440 PRK12416 protoporphyrinogen ox 50.4 11 0.00024 40.4 2.4 47 384-430 2-55 (463)
441 KOG2012 Ubiquitin activating e 50.3 11 0.00024 44.8 2.6 132 347-521 412-552 (1013)
442 cd01490 Ube1_repeat2 Ubiquitin 50.2 20 0.00044 39.7 4.4 37 385-427 1-37 (435)
443 PRK07333 2-octaprenyl-6-methox 49.9 16 0.00035 37.9 3.5 21 385-405 3-23 (403)
444 TIGR01282 nifD nitrogenase mol 49.9 48 0.001 36.8 7.3 136 316-472 268-413 (466)
445 cd04951 GT1_WbdM_like This fam 49.9 1.4E+02 0.0031 29.4 10.0 37 454-495 255-291 (360)
446 PRK01747 mnmC bifunctional tRN 49.8 21 0.00045 40.8 4.6 33 384-428 261-293 (662)
447 PRK12770 putative glutamate sy 49.8 22 0.00047 37.0 4.4 34 382-427 17-50 (352)
448 PRK07494 2-octaprenyl-6-methox 49.8 20 0.00044 37.2 4.2 34 383-428 7-40 (388)
449 TIGR02053 MerA mercuric reduct 49.7 19 0.00041 38.8 4.1 30 386-427 3-32 (463)
450 COG0673 MviM Predicted dehydro 49.7 43 0.00093 34.0 6.4 43 451-495 55-102 (342)
451 COG1252 Ndh NADH dehydrogenase 49.4 17 0.00036 40.0 3.6 35 383-427 3-37 (405)
452 PLN02568 polyamine oxidase 49.3 12 0.00025 42.2 2.5 24 382-405 4-27 (539)
453 PRK00711 D-amino acid dehydrog 49.3 21 0.00045 37.4 4.2 31 385-427 2-32 (416)
454 TIGR03315 Se_ygfK putative sel 49.3 19 0.00041 43.8 4.4 33 383-427 537-569 (1012)
455 TIGR01317 GOGAT_sm_gam glutama 49.2 22 0.00048 39.2 4.5 34 382-427 142-175 (485)
456 PRK06124 gluconate 5-dehydroge 49.1 77 0.0017 30.5 7.8 39 378-427 6-44 (256)
457 PRK11154 fadJ multifunctional 49.0 1.8E+02 0.0038 34.1 11.9 32 384-426 310-341 (708)
458 PRK11445 putative oxidoreducta 48.9 20 0.00043 37.2 4.0 20 385-404 3-22 (351)
459 PRK07478 short chain dehydroge 48.9 53 0.0012 31.7 6.7 36 380-427 3-39 (254)
460 TIGR01350 lipoamide_DH dihydro 48.8 21 0.00045 38.3 4.2 30 385-426 3-32 (461)
461 PRK06545 prephenate dehydrogen 48.7 50 0.0011 35.0 6.9 22 384-405 1-22 (359)
462 PRK11728 hydroxyglutarate oxid 48.5 20 0.00043 37.6 3.9 34 384-427 3-36 (393)
463 PRK10015 oxidoreductase; Provi 48.5 20 0.00043 38.8 4.0 32 384-427 6-37 (429)
464 PRK06834 hypothetical protein; 48.5 22 0.00048 39.2 4.4 35 382-428 2-36 (488)
465 PRK06292 dihydrolipoamide dehy 48.5 23 0.0005 38.0 4.4 33 383-427 3-35 (460)
466 COG1250 FadB 3-hydroxyacyl-CoA 48.4 63 0.0014 34.3 7.6 32 384-427 4-35 (307)
467 PRK14694 putative mercuric red 48.4 23 0.0005 38.4 4.5 34 382-427 5-38 (468)
468 PRK06912 acoL dihydrolipoamide 48.2 20 0.00044 38.7 4.0 31 385-427 2-32 (458)
469 PRK05868 hypothetical protein; 48.1 22 0.00047 37.4 4.1 21 384-404 2-22 (372)
470 PRK05976 dihydrolipoamide dehy 48.1 23 0.00049 38.5 4.4 33 383-427 4-36 (472)
471 PRK08132 FAD-dependent oxidore 48.0 21 0.00045 39.5 4.2 22 383-404 23-44 (547)
472 TIGR03736 PRTRC_ThiF PRTRC sys 48.0 29 0.00062 35.6 4.8 45 382-429 10-56 (244)
473 COG3349 Uncharacterized conser 47.9 10 0.00022 42.5 1.8 44 384-432 1-51 (485)
474 TIGR03143 AhpF_homolog putativ 47.9 20 0.00043 40.2 4.0 32 385-428 6-37 (555)
475 PLN02342 ornithine carbamoyltr 47.7 1.4E+02 0.003 32.3 10.1 125 322-471 137-267 (348)
476 TIGR02360 pbenz_hydroxyl 4-hyd 47.6 23 0.0005 37.4 4.3 21 384-404 3-23 (390)
477 COG3288 PntA NAD/NADP transhyd 47.5 24 0.00052 38.0 4.2 52 454-510 237-294 (356)
478 PRK14852 hypothetical protein; 47.5 18 0.00038 44.0 3.6 39 379-428 328-366 (989)
479 PRK00048 dihydrodipicolinate r 47.4 1.2E+02 0.0026 30.7 9.2 88 384-496 2-90 (257)
480 PRK09897 hypothetical protein; 47.4 25 0.00053 39.8 4.6 33 385-427 3-35 (534)
481 PF13407 Peripla_BP_4: Peripla 47.4 59 0.0013 31.1 6.7 145 205-379 52-206 (257)
482 PLN02657 3,8-divinyl protochlo 47.2 78 0.0017 33.8 8.2 107 377-495 54-179 (390)
483 PRK11730 fadB multifunctional 47.2 21 0.00045 41.6 4.1 32 384-427 314-345 (715)
484 TIGR01692 HIBADH 3-hydroxyisob 47.1 56 0.0012 33.2 6.8 28 388-427 1-28 (288)
485 PRK04690 murD UDP-N-acetylmura 47.0 24 0.00052 38.7 4.4 24 381-404 6-29 (468)
486 TIGR03325 BphB_TodD cis-2,3-di 46.9 25 0.00054 34.3 4.1 36 380-427 2-38 (262)
487 cd05279 Zn_ADH1 Liver alcohol 46.8 1.8E+02 0.0038 30.2 10.5 38 378-426 179-216 (365)
488 cd01974 Nitrogenase_MoFe_beta 46.8 23 0.0005 38.5 4.2 103 372-501 292-405 (435)
489 TIGR03364 HpnW_proposed FAD de 46.8 23 0.0005 36.4 4.0 31 385-427 2-32 (365)
490 PRK08010 pyridine nucleotide-d 46.7 24 0.00052 37.8 4.3 32 384-427 4-35 (441)
491 PRK06126 hypothetical protein; 46.5 26 0.00055 38.7 4.5 34 382-427 6-39 (545)
492 PRK07774 short chain dehydroge 46.2 35 0.00075 32.7 4.9 36 380-427 3-39 (250)
493 CHL00194 ycf39 Ycf39; Provisio 45.8 60 0.0013 33.0 6.8 94 385-496 2-108 (317)
494 PF12831 FAD_oxidored: FAD dep 45.7 25 0.00054 38.0 4.2 33 386-430 2-34 (428)
495 PRK08265 short chain dehydroge 45.6 26 0.00057 34.3 4.0 36 380-427 3-39 (261)
496 PRK06200 2,3-dihydroxy-2,3-dih 45.6 27 0.00059 34.0 4.1 36 380-427 3-39 (263)
497 PRK06183 mhpA 3-(3-hydroxyphen 45.5 24 0.00053 38.9 4.2 23 382-404 9-31 (538)
498 PRK12823 benD 1,6-dihydroxycyc 45.4 57 0.0012 31.5 6.3 37 379-427 4-41 (260)
499 PRK07190 hypothetical protein; 45.3 26 0.00056 38.7 4.4 33 383-427 5-37 (487)
500 cd01971 Nitrogenase_VnfN_like 45.3 82 0.0018 34.2 8.1 40 366-412 279-318 (427)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.9e-189 Score=1483.54 Aligned_cols=460 Identities=63% Similarity=1.048 Sum_probs=447.2
Q ss_pred ccCCCCcCCCCCCccc-ccccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhH
Q 009138 82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK 160 (542)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K 160 (542)
.++++..+..+...+| ..++.+|+++|+||+||||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k 87 (582)
T KOG1257|consen 8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK 87 (582)
T ss_pred cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence 3334444433444455 566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhchhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEe
Q 009138 161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT 240 (542)
Q Consensus 161 y~~L~~L~~~Ne~LFY~ll~~~~ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVT 240 (542)
|+||++||+|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||
T Consensus 88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT 167 (582)
T KOG1257|consen 88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT 167 (582)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeccCCCCCCccccchhhhhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHH
Q 009138 241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA 320 (542)
Q Consensus 241 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~a 320 (542)
||+|||||||||++|||||+||++||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+|
T Consensus 168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A 247 (582)
T KOG1257|consen 168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA 247 (582)
T ss_pred CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeeecCCCccHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 009138 321 VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (542)
Q Consensus 321 v~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ 400 (542)
|.++|||+++||||||+++|||++|+|||++||||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+
T Consensus 248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~ 327 (582)
T KOG1257|consen 248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN 327 (582)
T ss_pred HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHH
Q 009138 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKE 480 (542)
Q Consensus 401 ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Ftee 480 (542)
||+.+|+++ |+|+|||++||||+|++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|++||+||||
T Consensus 328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Ftee 406 (582)
T KOG1257|consen 328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEE 406 (582)
T ss_pred HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHH
Confidence 999999995 9999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCCCCCCcccCCEEEcccCC
Q 009138 481 VVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQV 542 (542)
Q Consensus 481 vv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASGspf~pv~~~g~~~~pgQ~ 542 (542)
|||+|+++|||||||||||||+++||||||||+||+|||||||||||+||++|||+|+||||
T Consensus 407 vl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~ 468 (582)
T KOG1257|consen 407 VLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQG 468 (582)
T ss_pred HHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-179 Score=1429.52 Aligned_cols=440 Identities=50% Similarity=0.874 Sum_probs=433.0
Q ss_pred ccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhHHHHHHHH
Q 009138 100 SVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLL 179 (542)
Q Consensus 100 ~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ll 179 (542)
+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+|
T Consensus 13 ~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll 92 (563)
T PRK13529 13 TPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLL 92 (563)
T ss_pred ecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCcceeccCCCCCCccccc
Q 009138 180 IDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIP 259 (542)
Q Consensus 180 ~~~~ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~ 259 (542)
++|+||+||||||||||+|||+||++||+|+|||||++|+|+|.++|+|||.++|++||||||||||||||||++|||||
T Consensus 93 ~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~ 172 (563)
T PRK13529 93 SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIP 172 (563)
T ss_pred HhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCc
Q 009138 260 VGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANH 339 (542)
Q Consensus 260 iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~ 339 (542)
|||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||++|+.+| |+++||||||+++
T Consensus 173 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~ 251 (563)
T PRK13529 173 IGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK 251 (563)
T ss_pred ccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccC
Q 009138 340 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (542)
Q Consensus 340 nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~ 419 (542)
|||++|+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+++|++ +|+++|||++
T Consensus 252 ~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~ 330 (563)
T PRK13529 252 NARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARK 330 (563)
T ss_pred hHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 5999999999
Q ss_pred eEEEEcccccccCCCccCCchhchhhccccCCC---------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCC
Q 009138 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNE 490 (542)
Q Consensus 420 ~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~---------~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~e 490 (542)
+||+||++|||+++|.+ |+++|++||++.++. .+|+|||+++|||||||+|+++|+||||||++|+++||
T Consensus 331 ~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~e 409 (563)
T PRK13529 331 RFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCE 409 (563)
T ss_pred eEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC
Confidence 99999999999999975 999999999975543 69999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCCCCCCcccCCEEEcccCC
Q 009138 491 KPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQV 542 (542)
Q Consensus 491 rPIIFaLSNPt~~aEct~edA~~wt~GraIfASGspf~pv~~~g~~~~pgQ~ 542 (542)
|||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||
T Consensus 410 rPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~ 461 (563)
T PRK13529 410 RPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQC 461 (563)
T ss_pred CCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcC
Confidence 9999999999999999999999999999999999999999999999999997
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.5e-178 Score=1426.35 Aligned_cols=443 Identities=51% Similarity=0.854 Sum_probs=434.8
Q ss_pred ccccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhHHHHHH
Q 009138 98 SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177 (542)
Q Consensus 98 ~~~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ 177 (542)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCcceeccCCCCCCccc
Q 009138 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMG 257 (542)
Q Consensus 178 ll~~~~ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 257 (542)
++++|+|||||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCceeeeecCC
Q 009138 258 IPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 337 (542)
Q Consensus 258 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~ 337 (542)
||+||++|||+||||||++|||||||+|||||+||+||+|||+||+|++|+||++|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhc
Q 009138 338 NHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417 (542)
Q Consensus 338 ~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA 417 (542)
++|||++|+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 69999999
Q ss_pred cCeEEEEcccccccCCCccCCchhchhhcccc--CC---CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCc
Q 009138 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP---VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKP 492 (542)
Q Consensus 418 r~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~--~~---~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erP 492 (542)
++|||+||++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+||||||++|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999974 33 57999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCCCCCCcccCCEEEcccCC
Q 009138 493 IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQV 542 (542)
Q Consensus 493 IIFaLSNPt~~aEct~edA~~wt~GraIfASGspf~pv~~~g~~~~pgQ~ 542 (542)
|||||||||++|||||||||+||+|||||||||||+||+|||++++||||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~ 460 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQG 460 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcC
Confidence 99999999999999999999999999999999999999999999999997
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.8e-178 Score=1430.47 Aligned_cols=442 Identities=73% Similarity=1.180 Sum_probs=436.9
Q ss_pred cccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhHHHHHHHHh
Q 009138 101 VASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLI 180 (542)
Q Consensus 101 ~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ll~ 180 (542)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCcceeccCCCCCCccccch
Q 009138 181 DNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPV 260 (542)
Q Consensus 181 ~~~ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 260 (542)
+|++|+||||||||||+||++||++||+|+|||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCcc
Q 009138 261 GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHN 340 (542)
Q Consensus 261 GKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~n 340 (542)
||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCe
Q 009138 341 AFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (542)
Q Consensus 341 Af~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~ 420 (542)
||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009138 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 421 i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (542)
||+||++|||+++|.++|+++|++||++.++..+|+|||+++|||||||+|+++|+||||||++|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEeCCCCCCcccCCEEEcccCC
Q 009138 501 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQV 542 (542)
Q Consensus 501 t~~aEct~edA~~wt~GraIfASGspf~pv~~~g~~~~pgQ~ 542 (542)
|++|||||||||+||+|+|||||||||+||+|+|++++||||
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~ 480 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQA 480 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccc
Confidence 999999999999999999999999999999999999999997
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=7.6e-99 Score=784.93 Aligned_cols=334 Identities=37% Similarity=0.590 Sum_probs=305.7
Q ss_pred cccHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHhhHHHHHHHHhhchhccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 009138 137 VISQELQVKKMLHNIRQYQV-PLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFIS 215 (542)
Q Consensus 137 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~LFY~ll~~~~ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis 215 (542)
++|+| |.+|++.++..+.+ +|++|.|+ .+|+.+||.++-.|..|+|||+||||||++|++|++.++.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 56889 99999999999888 99999999 899999999999999999999999999999999998777763
Q ss_pred ccCcchHHHHHhcCCCCCceEEEEecCcceeccCCCC-CCccccchhhhhhHhhhCCCCCCCeeeEEeecCCCccccccC
Q 009138 216 LKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294 (542)
Q Consensus 216 ~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~D 294 (542)
.++.+++.|||||||||||||||+| ..||||||||++|||+||||| +|||+||+||+||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 4567777999999999999999999 568999999999999999999 9999999999887
Q ss_pred cccccccccccchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHHHHHH--HcCCCceeecCCcchHHHHHHHHHH
Q 009138 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEK--YGTTHLVFNDDIQGTASVVLAGLIS 372 (542)
Q Consensus 295 p~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~lL~r--yr~~~~~FNDDiQGTaaVvLAgll~ 372 (542)
+++||+++.++||. |++||++.|.||.++++ ||.+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 99999999999988 88888888999887765 5579999999999999999999999
Q ss_pred HHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCcc-CCchhchhhcc-ccC
Q 009138 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAH-EHE 450 (542)
Q Consensus 373 Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~-~l~~~k~~fA~-~~~ 450 (542)
|+|++|++|+|+||||+|||+||+|||++|..++++ ++|||+||++|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999987543 3799999999999999975 36778888885 444
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCCCCCCc
Q 009138 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPF 530 (542)
Q Consensus 451 ~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASGspf~pv 530 (542)
...+ .+++. +||||||+|++ |+||+|+|++|+ ++|||||||||| ||++||||.+|++|++|+||||||+||
T Consensus 260 ~~~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrsd~Pn 330 (432)
T COG0281 260 ERTL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGRSDYPN 330 (432)
T ss_pred cccc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCCCCcc
Confidence 4443 44555 59999999998 899999999999 569999999999 999999999999999999999999999
Q ss_pred ccCCEEEccc
Q 009138 531 EYGDNVFVPG 540 (542)
Q Consensus 531 ~~~g~~~~pg 540 (542)
|+||...|||
T Consensus 331 QvNNvL~FPg 340 (432)
T COG0281 331 QVNNVLIFPG 340 (432)
T ss_pred cccceeEcch
Confidence 9999999998
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=2.8e-92 Score=783.71 Aligned_cols=291 Identities=29% Similarity=0.532 Sum_probs=271.1
Q ss_pred hccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCcceeccCCCCCCc-cccchhh
Q 009138 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (542)
Q Consensus 184 ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (542)
.+.|+++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 355999999999999999 889999987 5667777899999999999999999997 9999999
Q ss_pred hhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHH
Q 009138 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF 342 (542)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf 342 (542)
++|||+||||| + +|+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid---~----~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---V----FDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---c----cccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 5 4555555 577 7888 999999999987 999999999999
Q ss_pred HHHHHHcC--CCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCe
Q 009138 343 DLLEKYGT--THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (542)
Q Consensus 343 ~lL~ryr~--~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~ 420 (542)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 799999999999999999999999999999999999999999999999999976 498754 9
Q ss_pred EEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009138 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 421 i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (542)
||+||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEeCCCCCCcccCCEEEccc
Q 009138 501 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPG 540 (542)
Q Consensus 501 t~~aEct~edA~~wt~GraIfASGspf~pv~~~g~~~~pg 540 (542)
| |||+||||++ |+|++|||||+++.|+|.||...|||
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTGrs~~pnQ~NN~l~FPg 327 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATGRSDYPNQVNNVLCFPY 327 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeCCcCCCCccceeeecch
Confidence 9 8999999987 99999999999999999999999998
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2.5e-91 Score=779.09 Aligned_cols=290 Identities=27% Similarity=0.482 Sum_probs=270.9
Q ss_pred hccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCcceeccCCCCCCc-cccchhh
Q 009138 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (542)
Q Consensus 184 ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (542)
.+.|+++|||||+++|++ |+++|+++| .|+.+.+.|||||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 355999999999999999 789998888 6788889999999999999999999996 9999999
Q ss_pred hhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCC-ceeeeecCCCccH
Q 009138 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER-ILIQFEDFANHNA 341 (542)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~-~lIqfEDf~~~nA 341 (542)
++|||+||||| ++|||+| |+ || ||||++|+..| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 6666555 44 55 88888888888 77 7899999999999
Q ss_pred HHHHHHHcCC--CceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccC
Q 009138 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (542)
Q Consensus 342 f~lL~ryr~~--~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~ 419 (542)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 99999999999999999999999999999999999999999999999999987 48874 7
Q ss_pred eEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 420 ~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
||||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 45799999998 999999999 8999999999998 8999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEeCCCCCCcccCCEEEccc
Q 009138 500 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPG 540 (542)
Q Consensus 500 Pt~~aEct~edA~~wt~GraIfASGspf~pv~~~g~~~~pg 540 (542)
|| |||+|||||+||+| +|||||+++.|+|.||...|||
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atGrs~~p~Q~NN~~~FPg 331 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATGRSDYPNQVNNVLCFPY 331 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEECCcCCCCcccceeeccc
Confidence 99 89999999999999 9999999999999999999998
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1.7e-90 Score=769.50 Aligned_cols=290 Identities=30% Similarity=0.510 Sum_probs=269.1
Q ss_pred hccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCcceeccCCCCCC-ccccchhh
Q 009138 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH-GMGIPVGK 262 (542)
Q Consensus 184 ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 262 (542)
.+.|+++|||||+++|++ |+++|+++| ++ +.+++.|+|||||||||||||+|++ ||||||||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~-------------t~~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KY-------------TARGNLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-cc-------------ccCCcEEEEEccchhhccccccccccCccHHHHH
Confidence 356999999999999996 889999999 44 4555679999999999999999999 79999999
Q ss_pred hhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCc-eeeeecCCCccH
Q 009138 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI-LIQFEDFANHNA 341 (542)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~-lIqfEDf~~~nA 341 (542)
++|||+||||| ++|||+| |+ | +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~~~----~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEVD----EE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccccC----CC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 6666555 44 2 799999999999 664 999999999999
Q ss_pred HHHHHHHcCC--CceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccC
Q 009138 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (542)
Q Consensus 342 f~lL~ryr~~--~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~ 419 (542)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999976 4886 68
Q ss_pred eEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 420 ~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
+||+||++|||+++|.+.|+++|++||++ .+..+|+|||++ ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 445799999998 999999999 8999999999998 7999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEeCCCCCCcccCCEEEccc
Q 009138 500 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPG 540 (542)
Q Consensus 500 Pt~~aEct~edA~~wt~GraIfASGspf~pv~~~g~~~~pg 540 (542)
|| |||+|||||+||+| +|||||+++.|+|.||...|||
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atGrs~~pnQ~NN~~~FPg 323 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATGRSDYPNQVNNVLCFPY 323 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEECCcCCCCcccceeecch
Confidence 99 89999999999999 9999999999999999999998
No 9
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.2e-83 Score=611.95 Aligned_cols=182 Identities=63% Similarity=1.184 Sum_probs=164.2
Q ss_pred HHhhHHHHHHHHhhchhccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecCcceec
Q 009138 168 QERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 247 (542)
Q Consensus 168 ~~~Ne~LFY~ll~~~~ee~lpivYTPtVg~aC~~~s~i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 247 (542)
|++||+|||+++.+|+||+||||||||||+||++||++|++|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccchhhhhhHhhhCCCCCCCeeeEEeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCC
Q 009138 248 LGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGE 327 (542)
Q Consensus 248 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp 327 (542)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+||+.+|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCCccHHHHHHHHc
Q 009138 328 RILIQFEDFANHNAFDLLEKYG 349 (542)
Q Consensus 328 ~~lIqfEDf~~~nAf~lL~ryr 349 (542)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=2.7e-69 Score=537.12 Aligned_cols=182 Identities=55% Similarity=0.939 Sum_probs=163.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC
Q 009138 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (542)
Q Consensus 359 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l 438 (542)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++||++||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 899999999999999999999999999999999999999999999999985 9999999999999999999999994 69
Q ss_pred chhchhhccccCCC---CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 009138 439 QHFKKPWAHEHEPV---KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (542)
Q Consensus 439 ~~~k~~fA~~~~~~---~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt 515 (542)
+++|++|||+.++. .+|+|+|+++|||||||+|+++|+||||||++|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCcccCCEEEcccCC
Q 009138 516 QGRAIFASGSPFDPFEYGDNVFVPGQV 542 (542)
Q Consensus 516 ~GraIfASGspf~pv~~~g~~~~pgQ~ 542 (542)
+|+|||||||||+||+|||++++||||
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~ 185 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQC 185 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-
T ss_pred CceEEEecCCccCCeeeCCeEEecCCC
Confidence 999999999999999999999999997
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=3.8e-68 Score=528.51 Aligned_cols=182 Identities=51% Similarity=0.766 Sum_probs=177.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC
Q 009138 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (542)
Q Consensus 359 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l 438 (542)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999965 8
Q ss_pred chhchh---hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 009138 439 QHFKKP---WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (542)
Q Consensus 439 ~~~k~~---fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt 515 (542)
+++|++ |+++.++.++|+|+|+.+|||||||+|+++|+||||||++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCcccCCEEEcccCC
Q 009138 516 QGRAIFASGSPFDPFEYGDNVFVPGQV 542 (542)
Q Consensus 516 ~GraIfASGspf~pv~~~g~~~~pgQ~ 542 (542)
+|||||||||||+||+|||++|+||||
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~ 185 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQG 185 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccc
Confidence 999999999999999999999999997
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.8e-67 Score=528.38 Aligned_cols=182 Identities=60% Similarity=0.999 Sum_probs=177.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC
Q 009138 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (542)
Q Consensus 359 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l 438 (542)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999987 699999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC
Q 009138 439 QHFKKPWAHEHE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 516 (542)
Q Consensus 439 ~~~k~~fA~~~~--~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~ 516 (542)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcccCCEEEcccCC
Q 009138 517 GRAIFASGSPFDPFEYGDNVFVPGQV 542 (542)
Q Consensus 517 GraIfASGspf~pv~~~g~~~~pgQ~ 542 (542)
|+|||||||||+||+|||++++||||
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~ 184 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQG 184 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCc
Confidence 99999999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1.9e-35 Score=288.99 Aligned_cols=163 Identities=36% Similarity=0.521 Sum_probs=149.7
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC
Q 009138 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (542)
Q Consensus 359 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l 438 (542)
|||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999965 3876 679999999999999997669
Q ss_pred chhchhhcccc--CCC-CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 009138 439 QHFKKPWAHEH--EPV-KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (542)
Q Consensus 439 ~~~k~~fA~~~--~~~-~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt 515 (542)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 223 478899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred CCcEEEEeCCCCCCcccCCEEEccc
Q 009138 516 QGRAIFASGSPFDPFEYGDNVFVPG 540 (542)
Q Consensus 516 ~GraIfASGspf~pv~~~g~~~~pg 540 (542)
|..|||||..+.|.|-||..+|||
T Consensus 143 -ga~i~a~G~~~~~~Q~nn~~~fPg 166 (226)
T cd05311 143 -GADIVATGRSDFPNQVNNVLGFPG 166 (226)
T ss_pred -CCcEEEeCCCCCccccceeeecch
Confidence 555999999999999999999998
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.90 E-value=2e-08 Score=84.38 Aligned_cols=86 Identities=38% Similarity=0.499 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
+||.+++++|..+.+..+.+++..+++|+|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999763 3 257999988
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
|+||++++.++.|.++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 455556899999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.95 E-value=0.00022 Score=77.20 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=106.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHHH---------------------HHHHc-------CCCcee
Q 009138 304 RAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDL---------------------LEKYG-------TTHLVF 355 (542)
Q Consensus 304 R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~l---------------------L~ryr-------~~~~~F 355 (542)
..+-+||++.+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 335678888777765 344566555 4444433332 13453 379999
Q ss_pred e----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEc
Q 009138 356 N----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 425 (542)
Q Consensus 356 N----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvD 425 (542)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+.. .|. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LGA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEc
Confidence 8 6778998777666653 34667899999999999999999988854 353 588888
Q ss_pred ccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 426 SKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 426 skGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
.+ ..|. +...+ ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 243 ~d----p~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VD----PICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CC----chhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 64 1121 11111 11123468888885 99999988877789999999986 344666555544
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.57 E-value=0.00039 Score=74.54 Aligned_cols=126 Identities=24% Similarity=0.376 Sum_probs=86.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 360 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
.+..+|+.+++-.|.+..| ++.+.+++|+|+|..|..++..+.. .|+ .+++++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777788766776655 4889999999999999999988854 254 5788888742 22 11
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCc-EEEEcCCCCCCCCCCHH
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKP-IIFSLSNPTSQSECTAE 509 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erP-IIFaLSNPt~~aEct~e 509 (542)
...+.+....-...++.+++.. .|++|-+++.+ ..+++++++.+.....+| +|+-+++|- ++.|+
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr---did~~ 285 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR---DVDPA 285 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC---CCChh
Confidence 1111111111122467888876 99999987544 478999999875432356 889999996 66654
No 17
>PLN02477 glutamate dehydrogenase
Probab=97.54 E-value=0.0038 Score=67.49 Aligned_cols=185 Identities=22% Similarity=0.230 Sum_probs=127.1
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHH---HHHHHcC----CCcee----------ecCCcchHHHHH
Q 009138 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVF----------NDDIQGTASVVL 367 (542)
Q Consensus 305 ~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~----~~~~F----------NDDiQGTaaVvL 367 (542)
.+..|-..|...|+.++.+.-||..=|-=+|+... ..+ +.+.|+. .-.|+ .+--.-||-=+.
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~-~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~ 190 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTN-AQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVV 190 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC-HHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHH
Confidence 44567788899999999999998554555666543 222 4566653 11111 233345888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEE-EEcccccccCCCccCCchhch-hh
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK-PW 445 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~-lvDskGLi~~~R~~~l~~~k~-~f 445 (542)
.++-.+++..|.+|++.||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|+...+ |+..+. .+
T Consensus 191 ~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~ 256 (410)
T PLN02477 191 FATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKH 256 (410)
T ss_pred HHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHH
Confidence 88899999999999999999999999999999988653 53 566 8999999998753 443221 11
Q ss_pred cccc------C--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 009138 446 AHEH------E--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (542)
Q Consensus 446 A~~~------~--~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 513 (542)
.+.. + ..-+-.+.+. .+.||||=+. .++.+|++.+..+ .-.||.--+| |+ .+| +++.++
T Consensus 257 k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 257 VAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 1110 0 0012233343 4799999665 4679999999987 5889999999 65 344 456654
No 18
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.47 E-value=0.0049 Score=67.33 Aligned_cols=188 Identities=17% Similarity=0.161 Sum_probs=129.7
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHH---HHHHHcCC---C-------cee----ecCCcchHHHHH
Q 009138 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGTT---H-------LVF----NDDIQGTASVVL 367 (542)
Q Consensus 305 ~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~~---~-------~~F----NDDiQGTaaVvL 367 (542)
.+..|-..|...|+.++.+.+||..=|-=+|++. +... +.+.|+.- . |+- .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 4556788899999999999999977777777763 3322 56777631 1 111 133456777788
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEE-cccccccCCCccCCchh-----
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHF----- 441 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lv-DskGLi~~~R~~~l~~~----- 441 (542)
.++..+++..|.+|++.||+|.|-|..|...|++|.. .|. +++.+ |++|-|+...+ |+..
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~ 282 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEI 282 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHH
Confidence 8888999999999999999999999999999999954 353 56655 99999998753 4332
Q ss_pred ch-------hhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 009138 442 KK-------PWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 512 (542)
Q Consensus 442 k~-------~fA~~-~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~ 512 (542)
|. .|... ....-+- +.+..++.||||=+.. .+..|++-...+-. +.-.||.=-+| |+ -+| +++.+
T Consensus 283 k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L 356 (445)
T PRK09414 283 KEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVF 356 (445)
T ss_pred HHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHH
Confidence 21 12110 0001122 2234567999997665 67999999999843 35679999998 76 244 45555
Q ss_pred c
Q 009138 513 T 513 (542)
Q Consensus 513 ~ 513 (542)
.
T Consensus 357 ~ 357 (445)
T PRK09414 357 L 357 (445)
T ss_pred H
Confidence 4
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.39 E-value=0.0021 Score=63.71 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+-+.|++|-|+.. + ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677888889999999999999999999999999999763 53 578899999988887 4 3332
Q ss_pred -chhhccccCCCCC-------HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 009138 442 -KKPWAHEHEPVKE-------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 512 (542)
Q Consensus 442 -k~~fA~~~~~~~~-------L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~ 512 (542)
...++++...... =.+.+-.++.||||=++. .+..|++..+.+. -++|..-+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l~----a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKLK----AKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhcC----ccEEEeCCCCCCC-H--HHHHHH
Confidence 2222221100000 013344568899997776 5699999999984 789998888 874 2 466666
Q ss_pred cccCCc
Q 009138 513 TWSQGR 518 (542)
Q Consensus 513 ~wt~Gr 518 (542)
+ ..|-
T Consensus 140 ~-~~Gi 144 (217)
T cd05211 140 H-ERGI 144 (217)
T ss_pred H-HCCc
Confidence 5 3563
No 20
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.36 E-value=0.0031 Score=68.13 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=89.1
Q ss_pred CCceee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCe
Q 009138 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (542)
Q Consensus 351 ~~~~FN----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~ 420 (542)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 789987 777899977666554 556778999999999999999999998753 253 5
Q ss_pred EEEEcccccccCCCccCCchhchhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 421 IWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 421 i~lvDskGLi~~~R~~~l~~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
++++|.+- .| ...|+ ..-...++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887641 11 11111 11122367888875 89999888877788888888886 5567776776
Q ss_pred CCCCCCCCHHHH
Q 009138 500 PTSQSECTAEEA 511 (542)
Q Consensus 500 Pt~~aEct~edA 511 (542)
.. .|+..++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 64 45555443
No 21
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.30 E-value=0.0014 Score=67.49 Aligned_cols=136 Identities=23% Similarity=0.363 Sum_probs=87.6
Q ss_pred ccHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhcc
Q 009138 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (542)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr 418 (542)
.+||++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..+++.+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 46777777777654444 34456666666666666555 899999999999999999988864 242
Q ss_pred CeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEE
Q 009138 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFS 496 (542)
Q Consensus 419 ~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFa 496 (542)
++|+++|+. .+| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 579999873 222 111222221111112357788876 8999999887654 67666654322 2347789
Q ss_pred cCCCC
Q 009138 497 LSNPT 501 (542)
Q Consensus 497 LSNPt 501 (542)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.28 E-value=0.0012 Score=70.88 Aligned_cols=125 Identities=26% Similarity=0.417 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
+..+|+.+|+--|.+..| ++.+.+++|+|||..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355677676655544444 6888999999999999999988853 353 578988874 222 111
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcC--CCCcEEEEcCCCCCCCCCCHH
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASL--NEKPIIFSLSNPTSQSECTAE 509 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~--~erPIIFaLSNPt~~aEct~e 509 (542)
..+.|........++.+++.. +|++|-+++.+ ..+++++++.+.+. ....+|+=|++|- ++.|+
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr---did~~ 288 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR---DIEPE 288 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC---CCccc
Confidence 122221111112456777775 89999988655 47899999987532 2346888999996 55553
No 23
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.26 E-value=0.004 Score=67.40 Aligned_cols=129 Identities=18% Similarity=0.237 Sum_probs=93.9
Q ss_pred CCceee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCe
Q 009138 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (542)
Q Consensus 351 ~~~~FN----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~ 420 (542)
.+|+|+ |...||+--++-+++. .++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 6778999988777664 66778999999999999999999988754 363 5
Q ss_pred EEEEcccccccCCCccCCchhchhhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 421 IWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 421 i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
++++|.+ . .+..+|+. .-...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~--------~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----P--------ICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----h--------hhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777753 2 22233332 1112346788875 89999999888889999898886 5567766776
Q ss_pred CCCCCCCCHHHHhc
Q 009138 500 PTSQSECTAEEAYT 513 (542)
Q Consensus 500 Pt~~aEct~edA~~ 513 (542)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 6888877653
No 24
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.18 E-value=0.0033 Score=64.50 Aligned_cols=138 Identities=19% Similarity=0.302 Sum_probs=93.9
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC
Q 009138 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (542)
Q Consensus 359 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l 438 (542)
+..+.+++=.++.-+++..+..|.+.+++|+|+|.+|.++|+.+.. .|. +++++|++. . .+
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~-----~G~-------~V~v~~R~~----~---~~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSA-----LGA-------RVFVGARSS----A---DL 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHH-----CCC-------EEEEEeCCH----H---HH
Confidence 3455566666777888888899999999999999999999999964 253 588888741 1 11
Q ss_pred chhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhcccCC
Q 009138 439 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYTWSQG 517 (542)
Q Consensus 439 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~wt~G 517 (542)
...+ .+....-...+|.+.++. .|++|=+. ..+.++++.++.|. +..+|+=++. | -++.++.|.+ -+-
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P---g~tdf~~Ak~-~G~ 256 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP---GGTDFEYAKK-RGI 256 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC---CCCCHHHHHH-CCC
Confidence 1111 000011123467888875 89999754 34578999998885 4678886664 5 4777766654 345
Q ss_pred cEEEEeCCC
Q 009138 518 RAIFASGSP 526 (542)
Q Consensus 518 raIfASGsp 526 (542)
+++.|-|-|
T Consensus 257 ~a~~~~glP 265 (287)
T TIGR02853 257 KALLAPGLP 265 (287)
T ss_pred EEEEeCCCC
Confidence 788888876
No 25
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.18 E-value=0.022 Score=62.33 Aligned_cols=189 Identities=14% Similarity=0.114 Sum_probs=129.2
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHH---HHHHHcC----CCceeec---CC-------cchHHHHH
Q 009138 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVFND---DI-------QGTASVVL 367 (542)
Q Consensus 305 ~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~----~~~~FND---Di-------QGTaaVvL 367 (542)
.+..|-..|.-.||..+.+..||+.=|-=.|+.. ++.+ +++.|+. ...++.- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4455788899999999998889977777777763 3332 5566653 2223211 22 23888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchh---
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP--- 444 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~--- 444 (542)
.++..+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88899999999999999999999999999999999653 64 4567789999998865 35443311
Q ss_pred ------------hccccCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 009138 445 ------------WAHEHEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAE 509 (542)
Q Consensus 445 ------------fA~~~~~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~e 509 (542)
++...+.. -+-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 11110000 01122 22467899997665 57999999999953 34678998998 543 33 45
Q ss_pred HHhc
Q 009138 510 EAYT 513 (542)
Q Consensus 510 dA~~ 513 (542)
+.+.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 6654
No 26
>PLN02494 adenosylhomocysteinase
Probab=97.08 E-value=0.0069 Score=66.70 Aligned_cols=131 Identities=18% Similarity=0.292 Sum_probs=94.2
Q ss_pred CCceee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCe
Q 009138 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (542)
Q Consensus 351 ~~~~FN----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~ 420 (542)
.+|+|| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 556899888887777 567778999999999999999999999843 363 5
Q ss_pred EEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009138 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 421 i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (542)
++++|.+.. |. +.....-| ...++.|+++. .|++|=+++..++++++.++.|. +..++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 887776411 10 11111111 12368898886 89999877777788999999997 67788888887
Q ss_pred CCCCCCCHHHHhcc
Q 009138 501 TSQSECTAEEAYTW 514 (542)
Q Consensus 501 t~~aEct~edA~~w 514 (542)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 5 67777655543
No 27
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.07 E-value=0.021 Score=62.47 Aligned_cols=181 Identities=16% Similarity=0.107 Sum_probs=123.2
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccH--HHHHHHHcC---C-Ccee----------ecCCcchHHHHHH
Q 009138 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA--FDLLEKYGT---T-HLVF----------NDDIQGTASVVLA 368 (542)
Q Consensus 305 ~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nA--f~lL~ryr~---~-~~~F----------NDDiQGTaaVvLA 368 (542)
.+-.|...|.-.||..+.+.+||+.=|--+|++..-. --+.+.|+. . .-+| .+--..||-=++.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 4556778889999999999999988888888865222 225666653 1 1233 3344568888888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc
Q 009138 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (542)
Q Consensus 369 gll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~ 448 (542)
++..+++..|.+|+++||+|.|.|..|...|+.|.+. |. +=+-+.|++|-|+... .++..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8899999999999999999999999999999999763 63 3344699999998764 355544332111
Q ss_pred c-----C-----------CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 009138 449 H-----E-----------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 501 (542)
Q Consensus 449 ~-----~-----------~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 501 (542)
. . ..-+-.+. -.++.||||=+.. .+.+|++.++.+.... .-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~-~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARP-WGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCccc-ccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCCCCC
Confidence 0 0 00011121 1246889986655 5799999999985210 137777777 54
No 28
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.03 E-value=0.0052 Score=64.98 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
|+++..+++--|.+..|..|++.+++|.|| |+.|.-+|++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888889899999999999999999999 89999999999642 232 578888764 222 333
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCC--CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT--FTKEVVEAMASLNEKPIIFSLSNPTS 502 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~--Fteevv~~Ma~~~erPIIFaLSNPt~ 502 (542)
.+.++.. ....+|.+++.. +|++|=+++.+.. ++++.++ +.-+|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCCC
Confidence 3333321 223468888886 9999988776433 6777662 3345566899963
No 29
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.02 E-value=0.005 Score=58.87 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA 446 (542)
.+.+-.++....+|++.+++++|+|. +|..+|+.|.. .|. ++++++++
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------- 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-------------------
Confidence 33344555556789999999999998 59989988865 242 58888864
Q ss_pred cccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 447 HEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 447 ~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
..+|.+.++. .|++|..++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 -----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 1357888887 99999999988899999764 357899999986
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.92 E-value=0.00078 Score=61.28 Aligned_cols=102 Identities=24% Similarity=0.425 Sum_probs=68.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc---cCCCCCH
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 455 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~---~~~~~~L 455 (542)
.++++.+++|+|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 389999999999999999998888663 64 689999873 333 22333333110 1123567
Q ss_pred HHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009138 456 VDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPIIFSLSNPTS 502 (542)
Q Consensus 456 ~eaV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaLSNPt~ 502 (542)
.+.++. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 777776 999999987663 7888888654311 249999999963
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.85 E-value=0.0095 Score=61.31 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchh
Q 009138 365 VVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 444 (542)
Q Consensus 365 VvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~ 444 (542)
++-+++..|++..+.++...|++|+|+|.+|..++..+.. .|. +++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~Ga-------~V~v~~r~~----~--------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LGA-------NVTVGARKS----A--------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECCH----H--------HHH
Confidence 3334566778888889999999999999999999988854 352 688888861 1 111
Q ss_pred hccc----cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-cE
Q 009138 445 WAHE----HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG-RA 519 (542)
Q Consensus 445 fA~~----~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G-ra 519 (542)
+++. .-...+|.+.++. .|++|-++. ...+++++++.|. +..+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 1111 0112467788885 999998754 4578999999997 566777555432 3465655533 34 55
Q ss_pred EEEeCCCC
Q 009138 520 IFASGSPF 527 (542)
Q Consensus 520 IfASGspf 527 (542)
+.++|-|-
T Consensus 260 ~~~~~lpg 267 (296)
T PRK08306 260 LLAPGLPG 267 (296)
T ss_pred EEECCCCc
Confidence 66788763
No 32
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.71 E-value=0.016 Score=56.31 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHHHh--CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC
Q 009138 361 GTASVVLAGLISAMKFL--GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~--g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l 438 (542)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.|.+. |. +++++|.+. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH-------HHH
Confidence 35666667777788875 8899999999999999999999988653 53 688888651 123
Q ss_pred chhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhcccCC
Q 009138 439 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYTWSQG 517 (542)
Q Consensus 439 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~wt~G 517 (542)
..++..|.- . .-+..+... .+.|+++=++. ++.+|++.++.|. -++|..-+| |++. ..+++.++ ..|
T Consensus 65 ~~~~~~~g~--~-~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~~--~~~~~~L~-~~G 132 (200)
T cd01075 65 ARAAELFGA--T-VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLAD--PRHGQMLH-ERG 132 (200)
T ss_pred HHHHHHcCC--E-EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccCC--HhHHHHHH-HCC
Confidence 333333311 1 112233333 36999995555 6799999999994 679999888 6632 34556555 345
Q ss_pred cE
Q 009138 518 RA 519 (542)
Q Consensus 518 ra 519 (542)
-.
T Consensus 133 i~ 134 (200)
T cd01075 133 IL 134 (200)
T ss_pred CE
Confidence 43
No 33
>PLN00203 glutamyl-tRNA reductase
Probab=96.66 E-value=0.0068 Score=67.35 Aligned_cols=121 Identities=22% Similarity=0.356 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHHHHhCC-CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGG-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~-~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
|--+|+-+|+--|.+..|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. .+| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 4445666666666777664 6999999999999999999887753 353 579998874 222 22
Q ss_pred hhchhhcc---ccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCC---CCc-EEEEcCCCC
Q 009138 440 HFKKPWAH---EHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN---EKP-IIFSLSNPT 501 (542)
Q Consensus 440 ~~k~~fA~---~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~---erP-IIFaLSNPt 501 (542)
.....|-. ...+..++.++++. +|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 22222210 11223567888876 99999886544 489999999984321 244 667799996
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.66 E-value=0.0072 Score=65.54 Aligned_cols=135 Identities=23% Similarity=0.385 Sum_probs=90.3
Q ss_pred ccHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhcc
Q 009138 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (542)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr 418 (542)
..||..=+|+|..-- + -.|-.+|.-|++--|-++.|. |++.+++|+|||..|..+|+.|... |+
T Consensus 139 qkAi~~gKrvRseT~-I---~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETG-I---GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccC-C---CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 466667777775310 0 123445555666666666655 9999999999999999999888763 64
Q ss_pred CeEEEEcccccccCCCccCCchhchhhccc----cCCCCCHHHHHhccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCcE
Q 009138 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVDAVNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPI 493 (542)
Q Consensus 419 ~~i~lvDskGLi~~~R~~~l~~~k~~fA~~----~~~~~~L~eaV~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPI 493 (542)
++|+++++ |..|. +.+|+. .-....|.+.+.. .||+|=.+ ++.-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNR----T~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANR----TLERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcC----CHHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 68888877 33332 223332 1223567778877 89988654 4446889999887654333349
Q ss_pred EEEcCCCCC
Q 009138 494 IFSLSNPTS 502 (542)
Q Consensus 494 IFaLSNPt~ 502 (542)
||=++||-.
T Consensus 270 ivDiavPRd 278 (414)
T COG0373 270 IVDIAVPRD 278 (414)
T ss_pred EEEecCCCC
Confidence 999999974
No 35
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.64 E-value=0.038 Score=56.51 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEE-EEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~-lvDskGLi~~~R~~~l~ 439 (542)
-||-=+..++-.+++..+.+|++.||+|.|-|..|.+.|++|.+ .|. +++ +.|++|-|+.... |+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~G--ld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPDG--FT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCCC--CC
Confidence 46666777888888889999999999999999999999999965 363 566 9999999998753 44
Q ss_pred hhch---------------hhccccC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 009138 440 HFKK---------------PWAHEHE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 501 (542)
Q Consensus 440 ~~k~---------------~fA~~~~--~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 501 (542)
..+. .|....+ ..-+-.|.. .++.||||=+.. ++.+|++.+..+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 2221 1110000 001222322 457899997655 67999999999843 35789999999 77
Q ss_pred CCCCCCHHHHhc
Q 009138 502 SQSECTAEEAYT 513 (542)
Q Consensus 502 ~~aEct~edA~~ 513 (542)
+ + .+++.+.
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 3455554
No 36
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.58 E-value=0.018 Score=57.38 Aligned_cols=132 Identities=25% Similarity=0.284 Sum_probs=93.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 360 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577778888888999999999999999999999999999998653 53 33559999999998753 43
Q ss_pred hhch-hhccccC------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 009138 440 HFKK-PWAHEHE------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAE 509 (542)
Q Consensus 440 ~~k~-~fA~~~~------~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~e 509 (542)
.... .+.+... .. -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |.+ +| ++
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~t-~~--a~ 145 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPTT-PE--AD 145 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCCC-HH--HH
Confidence 2221 1111100 00 12233 3345889999877 4679999999998 4889999999 553 33 44
Q ss_pred HHhc
Q 009138 510 EAYT 513 (542)
Q Consensus 510 dA~~ 513 (542)
+.++
T Consensus 146 ~~L~ 149 (227)
T cd01076 146 EILH 149 (227)
T ss_pred HHHH
Confidence 5544
No 37
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.55 E-value=0.052 Score=60.02 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCceeecCCcchHHHH-------HHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEE
Q 009138 351 THLVFNDDIQGTASVV-------LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (542)
Q Consensus 351 ~~~~FNDDiQGTaaVv-------LAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~l 423 (542)
.+||+|-+---|-+++ ++.+-+.+|.++..|.+.+++|+|.|..|.++|+.+.. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899986655444433 44445557778899999999999999999999999854 253 5777
Q ss_pred EcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 424 VDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 424 vDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
+|++-. +. +.... ..-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 766411 11 11010 11112468898886 99999988878899999999997 556766666553
No 38
>PLN00106 malate dehydrogenase
Probab=96.53 E-value=0.022 Score=59.84 Aligned_cols=142 Identities=21% Similarity=0.273 Sum_probs=92.8
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA 446 (542)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 344678888887665 59999999 9999999998854 244 25799999865 1211112332221 11
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHH
Q 009138 447 HEH--EPVKELVDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAE 509 (542)
Q Consensus 447 ~~~--~~~~~L~eaV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~-~aEct~e 509 (542)
+-. ....++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 123467899998 8998877766432 34678888999999999999999982 2225555
Q ss_pred HHhcccCC--cEEEEeCC
Q 009138 510 EAYTWSQG--RAIFASGS 525 (542)
Q Consensus 510 dA~~wt~G--raIfASGs 525 (542)
.+.+++.= .-+|.+|.
T Consensus 148 ~~~~~s~~p~~~viG~~~ 165 (323)
T PLN00106 148 VLKKAGVYDPKKLFGVTT 165 (323)
T ss_pred HHHHcCCCCcceEEEEec
Confidence 55555421 44666653
No 39
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.51 E-value=0.22 Score=54.90 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=132.9
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHH---HHHHHcC---CC-ceee----------cCCcchHHHHH
Q 009138 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT---TH-LVFN----------DDIQGTASVVL 367 (542)
Q Consensus 305 ~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~---~~-~~FN----------DDiQGTaaVvL 367 (542)
.+..|-..|...||..+.+..||..=|-=.|++. ++.+ +.+.|+. .. .|+- +--..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556677899999999999999998888899884 3333 4455542 21 2221 11234888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEE-EEcccccccCCCccCCchhch---
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK--- 443 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~-lvDskGLi~~~R~~~l~~~k~--- 443 (542)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+ .|. +++ +.|++|-|+... .++..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e-----~Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQ-----LGA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 8889999999999999999999999999999999965 363 566 999999999875 3544332
Q ss_pred ------------hhccccCCCC--CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCH
Q 009138 444 ------------PWAHEHEPVK--ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTA 508 (542)
Q Consensus 444 ------------~fA~~~~~~~--~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~ 508 (542)
.|+......+ +-.+ +-.++.||||=+.. .+.+|++-++.+-+ +.-.+|.=-+| |++ +| +
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t-~e--A 361 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT-IE--A 361 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC-HH--H
Confidence 2211000000 1111 22367999997776 56999999998843 34568888888 764 23 5
Q ss_pred HHHhcccCCcEEEE
Q 009138 509 EEAYTWSQGRAIFA 522 (542)
Q Consensus 509 edA~~wt~GraIfA 522 (542)
++.++- +| ++|+
T Consensus 362 ~~~L~~-~G-I~~~ 373 (454)
T PTZ00079 362 THLFKK-NG-VIFC 373 (454)
T ss_pred HHHHHH-CC-cEEE
Confidence 555542 33 4444
No 40
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.23 E-value=0.016 Score=62.58 Aligned_cols=131 Identities=18% Similarity=0.296 Sum_probs=80.1
Q ss_pred cHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccC
Q 009138 340 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (542)
Q Consensus 340 nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~ 419 (542)
.||..=.|-|.+.-+ + .|--+|+-+|+--|-+.. .++++.+++|+|||.+|-.+|..|.. .|. +
T Consensus 143 ~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~ 206 (414)
T PRK13940 143 KVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------K 206 (414)
T ss_pred HHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------C
Confidence 455555555643211 0 222344445554444444 35889999999999999988888754 364 5
Q ss_pred eEEEEcccccccCCCccCCchhchhhc-cccCCCCCHHHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcE-EEE
Q 009138 420 KIWLVDSKGLIVSSRLESLQHFKKPWA-HEHEPVKELVDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPI-IFS 496 (542)
Q Consensus 420 ~i~lvDskGLi~~~R~~~l~~~k~~fA-~~~~~~~~L~eaV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPI-IFa 496 (542)
+|+++++. .+|...| ...|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+=
T Consensus 207 ~I~V~nRt----~~ra~~L---a~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT----IEKAQKI---TSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFID 271 (414)
T ss_pred EEEEECCC----HHHHHHH---HHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEE
Confidence 79988884 2332212 22221 111223567788876 999999887664 67877652 4565 577
Q ss_pred cCCCC
Q 009138 497 LSNPT 501 (542)
Q Consensus 497 LSNPt 501 (542)
|++|-
T Consensus 272 LavPR 276 (414)
T PRK13940 272 ISIPQ 276 (414)
T ss_pred eCCCC
Confidence 99995
No 41
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.15 E-value=0.09 Score=50.63 Aligned_cols=120 Identities=19% Similarity=0.284 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 360 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... |. ++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----Ga-------~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----GA-------RVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----CC-------EEEEEECC------------
Confidence 477777777766 5688999999999999999999999998553 53 67766653
Q ss_pred hhchhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 009138 440 HFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 513 (542)
Q Consensus 440 ~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~ 513 (542)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..-= .-|+.-+..-+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~--d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHF--DVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSS--TTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcC--ceeEeeccccc
Confidence 22211121 22234579999987 99999999988899999999997 56666644432 25777766433
No 42
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.13 E-value=0.02 Score=59.45 Aligned_cols=96 Identities=18% Similarity=0.369 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-+|++..++..+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445778899999999999999999999999988 99999999964 24 3577887641
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (542)
.+|.+.++. +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 258888887 99999999999999999874 55788877765
No 43
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.13 E-value=0.032 Score=57.62 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
..+-+|-.|++..++..+.+++.+++|++|+|- +|.+||.+|.. .| | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 446677799999999999999999999999997 99999999864 24 2 68888762
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc-CCCC---CCCCCCHHHHhc
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL-SNPT---SQSECTAEEAYT 513 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL-SNPt---~~aEct~edA~~ 513 (542)
..+|.+.++. +|++|-..+.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246777775 99999999999999998864 45677655 3773 112667777754
No 44
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.05 E-value=0.039 Score=52.48 Aligned_cols=114 Identities=20% Similarity=0.266 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
||+.+++.+..+++..|..+++.+++++|+ |..|..+++.++.. | .++++++++ .++ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~----~~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD----LER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC----HHH---HHH
Confidence 677778888888888899999999999997 99998888888642 3 368888765 111 212
Q ss_pred hchhhcc---------ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCC--cEEEEcCCCC
Q 009138 441 FKKPWAH---------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEK--PIIFSLSNPT 501 (542)
Q Consensus 441 ~k~~fA~---------~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~er--PIIFaLSNPt 501 (542)
....+.. +.....++.+++++ .|++|-.+..+ ..+....+ ...+ .+++=+..|-
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g-~~~~~~~~----~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG-VELLEKLA----WAPKPLAVAADVNAVP 132 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC-ceechhhh----cccCceeEEEEccCCC
Confidence 1111110 11122356677875 89999877654 44322221 1233 3677666654
No 45
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.97 E-value=0.024 Score=51.17 Aligned_cols=134 Identities=21% Similarity=0.282 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 447 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~ 447 (542)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... | -.+++++|++ ..+ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999999888888888542 3 1578888874 111 2222222221
Q ss_pred c--cCCCCCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHHHhcccCCcEEEEe
Q 009138 448 E--HEPVKELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS-NPTSQSECTAEEAYTWSQGRAIFAS 523 (542)
Q Consensus 448 ~--~~~~~~L~eaV~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS-NPt~~aEct~edA~~wt~GraIfAS 523 (542)
. .....++.++++. +|++|-+...+ .. .+++........+..+|+=+| +|.. +.-.++|.+. | +.|.+
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~-~~~~~~~~~~~~~~~~~~~v~D~~~~~~~--~~l~~~~~~~--g-~~~v~ 137 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVG-MKPGDELPLPPSLLKPGGVVYDVVYNPLE--TPLLKEARAL--G-AKTID 137 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCC-CCCCCCCCCCHHHcCCCCEEEEcCcCCCC--CHHHHHHHHC--C-CceeC
Confidence 1 0123466777765 99999877544 32 111110001123667888775 4542 2222333332 3 45666
Q ss_pred CCCC
Q 009138 524 GSPF 527 (542)
Q Consensus 524 Gspf 527 (542)
|-|.
T Consensus 138 g~~~ 141 (155)
T cd01065 138 GLEM 141 (155)
T ss_pred CHHH
Confidence 6553
No 46
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.79 E-value=0.018 Score=57.62 Aligned_cols=130 Identities=21% Similarity=0.311 Sum_probs=86.3
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc--cCCCCCHHHHHhcc
Q 009138 386 FLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 462 (542)
Q Consensus 386 iv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~--~~~~~~L~eaV~~v 462 (542)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.-...+.+...++ .. -....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 578999 99999999988653 41 113689999986411111111233333222 11 1113578899987
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEeCCC
Q 009138 463 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (542)
Q Consensus 463 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraIfASGsp 526 (542)
+|++|=+.+.++. .-+++.+.|.++++..+++-.|||. .....-+++++ ...-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~- 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT- 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec-
Confidence 9998866555432 3578899999999999999999996 77777787774 3455889886
Q ss_pred CCCc
Q 009138 527 FDPF 530 (542)
Q Consensus 527 f~pv 530 (542)
.++.
T Consensus 146 ld~~ 149 (263)
T cd00650 146 LDPI 149 (263)
T ss_pred chHH
Confidence 5543
No 47
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.78 E-value=0.032 Score=57.16 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch-hchhhc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWA 446 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~-~k~~fA 446 (542)
.|++.+++..+..++.++++++|||.||.+|+..|.. .|+ ++|+++|+. ..|.+.+.. .+..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4667777766667888999999999999999988865 365 579999985 333222221 111111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 009138 447 H-EHEPVKELVDAVNAIKPTILIGTSGQG 474 (542)
Q Consensus 447 ~-~~~~~~~L~eaV~~vkPtvLIG~S~~~ 474 (542)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 1 01112455666665 89999987654
No 48
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.74 E-value=0.035 Score=58.97 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=64.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc----ccCCCCCHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----EHEPVKELV 456 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~----~~~~~~~L~ 456 (542)
+...+++|+|+|.+|.++|+.+.. .|. ++.++|++ ..| +......|.. ...+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999998854 363 58888874 111 2122222221 111124588
Q ss_pred HHHhccCCcEEEEccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 457 DAVNAIKPTILIGTSGQ-----GRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 457 eaV~~vkPtvLIG~S~~-----~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
++++. .|++|.+... +.++|+++++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 9999987532 4468999999996 5688888874
No 49
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.55 E-value=0.035 Score=57.03 Aligned_cols=127 Identities=15% Similarity=0.212 Sum_probs=80.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc-CCCCCHHHHHhccC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 463 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~-~~~~~L~eaV~~vk 463 (542)
||.|+|||.+|..+|..++. .|+ ..+|.++|.+-=..++-..+|.+......... -...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~-- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKD-- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCC--
Confidence 89999999999999998854 254 25799999852221111111221110000000 011233 44665
Q ss_pred CcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEeCCCC
Q 009138 464 PTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSPF 527 (542)
Q Consensus 464 PtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G--raIfASGspf 527 (542)
.|++|=+.+.+.. +=+++.+.|.+++..-+|+-.|||. .+...-++++++= +-||++|.-.
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt~L 145 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGTSL 145 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccchH
Confidence 9999988876521 1257788888999999999999997 6777777776421 4588888763
No 50
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.34 E-value=0.039 Score=56.32 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=65.1
Q ss_pred CceeecCCcchHHHHHHHHHHHHHHhCC--CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 352 HLVFNDDIQGTASVVLAGLISAMKFLGG--SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 352 ~~~FNDDiQGTaaVvLAgll~Alr~~g~--~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
..=+|-|.. |++.+++..+. ++++.+++++|||.||-+|+..|.. .|+ ++|+++++.
T Consensus 100 l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC--
Confidence 445676743 56677776663 6889999999999999888887754 365 689999873
Q ss_pred ccCCCccCCchhchhhcccc--CCC---CCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 009138 430 IVSSRLESLQHFKKPWAHEH--EPV---KELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (542)
Q Consensus 430 i~~~R~~~l~~~k~~fA~~~--~~~---~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 483 (542)
.+|.+.|.+ .|.... ... ..+.+++. ++|++|.++..+-.++.+.+.
T Consensus 159 --~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 159 --PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred --HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHhh
Confidence 333222321 121100 011 12334444 489999999887666665543
No 51
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.22 E-value=0.032 Score=46.76 Aligned_cols=94 Identities=15% Similarity=0.278 Sum_probs=63.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEE-cccccccCCCccCCchhchhhccccCCCC-CHHHHHhcc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEHEPVK-ELVDAVNAI 462 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lv-DskGLi~~~R~~~l~~~k~~fA~~~~~~~-~L~eaV~~v 462 (542)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+.+.+.++.|... -.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 689999999999999988763 54 24677755 552 12233333333211 112 78999996
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (542)
+|++| ++..+ ..-+++++.+....+..+|..++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99988 66655 4566788888666788999988886
No 52
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.09 E-value=0.054 Score=54.69 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=89.9
Q ss_pred cCCcchHHHHHHHHHHHHHHhCCC-CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCc
Q 009138 357 DDIQGTASVVLAGLISAMKFLGGS-LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL 435 (542)
Q Consensus 357 DDiQGTaaVvLAgll~Alr~~g~~-L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~ 435 (542)
|--+-||-=+..++-.+++..+.. |++.|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|+...+
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~G 73 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDG 73 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCC
Confidence 334568888888889999997766 9999999999999999999999774 52 34566799999987543
Q ss_pred cCCchhchhhccccCCCCC-----------HHH--HHhccCCcEEEEccCCCCCCCHHHHH-HHHcCCCCcEEEEcCC-C
Q 009138 436 ESLQHFKKPWAHEHEPVKE-----------LVD--AVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIFSLSN-P 500 (542)
Q Consensus 436 ~~l~~~k~~fA~~~~~~~~-----------L~e--aV~~vkPtvLIG~S~~~g~Fteevv~-~Ma~~~erPIIFaLSN-P 500 (542)
-+.+...+...+....+.. +.+ .+=.++.||||=+ +.++.+|++.+. .+.+ .-+||.--+| |
T Consensus 74 ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN~p 150 (244)
T PF00208_consen 74 LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGANGP 150 (244)
T ss_dssp EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSSSS
T ss_pred chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcchh
Confidence 1111111111111110111 111 4555799999988 567899999998 7742 4789999999 5
Q ss_pred C
Q 009138 501 T 501 (542)
Q Consensus 501 t 501 (542)
+
T Consensus 151 ~ 151 (244)
T PF00208_consen 151 L 151 (244)
T ss_dssp B
T ss_pred c
Confidence 5
No 53
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.08 E-value=0.094 Score=55.72 Aligned_cols=124 Identities=12% Similarity=0.139 Sum_probs=73.2
Q ss_pred ccHHHHHHHHcCCCceeecCCcchHHHHHH--HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh
Q 009138 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLA--GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE 416 (542)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLA--gll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee 416 (542)
..||..=+|-|.+.- | |.++|.++ ++..+ +.. .+|++.+++++|||+.|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 345555556664321 1 33444443 33333 333 56999999999999998877777755 364
Q ss_pred ccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHh-ccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCC
Q 009138 417 TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN-AIKPTILIGT----SGQGRTFTKEVVEAMASLNEK 491 (542)
Q Consensus 417 Ar~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~-~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~er 491 (542)
++|+++.+.-. + .+|..-. .+++. ..+.||+|=. +++.-.++.+.++..- +|
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~~~------~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~---~r 255 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRTVV------REELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP---DR 255 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhhhh------hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc---Cc
Confidence 67998888641 1 2222100 01111 1358999964 3344467777766421 23
Q ss_pred cEEEEcCCCCCC
Q 009138 492 PIIFSLSNPTSQ 503 (542)
Q Consensus 492 PIIFaLSNPt~~ 503 (542)
++|=||+|-.-
T Consensus 256 -~~iDLAvPRdI 266 (338)
T PRK00676 256 -IVFDFNVPRTF 266 (338)
T ss_pred -EEEEecCCCCC
Confidence 99999999854
No 54
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.03 E-value=0.074 Score=53.85 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=72.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhc-------hhhc----------
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-------KPWA---------- 446 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k-------~~fA---------- 446 (542)
.+|.|+|+|..|.+||..++.. |. +++++|.+- + .++..+ ..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 53 688898641 1 111111 1110
Q ss_pred -cc----cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 009138 447 -HE----HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521 (542)
Q Consensus 447 -~~----~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIf 521 (542)
.. .....++.++++. .|++|=+-...-.+.+++++.+.+......|+ .||.+++ .+.++.+..+-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCcccE
Confidence 00 0113578899886 88888543322236677888887766655666 3565544 444444333221224
Q ss_pred EeCCCCCCccc
Q 009138 522 ASGSPFDPFEY 532 (542)
Q Consensus 522 ASGspf~pv~~ 532 (542)
....||.|...
T Consensus 139 vg~Hf~~p~~~ 149 (287)
T PRK08293 139 LALHFANEIWK 149 (287)
T ss_pred EEEcCCCCCCc
Confidence 44688998754
No 55
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.99 E-value=0.054 Score=58.77 Aligned_cols=127 Identities=17% Similarity=0.300 Sum_probs=79.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCC-----CCCHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISK-QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~-~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 456 (542)
.||+|+||||+ -..+++ ..+.+ ...++ ...|||+|-+- ..|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333444 43333 23332 36899999862 22211111111222221 111 25899
Q ss_pred HHHhccCCcEEEEccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009138 457 DAVNAIKPTILIGTSGQGRT----------------------------------FTKEVVEAMASLNEKPIIFSLSNPTS 502 (542)
Q Consensus 457 eaV~~vkPtvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~erPIIFaLSNPt~ 502 (542)
||+++ +|.+|=.-.+||. .=.|+++.|.++|+..+|+=.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~- 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPA- 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHH-
Confidence 99998 8888766555542 1238888899999999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEEeCCC
Q 009138 503 QSECTAEEAYTWSQGRAIFASGSP 526 (542)
Q Consensus 503 ~aEct~edA~~wt~GraIfASGsp 526 (542)
-+..+-+++++ ..-+|.+|-.
T Consensus 148 --~ivt~a~~k~~-~~rviGlc~~ 168 (419)
T cd05296 148 --GIVTEAVLRHT-GDRVIGLCNV 168 (419)
T ss_pred --HHHHHHHHHhc-cCCEEeeCCc
Confidence 46667777777 4457777643
No 56
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.95 E-value=0.054 Score=56.36 Aligned_cols=127 Identities=15% Similarity=0.271 Sum_probs=81.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc-CCCCCHHHHHhcc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAI 462 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~-~~~~~L~eaV~~v 462 (542)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+--..++-.-+|.+.. +|-+.. -..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998764 365 3679999974221111111233222 221110 011344 55776
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEeCCC
Q 009138 463 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (542)
Q Consensus 463 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraIfASGsp 526 (542)
.|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++....+++++ .-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 9999977665421 1256788888999999999999997 77777887776 33447777654
Q ss_pred C
Q 009138 527 F 527 (542)
Q Consensus 527 f 527 (542)
.
T Consensus 150 L 150 (315)
T PRK00066 150 L 150 (315)
T ss_pred H
Confidence 3
No 57
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.91 E-value=0.096 Score=54.72 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=80.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc---CCCCCHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 458 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~---~~~~~L~ea 458 (542)
+-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....++ ++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HH
Confidence 34699999999999999998754 365 23999997532222211112211 1121111 112466 57
Q ss_pred HhccCCcEEEEccCCCCCC-------------------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--C
Q 009138 459 VNAIKPTILIGTSGQGRTF-------------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--G 517 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g~F-------------------teevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--G 517 (542)
+++ +|++|=+.+.++.- -+++++.|.+++..-+++--|||. ......+.++++ -
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~ 146 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPK 146 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCCh
Confidence 776 89999666554321 247888888999888999999996 555666666653 2
Q ss_pred cEEEEeCCCC
Q 009138 518 RAIFASGSPF 527 (542)
Q Consensus 518 raIfASGspf 527 (542)
.-+|++|.-.
T Consensus 147 ~rviGlgt~l 156 (321)
T PTZ00082 147 NKVCGMAGVL 156 (321)
T ss_pred hhEEEecCcc
Confidence 4688888433
No 58
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.24 Score=51.57 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++..++-.+.+|+..+++++|-|. .|..+|.||.. .|. .+.+|+++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~a-------tVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AGC-------TVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------eEEEEECC--------------
Confidence 4678899999999999999999999999998 99999998854 242 57777664
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCC----CCCCCCHHHHhcccC
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS-NPT----SQSECTAEEAYTWSQ 516 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS-NPt----~~aEct~edA~~wt~ 516 (542)
.++|.+.++. +|++|-..+.++.|+.++|+ +.-+|+-.. |+. -.--+.+|.+.+.
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvGin~~~~gk~~GDvd~~~~~~~-- 252 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVGINRLEDGKLVGDVEFETAAER-- 252 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcccccccCCCcCCCcCHHHHHhh--
Confidence 1358888987 99999999999999999986 667887666 442 1233666777552
Q ss_pred CcEEEEeCCC
Q 009138 517 GRAIFASGSP 526 (542)
Q Consensus 517 GraIfASGsp 526 (542)
+-+.|..|
T Consensus 253 --a~~itPvP 260 (285)
T PRK10792 253 --ASWITPVP 260 (285)
T ss_pred --ccCcCCCC
Confidence 44555544
No 59
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.70 E-value=0.26 Score=46.10 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhch
Q 009138 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 443 (542)
Q Consensus 364 aVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~ 443 (542)
-++..|++..++..|.+++.++++++|.+.. +++-++..|.+ .|. .+.++|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 4578889999999999999999999998754 44444444433 353 567777641
Q ss_pred hhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 444 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 444 ~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
.+|.|+++. +|++|-..+.++.|+.|+|+ +.-+|..-
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vidv 99 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVINC 99 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEEc
Confidence 268889997 99999999999999999996 45566643
No 60
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.68 E-value=0.15 Score=53.10 Aligned_cols=127 Identities=19% Similarity=0.309 Sum_probs=80.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc---CCCCCHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 458 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~---~~~~~L~ea 458 (542)
+..||.|+|||..|.++|.+++. .|+ ..+.|+|.+--...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 44699999999999999988765 254 24999997521111111012222 1111111 1124665 6
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 009138 459 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraIfA 522 (542)
+++ +|++|=+.+.+.. +-+++.+.|.++++.-+++=.|||. ......+.++++ -.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 776 8999866655432 2348999999999999888889997 555667777663 145888
Q ss_pred eCCC
Q 009138 523 SGSP 526 (542)
Q Consensus 523 SGsp 526 (542)
+|+-
T Consensus 146 ~gt~ 149 (319)
T PTZ00117 146 MAGV 149 (319)
T ss_pred ecch
Confidence 8843
No 61
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.68 E-value=0.19 Score=56.05 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccC---C------------chhchh
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLES---L------------QHFKKP 444 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~---l------------~~~k~~ 444 (542)
.....|++|+|||.+|++.+..... .| | +++.+|.. ..|.+. + ......
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccc
Confidence 3458899999999999988776643 36 2 47777764 111110 0 001122
Q ss_pred hccccCC-C-----CCHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCH
Q 009138 445 WAHEHEP-V-----KELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTA 508 (542)
Q Consensus 445 fA~~~~~-~-----~~L~eaV~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ 508 (542)
||+...+ . ..+.+.++ ++|++|.+++.+| +++++.++.|. +.-.|.=++.+. ..+|++.
T Consensus 226 ya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 3332111 0 01222223 4999999999866 67999999997 455666677653 3346654
No 62
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.54 E-value=0.09 Score=53.58 Aligned_cols=127 Identities=17% Similarity=0.280 Sum_probs=75.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc--cCCCCCHHHHHhc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNA 461 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~--~~~~~~L~eaV~~ 461 (542)
.||.|+|||..|.++|..++. .|+ . .++++|.+-=..++...++.+........ -....+. ++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 489999999999999998764 254 2 79999983111111000011110000000 0112355 55776
Q ss_pred cCCcEEEEccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEeCC
Q 009138 462 IKPTILIGTSGQGR--------------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGS 525 (542)
Q Consensus 462 vkPtvLIG~S~~~g--------------~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G--raIfASGs 525 (542)
+|++|=+.+.+. -.-+++++.|.+.+...+++-.|||. .....-++++++= +-+|++|.
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s~~~~~~viG~gt 145 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKESGFPKNRVIGMAG 145 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCcccEEEeCC
Confidence 899884333332 12357778888899999888889996 5666666666521 56899985
Q ss_pred CC
Q 009138 526 PF 527 (542)
Q Consensus 526 pf 527 (542)
-.
T Consensus 146 ~l 147 (307)
T PRK06223 146 VL 147 (307)
T ss_pred Cc
Confidence 43
No 63
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.52 E-value=0.92 Score=47.58 Aligned_cols=154 Identities=13% Similarity=0.178 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCccHHHHHHHHcCCCceeecC---CcchHHHHHHHHHHHHHH---------------
Q 009138 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD---IQGTASVVLAGLISAMKF--------------- 376 (542)
Q Consensus 315 defv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDD---iQGTaaVvLAgll~Alr~--------------- 376 (542)
.|++++..+. |-+ +|+.-=.+..| .++-.-.+..+.+.|-- -+.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~lk-~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GIK-QIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cce-EEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 4555555431 111 24443333333 33333334578887742 245666678888876652
Q ss_pred ----hCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCC
Q 009138 377 ----LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV 452 (542)
Q Consensus 377 ----~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~ 452 (542)
.|..|.+.+|.|+|+|..|..+|+.+... .|+ ++|..|... . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 23468899999999999999999999533 253 688888642 1 001 1111 123
Q ss_pred CCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009138 453 KELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 453 ~~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (542)
.+|.|+++. .|+++=.- ...++|+++.++.|. +..++.=+|.=
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sRG 238 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCARG 238 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCCC
Confidence 589999987 89888542 123577788888886 67788877764
No 64
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.52 E-value=0.098 Score=56.90 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=79.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhc-CCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCC-----CCCHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQT-NMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~-G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 456 (542)
.||+|+||||+ -...|+..+.+.. .++ ...|||+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999996 4444444444322 342 4789999965 44432222222233322 112 25899
Q ss_pred HHHhccCCcEEEEccCCC--------------------------CCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 009138 457 DAVNAIKPTILIGTSGQG--------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 502 (542)
Q Consensus 457 eaV~~vkPtvLIG~S~~~--------------------------g~Ft--------eevv~~Ma~~~erPIIFaLSNPt~ 502 (542)
||+++ +|.+|-.-.+| |.|. .++++.|.++|+..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 88777443333 3332 38899999999999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEEeCC
Q 009138 503 QSECTAEEAYTWSQGRAIFASGS 525 (542)
Q Consensus 503 ~aEct~edA~~wt~GraIfASGs 525 (542)
-+..+-+++++...-+|++|.
T Consensus 147 --di~t~a~~~~~p~~rviG~c~ 167 (425)
T cd05197 147 --GEVTEAVRRYVPPEKAVGLCN 167 (425)
T ss_pred --HHHHHHHHHhCCCCcEEEECC
Confidence 555556666774445677664
No 65
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.51 E-value=0.026 Score=52.04 Aligned_cols=115 Identities=21% Similarity=0.335 Sum_probs=71.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc-ccccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk-GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (542)
.||.|+|| |..|..+|-+|+.. |+ -++|.|+|.+ .. .++..-+|.+..-+.-++..-..+..++++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~-~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDK-AEGEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHH-HHHHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCccc-ceeeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 55 2569999987 21 1111111322221111111111255677776
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 009138 462 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 514 (542)
Q Consensus 462 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w 514 (542)
.|++|=+.+.+ |- +-+++.+.+++++...+++-.|||. ....+-+++.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv---d~~t~~~~~~ 131 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV---DVMTYVAQKY 131 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH---HHHHHHHHHH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH---HHHHHHHHHh
Confidence 89999665543 21 2347778888899999999999996 4555555543
No 66
>PRK05086 malate dehydrogenase; Provisional
Probab=94.42 E-value=0.23 Score=51.64 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=77.4
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCCCCCHHHHHhc
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNA 461 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~~~~L~eaV~~ 461 (542)
.||+|+|| |..|..+|.++... .+. -..+.++|++-. ..+..-++.+. .....- .....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887442 122 246889997522 11110012211 000000 0012477888887
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHH----Hhccc--CCcEEE
Q 009138 462 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE----AYTWS--QGRAIF 521 (542)
Q Consensus 462 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~ed----A~~wt--~GraIf 521 (542)
.|++|=+.+.+.- ..++++++|.+++.+.+|+-.|||. .+..-- +++++ ...-+|
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~---D~~t~~~~~~~~~~sg~p~~rvi 144 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV---NTTVAIAAEVLKKAGVYDKNKLF 144 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---HHHHHHHHHHHHHhcCCCHHHEE
Confidence 8988866665321 5678999999999999999999997 433322 23442 224477
Q ss_pred EeCC
Q 009138 522 ASGS 525 (542)
Q Consensus 522 ASGs 525 (542)
++|.
T Consensus 145 g~~~ 148 (312)
T PRK05086 145 GVTT 148 (312)
T ss_pred eeec
Confidence 7774
No 67
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.26 E-value=0.083 Score=51.42 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=65.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCC--------ccCCchhchhhcc---
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--------LESLQHFKKPWAH--- 447 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R--------~~~l~~~k~~fA~--- 447 (542)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+ ..+. .+++-..|..-+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHV-DLSNLQRQILFTEEDVGRPKVEVAAQRL 84 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEE-cccchhhhhccChhhCCChHHHHHHHHH
Confidence 478999999999999999999999774 75 68999998722 1110 0011111111110
Q ss_pred -c----------cCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 448 -E----------HEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 448 -~----------~~~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
. .... .++.+.++. .|++|.+... .=+..++..++.....|.|++-.
T Consensus 85 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d~--~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 85 RELNSDIQVTALKERVTAENLELLINN--VDLVLDCTDN--FATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred HHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 0111 235566665 8999887642 34556677777777899998754
No 68
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.15 E-value=0.19 Score=52.38 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=++-.+.+++..++|++|.| ..|.-+|.++.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 457788888999999999999999999999 999999999964 253 35566442
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
..+|.+.++. +|++|...+.++.+++++|+ +.-+|+=..
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk------~GavVIDvG 229 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK------KGAVVVDIG 229 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCcEEEEee
Confidence 1247788887 99999999999999999994 556665544
No 69
>PLN02928 oxidoreductase family protein
Probab=94.14 E-value=0.5 Score=49.97 Aligned_cols=122 Identities=12% Similarity=0.207 Sum_probs=79.9
Q ss_pred cchHHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEE
Q 009138 360 QGTASVVLAGLISAMKF----------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (542)
Q Consensus 360 QGTaaVvLAgll~Alr~----------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~l 423 (542)
+.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+.. .|+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~a-----fG~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRP-----FGV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhh-----CCC-------EEEE
Confidence 45666777777777663 2457999999999999999999999854 264 6888
Q ss_pred EcccccccCCCccCC--c-hhchhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 424 VDSKGLIVSSRLESL--Q-HFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 424 vDskGLi~~~R~~~l--~-~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
+|+.. .......+ + ..-..+........+|.|+++. .|+++-.- ...+.|+++.++.|. +..+|.=
T Consensus 188 ~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lIN 260 (347)
T PLN02928 188 TRRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVN 260 (347)
T ss_pred ECCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEE
Confidence 88742 01000000 0 0000111111134689999998 89998652 224799999999996 5678887
Q ss_pred cCCC
Q 009138 497 LSNP 500 (542)
Q Consensus 497 LSNP 500 (542)
.|.-
T Consensus 261 vaRG 264 (347)
T PLN02928 261 IARG 264 (347)
T ss_pred CCCc
Confidence 7753
No 70
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.88 E-value=0.38 Score=50.66 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc--ccCCCCCHHH
Q 009138 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHEPVKELVD 457 (542)
Q Consensus 381 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~--~~~~~~~L~e 457 (542)
++-.||+|+|| |..|..+|..|+. .|+ ...+.|+|.+ .. ++-.-+|.+... ... ......+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHH
Confidence 34469999999 9999999987753 243 3679999982 21 111112332211 111 1111133478
Q ss_pred HHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 458 AVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
++++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8988 8988855555322 4568899999999999999999997
No 71
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.77 E-value=0.56 Score=50.53 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=77.0
Q ss_pred CCceeecCC---cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 351 THLVFNDDI---QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 351 ~~~~FNDDi---QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+|..
T Consensus 81 gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a-----~G~-------~V~~~Dp~ 148 (381)
T PRK00257 81 GITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRG-----LGW-------KVLVCDPP 148 (381)
T ss_pred CCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEECCc
Confidence 455555322 234445789999999999999999999999999999999999864 365 67888863
Q ss_pred ccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEc---c-----CCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 428 GLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT---S-----GQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 428 GLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~---S-----~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
.- .. + ......+|.|+++. .|+++=. . ..-+.|+++.+..|. +..++.=.|.
T Consensus 149 ~~---~~-~-----------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR 208 (381)
T PRK00257 149 RQ---EA-E-----------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR 208 (381)
T ss_pred cc---cc-c-----------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC
Confidence 10 00 0 00122467777775 6766511 1 123577788777775 5667665554
No 72
>PRK15076 alpha-galactosidase; Provisional
Probab=93.38 E-value=0.21 Score=54.33 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=76.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch-hchhhccccC-----CCCCHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAHEHE-----PVKELVD 457 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~-~k~~fA~~~~-----~~~~L~e 457 (542)
.||.|+|||+.|... .++..+....++ +-..++|+|.+- +|.+.... .+..++.... -.+++.+
T Consensus 2 ~KIaIIGaGsvg~~~--~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTK--NLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHH--HHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999985443 333333221233 235799999752 22110000 1111111111 1257889
Q ss_pred HHhccCCcEEEEccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEEcCCC
Q 009138 458 AVNAIKPTILIGTSGQGRT-------------------------------------FTKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~g~-------------------------------------Fteevv~~Ma~~~erPIIFaLSNP 500 (542)
++++ +|++|=..+++|. .=.|+++.|.++++..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9987 8888766555532 114778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEeC-CCC
Q 009138 501 TSQSECTAEEAYTWSQGRAIFASG-SPF 527 (542)
Q Consensus 501 t~~aEct~edA~~wt~GraIfASG-spf 527 (542)
. .+..+-++.+.+ .-+|.+| .|.
T Consensus 150 ~---divt~~~~~~~~-~rviG~c~~~~ 173 (431)
T PRK15076 150 M---AMNTWAMNRYPG-IKTVGLCHSVQ 173 (431)
T ss_pred H---HHHHHHHhcCCC-CCEEEECCCHH
Confidence 6 455555556643 4578888 554
No 73
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.32 E-value=0.14 Score=50.13 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+|++.||+|+|+|..|..||..|+.+ |+ +++.++|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 468899999999999999999999774 75 689999987
No 74
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.19 E-value=0.52 Score=49.40 Aligned_cols=123 Identities=22% Similarity=0.280 Sum_probs=79.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccC--CCCCHHHHHhc
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE--PVKELVDAVNA 461 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~--~~~~L~eaV~~ 461 (542)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+ + .++-.-+|.+.. .+.+-.. .-.++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 3679999998 3 232221244433 1111111 11346788887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC----HHHHhcccCCc--EEE
Q 009138 462 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECT----AEEAYTWSQGR--AIF 521 (542)
Q Consensus 462 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct----~edA~~wt~Gr--aIf 521 (542)
.|++|=+.+.+ |- .-+++++.+.++++..+|+-.|||. .+. .+-++++++=- -+|
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv---Dv~~~i~t~~~~~~s~~p~~rvi 143 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV---NSTVPIAAEVLKKAGVYDPKRLF 143 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---hhHHHHHHHHHHHhcCCCHHHEE
Confidence 89888666654 21 2346778888899999999999996 554 55556655321 377
Q ss_pred EeCC
Q 009138 522 ASGS 525 (542)
Q Consensus 522 ASGs 525 (542)
++|.
T Consensus 144 G~~~ 147 (310)
T cd01337 144 GVTT 147 (310)
T ss_pred eeec
Confidence 7764
No 75
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.06 E-value=0.19 Score=50.81 Aligned_cols=127 Identities=21% Similarity=0.256 Sum_probs=67.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhc----hhhccc-----------
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAHE----------- 448 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k----~~fA~~----------- 448 (542)
+||.|+|+|..|.+||..++.. | .+++++|.+- .+-+.+.... ...++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 65 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIKQ----EQLESAQQEIASIFEQGVARGKLTEAARQAA 65 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCCH----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4799999999999999998653 5 3588888741 1101111000 000000
Q ss_pred ---cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCC
Q 009138 449 ---HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (542)
Q Consensus 449 ---~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASGs 525 (542)
.....++.++++. .|++|=+-...-...+++++.+.+......|++ ||..+ ..+++.-++..-..=|....
T Consensus 66 ~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~g~h 139 (288)
T PRK09260 66 LARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVIAMH 139 (288)
T ss_pred HhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEEEEe
Confidence 0112467788887 888885433221234455666666555444543 34331 44444444333323355556
Q ss_pred CCCCccc
Q 009138 526 PFDPFEY 532 (542)
Q Consensus 526 pf~pv~~ 532 (542)
+|.|+..
T Consensus 140 ~~~Pv~~ 146 (288)
T PRK09260 140 FFNPVHK 146 (288)
T ss_pred cCCCccc
Confidence 7777743
No 76
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.04 E-value=0.88 Score=49.09 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 360 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+.. .|+ ++..+|.. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a-----~G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEA-----LGI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEECCc------ccc--c
Confidence 345666889999988888999999999999999999999999964 365 67788852 111 0
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEE---ccC-----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIG---TSG-----QGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG---~S~-----~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
. ......+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|.
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR 208 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR 208 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC
Confidence 0 00112357777665 666651 111 23567777777775 4566665544
No 77
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.98 E-value=0.6 Score=46.45 Aligned_cols=109 Identities=20% Similarity=0.338 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhC---------CCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCC
Q 009138 364 SVVLAGLISAMKFLG---------GSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 433 (542)
Q Consensus 364 aVvLAgll~Alr~~g---------~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~ 433 (542)
-+|-.|++.=|+..+ .+++.++++++|-+. .|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 445566666666554 489999999999875 56677777754 24 358899999988876
Q ss_pred CccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEE
Q 009138 434 RLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 434 R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIF 495 (542)
+...+.+.+.+. .+.-.+|.|.++. +|++|-.-+.++. ++.|+|+ +.-||+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik------~GavVI 153 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK------DGAICI 153 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC------CCcEEE
Confidence 643332111100 0111248899997 9999999999998 8999997 455664
No 78
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.90 E-value=0.26 Score=53.26 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=73.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc------CCCCCHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH------EPVKELVDA 458 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~------~~~~~L~ea 458 (542)
||.|+|||+.|.+.+- +..+..... .+-.+++|+|.+- ++.+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999888653 111111011 1235799999752 22111111111111111 113578999
Q ss_pred HhccCCcEEEEccCCCC---------------CC---------------------CHHHHHHHHcCCCCcEEEEcCCCCC
Q 009138 459 VNAIKPTILIGTSGQGR---------------TF---------------------TKEVVEAMASLNEKPIIFSLSNPTS 502 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g---------------~F---------------------teevv~~Ma~~~erPIIFaLSNPt~ 502 (542)
+++ +|++|=.-..++ +| -.++.+.|.+++++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 987 898875444221 12 127777788888999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEEeC
Q 009138 503 QSECTAEEAYTWSQGRAIFASG 524 (542)
Q Consensus 503 ~aEct~edA~~wt~GraIfASG 524 (542)
-+..+-+++.++ .-++.+|
T Consensus 149 --~i~t~~~~k~~~-~rviG~c 167 (423)
T cd05297 149 --AELTWALNRYTP-IKTVGLC 167 (423)
T ss_pred --HHHHHHHHHhCC-CCEEEEC
Confidence 455555667776 5578887
No 79
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.87 E-value=0.2 Score=51.30 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=73.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCC-C------------ccCCchhchhhccc-c
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-R------------LESLQHFKKPWAHE-H 449 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~-R------------~~~l~~~k~~fA~~-~ 449 (542)
.+|.|+|+|..|.++|..++.. |. +++++|..--.... + ...+++.....+.. .
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i 70 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARI 70 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCe
Confidence 3799999999999999998763 53 58888875110000 0 00000000000000 0
Q ss_pred CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCCCCCC
Q 009138 450 EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 529 (542)
Q Consensus 450 ~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASGspf~p 529 (542)
....++.++++. .|++|=+....-.+.+++++.+.+..+.-+|+. ||-. + ..+.+.-+...+.-.|....||.|
T Consensus 71 ~~~~~~~~a~~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts--~-~~~~~la~~~~~~~~~~~~hp~~p 144 (308)
T PRK06129 71 RVTDSLADAVAD--ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS--A-LLASAFTEHLAGRERCLVAHPINP 144 (308)
T ss_pred EEECcHHHhhCC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC--C-CCHHHHHHhcCCcccEEEEecCCC
Confidence 123578888886 788775443222366777777776666667774 5532 2 234444444444556777788887
Q ss_pred cc
Q 009138 530 FE 531 (542)
Q Consensus 530 v~ 531 (542)
..
T Consensus 145 ~~ 146 (308)
T PRK06129 145 PY 146 (308)
T ss_pred cc
Confidence 64
No 80
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.74 E-value=0.24 Score=51.39 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=77.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc---CCCCCHHHHHh
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAVN 460 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~---~~~~~L~eaV~ 460 (542)
.||.|+|+|..|.++|-.++.. |+ + ++.++|..--+.+++.-++.+ ...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999988652 54 2 599999832222211000110 00110000 11246766 66
Q ss_pred ccCCcEEEEccCCC---C-C------C----CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEeC
Q 009138 461 AIKPTILIGTSGQG---R-T------F----TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASG 524 (542)
Q Consensus 461 ~vkPtvLIG~S~~~---g-~------F----teevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraIfASG 524 (542)
. .|++|=+.+.+ | . + =+++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 88887555533 1 1 2 245667788889999999999997 788888888742 23488888
Q ss_pred C
Q 009138 525 S 525 (542)
Q Consensus 525 s 525 (542)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 81
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.73 E-value=0.58 Score=47.69 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=67.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchh----hc---c---------
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP----WA---H--------- 447 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~----fA---~--------- 447 (542)
++|.|+|+|..|.+||..++.. |. +++++|.+- . .+...+.. +. .
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME----G---ALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH----H---HHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5799999999999999998653 53 588888631 1 11111111 00 0
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCCC
Q 009138 448 EHEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSP 526 (542)
Q Consensus 448 ~~~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASGsp 526 (542)
......++.++++. .|++| ++..... ..+++++.++...+.-.|+. ||..+ .+.++.-++.....-|..+-|
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~~~~ii~-s~tsg---~~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCDPDTIFA-TNTSG---LPITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCCCCcEEE-ECCCC---CCHHHHHhhcCCcccEEEEcc
Confidence 00112467777776 67776 4443321 35667777766554444442 44332 223344444433333555567
Q ss_pred CCCccc
Q 009138 527 FDPFEY 532 (542)
Q Consensus 527 f~pv~~ 532 (542)
+.|...
T Consensus 139 ~~p~~~ 144 (311)
T PRK06130 139 FTPADV 144 (311)
T ss_pred CCCCcc
Confidence 777654
No 82
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.70 E-value=0.25 Score=50.96 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|++.+++..+..+++.+++++|||-|+.+|+-.+.. .|+ ++|+++|+.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4667788888888999999999999998887776644 365 689999984
No 83
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.68 E-value=0.57 Score=52.43 Aligned_cols=175 Identities=15% Similarity=0.226 Sum_probs=89.8
Q ss_pred cccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHHHHHHHcCCCceee--cCCcchHHHH
Q 009138 289 EKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVV 366 (542)
Q Consensus 289 e~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaVv 366 (542)
+.|..+-.++++-|+-.. .++++.+ .++ .-.+|-+|.+-. + .|. .+..+|. ..|-|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~~ll~~l----~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----PELMEKL----AAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----HHHHHHH----HHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 445566677777775331 2333333 322 124466665531 0 111 1222222 3455666665
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch-
Q 009138 367 LAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH- 440 (542)
Q Consensus 367 LAgll~Alr~~g-----~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~- 440 (542)
.|+=.-.-...| ......|++|+|+|.+|+..+..+.. .|. ++.++|.+.-.. .+.+.+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rl-e~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVK-EQVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHH-HHHHHcCCe
Confidence 553332222222 13456899999999999998877754 252 477777764311 00001100
Q ss_pred -----------hchhhccccCC------CCCHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEEEcC
Q 009138 441 -----------FKKPWAHEHEP------VKELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 441 -----------~k~~fA~~~~~------~~~L~eaV~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLS 498 (542)
...-||+...+ ..-+.|.++. .|++|++.-++| +.|+|+++.|.. .-+|.=||
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp---GsvIVDlA 284 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA---GSVIVDLA 284 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC---CCEEEEee
Confidence 00112221100 0125566665 999999994443 599999999984 33444454
No 84
>PRK08328 hypothetical protein; Provisional
Probab=92.65 E-value=0.069 Score=53.15 Aligned_cols=54 Identities=24% Similarity=0.465 Sum_probs=42.6
Q ss_pred HHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEE
Q 009138 345 LEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (542)
Q Consensus 345 L~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lv 424 (542)
++||..++..|..+. -.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877776665421 2467789999999999999999999874 75 689999
Q ss_pred ccc
Q 009138 425 DSK 427 (542)
Q Consensus 425 Dsk 427 (542)
|.+
T Consensus 58 D~D 60 (231)
T PRK08328 58 DEQ 60 (231)
T ss_pred cCC
Confidence 976
No 85
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.64 E-value=0.29 Score=48.28 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+|++.+|+++|+|..|..||+.|+.. |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999764 76 689999987
No 86
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.57 E-value=0.19 Score=46.77 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=51.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhch--hhccc---cCC---CCCHH
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--PWAHE---HEP---VKELV 456 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~--~fA~~---~~~---~~~L~ 456 (542)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... .+. ..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 689999999999999999763 4 46666666531111 1111111 11110 111 25899
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 009138 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 489 (542)
Q Consensus 457 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 489 (542)
+++++ +|++| +.. +-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99997 78776 443 3356789999998744
No 87
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.54 E-value=0.19 Score=53.07 Aligned_cols=99 Identities=22% Similarity=0.303 Sum_probs=64.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch-------------hchhh
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-------------FKKPW 445 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~-------------~k~~f 445 (542)
.+|++.+|+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+ +|+. .|..-
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~v-e~s---NL~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYV-EWS---NLQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcc-ccc---ccCccccccHHHccCCccHHHH
Confidence 478899999999999999999999875 75 68999999742 111 1110 01100
Q ss_pred c----cc----------cCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 446 A----HE----------HEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 446 A----~~----------~~~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
| +. .... .++.+.++. .|++|-++. ..-+..++..++.....|.|++
T Consensus 85 a~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D--~~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 85 AKEHLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATD--NFDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 0 00 0011 246677765 788887764 2335566777777777888876
No 88
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.53 E-value=1.2 Score=45.66 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..||.|+|+|..|.++|..+... |. ++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 45899999999999999999764 53 56677764
No 89
>PRK08223 hypothetical protein; Validated
Probab=92.52 E-value=0.24 Score=51.56 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeE
Q 009138 342 FDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 421 (542)
Q Consensus 342 f~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i 421 (542)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6677788766655543322 578899999999999999999999875 76 689
Q ss_pred EEEcccccccCCCc-------cCCchhchhhccc-----c---------CCC--CCHHHHHhccCCcEEEEccCCCCC-C
Q 009138 422 WLVDSKGLIVSSRL-------ESLQHFKKPWAHE-----H---------EPV--KELVDAVNAIKPTILIGTSGQGRT-F 477 (542)
Q Consensus 422 ~lvDskGLi~~~R~-------~~l~~~k~~fA~~-----~---------~~~--~~L~eaV~~vkPtvLIG~S~~~g~-F 477 (542)
.++|.+=+=.++-. +++-..|..-|.+ . ..+ .++.+.+++ .|++|= +.... |
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD--~~D~~~~ 130 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVD--GLDFFEF 130 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEE--CCCCCcH
Confidence 99998733222110 1122223222211 0 111 356777776 798883 33321 2
Q ss_pred -CHHHHHHHHcCCCCcEEEEcC
Q 009138 478 -TKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 478 -teevv~~Ma~~~erPIIFaLS 498 (542)
+.-.|-..|.....|.|.+-.
T Consensus 131 ~~r~~ln~~c~~~~iP~V~~~~ 152 (287)
T PRK08223 131 DARRLVFAACQQRGIPALTAAP 152 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEec
Confidence 567777788778899998743
No 90
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.48 E-value=0.65 Score=48.79 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=78.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc--ccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL--i~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (542)
||.|.|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532222347999998741 11221112444332332221111467888988
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 009138 462 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 515 (542)
Q Consensus 462 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wt 515 (542)
.|++|=+.+.+ |- +-+++++.|++++ +..||+-.|||- .+..--+++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 140 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKNA 140 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 89888665554 21 2367888888994 999999999996 77777777765
No 91
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.35 E-value=0.24 Score=52.50 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=64.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCC--------ccCCchhchhhcc---
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--------LESLQHFKKPWAH--- 447 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R--------~~~l~~~k~~fA~--- 447 (542)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+= |..+. .+++-..|..-+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 367889999999999999999999775 75 6899999862 11110 0011111211111
Q ss_pred --ccC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 448 --EHE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 448 --~~~---------~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
-.+ .. .++.+.++. .|++|-++... =+...+..++.....|+|++-
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 001 11 235556665 89998876532 245677788888889998873
No 92
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.32 E-value=0.53 Score=49.44 Aligned_cols=94 Identities=14% Similarity=0.286 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=++-.|.+|+.++|+|+|.| ..|..+|.+|... |. .+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC--------C-----
Confidence 356788889999999999999999999996 9999999999753 53 57777653 0
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS-NP 500 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS-NP 500 (542)
.++.|+++. +|++|=.-+.++.+++++++ +.-||.=+| |+
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvgin~ 234 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVGINR 234 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEecccc
Confidence 168999987 99999999989999998853 677888887 54
No 93
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.28 E-value=0.42 Score=45.36 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=74.0
Q ss_pred HHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCC
Q 009138 374 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK 453 (542)
Q Consensus 374 lr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~ 453 (542)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..-- . + .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~-----~---~---~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKP-----E---E---GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHH-----H---H---HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCCh-----h---h---hcccccceee
Confidence 34567889999999999999999999999642 64 68888875220 0 0 1111111235
Q ss_pred CHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEE
Q 009138 454 ELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAI 520 (542)
Q Consensus 454 ~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraI 520 (542)
+|.|+++. .|+++=.- ..-+.|+++.++.|. +..++.-.|.-.---|..--+|++ +|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVARGELVDEDALLDALE--SGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSSGGGB-HHHHHHHHH--TTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccchhhhhhhHHHHHHh--hccCc
Confidence 89999987 89887442 123799999999997 567777666643222332333433 46554
No 94
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.23 E-value=0.52 Score=49.13 Aligned_cols=93 Identities=15% Similarity=0.311 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcchH-HHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGsA-g~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-.|++.-++..|.++++.+++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 346778889999999999999999999999998 9999999864 243 45565442
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
..+|.+.++. +|++|-..+.++.|+.++++ +.-+|+=..
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik------~gavVIDVG 230 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK------PGATVIDVG 230 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEcc
Confidence 1357788887 99999999999999998886 455665544
No 95
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.17 E-value=0.94 Score=47.61 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=83.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc--cCCCccCCchhchhhccccCCCCCHHHHHhc
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi--~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (542)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .++-.-+|.+...++........+..+++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999988652 44100000168999974321 1111112443332332111111256788887
Q ss_pred cCCcEEEEccCCCCC--C------------CHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEeC
Q 009138 462 IKPTILIGTSGQGRT--F------------TKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASG 524 (542)
Q Consensus 462 vkPtvLIG~S~~~g~--F------------teevv~~Ma~~-~erPIIFaLSNPt~~aEct~edA~~wt~G--raIfASG 524 (542)
.|++|=+.+.+.. - =+++++.|+++ ++.-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8999866665421 1 24677888888 4899999999996 7888888887733 2388888
Q ss_pred CCCC
Q 009138 525 SPFD 528 (542)
Q Consensus 525 spf~ 528 (542)
.-.+
T Consensus 151 t~LD 154 (324)
T TIGR01758 151 TRLD 154 (324)
T ss_pred eehH
Confidence 6544
No 96
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.15 E-value=0.42 Score=49.03 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=43.0
Q ss_pred CCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 351 ~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+..=+|-| ..|++.+++..+..++++++||+|||-||.+||..+.. .|. ++|.++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34566777 45677888877778889999999999777777666643 364 579999874
No 97
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.15 E-value=0.54 Score=46.43 Aligned_cols=38 Identities=37% Similarity=0.535 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999774 75 789999987
No 98
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.10 E-value=0.39 Score=51.36 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=66.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCC-c-------cCCchhchhhccc--
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-L-------ESLQHFKKPWAHE-- 448 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R-~-------~~l~~~k~~fA~~-- 448 (542)
.+|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-|..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999774 75 68999998733 2111 0 0111222222110
Q ss_pred ---cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 449 ---HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 449 ---~~---------~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
.+ .+ .++.+.+++ .|++|.++.- .=+.-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 01 11 245667776 8999887753 235566777777778999876
No 99
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.04 E-value=4.2 Score=44.61 Aligned_cols=187 Identities=22% Similarity=0.228 Sum_probs=125.7
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCc-cHH-HHHHHHcCC-----Ccee----------ecCCcchHHHH
Q 009138 304 RAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANH-NAF-DLLEKYGTT-----HLVF----------NDDIQGTASVV 366 (542)
Q Consensus 304 R~~G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~-nAf-~lL~ryr~~-----~~~F----------NDDiQGTaaVv 366 (542)
..+-.|-.+|...|++++.+.-||+.-|-=+|+... ... -+.+.|+.- .+|| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 356677889999999999999999999999999852 111 255666531 2222 22223344333
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchh--
Q 009138 367 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-- 444 (542)
Q Consensus 367 LAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~-- 444 (542)
.-++-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+=|++|.|+... .|+..+..
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 334448888889889999999999999999999988653 53 4566779999888873 35533322
Q ss_pred ---hccc-----cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 009138 445 ---WAHE-----HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (542)
Q Consensus 445 ---fA~~-----~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~aEct~edA~~ 513 (542)
+.+- .+.+.+ |.+-.+..||||=+.. ++.+|++-.+.+.. + +|.=-+| |+ +-.+++.+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~---t~eA~~i~~ 325 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPT---TPEADEILL 325 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCC---CHHHHHHHH
Confidence 2110 111112 3344467899997666 56999999988863 2 8888888 77 344555554
No 100
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.03 E-value=0.45 Score=49.50 Aligned_cols=109 Identities=17% Similarity=0.308 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-.|++.=++-.+.+|+..+++++|.+ .-|.-+|.++.. .| ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecC------------
Confidence 34467888889999999999999999999999 788888888754 24 346666653
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC---CCCCCCCHHHHhc
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS-NP---TSQSECTAEEAYT 513 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS-NP---t~~aEct~edA~~ 513 (542)
..+|.+.++. +|++|+.-+.++.+|+++|+ +.-+|.=.+ |. .----+.+|++.+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVgi~~~~gkl~GDvdf~~~~~ 243 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVGINQVNGKLCGDVDFDAVKE 243 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEeeccccCCCCcCCccHHHHHh
Confidence 0368999987 99999999989999999983 666776555 32 1113445566644
No 101
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.99 E-value=1.1 Score=46.97 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=80.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc--cCCCccCCchhchhhccccCCCCCHHHHHh
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi--~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~ 460 (542)
-||+|.|| |..|..+|..|+.. |+--.+....++++|.+.-. ..+-.-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 36999999 99999999988652 43100111379999985421 111100122211122111111257889999
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEe
Q 009138 461 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 523 (542)
Q Consensus 461 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wt~G--raIfAS 523 (542)
+ +|++|=+.+.+.. -| +++++.|.+++ ..-||+-.|||. .+...-+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 7 9999866665422 23 56778888885 699999999996 7777777776532 112666
Q ss_pred CCC
Q 009138 524 GSP 526 (542)
Q Consensus 524 Gsp 526 (542)
|.-
T Consensus 153 gt~ 155 (325)
T cd01336 153 LTR 155 (325)
T ss_pred eeh
Confidence 653
No 102
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.81 E-value=0.69 Score=48.32 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-.|++..++-.+.+|+..++|++|.+. .|..+|.+|.. .|. .+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc-------------
Confidence 34678899999999999999999999999998 89999999864 243 46677642
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCC---CCCCCHHHHhcccC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS-NPTS---QSECTAEEAYTWSQ 516 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS-NPt~---~aEct~edA~~wt~ 516 (542)
.++|.+.+++ +|++|-..+.++.+++++|+ +..+|.=.. |... ---+.+|.+.+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk------~gavVIDvGin~~~gkl~GDvd~~~~~~--- 255 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK------EGAVIFDVGITKEEDKVYGDVDFENVIK--- 255 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC------CCcEEEEecccccCCCccCCcCHHHHHh---
Confidence 1257888887 99999999999999999886 456665433 4320 12356666543
Q ss_pred CcEEEEeCC
Q 009138 517 GRAIFASGS 525 (542)
Q Consensus 517 GraIfASGs 525 (542)
++-+.|.-
T Consensus 256 -~a~~iTPV 263 (287)
T PRK14176 256 -KASLITPV 263 (287)
T ss_pred -hceEcCCC
Confidence 34444443
No 103
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.79 E-value=0.36 Score=49.74 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|++.+++..+..+++.+++++|||-|+-+|+-.|.+ .|+ ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 3567777755556888999999999999999887764 365 689999984
No 104
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=91.60 E-value=1.4 Score=46.17 Aligned_cols=126 Identities=22% Similarity=0.312 Sum_probs=79.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc--CCCCCHHHHHhc
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 461 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~--~~~~~L~eaV~~ 461 (542)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+... ..+-. ....++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 254 25799999876 2222112444321 11100 011246788888
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHHHHhcccC--CcEEEEeC
Q 009138 462 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAEEAYTWSQ--GRAIFASG 524 (542)
Q Consensus 462 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~-~aEct~edA~~wt~--GraIfASG 524 (542)
.|++|=+.+.+.. .=+++.+.+.++++..||+-.|||.. ++.+..+-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 9988855555421 22467778888999999999999972 12226666666542 12378887
Q ss_pred C
Q 009138 525 S 525 (542)
Q Consensus 525 s 525 (542)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 5
No 105
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.41 E-value=0.65 Score=44.34 Aligned_cols=96 Identities=23% Similarity=0.266 Sum_probs=56.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCc-------cCCchhchhhcc----c-cC--
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL-------ESLQHFKKPWAH----E-HE-- 450 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~-------~~l~~~k~~fA~----~-~~-- 450 (542)
||+++|+|..|..||+.|+.. |+ .+|.++|.+= +..+.- +++...|..-+. . .+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v 68 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFDV-VEPSNLNRQQYFLSQIGEPKVEALKENLREINPFV 68 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcCcchhcccccHhhCCChHHHHHHHHHHHHCCCC
Confidence 689999999999999999764 75 6799999873 222110 011111211111 0 00
Q ss_pred -------C--CCCHHHHHhccCCcEEEEccCCCCCCCH-HHHHHHHcCCCCcEEEE
Q 009138 451 -------P--VKELVDAVNAIKPTILIGTSGQGRTFTK-EVVEAMASLNEKPIIFS 496 (542)
Q Consensus 451 -------~--~~~L~eaV~~vkPtvLIG~S~~~g~Fte-evv~~Ma~~~erPIIFa 496 (542)
. ..++.+.++. .|++|.+.. ..-++ .+.+.+.+....|+|++
T Consensus 69 ~i~~~~~~~~~~~~~~~l~~--~DlVi~~~d--~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 69 KIEAINIKIDENNLEGLFGD--CDIVVEAFD--NAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred EEEEEEeecChhhHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE
Confidence 0 1245566765 889998743 22333 35555666556899987
No 106
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.40 E-value=0.5 Score=49.36 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=80.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc--CCCCCHHHHHhc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 461 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~--~~~~~L~eaV~~ 461 (542)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999988754 255 3679999974211111111233322 332211 11135554 776
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEeCC
Q 009138 462 IKPTILIGTSGQGRT--FT------------KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 525 (542)
Q Consensus 462 vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraIfASGs 525 (542)
+|++|=+.+.+.. -| +++++.+.+++.+.+|+-.|||. .....-+++++ .-+-||++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecCc
Confidence 8998755554311 23 36778888999999999999997 67777777763 2234788876
Q ss_pred CC
Q 009138 526 PF 527 (542)
Q Consensus 526 pf 527 (542)
-.
T Consensus 147 ~L 148 (312)
T cd05293 147 NL 148 (312)
T ss_pred hH
Confidence 43
No 107
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.28 E-value=0.97 Score=47.18 Aligned_cols=115 Identities=12% Similarity=0.166 Sum_probs=68.7
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc
Q 009138 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (542)
Q Consensus 369 gll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~ 448 (542)
|.+++..+... ...+++|+|+|..|..+++.+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999999998877543 243 578888773 222 22222222211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 009138 449 ----HEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (542)
Q Consensus 449 ----~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 510 (542)
.....+++++++. .|++|-++... ..|+.++++. .-.|.++...+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 1124689999986 99999775432 3677777753 22455554322 246888765
No 108
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.15 E-value=0.52 Score=47.90 Aligned_cols=88 Identities=23% Similarity=0.343 Sum_probs=55.3
Q ss_pred HHHHHHHHHH-hCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhh
Q 009138 367 LAGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 445 (542)
Q Consensus 367 LAgll~Alr~-~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~f 445 (542)
..|++++++. .+..+.+.+++++|||.+|-+++..+.. .|+ .+|+++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3456777764 5678999999999999999888888864 364 579999885 222 11222222
Q ss_pred cccc-CCC-CCHHHHHhccCCcEEEEccCCC
Q 009138 446 AHEH-EPV-KELVDAVNAIKPTILIGTSGQG 474 (542)
Q Consensus 446 A~~~-~~~-~~L~eaV~~vkPtvLIG~S~~~ 474 (542)
.... -.. .++.+++.. .|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 133455554 89999988755
No 109
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.85 E-value=0.83 Score=45.95 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=62.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch-----------hchhhcc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-----------FKKPWAH 447 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~-----------~k~~fA~ 447 (542)
.+|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+=+ ..+ +|+. .|..-|.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~RQ~l~~~~diG~~Ka~~a~ 84 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SLS---NLQRQVLHSDANIGQPKVESAK 84 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-ccc---CcccceeeeHhhCCCcHHHHHH
Confidence 468889999999999999999999774 75 68999998733 221 1221 1111110
Q ss_pred ----c----------cCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 448 ----E----------HEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 448 ----~----------~~~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
. .... .++.+.++. .|++|-++.. .-+..++-.++.....|+|++-+
T Consensus 85 ~~l~~inp~v~i~~~~~~i~~~~~~~~~~~--~DlVvd~~D~--~~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 85 DALTQINPHIAINPINAKLDDAELAALIAE--HDIVVDCTDN--VEVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred HHHHHHCCCcEEEEEeccCCHHHHHHHhhc--CCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 0111 134455554 7777766643 23556666677667788887644
No 110
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.81 E-value=0.45 Score=48.73 Aligned_cols=119 Identities=20% Similarity=0.358 Sum_probs=73.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCcc----CCchhchhhcccc---CCCCCHHHH
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE----SLQHFKKPWAHEH---EPVKELVDA 458 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~----~l~~~k~~fA~~~---~~~~~L~ea 458 (542)
|.|+|||..|.++|..++. .|+ + .++++|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5789999999999988764 254 1 69999986 22210 011110 000000 011354 45
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 009138 459 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraIfA 522 (542)
++. +|++|=+.+.+.. +-+++++.|.+++...+|+-.|||. ......++++++ -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 776 8998843333211 2347888999999999999999997 666666667652 124888
Q ss_pred eCCC
Q 009138 523 SGSP 526 (542)
Q Consensus 523 SGsp 526 (542)
+|.-
T Consensus 139 lgt~ 142 (300)
T cd01339 139 MAGV 142 (300)
T ss_pred ecch
Confidence 8853
No 111
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.68 E-value=0.6 Score=48.68 Aligned_cols=124 Identities=16% Similarity=0.299 Sum_probs=79.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-ccCC--CCCHHHHHhc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEP--VKELVDAVNA 461 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~-~~~~--~~~L~eaV~~ 461 (542)
||.|+|||..|..+|-+|+. .|+ .+.+.|+|.+-=..++-.-+|.+.. .|.. ..-. .++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998865 255 3579999974111111111233322 2221 0001 134 466776
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 009138 462 IKPTILIGTSGQG---RTFT--------------KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (542)
Q Consensus 462 vkPtvLIG~S~~~---g~Ft--------------eevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraIfA 522 (542)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .+..--+++++. -+-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 89988666653 3 23 57888888999999999999996 777777777652 234666
Q ss_pred eCCC
Q 009138 523 SGSP 526 (542)
Q Consensus 523 SGsp 526 (542)
||.-
T Consensus 143 ~gt~ 146 (307)
T cd05290 143 TGTM 146 (307)
T ss_pred ccch
Confidence 6654
No 112
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.57 E-value=0.94 Score=49.94 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=72.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh------------chhhccc--c
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF------------KKPWAHE--H 449 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~------------k~~fA~~--~ 449 (542)
.||.|+|+|..|.+||..++.+ |. ++.+.|.. .+..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999999763 64 57788873 1111111100 0011110 1
Q ss_pred CCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEeCCC
Q 009138 450 EPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (542)
Q Consensus 450 ~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraIfASGsp 526 (542)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|++.| |+-.+ +++.-+.. .++++ -.-|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~Ss--Tsgi~--~s~l~~~~~~~~r~~--~~hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSS--TSGFL--PSDLQEGMTHPERLF--VAHP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEc--CCCCC--HHHHHhhcCCcceEE--EEec
Confidence 123578899987 88888 5544432 4556666666555545666554 32222 32222222 34444 4478
Q ss_pred CCCccc-CCEEEccc
Q 009138 527 FDPFEY-GDNVFVPG 540 (542)
Q Consensus 527 f~pv~~-~g~~~~pg 540 (542)
|.|+.+ ....+.||
T Consensus 140 ~nP~~~~~Lvevv~g 154 (495)
T PRK07531 140 YNPVYLLPLVELVGG 154 (495)
T ss_pred CCCcccCceEEEcCC
Confidence 888864 23334444
No 113
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.44 E-value=0.4 Score=50.65 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 578899999999999999999999764 75 6899999963
No 114
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.43 E-value=2.1 Score=45.21 Aligned_cols=111 Identities=24% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCceeecCC---cchHHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhh
Q 009138 351 THLVFNDDI---QGTASVVLAGLISAMK------------------FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQ 409 (542)
Q Consensus 351 ~~~~FNDDi---QGTaaVvLAgll~Alr------------------~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~ 409 (542)
-+.|+|-.- +..|=-++|.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 345555543 3344557888888887 567789999999999999999999998553
Q ss_pred cCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHH
Q 009138 410 TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAM 485 (542)
Q Consensus 410 ~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~M 485 (542)
|+ ++..+|.. ..+. .. -........+|.|.++. .|++.-.- ..-|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 65 67888873 1111 00 00111234578888886 88887542 22368888888888
Q ss_pred H
Q 009138 486 A 486 (542)
Q Consensus 486 a 486 (542)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 5
No 115
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.18 E-value=0.7 Score=50.62 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=68.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh-cCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCC-----CCCHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQ-TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~-~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 456 (542)
.||+|+||||+ -...|+..+.+. ..++ ...|+|+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444555555432 2342 3789999975 33322122222223222 112 25899
Q ss_pred HHHhccCCcEEEEccCCC--------------------------CC--------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009138 457 DAVNAIKPTILIGTSGQG--------------------------RT--------FTKEVVEAMASLNEKPIIFSLSNPTS 502 (542)
Q Consensus 457 eaV~~vkPtvLIG~S~~~--------------------------g~--------Fteevv~~Ma~~~erPIIFaLSNPt~ 502 (542)
||+++ +|.+|=.-.+| |. .-.++++.|.+.|+..+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99998 88776332222 32 2258888999999999999999998
Q ss_pred CCCCCH
Q 009138 503 QSECTA 508 (542)
Q Consensus 503 ~aEct~ 508 (542)
..+|-
T Consensus 147 -~~vt~ 151 (437)
T cd05298 147 -AIVAE 151 (437)
T ss_pred -HHHHH
Confidence 44443
No 116
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.16 E-value=0.81 Score=44.67 Aligned_cols=100 Identities=13% Similarity=0.255 Sum_probs=59.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (542)
++.||.|+|+|..|..+|..++.. |.. -.++++++++. + .+.+...++.|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999988642 310 11346656542 0 111222222231 1123567888875
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 462 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
.|++| ++..+. .-+++++.++.+-+..+|+.++.-.
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC
Confidence 78776 445443 4488888887543445777777654
No 117
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.12 E-value=0.5 Score=42.58 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=31.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
++.||+++|+|+-|.-+|+.|+.. |+ .+|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999886 75 78999998733
No 118
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.06 E-value=1 Score=45.37 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCc--------cCCchhchhhcc---
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL--------ESLQHFKKPWAH--- 447 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~--------~~l~~~k~~fA~--- 447 (542)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l 95 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD-TVSLSNLQRQVLHDDATIGQPKVESARAAL 95 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EECcchhhhhhcCChhhCCChHHHHHHHHH
Confidence 478899999999999999999999875 75 689999987 3332210 011111211111
Q ss_pred -c-cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 448 -E-HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 448 -~-~~---------~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
. .+ .. .++.+.++. .|++|.++... -+...+...+..+..|+|.+-++
T Consensus 96 ~~lnp~v~i~~~~~~i~~~~~~~~~~~--~DiVi~~~D~~--~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 96 ARINPHIAIETINARLDDDELAALIAG--HDLVLDCTDNV--ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred HHHCCCCEEEEEeccCCHHHHHHHHhc--CCEEEecCCCH--HHHHHHHHHHHHhCCEEEEeeec
Confidence 0 01 11 134455665 78888877533 24555666666677899887554
No 119
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.91 E-value=1.4 Score=43.14 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=59.8
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhc---cc-c--C--CCCCH
Q 009138 385 RFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---HE-H--E--PVKEL 455 (542)
Q Consensus 385 riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA---~~-~--~--~~~~L 455 (542)
||.|+| +|..|..+|..+++. | .++++.|+. .++ +......+. .. . . ...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999999653 4 467777653 111 211111111 10 0 0 11366
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 009138 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 503 (542)
Q Consensus 456 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~ 503 (542)
.|+++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788876 78776 55444 3457888888654344799999999854
No 120
>PLN02306 hydroxypyruvate reductase
Probab=89.85 E-value=3.4 Score=44.65 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=82.4
Q ss_pred cCCCceeecCC---cchHHHHHHHHHHHHHHh---------------------CCCCCCceEEEeCcchHHHHHHHHHHH
Q 009138 349 GTTHLVFNDDI---QGTASVVLAGLISAMKFL---------------------GGSLADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 349 r~~~~~FNDDi---QGTaaVvLAgll~Alr~~---------------------g~~L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
+..+.+.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 45677777532 234445677777765531 345889999999999999999999865
Q ss_pred HHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc--------c--cCCCCCHHHHHhccCCcEEEEc----
Q 009138 405 EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--------E--HEPVKELVDAVNAIKPTILIGT---- 470 (542)
Q Consensus 405 ~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~--------~--~~~~~~L~eaV~~vkPtvLIG~---- 470 (542)
+| |+ +++.+|...- . .+..+...+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 64 6888887421 0 01110011100 0 0112489999987 9998873
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 471 SGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 471 S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
...-|.|+++.++.|. +..++.=.|.
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~aR 273 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNASR 273 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECCC
Confidence 2334799999999996 5667766654
No 121
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.83 E-value=0.18 Score=47.35 Aligned_cols=98 Identities=22% Similarity=0.375 Sum_probs=54.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc-------------ccccCCCccCCchhchhhcc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-------------GLIVSSRLESLQHFKKPWAH 447 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk-------------GLi~~~R~~~l~~~k~~fA~ 447 (542)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5568999999999999999998653 53 34444542 0111 00000000 00222
Q ss_pred c----cCC--CCCHHHHHhccCCcEEEEcc-----CCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 448 E----HEP--VKELVDAVNAIKPTILIGTS-----GQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 448 ~----~~~--~~~L~eaV~~vkPtvLIG~S-----~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
. ... ...|.+.++. .|++|+.. ..+.+||+|+++.|. +--+|-=+|
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~---~gsvIvDis 139 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK---PGSVIVDIS 139 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS---TTEEEEETT
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC---CCceEEEEE
Confidence 1 111 1468888987 89999753 445699999999997 333444344
No 122
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.82 E-value=0.72 Score=47.95 Aligned_cols=85 Identities=27% Similarity=0.434 Sum_probs=54.5
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhc
Q 009138 369 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (542)
Q Consensus 369 gll~Alr~~g--~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA 446 (542)
|++.+|+-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++ +.+|.+.| .+.|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR----t~~ra~~L---a~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR----TRERAEEL---ADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC----CHHHHHHH---HHHhh
Confidence 5677888766 456689999999999999999888764 64 78999998 35443322 22332
Q ss_pred ccc-----CCCCCHHHHHhccCCcEEEEccCCC
Q 009138 447 HEH-----EPVKELVDAVNAIKPTILIGTSGQG 474 (542)
Q Consensus 447 ~~~-----~~~~~L~eaV~~vkPtvLIG~S~~~ 474 (542)
+.. ....++.+ .+ ..|+||=+...|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 11 489999776655
No 123
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.61 E-value=4.4 Score=42.67 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=78.9
Q ss_pred CCCceeecCC---cchHHHHHHHHHHHHHH-------------------------hCCCCCCceEEEeCcchHHHHHHHH
Q 009138 350 TTHLVFNDDI---QGTASVVLAGLISAMKF-------------------------LGGSLADQRFLFLGAGEAGTGIAEL 401 (542)
Q Consensus 350 ~~~~~FNDDi---QGTaaVvLAgll~Alr~-------------------------~g~~L~d~riv~~GAGsAg~GIA~l 401 (542)
..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 4566666321 23444567777776654 2456899999999999999999999
Q ss_pred HHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCC
Q 009138 402 IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTF 477 (542)
Q Consensus 402 l~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~F 477 (542)
+.. .|+ +++.+|+.. . . .. ...+. -...+|.|+++. .|+++=.-- .-+.|
T Consensus 169 l~~-----~G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 AKG-----FGM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred HHH-----CCC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 864 264 577888741 1 1 10 01111 113478898887 888874421 13688
Q ss_pred CHHHHHHHHcCCCCcEEEEcCCC
Q 009138 478 TKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 478 teevv~~Ma~~~erPIIFaLSNP 500 (542)
.++.++.|. +..++.=.|.=
T Consensus 223 ~~~~~~~mk---~ga~lIN~aRg 242 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTARG 242 (333)
T ss_pred CHHHHhcCC---CCeEEEECcCc
Confidence 889898886 56777766653
No 124
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.49 E-value=1.1 Score=46.74 Aligned_cols=97 Identities=16% Similarity=0.279 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-+|++.=++-.|-+++.+++|++|.+. .|.-+|.||...-. ..| ..+..|+++.
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t------------ 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT------------ 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc------------
Confidence 34677888999999999999999999999764 57777777743100 012 2455665431
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.+|.+.++. +|++|+..+.++.|++|+|+ +.-+|.-.+
T Consensus 196 ------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk------~GavVIDVG 233 (286)
T PRK14184 196 ------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK------PGAVVVDVG 233 (286)
T ss_pred ------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 368999998 99999999999999999993 556665444
No 125
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.40 E-value=0.7 Score=47.85 Aligned_cols=126 Identities=20% Similarity=0.315 Sum_probs=77.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccC-CCCCHHHHHhccC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAIK 463 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~-~~~~L~eaV~~vk 463 (542)
||.|+|+|..|..+|..++. .|+ ...++++|.+-=...+...++.+. .+|-.... ...+. +++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999988765 254 367999997411011100012211 12211100 01344 55776
Q ss_pred CcEEEEccCCCCC----C----------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEeCCCC
Q 009138 464 PTILIGTSGQGRT----F----------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSPF 527 (542)
Q Consensus 464 PtvLIG~S~~~g~----F----------teevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraIfASGspf 527 (542)
.|++|=+.+.+.. . =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-||++|.-.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 7887755444321 1 146788888899999999999996 777777777651 23478887654
No 126
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.40 E-value=1.3 Score=46.24 Aligned_cols=93 Identities=23% Similarity=0.378 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-+|++.=++-.|-+++..+++|+|. |..|.-+|.+|... |. .+.++.+ +.
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t----- 192 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT----- 192 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC-----
Confidence 346777888888999999999999999999 99999999999753 53 3444422 11
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.+|.++++. +|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 193 ------------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 ------------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred ------------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268999998 99999999999999998854 566776665
No 127
>PRK14851 hypothetical protein; Provisional
Probab=89.27 E-value=1.7 Score=50.34 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCc-------cCCchhchhhccc---
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL-------ESLQHFKKPWAHE--- 448 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~-------~~l~~~k~~fA~~--- 448 (542)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|-+=+-.++-. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578899999999999999999999875 76 68999997633222110 1122223222211
Q ss_pred --c---------CCC--CCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEEcC----------CCCCCC
Q 009138 449 --H---------EPV--KELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS----------NPTSQS 504 (542)
Q Consensus 449 --~---------~~~--~~L~eaV~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS----------NPt~~a 504 (542)
. ..+ .++.+.+++ .|++|-...-. .| ++..|...|..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 256677776 89988544311 12 344677777778899998754 675
Q ss_pred CCCHHHHhcccCC
Q 009138 505 ECTAEEAYTWSQG 517 (542)
Q Consensus 505 Ect~edA~~wt~G 517 (542)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5777888887666
No 128
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.24 E-value=1.5 Score=44.86 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=62.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhcc-C
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI-K 463 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~v-k 463 (542)
+|-|+|.|..|..+|..+... |. ++.+.|+. ..+ .+..++. ......++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g~-------~V~~~dr~----~~~---~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----GH-------DCVGYDHD----QDA---VKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----CC-------EEEEEECC----HHH---HHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988653 52 56666653 111 2222211 112234666665432 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHH
Q 009138 464 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAE 509 (542)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~~aEct~e 509 (542)
+|++|= +...+ ..+++++.++.. .+..||+-+||.. ++-+.+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44455 889999888764 3568999999865 454444
No 129
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.19 E-value=1.5 Score=45.73 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-+|++.=++-.+.+|+.+++|++|.+ -.|.-+|.||.. .|. .+.+|+++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567788889999999999999999999998 889999998854 242 34455442 1
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
++|.+.++. +|++|-..+.++.|+.|+|+ +..+|.=.
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk------~gavvIDv 228 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK------EGAIVIDI 228 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC------CCcEEEEe
Confidence 246788887 99999999999999999997 45566443
No 130
>PLN02602 lactate dehydrogenase
Probab=89.16 E-value=1.1 Score=47.86 Aligned_cols=124 Identities=19% Similarity=0.334 Sum_probs=80.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCC---CCHHHHHh
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---KELVDAVN 460 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~---~~L~eaV~ 460 (542)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 355 3579999974211111111233322 22221 111 34544 77
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEe
Q 009138 461 AIKPTILIGTSGQG---RTFTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFAS 523 (542)
Q Consensus 461 ~vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraIfAS 523 (542)
+ +|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-+++++. -+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 89998665543 3 233 7788888999999999999996 777777887763 1447777
Q ss_pred CCC
Q 009138 524 GSP 526 (542)
Q Consensus 524 Gsp 526 (542)
|.-
T Consensus 179 gt~ 181 (350)
T PLN02602 179 GTN 181 (350)
T ss_pred cch
Confidence 743
No 131
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.14 E-value=1.5 Score=45.81 Aligned_cols=93 Identities=18% Similarity=0.338 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-.|++.-++-.|.+++.++++++|.+. .|.-+|.||.. .|. .+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~a-------tVt~chs~------------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----ENA-------TVTYCHSK------------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEeCC-------------
Confidence 34678888999999999999999999999764 67778877754 242 46666542
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
..+|.+.++. +|++|...+.++.|+.|+|+ +..+|+=..
T Consensus 192 -----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik------~gavVIDvG 230 (284)
T PRK14190 192 -----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK------EGAVVIDVG 230 (284)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 1368899997 99999999999999999995 566665443
No 132
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.86 E-value=2.2 Score=44.98 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=64.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHhhcCCChhhccCeEEEEcccccccCCCccCC---chhchhhcccc------C-
Q 009138 384 QRFLFLGAGEAGTGIAELIAL---EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL---QHFKKPWAHEH------E- 450 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~---~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l---~~~k~~fA~~~------~- 450 (542)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-++|++|-+...+.-++ ..+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 3333445421 22446799998877653112 12222222100 0
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 451 ~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
..-++.|.++...+||+|-+++.. ...+-+.+.+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012788988877899999998633 33333334444 4677875
No 133
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.85 E-value=2.1 Score=42.55 Aligned_cols=122 Identities=12% Similarity=0.193 Sum_probs=72.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
.+|.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999988653 43 124678777631 1122222222 11122467777765
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCCCCCCcccC
Q 009138 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYG 533 (542)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASGspf~pv~~~ 533 (542)
+|++| ++..+ ...+++++.+.... ..+|..++|-++ .++.-+|....+=++..-|..|..+.
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~~~ 124 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPALVG 124 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHHHc
Confidence 78776 44444 46778888887554 458889998773 33333444322223345677776653
No 134
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.85 E-value=0.61 Score=48.03 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=54.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhch--------hhccccCCCCCH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--------PWAHEHEPVKEL 455 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~--------~fA~~~~~~~~L 455 (542)
.||.|+|+|+.|.++|..+... |. ++.++|+..= +.+.+....+ .+........++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4799999999999999999763 42 4777776311 1011111100 000001123478
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 456 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
.|+++. .|++|= +... ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~-~v~~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVV-AVPS-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEE-ECch-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 888875 677663 2222 24577777665 344677778864
No 135
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.84 E-value=6.5 Score=41.10 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=77.6
Q ss_pred CCCceeecCC---cchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHHH
Q 009138 350 TTHLVFNDDI---QGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 402 (542)
Q Consensus 350 ~~~~~FNDDi---QGTaaVvLAgll~Alr~~------------------------g~~L~d~riv~~GAGsAg~GIA~ll 402 (542)
..+.+.|--- +.+|=-+++.+|+..|-. +..|.++++.|+|.|..|..||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666321 345666777777765532 2358899999999999999999998
Q ss_pred HHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCC
Q 009138 403 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFT 478 (542)
Q Consensus 403 ~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Ft 478 (542)
. + .|+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ...-|.|+
T Consensus 168 ~-~----fgm-------~V~~~~~~~-----~~~---~-----~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 E-A----FGM-------RVLIGQLPG-----RPA---R-----P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred h-h----CCC-------EEEEECCCC-----Ccc---c-----c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 5 3 265 577777642 100 0 0 12378898887 8888732 22246899
Q ss_pred HHHHHHHHcCCCCcEEEEcCC
Q 009138 479 KEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 479 eevv~~Ma~~~erPIIFaLSN 499 (542)
++.+..|. +..++.=.|.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR 234 (317)
T PRK06487 217 ARELALMK---PGALLINTAR 234 (317)
T ss_pred HHHHhcCC---CCeEEEECCC
Confidence 99999996 5677776655
No 136
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.79 E-value=1.8 Score=43.95 Aligned_cols=137 Identities=16% Similarity=0.200 Sum_probs=71.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh---chhhccc------------
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KKPWAHE------------ 448 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~---k~~fA~~------------ 448 (542)
.+|.|+|||..|.+||..++.. |. +++++|.+--....-.+.+... -..+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~ 71 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIM 71 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHH
Confidence 5799999999999999998663 53 6888987421110000000000 0000000
Q ss_pred --cCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeC
Q 009138 449 --HEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNE-KPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 524 (542)
Q Consensus 449 --~~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~e-rPIIFaLSNPt~~aEct~edA~~wt~GraIfASG 524 (542)
.....++ ++++. +|++| .+..... ..+++++.+.+.+. ..|| .||-. -.+..+.-+.....-=|.-.
T Consensus 72 ~~i~~~~~~-~~~~~--aDlVi-eav~e~~~~k~~~~~~l~~~~~~~~il--~S~ts---g~~~~~la~~~~~~~r~ig~ 142 (291)
T PRK06035 72 ARIRTSTSY-ESLSD--ADFIV-EAVPEKLDLKRKVFAELERNVSPETII--ASNTS---GIMIAEIATALERKDRFIGM 142 (291)
T ss_pred hCcEeeCCH-HHhCC--CCEEE-EcCcCcHHHHHHHHHHHHhhCCCCeEE--EEcCC---CCCHHHHHhhcCCcccEEEE
Confidence 0011345 56665 78777 3332322 46778888876544 3444 36633 23444433333222235566
Q ss_pred CCCCCccc-CCEEEcccC
Q 009138 525 SPFDPFEY-GDNVFVPGQ 541 (542)
Q Consensus 525 spf~pv~~-~g~~~~pgQ 541 (542)
.+|.|..+ .+....+|+
T Consensus 143 hf~~P~~~~~~vEv~~g~ 160 (291)
T PRK06035 143 HWFNPAPVMKLIEVVRAA 160 (291)
T ss_pred ecCCCcccCccEEEeCCC
Confidence 78877654 555555554
No 137
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.67 E-value=2.6 Score=44.34 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=75.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc--cCCCccCCchhchhhccccCCCCCHHHHHh
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi--~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~ 460 (542)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. .++-.-+|.+..-+|.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 244100001379999985432 122111244433233221111135567788
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 009138 461 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 515 (542)
Q Consensus 461 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wt 515 (542)
+ .|++|=+.+.+.. .| +++.+.+.+++ +.-||+-.|||- .+..--+++++
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 7 9999966555311 23 46777788889 499999999996 67776776665
No 138
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.49 E-value=0.58 Score=47.04 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=33.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999774 75 689999987
No 139
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.34 E-value=1.8 Score=45.63 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.||.|+|||..|.|||..++.+ |+ ++.++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999999764 64 57777763
No 140
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.26 E-value=1.6 Score=45.78 Aligned_cols=92 Identities=14% Similarity=0.293 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-.|++.=|+-.+.+++.++++|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4567788888889999999999999999 999999999999752 53 46666432 11
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
+|.|+++. +|++|-.-+.++.+++++++ +.-+|.=++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~lk------~GavVIDvG 230 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDWIK------PGATVIDVG 230 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchheec------CCCEEEEcC
Confidence 47888887 99999888888888887743 556666655
No 141
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.22 E-value=2.9 Score=44.09 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=76.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc--cCCCccCCchhchhhccccCCCCCHHHHHh
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi--~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~ 460 (542)
-||.|+|| |..|..+|-.|+. .|+-.-+-...|.|+|.+.-. .++..-+|.+..-++-....-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 48999998 9999999988764 254110011279999986311 111111243333223221111135667788
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhccc
Q 009138 461 AIKPTILIGTSGQG---RT-----------FTKEVVEAMASLNE-KPIIFSLSNPTSQSECTAEEAYTWS 515 (542)
Q Consensus 461 ~vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~e-rPIIFaLSNPt~~aEct~edA~~wt 515 (542)
+ .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||- .++.--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 7 89998665553 21 12467788888987 99999999996 77777777776
No 142
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.20 E-value=0.84 Score=44.75 Aligned_cols=110 Identities=17% Similarity=0.299 Sum_probs=68.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCC-----CCCHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELVDA 458 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ea 458 (542)
||+|+||||+-.. .++...+.+...++ ...|+|+|-+ ..|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998644 34544444434443 3589999986 23322122233334432 122 2589999
Q ss_pred HhccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 009138 459 VNAIKPTILIGTSGQG----------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 502 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~----------------------------g~Ft--------eevv~~Ma~~~erPIIFaLSNPt~ 502 (542)
+++ +|.+|=.-.+| |.|. .|+.+.|.+.|+..-||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 998 89887443333 2221 48899999999999999999998
Q ss_pred CCCCCH
Q 009138 503 QSECTA 508 (542)
Q Consensus 503 ~aEct~ 508 (542)
+++|-
T Consensus 148 -~~vt~ 152 (183)
T PF02056_consen 148 -GIVTE 152 (183)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 55553
No 143
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.14 E-value=2 Score=46.14 Aligned_cols=95 Identities=18% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhc--cCeEEEEccc-------ccccCCCc--cCCchhchhhcccc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET--RKKIWLVDSK-------GLIVSSRL--ESLQHFKKPWAHEH 449 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA--r~~i~lvDsk-------GLi~~~R~--~~l~~~k~~fA~~~ 449 (542)
-...||.|+|||+-|+++|..+... |...+.- .=.+|..|.+ -.|-..|. ..|+..+.| ..-
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n-----~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp--~ni 81 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGEN-----TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLP--DNI 81 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhc-----CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCC--Cce
Confidence 3457999999999999999999763 3110000 1257766642 01111111 112222211 011
Q ss_pred CCCCCHHHHHhccCCcEEE-EccCCCCCCCHHHHHHHHc
Q 009138 450 EPVKELVDAVNAIKPTILI-GTSGQGRTFTKEVVEAMAS 487 (542)
Q Consensus 450 ~~~~~L~eaV~~vkPtvLI-G~S~~~g~Fteevv~~Ma~ 487 (542)
....++.++++. .|++| .+.. .+-+++++.++.
T Consensus 82 ~~tsdl~eav~~--aDiIvlAVPs---q~l~~vl~~l~~ 115 (365)
T PTZ00345 82 VAVSDLKEAVED--ADLLIFVIPH---QFLESVLSQIKE 115 (365)
T ss_pred EEecCHHHHHhc--CCEEEEEcCh---HHHHHHHHHhcc
Confidence 112578888887 77554 4333 567888888875
No 144
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.02 E-value=5.2 Score=42.15 Aligned_cols=119 Identities=12% Similarity=0.155 Sum_probs=73.1
Q ss_pred CCCceeec-CC--cchHHHHHHHHHHHHHH-------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 009138 350 TTHLVFND-DI--QGTASVVLAGLISAMKF-------------------LGGSLADQRFLFLGAGEAGTGIAELIALEIS 407 (542)
Q Consensus 350 ~~~~~FND-Di--QGTaaVvLAgll~Alr~-------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~ 407 (542)
..+.+.|- +. +..|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+..
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~--- 167 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG--- 167 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh---
Confidence 45555553 22 24455567777766653 2346889999999999999999998854
Q ss_pred hhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEcc-CC---CCCCCHHHHH
Q 009138 408 KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS-GQ---GRTFTKEVVE 483 (542)
Q Consensus 408 ~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S-~~---~g~Fteevv~ 483 (542)
.|. +++.+|..- +. .. .+.+ ...+|.|+++. .|+++=.- .. -+.|.++++.
T Consensus 168 --~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 168 --FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred --CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 353 688888641 10 00 1111 12468888886 78766322 11 1466777777
Q ss_pred HHHcCCCCcEEEEcCC
Q 009138 484 AMASLNEKPIIFSLSN 499 (542)
Q Consensus 484 ~Ma~~~erPIIFaLSN 499 (542)
.|. +..++.-.|.
T Consensus 223 ~mk---~gavlIN~aR 235 (330)
T PRK12480 223 HVK---KGAILVNAAR 235 (330)
T ss_pred cCC---CCcEEEEcCC
Confidence 775 4566665554
No 145
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=87.93 E-value=2.3 Score=40.80 Aligned_cols=84 Identities=15% Similarity=0.316 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
---+|-.|++.-++..+-+|+..+++++|.+. .|.-+|.||.. .|. .+.+++++
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~------------- 69 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK------------- 69 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT-------------
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC-------------
Confidence 34568888899999999999999999999985 88888888855 242 34455543
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 483 (542)
.++|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 -----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 -----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp -----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred -----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357888886 99999999999999999996
No 146
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.82 E-value=7.9 Score=40.47 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=59.8
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHH
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 457 (542)
+..|.++++.|+|-|..|..+|+++. + .|+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 45799999999999999999998663 3 264 6888887521 0101 0 01236777
Q ss_pred HHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 458 AVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 458 aV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
+++. .|+++=.- ..-+.|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 7765 77776321 112577777888776 566777666533
No 147
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.59 E-value=1.9 Score=45.20 Aligned_cols=96 Identities=17% Similarity=0.314 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=++..+.+++.+++|++|.+. .|.-+|-||.+.+.+ .| ..+.++.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3456678888899999999999999999865 677888887643211 12 244555432
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
..+|.+.++. +|++|+.-+.++.|++++|+ +.-+|.-.+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDVg 235 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDVG 235 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEee
Confidence 1358999987 99999999999999999993 566775444
No 148
>PRK05442 malate dehydrogenase; Provisional
Probab=87.44 E-value=3.4 Score=43.65 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=74.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc--cCCCccCCchhchhhccccCCCCCHHHHHh
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi--~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~ 460 (542)
.||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. .++-.-+|.+...++-....-..+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC
Confidence 38999998 99999998877653 33100001379999985321 111111244433333222111135667788
Q ss_pred ccCCcEEEEccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 009138 461 AIKPTILIGTSGQ---GR-----------TFTKEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 515 (542)
Q Consensus 461 ~vkPtvLIG~S~~---~g-----------~Fteevv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wt 515 (542)
+ .|++|=+.+. +| ..=+++.+.+++++ ...||+-.|||. .++.--+++++
T Consensus 80 d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 80 D--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 7 8988855543 23 12346677778866 699999999996 77777777765
No 149
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.33 E-value=1.3 Score=45.45 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|++.+++..|.+. +.+++++|||-|+.+|+-.|.+ .|+ ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 35667777666653 4699999999999999887754 365 579999884
No 150
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.27 E-value=1.1 Score=45.26 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=58.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCC-CccCCch--hc-hhhccccCCCCCHHHHHh
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQH--FK-KPWAHEHEPVKELVDAVN 460 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~-R~~~l~~--~k-~~fA~~~~~~~~L~eaV~ 460 (542)
||.|+|+|..|..+|..|... | .+++++|+..-.... +...... .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998653 4 357777774211100 0000000 00 000000111247778887
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 009138 461 AIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 501 (542)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 501 (542)
. +|++| ++... ...+++++.+.+. .+..+|+.++|-.
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 5 78777 33333 4678888887754 3456888888744
No 151
>PRK08291 ectoine utilization protein EutC; Validated
Probab=87.23 E-value=2.3 Score=44.38 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc
Q 009138 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (542)
Q Consensus 369 gll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~ 448 (542)
|.+++..+.. -..++++|+|+|..|..++..+... .++ +++.++|+. .++ ...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455554432 2347999999999998888776543 233 578888763 222 22333333211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 009138 449 ----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (542)
Q Consensus 449 ----~~~~~~L~eaV~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 510 (542)
.....++.++++. +|++|-++.. .-.|+.++++. .-.|.++ |+--.+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123688999986 8999876533 24677777642 1223333 3322346888765
No 152
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.89 E-value=3.4 Score=41.87 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999998653 53 68888864
No 153
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.87 E-value=2.7 Score=43.96 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhc
Q 009138 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 442 (542)
Q Consensus 364 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k 442 (542)
-+|-.|++.=++-.+.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 456677888888899999999999999764 67778877754 242 46666653
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHHHh
Q 009138 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAEEAY 512 (542)
Q Consensus 443 ~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS-NPt~~aEct~edA~ 512 (542)
.++|.+.+++ +|++|-..+.++.++.|+|+ +.-+|+=-. |+.-.--+.+|++.
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik------~gavVIDvGin~~~~GDVd~~~v~ 246 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS------EGAVLLDAGYNPGNVGDIEISKAK 246 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC------CCCEEEEecCcccccCCcCHHHHh
Confidence 1357888887 99999999999999999997 444554333 33222345555554
No 154
>PRK07574 formate dehydrogenase; Provisional
Probab=86.72 E-value=4.1 Score=44.16 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=73.6
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHH
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 457 (542)
+..|.+++|.|+|.|..|..||+.+.. .|+ +++.+|+... .. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~-----fG~-------~V~~~dr~~~---~~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKP-----FDV-------KLHYTDRHRL---PE-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEECCCCC---ch-h-h---Hhhc--CceecCCHHH
Confidence 346889999999999999999999864 264 5788887532 00 0 0 0011 1112357999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEe
Q 009138 458 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 523 (542)
Q Consensus 458 aV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfAS 523 (542)
+++. .|+++=.-- .-+.|+++++..|. +..++.=.|.=.---|..--+|++ .|+.-.|.
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAa 307 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYA 307 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCCCchhhHHHHHHHHH--hCCccEEE
Confidence 9987 898874321 12689999999996 567888776633222333334443 46654443
No 155
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.71 E-value=1.1 Score=47.96 Aligned_cols=106 Identities=23% Similarity=0.409 Sum_probs=73.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc----cCCCCCHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELV 456 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~----~~~~~~L~ 456 (542)
..+-+++++|.|-+|+--|++.+ |+. .++.++|.+ .+| |......|... ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999998774 332 367777764 233 44444445533 12235799
Q ss_pred HHHhccCCcEEEEc-----cCCCCCCCHHHHHHHHcCCCCcEE----------EEcCCCCCCCCCCHHH
Q 009138 457 DAVNAIKPTILIGT-----SGQGRTFTKEVVEAMASLNEKPII----------FSLSNPTSQSECTAEE 510 (542)
Q Consensus 457 eaV~~vkPtvLIG~-----S~~~g~Fteevv~~Ma~~~erPII----------FaLSNPt~~aEct~ed 510 (542)
|++++ +|.+||. +..|.+.|+|+++.|.+ .-+| |-=|.||+..+-|.|+
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mkp---GsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKP---GSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCC---CcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99987 9999987 45566899999999973 3343 4556777777766653
No 156
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.51 E-value=3 Score=43.45 Aligned_cols=91 Identities=21% Similarity=0.352 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=++..+.+|+.++++++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4668888899999999999999999999764 68888888854 242 46667652
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
..+|.+.++. +|++|-..+.++.|++|+|+ +..+|+=-
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK------EGAIVIDV 229 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCcEEEEe
Confidence 1257888887 99999999999999999997 56677543
No 157
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=86.50 E-value=6.1 Score=41.35 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCceeec-C---CcchHHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhc
Q 009138 351 THLVFND-D---IQGTASVVLAGLISAMKFL----------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQT 410 (542)
Q Consensus 351 ~~~~FND-D---iQGTaaVvLAgll~Alr~~----------------g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~ 410 (542)
.++++|- + -+..|--+++-+|+..|-. +..+.++++.|+|.|..|..||+.+...
T Consensus 84 ~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af----- 158 (312)
T PRK15469 84 SVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW----- 158 (312)
T ss_pred CceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----
Confidence 4555543 1 1344556666666665432 3468899999999999999999999743
Q ss_pred CCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHH
Q 009138 411 NMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMA 486 (542)
Q Consensus 411 G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma 486 (542)
|+ +++.+|... .. .+... .+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|.
T Consensus 159 G~-------~V~~~~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk 217 (312)
T PRK15469 159 GF-------PLRCWSRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP 217 (312)
T ss_pred CC-------EEEEEeCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC
Confidence 65 577777631 11 11100 11 123467777776 777762211 11466667777775
Q ss_pred cCCCCcEEEEcCCCCCCCCCCHHHH
Q 009138 487 SLNEKPIIFSLSNPTSQSECTAEEA 511 (542)
Q Consensus 487 ~~~erPIIFaLSNPt~~aEct~edA 511 (542)
+..++.=.+. .++--|+|
T Consensus 218 ---~ga~lIN~aR----G~vVde~a 235 (312)
T PRK15469 218 ---DGAYLLNLAR----GVHVVEDD 235 (312)
T ss_pred ---CCcEEEECCC----ccccCHHH
Confidence 4456655443 44444443
No 158
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.43 E-value=7.5 Score=40.53 Aligned_cols=135 Identities=13% Similarity=0.201 Sum_probs=86.6
Q ss_pred CCCceeecC---CcchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHHH
Q 009138 350 TTHLVFNDD---IQGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 402 (542)
Q Consensus 350 ~~~~~FNDD---iQGTaaVvLAgll~Alr~~------------------------g~~L~d~riv~~GAGsAg~GIA~ll 402 (542)
..|.+.|-- -..+|=-+++-+|+..|-. +..|.++++.|+|-|..|..+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 456666642 1345666777777776632 2468999999999999999999998
Q ss_pred HHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCC
Q 009138 403 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFT 478 (542)
Q Consensus 403 ~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Ft 478 (542)
. ++ |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=. ...-+.|+
T Consensus 165 ~-~f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 Q-AF----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred h-hc----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 5 32 64 6888888531 10 0 011 12478998887 8888632 12236899
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEE
Q 009138 479 KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAI 520 (542)
Q Consensus 479 eevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~w--t~GraI 520 (542)
++.++.|. +..++.=.|. .++-=|+|+-. ..|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 99999996 6677776655 44444433311 356644
No 159
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=86.06 E-value=1.2 Score=46.11 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=78.4
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEE
Q 009138 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTIL 467 (542)
Q Consensus 388 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvL 467 (542)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.+...-..+-.+.+++ .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 25799999842222221112333322221111001233567777 8999
Q ss_pred EEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEeCCCC
Q 009138 468 IGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSPF 527 (542)
Q Consensus 468 IG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~G--raIfASGspf 527 (542)
|=+.+.+.. +=+++++.+++++..-+|+-.|||. ++...-++++++= +-||.+|.-.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt~L 141 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGTVL 141 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccchH
Confidence 976665421 1246788888899999999999997 6777777776521 3478887543
No 160
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.90 E-value=6.8 Score=43.79 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=86.0
Q ss_pred CCCceeecCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHh
Q 009138 350 TTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 408 (542)
Q Consensus 350 ~~~~~FNDDi---QGTaaVvLAgll~Alr~------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~ 408 (542)
..++|.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+..
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~---- 161 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKA---- 161 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHh----
Confidence 4566666421 23555677777777654 2456889999999999999999999864
Q ss_pred hcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHH
Q 009138 409 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEA 484 (542)
Q Consensus 409 ~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~ 484 (542)
.|+ +++.+|+.. .+ +.... + .-...+|.|+++. .|+++=.-. .-+.|+++.+..
T Consensus 162 -fG~-------~V~~~d~~~----~~-~~~~~----~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 162 -FGM-------KVIAYDPYI----SP-ERAAQ----L---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred -CCC-------EEEEECCCC----Ch-hHHHh----c---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 264 688888742 11 10000 0 0011268888876 787763321 126788888888
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEE
Q 009138 485 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAI 520 (542)
Q Consensus 485 Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraI 520 (542)
|. +..++.=.|.-.---|..--+|++ .|+.-
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~ 250 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVA 250 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCee
Confidence 86 567777776644333333344443 46543
No 161
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=85.61 E-value=3.3 Score=43.60 Aligned_cols=92 Identities=13% Similarity=0.224 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-+|++.=++-.|.+|+.+++|++|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~A-------TVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 334667788888899999999999999999764 57777777744 242 46777653
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
.++|.+.++. +|++|-..+.++.|+.|+|+ +..+|+=
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk------~gavVID 237 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK------PGAAVID 237 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEE
Confidence 1358888887 99999999999999999997 4556643
No 162
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.55 E-value=3.4 Score=43.32 Aligned_cols=94 Identities=17% Similarity=0.319 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-+|++.=++..+.+++..++|++|.+. .|.-+|.||.. .|. .+.+|+|+.
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~T----------- 193 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSKT----------- 193 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCCC-----------
Confidence 446778888999999999999999999999764 67788887754 243 355666531
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.+|.+.++. +|++|-..+.++.+++++|+ +..||.=-.
T Consensus 194 -------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk------~GavVIDvG 231 (288)
T PRK14171 194 -------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN------PESIVIDVG 231 (288)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC------CCCEEEEee
Confidence 358888887 99999999999999999997 455665433
No 163
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.29 E-value=3.7 Score=43.14 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-.|++.-++..|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+-
T Consensus 139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVt~chs~T------------ 194 (294)
T PRK14187 139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----ENC-------TVTTVHSAT------------ 194 (294)
T ss_pred ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CCC-------EEEEeCCCC------------
Confidence 34667888899999999999999999999764 57777777753 242 466666531
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
++|.+.++. +|++|-..+.++.++.|+|+ +.-||+=-
T Consensus 195 ------------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gaiVIDV 231 (294)
T PRK14187 195 ------------RDLADYCSK--ADILVAAVGIPNFVKYSWIK------KGAIVIDV 231 (294)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 357888887 99999999999999999997 55666543
No 164
>PLN03139 formate dehydrogenase; Provisional
Probab=85.27 E-value=7.7 Score=42.11 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=73.2
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHH
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 457 (542)
+..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+... ..+ ..+. + ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~a-----fG~-------~V~~~d~~~~----~~~---~~~~-~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKP-----FNC-------NLLYHDRLKM----DPE---LEKE-T--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHH-----CCC-------EEEEECCCCc----chh---hHhh-c--CceecCCHHH
Confidence 456899999999999999999999964 264 5777887532 001 0110 0 0112347999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEEeCC
Q 009138 458 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGS 525 (542)
Q Consensus 458 aV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~-~w-t~GraIfASGs 525 (542)
+++. .|+++=..- .-+.|+++.+..|. +.-+++=.|. .++--|+|+ ++ ..|+.-.|..-
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLD 316 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGD 316 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEc
Confidence 9987 888873321 12689999999996 5667776665 344433332 22 25665555444
No 165
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.25 E-value=4.3 Score=42.17 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=65.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc---cCCCCCHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVD 457 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~---~~~~~~L~e 457 (542)
....+++|+|+|..|..+++.+... .++ ++|+++|+. .++ ...+...+.+. .....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHH
Confidence 3568999999999999999877553 232 678888763 222 22333333221 112368899
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 009138 458 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 510 (542)
+++. .|++|-++... .+|+.++++ +.-.|-+. |.+..+-|+.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 9986 99998766543 246666653 22244444 5566678999864
No 166
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.15 E-value=2.7 Score=43.42 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=64.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhc-cc--cC-CCCC
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA-HE--HE-PVKE 454 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA-~~--~~-~~~~ 454 (542)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-..+ ++. | .++ .+ .. ...-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~sN----lnR-Q-~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVTN----TNR-Q-IHALRDNVGLAKAEV 88 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEecccc----ccc-c-cccChhhcChHHHHH
Confidence 468899999999999999999999875 76 689999987443332 432 1 112 11 01 1124
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 009138 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 503 (542)
Q Consensus 455 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~ 503 (542)
+.+-+..+.|++-|-.- ...+++|-+...-...-.=||-+.-|+..+
T Consensus 89 ~~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 89 MAERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 66667777777765432 224555554444321223456666666543
No 167
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.10 E-value=15 Score=37.75 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 371 l~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
+.|++..+. ..+++++|.|+|+.|...+.++.. .|. ++++.+|+
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 445554433 368899999999888776654432 363 46777775
No 168
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.99 E-value=2.3 Score=42.76 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=56.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCC-CccCCch---hchhhccccCCCCCHHHHHh
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQH---FKKPWAHEHEPVKELVDAVN 460 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~-R~~~l~~---~k~~fA~~~~~~~~L~eaV~ 460 (542)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+.- ...... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999998653 4 35778877 210000 0000100 000000 0011245666655
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009138 461 AIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (542)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 502 (542)
. +|++|=+.- . ...+++++.++.+ .++.+|+.+.|.-.
T Consensus 68 ~--~d~vilavk-~-~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 P--FDLVILAVK-A-YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred C--CCEEEEEec-c-cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 4 776653322 2 3578999988763 35567888999863
No 169
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.91 E-value=3.7 Score=42.98 Aligned_cols=93 Identities=16% Similarity=0.333 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-.|++.-++..|-+|+.+++|++|.+ ..|.-+|.||... ..|. .+.+|.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC--------------
Confidence 467788889999999999999999999976 4677788877431 0132 35566552
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
..+|.+.+++ +|++|-..+.++.++.|+|+ +.-+|+=-
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik------~GavVIDv 231 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK------PGAAVLDV 231 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC------CCCEEEEc
Confidence 1368899997 99999999999999999997 45566543
No 170
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.88 E-value=7.2 Score=43.62 Aligned_cols=143 Identities=21% Similarity=0.194 Sum_probs=85.3
Q ss_pred CCCceeecC---CcchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHh
Q 009138 350 TTHLVFNDD---IQGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 408 (542)
Q Consensus 350 ~~~~~FNDD---iQGTaaVvLAgll~Alr~------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~ 408 (542)
..++|.|-- -+.+|=-++|.+|+..|- .|..|.++++.|+|.|..|..+|+.+..
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~---- 159 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA---- 159 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh----
Confidence 456666642 134555567777766552 2557899999999999999999999854
Q ss_pred hcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHH
Q 009138 409 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEA 484 (542)
Q Consensus 409 ~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~ 484 (542)
.|+ +++.+|... .... . ..+ ......+|.|+++. .|+++=.- ..-+.|+++.++.
T Consensus 160 -fG~-------~V~~~d~~~--~~~~---~----~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 160 -FGM-------KVLAYDPYI--SPER---A----EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred -CCC-------EEEEECCCC--ChhH---H----Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 264 688888641 1110 0 000 00112468888876 78776221 2235788888888
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEE
Q 009138 485 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 522 (542)
Q Consensus 485 Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfA 522 (542)
|. +..++.=.|.-.---|..--+|++ .|+.-.|
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gA 251 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAA 251 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEE
Confidence 86 566777666644333333334443 4654433
No 171
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.82 E-value=2.9 Score=41.84 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=55.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCC-CccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~-R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
||.|+|||+.|..+|..+.+. | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999988653 4 368888874211000 0000100000000000112345554 4 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 009138 464 PTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLSNPT 501 (542)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLSNPt 501 (542)
+|++| ++... .-++++++.++..- ++-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78777 44433 34689999988643 334666788875
No 172
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.74 E-value=3.9 Score=42.71 Aligned_cols=94 Identities=17% Similarity=0.263 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-+|++.=++-.|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+++ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 445678888999999999999999999999764 67778877753 242 35556553 1
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
++|.+.++. +|++|-..+.++.|++++|+ +..||+=-.
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDvG 229 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVG 229 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEec
Confidence 358888887 99999999999999999997 566775444
No 173
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.69 E-value=0.88 Score=44.34 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=34.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 468899999999999999999999875 76 6899999873
No 174
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.59 E-value=0.75 Score=50.67 Aligned_cols=124 Identities=16% Similarity=0.354 Sum_probs=80.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCC-----CCCH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKEL 455 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L 455 (542)
+..||+|+||||.. .++++...+.+...++. ..|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999986 56777777766666653 689999974 44432111122223322 122 2589
Q ss_pred HHHHhccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 009138 456 VDAVNAIKPTILIGT--------------------------SGQGRTFT--------KEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 456 ~eaV~~vkPtvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt 501 (542)
.||+++ +|-+|=. -++||.|. -|+++.|-+.|+..-++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 6766522 23333332 38899999999999999999998
Q ss_pred CCCCCCHHHHhcccCC-cEE
Q 009138 502 SQSECTAEEAYTWSQG-RAI 520 (542)
Q Consensus 502 ~~aEct~edA~~wt~G-raI 520 (542)
+++|- -+++|+.. +.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 67764 44565654 444
No 175
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=84.58 E-value=5.1 Score=41.66 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=76.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc----cc--CCC---C
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----EH--EPV---K 453 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~----~~--~~~---~ 453 (542)
.||.|+|| |..|..+|..++. .|+ ...++++|.+--+ +.+...+.++.+ .. ..+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECC
Confidence 37999998 9999999998865 354 2479999985211 112222222111 00 111 2
Q ss_pred CHHHHHhccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--C
Q 009138 454 ELVDAVNAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--G 517 (542)
Q Consensus 454 ~L~eaV~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--G 517 (542)
+ .+.+++ .|++|=+.+.+ | .+-+++++.|++++...+|+--+||. .+..-.+++++. .
T Consensus 66 d-~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~ 139 (309)
T cd05294 66 D-LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDK 139 (309)
T ss_pred C-HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCH
Confidence 4 455776 89888665543 1 24567888888899999999999996 555555655431 2
Q ss_pred cEEEEeCC
Q 009138 518 RAIFASGS 525 (542)
Q Consensus 518 raIfASGs 525 (542)
+-+|++|.
T Consensus 140 ~~viG~gt 147 (309)
T cd05294 140 NRVFGLGT 147 (309)
T ss_pred HHEeeccc
Confidence 34777775
No 176
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.58 E-value=0.57 Score=52.18 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCe
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~ 420 (542)
+..+|+|+|||.||+..|++|.+... .+..-|||.|
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 44589999999999999999988632 2566778775
No 177
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=84.43 E-value=5.2 Score=41.47 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeAr~~i~lvDsk 427 (542)
.||.|+|+|..|-+|+.-|... | ++ ..+|+++|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 5899999999999998888664 4 32 3678877763
No 178
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=84.34 E-value=9.4 Score=40.20 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCceeecCC---cchHHHHHHHHHHHHHH---------------------hCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 009138 350 TTHLVFNDDI---QGTASVVLAGLISAMKF---------------------LGGSLADQRFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 350 ~~~~~FNDDi---QGTaaVvLAgll~Alr~---------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~ 405 (542)
..++|.|--- ..+|=-+++.+|+..|- .|..|.++++.|+|.|..|..||+.+..+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 3555555321 23555567777766653 24568999999999999999999987523
Q ss_pred HHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHH
Q 009138 406 ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEV 481 (542)
Q Consensus 406 ~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~Fteev 481 (542)
+ |+ ++...|+.. . .+ ....+ .....+|.|+++. .|+++=.- ..-|.|+++.
T Consensus 168 f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 168 F----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred C----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHH
Confidence 2 54 455556421 0 00 00011 1113478898887 88876321 1226899999
Q ss_pred HHHHHcCCCCcEEEEcCC
Q 009138 482 VEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 482 v~~Ma~~~erPIIFaLSN 499 (542)
++.|. +..++.=.|.
T Consensus 223 l~~mk---~ga~lIN~aR 237 (323)
T PRK15409 223 FAKMK---SSAIFINAGR 237 (323)
T ss_pred HhcCC---CCeEEEECCC
Confidence 99996 5667765554
No 179
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.14 E-value=4.4 Score=42.46 Aligned_cols=93 Identities=20% Similarity=0.388 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-+|++.=++-.|-+|+.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 45677888888899999999999999999764 67777777753 242 45666542
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
..+|.+.++. +|++|-..+.++.|++|+|+ +.-||+=-.
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk------~GavVIDvG 229 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK------PGAIVIDVG 229 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEcc
Confidence 1357888887 99999999999999999997 455665443
No 180
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=83.83 E-value=1.6 Score=48.08 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=63.3
Q ss_pred eeeecCCCccHHHHHHHHcC-CCc--eeecCCcchHHHHHHHHHHHHHHhC--------CCCCCceEEEeCcchHHHHHH
Q 009138 331 IQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFLG--------GSLADQRFLFLGAGEAGTGIA 399 (542)
Q Consensus 331 IqfEDf~~~nAf~lL~ryr~-~~~--~FNDDiQGTaaVvLAgll~Alr~~g--------~~L~d~riv~~GAGsAg~GIA 399 (542)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.+++... ....+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777778889999974 444 4577778888888889998887532 123456899999999999999
Q ss_pred HHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 400 ELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 400 ~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 98865 364 56666654
No 181
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=83.51 E-value=2.4 Score=43.82 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=77.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc-ccccCCCccCCchhchhhcccc-CCCCCHHHHHhccC
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 463 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk-GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~eaV~~vk 463 (542)
|.|+|||..|..+|-.++. .|+ -..+.++|.+ .++.... .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 4789999999999976654 365 2579999973 2211111 12444433321110 01234 457776
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEeCCC
Q 009138 464 PTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (542)
Q Consensus 464 PtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt--~GraIfASGsp 526 (542)
.|++|=+.+.+ |- +=+++++.+.++++.-+|+-.|||. ++..+-+.+++ +-+-+|++|.-
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt~ 142 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGTL 142 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCCc
Confidence 88888555543 21 1246778888899999999999996 77777777763 22447777654
No 182
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.32 E-value=1.7 Score=47.77 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=55.8
Q ss_pred eeeecCCCccHHHHHHHHcC-CCc--eeecCCcchHHHHHHHHHHHHHHh--------CCCCCCceEEEeCcchHHHHHH
Q 009138 331 IQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFL--------GGSLADQRFLFLGAGEAGTGIA 399 (542)
Q Consensus 331 IqfEDf~~~nAf~lL~ryr~-~~~--~FNDDiQGTaaVvLAgll~Alr~~--------g~~L~d~riv~~GAGsAg~GIA 399 (542)
|..|=+....-.++.++|.- ..| ++||+..+.+....+-+++.++.. ...-.+.++||+|||+||+..|
T Consensus 149 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA 228 (515)
T TIGR03140 149 ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAA 228 (515)
T ss_pred ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHH
Confidence 55555777788889999974 444 458887888888888888877654 1224457899999999999999
Q ss_pred HHHHH
Q 009138 400 ELIAL 404 (542)
Q Consensus 400 ~ll~~ 404 (542)
..+..
T Consensus 229 ~~la~ 233 (515)
T TIGR03140 229 IYAAR 233 (515)
T ss_pred HHHHH
Confidence 88765
No 183
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.32 E-value=5.8 Score=40.63 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=57.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCCCCCHHHHHhcc-
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI- 462 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~~~~L~eaV~~v- 462 (542)
||.|+|.|..|..+|+.|... |. +++++|+.. .+ .+ .++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----EA---VE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999653 52 577777741 11 11 12211 12235788888765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 501 (542)
+||++|=+- ......+++++.+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 377665332 233466777665543 34678888888643
No 184
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.31 E-value=1 Score=43.97 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=34.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 568899999999999999999999775 76 7899999873
No 185
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.13 E-value=12 Score=37.42 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
+..+.|++..+. ..+.+++|+|+|..|...+.+. ++ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 334556665544 3788999999998776655544 22 364 46887764
No 186
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.05 E-value=5.4 Score=41.96 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=|+-.+.+|+.+++|++|.+. .|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 4567788888899999999999999999765 57777777743 23210 0124444443
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
.++|.+.+++ +|++|-..+.++.+++|+|+ +..+|+=
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~gavVID 231 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK------EGAVVID 231 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 1368888887 99999999999999999997 5556643
No 187
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.02 E-value=2.4 Score=46.75 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.. .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 4678888888889999999999999888888777754 352 5777775
No 188
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.93 E-value=5.1 Score=42.21 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-+|++.=|+-.|.+++.++++++|.+. .|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 345667788888899999999999999999764 57777777743 2211 01245555443
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.++|.+.+++ +|++|-..+.++.+++|+|+ +..+|+=-.
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDvG 237 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDVG 237 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEecC
Confidence 1358888987 99999999999999999997 566776554
No 189
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.89 E-value=2.9 Score=42.20 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|++.+++..+...+..+++|+|+|.+|.+++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3455666554555667899999999888888877754 24 268888863
No 190
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=82.82 E-value=1.9 Score=39.90 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
+|||+|+|.||+..|..+.. .| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 68999999999999999973 24 4788886543
No 191
>PRK07680 late competence protein ComER; Validated
Probab=82.80 E-value=3 Score=41.96 Aligned_cols=98 Identities=13% Similarity=0.254 Sum_probs=56.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 464 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkP 464 (542)
+|.|+|+|..|..+|..+... |.- ...+++++|++ .. ........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999988653 420 12467777763 11 1111111110 00112466777765 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009138 465 TILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (542)
Q Consensus 465 tvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 502 (542)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7765 33333 3467777777643 34568888888763
No 192
>PRK06932 glycerate dehydrogenase; Provisional
Probab=82.74 E-value=12 Score=39.23 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHH
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 458 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~ea 458 (542)
..|.++++.|+|-|..|-.+|+++.. .|+ +++.+|+..- +.. . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-----fg~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-----LGM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-----CCC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 46889999999999999999998843 265 4666665310 000 0 113479999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEE
Q 009138 459 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 522 (542)
Q Consensus 459 V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfA 522 (542)
++. .|+++=. ...-|.|+++.++.|. +..++.=.|.-.---|..-.+|++ +|+.-.|
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gA 255 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGRGPLVDEQALLDALE--NGKIAGA 255 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--cCCccEE
Confidence 987 8988832 2234799999999996 677777666533222323334443 4654333
No 193
>PLN02527 aspartate carbamoyltransferase
Probab=82.72 E-value=38 Score=35.60 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=76.4
Q ss_pred HhcCCCceeeeecCCCccHHHHHHHHcCCCceee--cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 009138 323 QNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (542)
Q Consensus 323 ~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ 400 (542)
.+| .++ |-.-.+...... -+.+| .++||.| |+...=-+=+||=++.-.+..| ++++.||+++|.+.=+ -+++
T Consensus 94 s~y-~D~-iviR~~~~~~~~-~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~~ 167 (306)
T PLN02527 94 EGY-SDI-IVLRHFESGAAR-RAAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTVR 167 (306)
T ss_pred HHh-CcE-EEEECCChhHHH-HHHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhHH
Confidence 455 333 334445444433 33454 4789999 4343334456777777666666 5999999999987422 2455
Q ss_pred HHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc-C---CCCCHHHHHhccCCcEEEEccCC
Q 009138 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E---PVKELVDAVNAIKPTILIGTSGQ 473 (542)
Q Consensus 401 ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~-~---~~~~L~eaV~~vkPtvLIG~S~~ 473 (542)
-++.++.+..|+ +|.++-.+|+- +++....++++. . ...++.||+++ +||+.-.+.+
T Consensus 168 Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 168 SLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred HHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcc
Confidence 555544432254 57777777761 222222333321 1 12689999998 9999997754
No 194
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.49 E-value=2.8 Score=43.04 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.||.|+|||..|.|||..++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 4899999999999999988764 64 57777753
No 195
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=82.38 E-value=0.72 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHH
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
+...+.||||+|||.||++.|.-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 196
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.19 E-value=19 Score=39.14 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=83.4
Q ss_pred HHHHHHcCCCceeecCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHH
Q 009138 343 DLLEKYGTTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAEL 401 (542)
Q Consensus 343 ~lL~ryr~~~~~FNDDi---QGTaaVvLAgll~Alr~------------------~g~~L~d~riv~~GAGsAg~GIA~l 401 (542)
++..--+..++|+|--- ..+|=-+++.+|++.|- .|..|.+.++.|+|.|..|..+|+.
T Consensus 90 d~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~ 169 (409)
T PRK11790 90 DLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVL 169 (409)
T ss_pred cHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHH
Confidence 33333346899999532 33555678888887763 2456899999999999999999998
Q ss_pred HHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCC
Q 009138 402 IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTF 477 (542)
Q Consensus 402 l~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~F 477 (542)
+.. .|+ +++.+|... + .... .+ ....+|.|+++. .|+++=.- ..-+.|
T Consensus 170 ~~~-----fGm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li 221 (409)
T PRK11790 170 AES-----LGM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMI 221 (409)
T ss_pred HHH-----CCC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhcc
Confidence 854 265 688888631 1 0010 01 123478888887 78776321 112588
Q ss_pred CHHHHHHHHcCCCCcEEEEcCCC
Q 009138 478 TKEVVEAMASLNEKPIIFSLSNP 500 (542)
Q Consensus 478 teevv~~Ma~~~erPIIFaLSNP 500 (542)
+++.++.|. +..++.-.|.-
T Consensus 222 ~~~~l~~mk---~ga~lIN~aRG 241 (409)
T PRK11790 222 GAEELALMK---PGAILINASRG 241 (409)
T ss_pred CHHHHhcCC---CCeEEEECCCC
Confidence 889888886 56677766653
No 197
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.03 E-value=1.9 Score=38.98 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
||+++|+|..|..+|+.|+.. |+ ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999774 65 6899999873
No 198
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=81.98 E-value=7 Score=42.38 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-
Q 009138 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH- 447 (542)
Q Consensus 369 gll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~- 447 (542)
-+..++.-....|...|++|+|.+.-.+++++.|.+. .|+.. ..+-+. ..++ +...+.-+.+..
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3455566666778889999999998999999998764 37632 212111 0111 111111111111
Q ss_pred ----ccCCCCCHHHHHhccCCcEEEEcc
Q 009138 448 ----EHEPVKELVDAVNAIKPTILIGTS 471 (542)
Q Consensus 448 ----~~~~~~~L~eaV~~vkPtvLIG~S 471 (542)
+..+...+++.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112234568899999999999987
No 199
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.68 E-value=7.7 Score=39.22 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.6
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
..||.|+|+|..|.+||+.++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~ 24 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLH 24 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHH
Confidence 4689999999999999998865
No 200
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.02 E-value=3.7 Score=42.22 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999999663 4 356677764
No 201
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=80.84 E-value=6.5 Score=43.53 Aligned_cols=138 Identities=12% Similarity=0.008 Sum_probs=82.8
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 009138 383 DQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (542)
Q Consensus 383 d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~ 461 (542)
=.||.|+|| |..|..+|-.|+..-+ .|.... --.++.++|.+-=..++-.-+|.+-.-++-++..-..+-.+.+++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v--~g~~~~-i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd 176 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEV--FGPDQP-IALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD 176 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc--ccCCCC-cccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc
Confidence 379999999 9999999998865300 111111 124788898742222221112333332332211101233566777
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHc-CCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEeC
Q 009138 462 IKPTILIGTSGQGRT--------------FTKEVVEAMAS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASG 524 (542)
Q Consensus 462 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~-~~erPIIFaLSNPt~~aEct~edA~~wt~--GraIfASG 524 (542)
.|++|=+.+.+.. +=+++.+.+.+ .+..-||+-.|||- ....--+++++. -.-+|.||
T Consensus 177 --aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGtg 251 (444)
T PLN00112 177 --AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHAL 251 (444)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEee
Confidence 8999866665421 12467788888 58999999999995 777777777762 24577777
Q ss_pred CCCC
Q 009138 525 SPFD 528 (542)
Q Consensus 525 spf~ 528 (542)
.-.+
T Consensus 252 T~LD 255 (444)
T PLN00112 252 TRLD 255 (444)
T ss_pred ccHH
Confidence 6443
No 202
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.50 E-value=2.7 Score=44.01 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=54.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc--ccCCC--ccCCchhchhhccccCCCCCHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSR--LESLQHFKKPWAHEHEPVKELVDA 458 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL--i~~~R--~~~l~~~k~~fA~~~~~~~~L~ea 458 (542)
..||.|+|||+-|..+|..+... | . -.+|..|..-. |.+.+ .+.+.. ...+.....-..++.++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-CcccCCCeEEECCHHHH
Confidence 37899999999999999988653 3 1 23554433211 00110 001110 00000000112467777
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 009138 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 501 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 501 (542)
++. +|++| ++... .+.+++++.++.+ .++.+|..++|--
T Consensus 75 ~~~--aDlVi-lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 ANC--ADVVV-MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred Hhc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 775 66554 33322 4788888888753 3344566778754
No 203
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=80.07 E-value=9.3 Score=46.53 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCC---------CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhcc------------Ce---EEE
Q 009138 368 AGLISAMKFLGGS---------LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR------------KK---IWL 423 (542)
Q Consensus 368 Agll~Alr~~g~~---------L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr------------~~---i~l 423 (542)
+.+.+|++..|.. +.--+|||.|+|-+|.|.++++...-.+ =++.++-+ ++ +|.
T Consensus 179 ~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~ 256 (1042)
T PLN02819 179 AAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYG 256 (1042)
T ss_pred HHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeee
Confidence 3445666555432 3357999999999999999988653111 01222210 01 221
Q ss_pred --Eccccccc-CCCccCCchhchhhccccCCC-CCHH-HHHhccCCcEEEEcc----CCCCCCCHH-HHHHHHc
Q 009138 424 --VDSKGLIV-SSRLESLQHFKKPWAHEHEPV-KELV-DAVNAIKPTILIGTS----GQGRTFTKE-VVEAMAS 487 (542)
Q Consensus 424 --vDskGLi~-~~R~~~l~~~k~~fA~~~~~~-~~L~-eaV~~vkPtvLIG~S----~~~g~Ftee-vv~~Ma~ 487 (542)
+.+.-.+. ++. +.-=+.+..|+++ +.. ..+. +++.. .|+|||.= ..|.++|+| +++.|.+
T Consensus 257 ~~~~~~~~~~~~~~-~~~f~~~~y~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 257 CVVTSQDMVEHKDP-SKQFDKADYYAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eecChHHHhhccCC-ccccchhhhccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 11111111 110 0000112233333 333 3454 68877 99999984 345689999 8888874
No 204
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=80.06 E-value=0.86 Score=54.82 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCCceeeeecCCCccHHH------------HHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCC
Q 009138 314 LHEFMTAVKQNYGERILIQFEDFANHNAFD------------LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSL 381 (542)
Q Consensus 314 idefv~av~~~fGp~~lIqfEDf~~~nAf~------------lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L 381 (542)
-.|.++++..+|-| +=||.-|..-.+.. .-+||...+.+|..+ .-.+|
T Consensus 358 aQEViKaisgKf~P--i~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~------------------~Q~kL 417 (1008)
T TIGR01408 358 SQEVLKAVTGKFSP--LCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDT------------------FQQKL 417 (1008)
T ss_pred HHHHHHHhcCCCCC--ceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHH------------------HHHHH
Confidence 58899999999977 22554444322221 233444333333311 12468
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++.||+++|||..|+-+++.|+.. |+.-. ...+|.++|-+
T Consensus 418 ~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 418 QNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred hhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 889999999999999999999875 55211 13689999987
No 205
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=79.99 E-value=1.7 Score=50.07 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||..-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 567899999999999999999999875 76 78999998644
No 206
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.79 E-value=9.4 Score=39.16 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=56.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCCCCCHHHHHhccC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIK 463 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~~~~L~eaV~~vk 463 (542)
+|-|+|.|..|..+|+.+... |. ++++.|++. ++ .+. ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999998652 53 577777631 11 111 1111 122357888887643
Q ss_pred -CcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 009138 464 -PTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (542)
Q Consensus 464 -PtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 501 (542)
+|++|= +.......+++++.+.. ..+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566653 33233466777766654 34567888887643
No 207
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.67 E-value=7.8 Score=40.54 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-.|++.=++-.|.+|++.++|++|.+. .|.-+|.||.. .|. .+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 345678888999999999999999999999764 67778887753 242 45566543
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
.++|.+.++. +|++|-..+.++.|++++|+ +.-+|.=
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk------~gavVID 228 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK------EGAVVID 228 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC------CCcEEEE
Confidence 1257777776 99999999999999999997 4556643
No 208
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.55 E-value=15 Score=37.37 Aligned_cols=32 Identities=41% Similarity=0.787 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998763 5 368888864
No 209
>PRK07340 ornithine cyclodeaminase; Validated
Probab=79.40 E-value=15 Score=38.09 Aligned_cols=105 Identities=10% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCC--CCCHHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELVDA 458 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~--~~~L~ea 458 (542)
....+++|+|+|..|...++.+... .++ ++|+++|+. .++ ...+...+.+...+ ..+++|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999999888888653 243 578888874 222 22222233211111 3578999
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 009138 459 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 511 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~edA 511 (542)
++. .|++|-++... .+|.. .+ .+.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~------~~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AA------RAGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cC------CCCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999876443 35654 23 2455677765422 4689987743
No 210
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.36 E-value=8.6 Score=41.10 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=30.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+++.+++|+|+|.+|.++|+.++.. | .+++++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 46788999999999999999998763 6 368999886
No 211
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.36 E-value=8.8 Score=40.22 Aligned_cols=90 Identities=17% Similarity=0.285 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=++-.+.+++.+++|++|-+. .|.-+|.||.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567788888899999999999999999765 57777777743 232 45555442
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
..+|.+.++. +|++|-..+.++.+++|+|+ +..+|+=
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik------~gaiVID 227 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK------EGAVVID 227 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEE
Confidence 1357788887 99999999999999999997 4556643
No 212
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.26 E-value=2.3 Score=45.22 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=65.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCC-c-------cCCchhchhhccc--
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-L-------ESLQHFKKPWAHE-- 448 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R-~-------~~l~~~k~~fA~~-- 448 (542)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDTV-DLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEE-cccccccCcccChhHCCChHHHHHHHHH
Confidence 467889999999999999999999764 76 68999998732 2211 0 0111122221110
Q ss_pred ---cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 449 ---HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 449 ---~~---------~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.+ .. .++.+.++. .|++|-++. ..=+..++..++.....|.|++-+
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d--~~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSD--NFDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEEE
Confidence 01 11 134566665 788887664 234556777777777899998754
No 213
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.04 E-value=5.4 Score=38.00 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++++.+++|.|| |..|..+++.+++ .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467789999997 5566666666543 353 58888875
No 214
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.04 E-value=8.9 Score=40.41 Aligned_cols=96 Identities=11% Similarity=0.236 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-.|++.=++..+.+|+.++++++|.+. .|.-+|.||... +.. ....+.+|.++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 3567888888899999999999999999765 577788777431 110 00134445442
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
..+|.+.+++ +|++|-..|.++.++.|+|+ +.-||+=-.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDvG 233 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDVG 233 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEcc
Confidence 1358888887 99999999999999999997 566776544
No 215
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.90 E-value=9.3 Score=40.02 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch
Q 009138 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (542)
Q Consensus 362 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~ 440 (542)
-.-+|-.|++.=++-.|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------------
Confidence 45677888888899999999999999999764 67778887754 242 35555442
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 441 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
..+|.+.++. +|++|-..+.++.|+.|+|+ +..||+=
T Consensus 190 -----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk------~GavVID 226 (282)
T PRK14169 190 -----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK------PGAVVID 226 (282)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCcEEEE
Confidence 1258888887 99999999999999999997 4556643
No 216
>PRK06153 hypothetical protein; Provisional
Probab=78.68 E-value=3.8 Score=44.71 Aligned_cols=100 Identities=32% Similarity=0.464 Sum_probs=58.2
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceE
Q 009138 307 GQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 386 (542)
Q Consensus 307 G~ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~ri 386 (542)
+..|..+.++++.-+.---||-.+|..+ .++.-|+.... +++=.+||== =|++.= +| +.+ .-.+|++.||
T Consensus 110 ~~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~-~~~~svf~y~--dt~s~R-~~-i~~---~q~kL~~~~V 179 (393)
T PRK06153 110 GGGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIED-AEEDSVFNYP--DTASSR-AG-IGA---LSAKLEGQRI 179 (393)
T ss_pred CCCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCC-cccCCceehh--hhhccc-cC-hHH---HHHHHhhCcE
Confidence 3467777777777766666664444322 22333432111 1112233310 011100 01 111 1257889999
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 387 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+|+|+|..|.-|+++|+.. |+ ++|.++|-+
T Consensus 180 aIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 180 AIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred EEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 9999999999999999875 75 689999987
No 217
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.57 E-value=10 Score=39.85 Aligned_cols=98 Identities=20% Similarity=0.361 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc
Q 009138 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~ 439 (542)
+-.-+|-.|++.=|+-.|.+|+.+++|++|-+. .|.-+|.||.. .|... ...+.+|.++
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 344667888888899999999999999999764 57778777754 22211 1234444432
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 440 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.++|.+.++. +|++|-..+.++.+++|+|+ +.-||+=-.
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik------~GavVIDvG 229 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA------EKAVIVDVG 229 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEec
Confidence 1358888887 99999999999999999997 566775443
No 218
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.40 E-value=51 Score=34.01 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=24.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
..++++|+|||..|+..+.++... .|. .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 478999999998887766666432 131 36777775
No 219
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.35 E-value=9.2 Score=40.14 Aligned_cols=91 Identities=21% Similarity=0.358 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-.|++.=++-.|-+++..++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456778888889999999999999999976 468888888754 242 45555542
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
..+|.+.+++ +|++|-..+.++.+++|+|+ +.-||+=-
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDV 226 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR------PGAVVVDV 226 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEc
Confidence 1258888887 99999999999999999996 45566543
No 220
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=78.01 E-value=15 Score=38.52 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=66.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc---CCCCCHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 458 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~---~~~~~L~ea 458 (542)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999887766555332 1 2 3688888873 222 223333332211 224689999
Q ss_pred HhccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 009138 459 VNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (542)
Q Consensus 459 V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 510 (542)
++. .||+|-+. +....|..++++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 99999654 323478888774 566788887544 368999874
No 221
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=77.96 E-value=4.4 Score=42.23 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=57.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc---ccCCCCCHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAV 459 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~---~~~~~~~L~eaV 459 (542)
-.++.|+|+|.-|..-++.+... .++ ++|++.|+. ..+ ...+...+.+ +.....+++|++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36899999999988888877654 233 788888864 222 2333333333 112346899999
Q ss_pred hccCCcEEEEccCCCC---CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 009138 460 NAIKPTILIGTSGQGR---TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 511 (542)
Q Consensus 460 ~~vkPtvLIG~S~~~g---~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~edA 511 (542)
+. .||++-++.... .|+.++++ +.-.|-++.--+ .+.|+.++-.
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHHh
Confidence 98 999998764433 68888886 455677776422 3468887643
No 222
>PRK06270 homoserine dehydrogenase; Provisional
Probab=77.89 E-value=17 Score=38.40 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=64.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHhhcCCChhhccCeEEEEcccccccCCCccCCchh-chhhccccC---------
Q 009138 384 QRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-KKPWAHEHE--------- 450 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~---~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~-k~~fA~~~~--------- 450 (542)
.||.++|.|..|.+++++|... +.++.|+. -+=.-++|++|.+.+.+. ++.. -..|+....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998653 22223431 122457899999888763 3221 122322211
Q ss_pred CCCCHHHHHhccCCcEEEEccCCC---CCCCHHH-HHHHHcCCCCcEEE
Q 009138 451 PVKELVDAVNAIKPTILIGTSGQG---RTFTKEV-VEAMASLNEKPIIF 495 (542)
Q Consensus 451 ~~~~L~eaV~~vkPtvLIG~S~~~---g~Fteev-v~~Ma~~~erPIIF 495 (542)
...++.|+++...+||+|=++... +-...++ .+++. +.++||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 123889999888899999877531 2223455 44554 3678887
No 223
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=77.70 E-value=2.1 Score=39.91 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
.||-|+|.|..|.+||+.|... |. +++..|+. .++ .+.....- .....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~~~~~~~g---~~~~~s~~e~~~~-- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---AEALAEAG---AEVADSPAEAAEQ-- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---HHHHHHTT---EEEESSHHHHHHH--
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---hhhhHHhh---hhhhhhhhhHhhc--
Confidence 5899999999999999999653 54 57777752 111 22222111 2234688888887
Q ss_pred CcEEEEccCCCCCCCHHHHHH--H-HcCCCCcEEEEcCCCCCCCCCCHHHH
Q 009138 464 PTILIGTSGQGRTFTKEVVEA--M-ASLNEKPIIFSLSNPTSQSECTAEEA 511 (542)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~--M-a~~~erPIIFaLSNPt~~aEct~edA 511 (542)
.|++|=+-.-+ .=.++++.. + +...+..||.=+|+-. +|.+-+-+
T Consensus 58 ~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~ 105 (163)
T PF03446_consen 58 ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELA 105 (163)
T ss_dssp BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHH
T ss_pred ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhh
Confidence 57776432211 223444444 2 3344666777777654 55554433
No 224
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.66 E-value=5 Score=41.23 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=57.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCc-----hhchhhccc-cCCCCCHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ-----HFKKPWAHE-HEPVKELVD 457 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~-----~~k~~fA~~-~~~~~~L~e 457 (542)
.||.|+|+|..|..+|..+..+ | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999999764 5 368888874211000000000 000000000 0001233 4
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009138 458 AVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 502 (542)
+++. +|++|=+.- . -..+++++.+... .+..+|..+.|...
T Consensus 70 ~~~~--~D~vil~vk-~-~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 70 ALAT--ADLVLVTVK-S-AATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred hccC--CCEEEEEec-C-cchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 5553 788874432 2 2457888888764 45578888889764
No 225
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.65 E-value=3 Score=41.33 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi 430 (542)
-+|+|+|||.||+..|..|... |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999998763 65 58888886543
No 226
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=77.18 E-value=9.5 Score=41.39 Aligned_cols=90 Identities=16% Similarity=0.261 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=|+..+.+|+.+++|++|-+. .|.-+|.||.. .|. .+.+|.++
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC--------------
Confidence 3556777888889999999999999999764 57777777754 242 35666442
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
.++|.+.++. +|++|-..+.++.++.|+|+ +.-||.=
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK------~GAvVID 301 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK------PGAVVID 301 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC------CCCEEEe
Confidence 1368888887 99999999999999999997 4556643
No 227
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=77.18 E-value=5.4 Score=35.95 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=47.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
||+++|+ |-.|-.|++.+.+. .|+ +=.+.+|++.=-..+. ++.+.-........-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999999762 343 3366788876111111 1111100000000112467777766
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
+||+|=.|.+. ...+.++...++ ..|+|..
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 77777666432 233444444433 4555554
No 228
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=77.06 E-value=7.7 Score=39.84 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=59.9
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch-hchhhcc-ccCCCCCHHH
Q 009138 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAH-EHEPVKELVD 457 (542)
Q Consensus 381 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~-~k~~fA~-~~~~~~~L~e 457 (542)
+++.+|+|.|| |-.|..+++.|++. | .+++.+|++---.....+.+.. .+..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 87888888888652 5 3677777652100000000000 0011111 2122346788
Q ss_pred HHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 009138 458 AVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLN-EKPIIFSLS 498 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~-erPIIFaLS 498 (542)
+++..+||++|=+.+.... .+..+++++...+ .+.|||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999988764311 1345567666544 457888644
No 229
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=76.80 E-value=2.3 Score=45.70 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=63.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCC--------ccCCchhchhhccc--
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--------LESLQHFKKPWAHE-- 448 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R--------~~~l~~~k~~fA~~-- 448 (542)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+= |..+. .+++-..|..-|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDV-VDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-ecCcccccccccChhcCCChHHHHHHHHH
Confidence 578899999999999999999999875 76 6899999762 22111 00121122222211
Q ss_pred ---c---------CCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 449 ---H---------EPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 449 ---~---------~~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
. ..+ .++.+.++. .|++|-++.- .=+.-++-.++..+..|.|++-
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 0 111 234566665 7888876542 2244556677766778988753
No 230
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.73 E-value=11 Score=38.55 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999988653 53 1368888874
No 231
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=76.69 E-value=5.1 Score=44.42 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=63.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc---ccCCCCCHHHHHhc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAVNA 461 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~---~~~~~~~L~eaV~~ 461 (542)
+|-|+|.|..|.++|..|... |. ++++.|++ .++ .++..+.-.. ......++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999999763 54 57777763 222 2222111000 01134689999986
Q ss_pred c-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 009138 462 I-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (542)
Q Consensus 462 v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 501 (542)
. +|+++| +.-.++...+++++.+.. ..+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 588555 344455678888887764 35678999899843
No 232
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=76.51 E-value=2.8 Score=38.97 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 387 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977755 365 348889987
No 233
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=76.34 E-value=7.8 Score=41.15 Aligned_cols=104 Identities=21% Similarity=0.386 Sum_probs=65.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc-ccccCCCccCCchhchhhcccc--CCCCCHHHHHh
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVN 460 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk-GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~eaV~ 460 (542)
.||.++|||..|...|-+|+. .++. +.+.|+|-. +...-... +|.+..-+.-.+. ....+ -+.++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~-DL~~~~~~~~~~~~i~~~~~-y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVAL-DLSHAAAPLGSDVKITGDGD-YEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhc-chhhcchhccCceEEecCCC-hhhhc
Confidence 389999999999999988833 3442 478999987 22111111 2332221111110 00023 45577
Q ss_pred ccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 461 AIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 461 ~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
. +|+.|=+.+.+ | ..-+++.+++++++...||+-.|||.
T Consensus 69 ~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv 121 (313)
T COG0039 69 G--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121 (313)
T ss_pred C--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH
Confidence 6 88887554443 4 24467889999999999999999997
No 234
>PRK07411 hypothetical protein; Validated
Probab=76.01 E-value=2.8 Score=45.11 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=65.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCc--------cCCchhchhhccc--
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL--------ESLQHFKKPWAHE-- 448 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~--------~~l~~~k~~fA~~-- 448 (542)
.+|++.||+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D-~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD-VVDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-EecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 578899999999999999999999875 76 689999987 2222110 0111112221210
Q ss_pred ---cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 449 ---HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 449 ---~~---------~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.+ .+ .+..+.++. .|++|-+..- .=+..+|..++.....|.|++-.
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~~ 161 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYGSI 161 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEE
Confidence 01 11 134455665 7888877652 23667777887777889887543
No 235
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.90 E-value=12 Score=39.42 Aligned_cols=91 Identities=16% Similarity=0.325 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-.|++.=++-.|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 3567788888899999999999999999764 67788888754 243 35555432
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
..+|.+.+++ +|++|-..+.++.|+.++|+ +..||+=-
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK------PGAVVVDV 229 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1357888887 99999999999999999997 55566543
No 236
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=75.83 E-value=12 Score=38.88 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=67.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc----cCCCCCHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~----~~~~~~L~e 457 (542)
.-.++.|+|+|.-|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999988887777653 233 677777763 22 233444444332 122478999
Q ss_pred HHhccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHH
Q 009138 458 AVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 511 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~edA 511 (542)
+++. .||++-+... ..+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9987 9999976432 24788888862 2345554 33334789998743
No 237
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.76 E-value=19 Score=38.79 Aligned_cols=132 Identities=16% Similarity=0.227 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCe
Q 009138 361 GTASVVLAGLISAMKFL--------------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (542)
Q Consensus 361 GTaaVvLAgll~Alr~~--------------------g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~ 420 (542)
-||-++++-+|.++|-. |..+.++|+.|+|+|..|..||+.|... | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57778888888888742 3568899999999999999999999663 3 12
Q ss_pred EEEEcccccccCCCccC-CchhchhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEE
Q 009138 421 IWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 421 i~lvDskGLi~~~R~~~-l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIF 495 (542)
|. +.+|... ....+..+|+ .-++.|...+ .|++|=..- .-++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 3444221 2233344444 3467777776 888874431 12689999999997 566776
Q ss_pred EcCCCCCCCCCCHHHHhccc-CCcEEEEeCC
Q 009138 496 SLSNPTSQSECTAEEAYTWS-QGRAIFASGS 525 (542)
Q Consensus 496 aLSNPt~~aEct~edA~~wt-~GraIfASGs 525 (542)
-.+.= +=|..++.++.- .|+ |+..|-
T Consensus 251 N~aRG---~iide~~l~eaL~sG~-i~~aGl 277 (336)
T KOG0069|consen 251 NTARG---AIIDEEALVEALKSGK-IAGAGL 277 (336)
T ss_pred ecccc---ccccHHHHHHHHhcCC-cccccc
Confidence 66553 234444333322 343 555553
No 238
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=75.56 E-value=5.9 Score=42.14 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~ 404 (542)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999976
No 239
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=75.18 E-value=4.2 Score=42.93 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+..+|||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 567899999999999999999663 42 2367777764
No 240
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=75.10 E-value=8.4 Score=42.69 Aligned_cols=95 Identities=14% Similarity=0.196 Sum_probs=61.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc--cCCCCCHHHHHhcc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 462 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~--~~~~~~L~eaV~~v 462 (542)
.|-|+|.|..|..+|..|+.. |. ++++.|+. ..+ .+..++.+... .....++.|+++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhc
Confidence 377999999999999999663 53 57777763 211 22222221111 11235788888654
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 009138 463 -KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSN 499 (542)
Q Consensus 463 -kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 499 (542)
+|+++| +.-.++...+++++.+..+ .+..||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444567788898887654 56789999998
No 241
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=75.08 E-value=6.3 Score=44.17 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=28.8
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+..+++.+++|+|||.||.+||..+.+ .|. +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 446888999999999777777776654 352 68888873
No 242
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.89 E-value=5.7 Score=32.51 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~ 431 (542)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 789999999999999998552 4 5789999877766
No 243
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=74.57 E-value=21 Score=37.86 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=61.7
Q ss_pred HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhh-ccccCCCCC
Q 009138 376 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKE 454 (542)
Q Consensus 376 ~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~f-A~~~~~~~~ 454 (542)
..|..+...++-|+|.|..|..||+.+. ++ |+ +|...|++.. ++..+.+ ++. -+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~y----~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGARY----VD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCcee----cc
Confidence 3456788999999999999999999996 43 54 4555565432 1111111 221 23
Q ss_pred HHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009138 455 LVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSN 499 (542)
Q Consensus 455 L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (542)
|.|.++. .|+++-.-- .-++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8888887 888875431 12689999999996 4556554444
No 244
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=74.51 E-value=14 Score=36.45 Aligned_cols=99 Identities=16% Similarity=0.282 Sum_probs=56.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHh-----hcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISK-----QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKEL 455 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~-----~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L 455 (542)
..++||.|+|.|..+. +|.-++..+.. +.|+ .-+-+.|..-+++.-- +-..+-..|++. |
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~~~~~~r~gl------~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l 103 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMINRFETERPSL------PAIALNTDNVVLTAIA--NDRLHDEVYAKQ------V 103 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhccccccCCCc------ceEEecCcHHHHHHHh--ccccHHHHHHHH------H
Confidence 4568999999998765 77777766542 1222 1222333332332211 122344555553 3
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCC
Q 009138 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSN 499 (542)
Q Consensus 456 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSN 499 (542)
.-..+ +-|++|++|..|. |+++++++. +...-|+|- +++
T Consensus 104 ~~~~~--~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~-IT~ 144 (196)
T PRK10886 104 RALGH--AGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVA-LTG 144 (196)
T ss_pred HHcCC--CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEE-EeC
Confidence 32222 4799999999774 788988764 444555554 444
No 245
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=74.36 E-value=20 Score=38.10 Aligned_cols=137 Identities=15% Similarity=0.257 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCccHHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcch
Q 009138 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE 393 (542)
Q Consensus 315 defv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs 393 (542)
.+.+..+ .+| .++++ +-.+. +.+.+.+.+| .++||+|- |-.-=-+=+||=++.-.+..|++|++.||+++|-+.
T Consensus 92 ~DTarvl-s~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~ 166 (334)
T PRK01713 92 KDTARVL-GRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDAR 166 (334)
T ss_pred HHHHHHH-HHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCc
Confidence 3344333 345 44433 33443 2334444454 46899993 222223456777777777777789999999999875
Q ss_pred HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-c---CCCCCHHHHHhccCCcEEEE
Q 009138 394 AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVDAVNAIKPTILIG 469 (542)
Q Consensus 394 Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~---~~~~~L~eaV~~vkPtvLIG 469 (542)
- ++++-++.++.+ .|+ ++.++-.+++.-.+ + .-+.-+.+++. . ....++.+++++ +||+.-
T Consensus 167 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt 231 (334)
T PRK01713 167 N--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHT 231 (334)
T ss_pred c--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 378877666665 475 68888888773321 1 11112334332 1 123689999998 999997
Q ss_pred cc
Q 009138 470 TS 471 (542)
Q Consensus 470 ~S 471 (542)
.+
T Consensus 232 ~~ 233 (334)
T PRK01713 232 DV 233 (334)
T ss_pred cc
Confidence 53
No 246
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=74.34 E-value=3 Score=43.52 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=34.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++|++.+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999875 76 789999987
No 247
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=74.31 E-value=12 Score=40.32 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh
Q 009138 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (542)
Q Consensus 363 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~ 441 (542)
.-+|-+|++.=|+-.|.+++.+++|++|-+. .|.-+|-||.. .|. .+.+|.++ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 4567788888889999999999999999764 57777777754 243 34555442 1
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 442 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
++|.+.++. +|++|-..+.++.|+.|+|+ +.-||.=-
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk------~GavVIDV 285 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK------PGAVVIDV 285 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEc
Confidence 257888887 99999999999999999997 45566533
No 248
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.06 E-value=24 Score=38.33 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=59.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc---CCCCCHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVD 457 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~---~~~~~L~e 457 (542)
+..+||+|+|.|-.|+++|++|.. .|. .+.++|.+-- +...+....+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999999865 363 5778886421 01111000111100 00111234
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeCC
Q 009138 458 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASGs 525 (542)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ | |+ |-++++.+.+.|-.|||
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~---s------~~--e~~~~~~~~~vIaITGT 125 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT---S------EM--EEFIKYCPAKVFGVTGS 125 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE---e------ch--HHhhhhcCCCEEEEECC
Confidence 444 378776444443 23455555554 346775 2 22 23444445578888997
No 249
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.94 E-value=4.6 Score=38.74 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=51.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc--------------cC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--------------HE 450 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~--------------~~ 450 (542)
+|.|+|||..|.|||-+++.+ |. ++.++|.+---...-.+.+......+.+. ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 688999999999999999774 64 78888885221100000011100001000 00
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 451 ~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
-..+|.+++ . .|.+|=.-.-.--.++++.+.+.+.+..=.||
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~il 110 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTIL 110 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEE
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceE
Confidence 114666666 3 67777655433346677888887776554555
No 250
>PRK06823 ornithine cyclodeaminase; Validated
Probab=73.37 E-value=25 Score=36.96 Aligned_cols=105 Identities=11% Similarity=0.181 Sum_probs=68.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc---cCCCCCHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 458 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~---~~~~~~L~ea 458 (542)
.-.++.++|+|.-+...++.++.. ..+ ++|++.|+. .++ ...+...+.+. .....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357999999999988888876653 122 678887773 222 22333222111 1123689999
Q ss_pred HhccCCcEEEEccC-CCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 009138 459 VNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 511 (542)
Q Consensus 459 V~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~edA 511 (542)
++. +||++-+.+ ...+|..++|+ +.-.|.+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 999997643 23478888886 455677776422 3689998754
No 251
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=73.31 E-value=6.4 Score=34.45 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=51.5
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEE
Q 009138 390 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG 469 (542)
Q Consensus 390 GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG 469 (542)
|.|..|.+++++|...-.. .+ -+=..++|+++++...+ ...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKDW--------AASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETTH--------HHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhhh--------hhhcccccccCCHHHHhcCcCCCEEEE
Confidence 8899999999999764211 01 13466778874444331 111122233478999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 470 TSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 470 ~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
+++ ....++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 954 4455555566665 2456664
No 252
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.24 E-value=9.5 Score=38.80 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeAr~~i~lvDsk 427 (542)
++|.|+|+|..|..+|..+... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999998653 4 21 2467777763
No 253
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.95 E-value=5 Score=40.55 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+=
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE
Confidence 689999999999999999774 76 7899999873
No 254
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=71.88 E-value=4.6 Score=39.58 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+++|+|||.||+..|..+.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999998754 353 58888864
No 255
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=71.50 E-value=20 Score=38.38 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhh
Q 009138 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 445 (542)
Q Consensus 366 vLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~f 445 (542)
+.|+.++|=.+..+. -.++.|+|+|.-+-..++ ++....++ ++|++.|+. . +....+...+
T Consensus 115 aAasavAa~~LA~~d--a~~laiIGaG~qA~~ql~----a~~~v~~~------~~I~i~~r~----~---~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKD--ASTLAIIGAGAQARTQLE----ALKAVRDI------REIRVYSRD----P---EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCC--CcEEEEECCcHHHHHHHH----HHHhhCCc------cEEEEEcCC----H---HHHHHHHHHH
Confidence 344556665555553 247889999986555444 44332343 567776663 1 1122222222
Q ss_pred ccc----cCCCCCHHHHHhccCCcEEEEccC-CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 009138 446 AHE----HEPVKELVDAVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 513 (542)
Q Consensus 446 A~~----~~~~~~L~eaV~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~ 513 (542)
.+. .....++++||++ .|+++.++. ..-.|+.++|+. .--|.-.=||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 222 2346799999998 999999853 234889999871 223444446777789999986654
No 256
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=71.26 E-value=1e+02 Score=35.01 Aligned_cols=191 Identities=20% Similarity=0.277 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCceeeeecCCCccHHH---HHHHHcCCC-----c-----e----eecCCcchHHHHHHHHH
Q 009138 309 EYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGTTH-----L-----V----FNDDIQGTASVVLAGLI 371 (542)
Q Consensus 309 ey~~~idefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~~~-----~-----~----FNDDiQGTaaVvLAgll 371 (542)
|-..+.-.||..+.+--||..=+==+|+. -..++ ++..|+..+ | + -|+-.--|+-=|..++=
T Consensus 159 Ei~r~~~~f~~el~~~iGp~~DvPapdig-~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250|consen 159 EIERITRRFTDELIDIIGPDTDVPAPDIG-TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccccc-cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHH
Confidence 33445566777777777887666677776 33333 677776321 1 1 14444556555555544
Q ss_pred HHHHHhC--CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhc-hhhccc
Q 009138 372 SAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAHE 448 (542)
Q Consensus 372 ~Alr~~g--~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k-~~fA~~ 448 (542)
+=++-.+ +.+++.|+++-|-|-.|.-.|..|.+. |- +-|=+-|++|.|...- .++..+ ..++..
T Consensus 238 ~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G~------kvvavsD~~G~l~np~--Gid~~eL~~~~~~ 304 (514)
T KOG2250|consen 238 AILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----GA------KVVAVSDSKGVLINPD--GIDIEELLDLADE 304 (514)
T ss_pred HHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----CC------EEEEEEcCceeEECCC--CCCHHHHHHHHHh
Confidence 4444455 789999999999999999988888664 42 5677899999998864 344332 233332
Q ss_pred cCCCCCHHHH--------------HhccCCcEEEEccCCCCCCCHHHHHHH-HcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 009138 449 HEPVKELVDA--------------VNAIKPTILIGTSGQGRTFTKEVVEAM-ASLNEKPIIFSLSN-PTSQSECTAEEAY 512 (542)
Q Consensus 449 ~~~~~~L~ea--------------V~~vkPtvLIG~S~~~g~Fteevv~~M-a~~~erPIIFaLSN-Pt~~aEct~edA~ 512 (542)
...++++.++ .---+.|+++=+.++ +.+|.|=.+.+ ++.| |+|.==|| ||+ || |++++
T Consensus 305 k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~vl 378 (514)
T KOG2250|consen 305 KKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEVL 378 (514)
T ss_pred hccccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHHH
Confidence 2222221111 111248999999998 68888777665 5545 89999999 553 33 34666
Q ss_pred cccCCcEEE
Q 009138 513 TWSQGRAIF 521 (542)
Q Consensus 513 ~wt~GraIf 521 (542)
+- .| |++
T Consensus 379 ek-~g-v~i 385 (514)
T KOG2250|consen 379 EK-AG-VLI 385 (514)
T ss_pred Hh-CC-eEE
Confidence 53 34 444
No 257
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=71.08 E-value=18 Score=35.47 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=42.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
||+|.|| |-.|..+++.+.+ .| .+++.+++. ..| + ....++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~-----------~~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-L-----------TDPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-C-----------CCHHHHHHHHHhCC
Confidence 6889996 9999999888865 24 357777763 111 2 11246888888889
Q ss_pred CcEEEEccCCC
Q 009138 464 PTILIGTSGQG 474 (542)
Q Consensus 464 PtvLIG~S~~~ 474 (542)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887643
No 258
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=70.88 E-value=12 Score=39.36 Aligned_cols=92 Identities=17% Similarity=0.331 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC
Q 009138 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (542)
Q Consensus 360 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l 438 (542)
.+--.+|-+|++.-++-.+.+|.+.++|++|.+. .|--+|.||..+ +. .+-+|+|+
T Consensus 133 ~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~-----na-------TVtvcHs~----------- 189 (283)
T COG0190 133 PGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNA-----NA-------TVTVCHSR----------- 189 (283)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhC-----CC-------EEEEEcCC-----------
Confidence 3455778899999999999999999999999986 467777777552 32 34555543
Q ss_pred chhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 439 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 439 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
.++|.+.++. +|++|-.-+.++.|+.|+|+ +..+|+
T Consensus 190 -------------T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk------~gavVI 225 (283)
T COG0190 190 -------------TKDLASITKN--ADIVVVAVGKPHFIKADMVK------PGAVVI 225 (283)
T ss_pred -------------CCCHHHHhhh--CCEEEEecCCcccccccccc------CCCEEE
Confidence 1357888887 99999999999999999986 455655
No 259
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.76 E-value=9.6 Score=38.49 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988653 53 68888853
No 260
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=70.66 E-value=5.5 Score=42.25 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||+++|||.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 689999976
No 261
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.30 E-value=14 Score=36.91 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=24.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
||.|+|+|..|..+++-|... |.. .+.+++.|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 689999999999999988653 532 245666664
No 262
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=69.86 E-value=6.1 Score=41.82 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=42.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHH
Q 009138 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 404 (542)
Q Consensus 359 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAg~GIA~ll~~ 404 (542)
--+||-++.-+++-+...+|.+|++..+.|+|| |..|.+||+.|.-
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 357899999999999999999999999999998 8999999999954
No 263
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=69.85 E-value=21 Score=36.95 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.6
Q ss_pred hCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh----------chhh
Q 009138 377 LGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----------KKPW 445 (542)
Q Consensus 377 ~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~----------k~~f 445 (542)
++..++..||+|.|| |-.|..+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 345577789999997 99999998888652 4 257777753 11111111111 0111
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 009138 446 AH-EHEPVKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 446 A~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 498 (542)
-. +-.+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 21222356777875 9999988875432 2457888887765568998753
No 264
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=69.60 E-value=3.2 Score=43.53 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~ 405 (542)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999774
No 265
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=69.58 E-value=10 Score=40.68 Aligned_cols=94 Identities=22% Similarity=0.394 Sum_probs=57.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc--ccCCCccCCchhchhhccc------cCCCCCH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHE------HEPVKEL 455 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL--i~~~R~~~l~~~k~~fA~~------~~~~~~L 455 (542)
.+|.|+|||+=|+++|..+.+. |- .=++|..|.+=. |-.+|. ...|-.. -.-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999774 41 236887764311 111121 1112211 1123589
Q ss_pred HHHHhccCCc-EEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcC
Q 009138 456 VDAVNAIKPT-ILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLS 498 (542)
Q Consensus 456 ~eaV~~vkPt-vLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLS 498 (542)
.++++. .| +|+++++ .+..++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs---~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPS---QALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECCh---HHHHHHHHHHhhhccCCCeEEEEe
Confidence 999996 45 4556555 477888888862 33555665555
No 266
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.32 E-value=5.9 Score=41.48 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||+++|||.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 76 689999987
No 267
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=68.67 E-value=1.6e+02 Score=31.01 Aligned_cols=136 Identities=13% Similarity=0.176 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCCceeeeecCCCccHHHHHHHHcCCCceeec--CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 009138 314 LHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND--DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391 (542)
Q Consensus 314 idefv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FND--DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GA 391 (542)
+.+.+..+. +| .++++ +-.+. +...+.+.+| .++||.|= +..-=-+=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~vls-~y-~D~iv-iR~~~-~~~~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTLS-GY-SDAIV-IRHPL-EGAARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHHH-Hh-CCEEE-EECCc-hhHHHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 344444443 45 33333 44444 3334444555 47999994 232222345677666655565 699999999997
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cC---CCCCHHHHHhccCCcEE
Q 009138 392 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HE---PVKELVDAVNAIKPTIL 467 (542)
Q Consensus 392 GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~---~~~~L~eaV~~vkPtvL 467 (542)
|.= .-+++-++.++.+ .|+ ++.++-.+|+- +++.....|+. .. ...++.|++++ +||+
T Consensus 159 ~~~-~~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKY-GRTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCC-CcHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 620 1345555555544 475 57777777661 22222223322 11 13689999998 9999
Q ss_pred EEccCC
Q 009138 468 IGTSGQ 473 (542)
Q Consensus 468 IG~S~~ 473 (542)
.-.+-+
T Consensus 221 yt~~~~ 226 (301)
T TIGR00670 221 YVTRIQ 226 (301)
T ss_pred EECCcc
Confidence 987754
No 268
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=68.39 E-value=6.3 Score=41.54 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi 430 (542)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999999443 123 579999986443
No 269
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=68.32 E-value=27 Score=37.34 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=26.6
Q ss_pred CceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..+|.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899999 999999999999663 53 47788874
No 270
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=68.12 E-value=19 Score=37.94 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
|++.+|.|+|+|.-|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999999865
No 271
>PRK06046 alanine dehydrogenase; Validated
Probab=68.02 E-value=34 Score=35.79 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=65.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc----cCCCCCHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~----~~~~~~L~e 457 (542)
.-.++.|+|+|..|...++.+... .++ ++++++|++ .++ .+.+.+.+.+. .....++.|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988887766542 233 688888885 222 22333333211 112357888
Q ss_pred HHhccCCcEEEEccC-CCCCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHH
Q 009138 458 AVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAEE 510 (542)
Q Consensus 458 aV~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaLS-NPt~~aEct~ed 510 (542)
+++ .|+++-++. ...+|..++++ +.-.|-++. +-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 799887653 23478888774 333566664 444578999874
No 272
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=67.89 E-value=5.8 Score=42.17 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=18.2
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~ 404 (542)
+|+|+|||.||...|..+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh
Confidence 68999999999999988865
No 273
>PRK08618 ornithine cyclodeaminase; Validated
Probab=67.86 E-value=14 Score=38.59 Aligned_cols=102 Identities=13% Similarity=0.213 Sum_probs=61.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc----cCCCCCHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~----~~~~~~L~e 457 (542)
...++.|+|+|..|-.++..++.. .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999998877666442 243 678888874 222 22333333211 112467899
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHH
Q 009138 458 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAE 509 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLS-NPt~~aEct~e 509 (542)
+++. .|++|-++..+ ..|+ ++++ +..-|.++- +--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9986 89999665433 2344 4442 444566663 32246788884
No 274
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=67.75 E-value=6 Score=41.48 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~ 404 (542)
.|+|+|||.||...|..+.+
T Consensus 2 DVvIVGaGpAG~~aA~~La~ 21 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR 21 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 48999999999999988865
No 275
>PRK07877 hypothetical protein; Provisional
Probab=67.58 E-value=15 Score=43.19 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch----------hchhhccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH----------FKKPWAHE 448 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~----------~k~~fA~~ 448 (542)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|-+=+=.+ +|+. .|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~s----NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELS----NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEccc----ccccccCChhhcccHHHHHHHH
Confidence 56889999999999 899999888775 63 268999998743221 2332 22222211
Q ss_pred -----cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009138 449 -----HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 449 -----~~~---------~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (542)
.+. + .++.+.+++ .|++|-+.- +.=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 011 1 256666665 788887664 334667777777778899998875
No 276
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=67.12 E-value=4.7 Score=45.71 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
++..|++++|||.-|++||+-|+.. |+ ++|.+||.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCee
Confidence 4568999999999999999999887 54 68999997543
No 277
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=67.09 E-value=9.9 Score=41.51 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=54.2
Q ss_pred HHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCC
Q 009138 372 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP 451 (542)
Q Consensus 372 ~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~ 451 (542)
.++.-....|...|++++|-+.-..++++.+.+ .|+... .+ .++.+.= ....+.+. .-+. .+
T Consensus 300 ~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v~----~~-~~~~~~~----~~~~~~~~-~~~~---~D 361 (432)
T TIGR01285 300 DAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQIV----AA-VTTTGSP----LLQKLPVE-TVVI---GD 361 (432)
T ss_pred HHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEEE----EE-EeCCCCH----HHHhCCcC-cEEe---CC
Confidence 444444446678999999988889999999754 487321 11 2222100 00011111 1111 22
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 009138 452 VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 494 (542)
Q Consensus 452 ~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 494 (542)
...|++.++..+||++||-|- .+.+-+.+ .-|.|
T Consensus 362 ~~~l~~~i~~~~~dliig~s~-----~k~~A~~l----~ip~i 395 (432)
T TIGR01285 362 LEDLEDLACAAGADLLITNSH-----GRALAQRL----ALPLV 395 (432)
T ss_pred HHHHHHHHhhcCCCEEEECcc-----hHHHHHHc----CCCEE
Confidence 346788999999999998663 23344333 57776
No 278
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=66.73 E-value=6.3 Score=36.48 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 387 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998863 1123468999999655
No 279
>PRK12828 short chain dehydrogenase; Provisional
Probab=66.49 E-value=13 Score=35.03 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=24.8
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++++.+++|.|| |..|..+|+.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 467789999997 5566666666643 353 58888874
No 280
>PRK06184 hypothetical protein; Provisional
Probab=66.42 E-value=7.2 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=26.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++..|+|+|||.||+..|-+|.+ .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 46789999999999999988865 365 35666654
No 281
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=66.35 E-value=17 Score=37.45 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh--chhhccccCCCCCHHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAHEHEPVKELVDA 458 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~--k~~fA~~~~~~~~L~ea 458 (542)
....||.|+|||+.|..+|-.|.++ | .++.++++... ..-+...+.-. ...+-.......+-.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED 69 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh
Confidence 3456899999999999999888663 4 24555554321 11000001000 00000000001111223
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009138 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 502 (542)
+. .+|++| ++... .-++++++.++.. .+..+|+.|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 367776 54433 3467888877653 35667888888654
No 282
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=66.34 E-value=20 Score=38.08 Aligned_cols=135 Identities=19% Similarity=0.312 Sum_probs=80.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccC--CCCCHH
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE--PVKELV 456 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~--~~~~L~ 456 (542)
++.+..||.++|+|..|+++|-.|+.. |++ +++.++|-+==-.++-.=+|+ |-.+|-+... ..++..
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MDLq-H~s~f~~~~~V~~~~Dy~ 84 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMDLQ-HGSAFLSTPNVVASKDYS 84 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhhhc-cccccccCCceEecCccc
Confidence 455678999999999999999998763 663 578899965221122111243 3345554321 112332
Q ss_pred HHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 009138 457 DAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAI 520 (542)
Q Consensus 457 eaV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~--GraI 520 (542)
.. + ..++.|=+.+.-+. .=+.+|.++.++.+.-|++-.|||. ++.---+++.|. -..+
T Consensus 85 ~s-a--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV---DilTYv~wKLSgfP~nRV 158 (332)
T KOG1495|consen 85 VS-A--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV---DILTYVTWKLSGFPKNRV 158 (332)
T ss_pred cc-C--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch---HHHHHHHHHHcCCcccce
Confidence 21 1 24556544443322 2256777888999999999999997 554444444432 1346
Q ss_pred EEeCCCCCCc
Q 009138 521 FASGSPFDPF 530 (542)
Q Consensus 521 fASGspf~pv 530 (542)
|.||.-.+..
T Consensus 159 iGsGcnLDsa 168 (332)
T KOG1495|consen 159 IGSGCNLDSA 168 (332)
T ss_pred eccCcCccHH
Confidence 6777655543
No 283
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=66.25 E-value=7.3 Score=40.85 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
.+|+|+|||-+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999998763 5 3688998864
No 284
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.16 E-value=8.1 Score=40.83 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999865 75 789999987
No 285
>PRK13938 phosphoheptose isomerase; Provisional
Probab=66.10 E-value=38 Score=33.40 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=53.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh-ccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHh
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee-Ar~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~ 460 (542)
.+.||.|+|.|..|. +|+.+...|.. ++..+- +-..+-++.....++.- . +-..+-..|++. +.-.++
T Consensus 44 ~g~rI~i~G~G~S~~-~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~-nd~~~~~~~~~~------~~~~~~ 112 (196)
T PRK13938 44 AGARVFMCGNGGSAA-DAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-A-NDYDYDTVFARA------LEGSAR 112 (196)
T ss_pred CCCEEEEEeCcHHHH-HHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-h-ccccHHHHHHHH------HHhcCC
Confidence 578999999998864 66666655532 111100 00112222111111100 0 001222233321 222232
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 009138 461 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (542)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 501 (542)
+-|++|++|..| =|+++++.+. +...-|+|.=-+||.
T Consensus 113 --~~DllI~iS~SG--~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 113 --PGDTLFAISTSG--NSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred --CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 479999999977 6899999874 455566666555554
No 286
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=66.09 E-value=3.6 Score=43.30 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=52.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCC----chhchhhcc-ccCCCCCHHHHHh
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL----QHFKKPWAH-EHEPVKELVDAVN 460 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l----~~~k~~fA~-~~~~~~~L~eaV~ 460 (542)
|+|+|||..|-.+++.|++. ... .++.+.|++ .++.+.+ ...+-.+.+ +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 78999999999999988653 111 278888875 1111111 011111111 1222345889998
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
+ .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8 69999988754 788888876542 345554
No 287
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=66.02 E-value=27 Score=40.45 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=61.7
Q ss_pred HHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEE
Q 009138 343 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 422 (542)
Q Consensus 343 ~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~ 422 (542)
.+++||..+|--|+-... .++.|- ...++.||+++|.|..|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF--~~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKF--ELSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhh--hhhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 112222 12289999999999988877766655 476 6788
Q ss_pred EEcccccccCCCccCCchhchhhccc-c----------CCCCCHHHHHhccCCcEEEEccCCC
Q 009138 423 LVDSKGLIVSSRLESLQHFKKPWAHE-H----------EPVKELVDAVNAIKPTILIGTSGQG 474 (542)
Q Consensus 423 lvDskGLi~~~R~~~l~~~k~~fA~~-~----------~~~~~L~eaV~~vkPtvLIG~S~~~ 474 (542)
.+|.+=. .++.. .+.+. .+-|++ . ....++.|+++. .|++|=+|..+
T Consensus 158 ~vd~D~v-~SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 158 AIVTDAE-EHALD-RIHEL-AEIAEETDDALLVQEIDFAEDQHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred EEecccc-chhhh-HHHHH-HHHHHHhCCCCceEeccCCcchhHHHhhcC--CcEEEEECCCC
Confidence 8876644 22111 01122 333332 1 123478888877 68888777755
No 288
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=65.85 E-value=23 Score=35.62 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=56.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCcc--CCchhchhhcc-c----cCCCC
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE--SLQHFKKPWAH-E----HEPVK 453 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~--~l~~~k~~fA~-~----~~~~~ 453 (542)
+++.||.|+|+|.-|..|+..|... |.- ..++++.+|++- .+.. ..++.+..... + .-+-.
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~D~Vilavkp~ 68 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPSK----KNTPFVYLQSNEELAKTCDIIVLAVKPD 68 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCCh----hcCCeEEeCChHHHHHhCCEEEEEeCHH
Confidence 3457899999999999999998753 321 124688888642 1100 01111100100 0 00011
Q ss_pred CHHHHHhccCC---cEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 454 ELVDAVNAIKP---TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 454 ~L~eaV~~vkP---tvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
.+.++++.++| +-+| +|-..| ++.+.++.+-. ..++++-.+.|..
T Consensus 69 ~~~~vl~~i~~~l~~~~i-IS~~aG-i~~~~l~~~~~-~~~~vvr~mPn~p 116 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLL-ISICGG-LNLKTLEEMVG-VEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHHhhccCCEE-EEEeCC-ccHHHHHHHcC-CCCeEEEECCCch
Confidence 34444444432 2233 565554 67788887642 2456777888865
No 289
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=65.73 E-value=30 Score=38.72 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 46899999999999999998764 64 57778764
No 290
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=65.70 E-value=24 Score=37.76 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999865
No 291
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=65.48 E-value=16 Score=39.86 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhc----
Q 009138 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---- 446 (542)
Q Consensus 371 l~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA---- 446 (542)
..++.-....|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .... ++....+....
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~-~d~~~l~~~~~~~~~ 377 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTE-EDYARIRELMGEGTV 377 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCH-HHHHHHHHHcCCCeE
Confidence 4444444567889999999888888999998744 4872 3333211 1111 10101111110
Q ss_pred -cccCCCCCHHHHHhccCCcEEEEc
Q 009138 447 -HEHEPVKELVDAVNAIKPTILIGT 470 (542)
Q Consensus 447 -~~~~~~~~L~eaV~~vkPtvLIG~ 470 (542)
.+..+...+++.++..+||++||-
T Consensus 378 v~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 378 MLDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011123468888999999999985
No 292
>PRK06847 hypothetical protein; Provisional
Probab=65.39 E-value=8 Score=39.72 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999998865
No 293
>PRK07236 hypothetical protein; Provisional
Probab=65.38 E-value=8.7 Score=40.12 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~ 405 (542)
++..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC
Confidence 4568999999999999999999763
No 294
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=65.29 E-value=9.8 Score=40.82 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhc-----c
Q 009138 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA-----H 447 (542)
Q Consensus 373 Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA-----~ 447 (542)
++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+. .
T Consensus 277 ~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~v~ 340 (410)
T cd01968 277 ELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTVIV 340 (410)
T ss_pred HHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcEEE
Confidence 33444456678899999988888999987743 4873 3333111 1111 11111111110 0
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccC
Q 009138 448 EHEPVKELVDAVNAIKPTILIGTSG 472 (542)
Q Consensus 448 ~~~~~~~L~eaV~~vkPtvLIG~S~ 472 (542)
...+...+.+.++..+||++||-|-
T Consensus 341 ~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 341 DDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred eCCCHHHHHHHHhhcCCCEEEECCc
Confidence 0111234678889999999999754
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=65.27 E-value=13 Score=39.18 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=51.5
Q ss_pred cCCcchHHHHHHHHHHHHHH-hCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCc
Q 009138 357 DDIQGTASVVLAGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL 435 (542)
Q Consensus 357 DDiQGTaaVvLAgll~Alr~-~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~ 435 (542)
|+..+.-+=-+|.-+.+... .+.+..+ +++|+|||+.|+..+.+... .|. ++|+++|.. ..|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~~----~~R- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDRS----PER- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCCC----HHH-
Confidence 34444444444444334222 2333333 99999999999877433322 464 689988863 322
Q ss_pred cCCchhchhhccc--cCCCC-CHHHHH----hccCCcEEEEccCCC
Q 009138 436 ESLQHFKKPWAHE--HEPVK-ELVDAV----NAIKPTILIGTSGQG 474 (542)
Q Consensus 436 ~~l~~~k~~fA~~--~~~~~-~L~eaV----~~vkPtvLIG~S~~~ 474 (542)
|+..++.++-+ ..... ...+.+ .+...|+.|=+|+..
T Consensus 206 --l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 206 --LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred --HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 33333333322 11111 222222 223689999888833
No 296
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=65.08 E-value=4.6 Score=41.62 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=27.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999999988875421 1 1347999997754
No 297
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=65.03 E-value=9.1 Score=37.55 Aligned_cols=112 Identities=13% Similarity=0.193 Sum_probs=61.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccC---CCCCHH
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---PVKELV 456 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~---~~~~L~ 456 (542)
+|++.++||+|+|..|.-.|+.|..+ | .+|++++.+ ..+.-..++.... ....+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~~----------~~~~l~~l~~~~~i~~~~~~~~ 64 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISPE----------LTENLVKLVEEGKIRWKQKEFE 64 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcCC----------CCHHHHHHHhCCCEEEEecCCC
Confidence 57899999999999999988888663 4 378888642 1111111111100 001111
Q ss_pred -HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEE
Q 009138 457 -DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 522 (542)
Q Consensus 457 -eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfA 522 (542)
+-+. ++|++|.++..+ ..++.+- ..|+ ++-++=.-.+| .+|++---.....|...+|
T Consensus 65 ~~~l~--~adlViaaT~d~-elN~~i~-~~a~--~~~lvn~~d~~---~~~~f~~Pa~~~~g~l~ia 122 (202)
T PRK06718 65 PSDIV--DAFLVIAATNDP-RVNEQVK-EDLP--ENALFNVITDA---ESGNVVFPSALHRGKLTIS 122 (202)
T ss_pred hhhcC--CceEEEEcCCCH-HHHHHHH-HHHH--hCCcEEECCCC---ccCeEEEeeEEEcCCeEEE
Confidence 2233 389999877654 4554443 3343 22233334445 4676644444556777665
No 298
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.74 E-value=8 Score=40.12 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.4
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
..+|+|+|||.||+..|-.|.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988865
No 299
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=64.67 E-value=32 Score=33.85 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=44.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh----chhhcc-ccCCCCCHHHH
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----KKPWAH-EHEPVKELVDA 458 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~----k~~fA~-~~~~~~~L~ea 458 (542)
+|+|.|| |..|..+++.|+.. |- ..+++.+|+... ..+.+.+... ...+-. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88888888887653 31 136777775211 0111111111 111111 22223468888
Q ss_pred HhccCCcEEEEccCCC
Q 009138 459 VNAIKPTILIGTSGQG 474 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~ 474 (542)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 300
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.56 E-value=24 Score=37.68 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=28.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+++.+++|.|+|..|.++|+.+.+ .|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 567899999999999999888865 363 68888864
No 301
>PLN02688 pyrroline-5-carboxylate reductase
Probab=64.49 E-value=25 Score=34.87 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=50.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEE-cccccccCCCccCCchhchhhcccc-CCCCCHHHHHhcc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAI 462 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lv-DskGLi~~~R~~~l~~~k~~fA~~~-~~~~~L~eaV~~v 462 (542)
||.|+|.|..|.+||+-|+.. |.- -..+|+++ |+. .++ . +.+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998653 420 02367777 542 111 1 1111111 112456676664
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 501 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 501 (542)
.|++| ++..+ ...+++++.+... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 56555 33333 3456666665432 3344555555444
No 302
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=64.47 E-value=34 Score=37.38 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=78.6
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccC--eEEEE--cccccccCCCccCCchhchhhccccCCCCCHHH
Q 009138 383 DQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRK--KIWLV--DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (542)
Q Consensus 383 d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~--~i~lv--DskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 457 (542)
=.||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+ |.+-=..++-.-+|.+-.-++.....-..+-.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH
Confidence 479999999 99999999987652 44110 01 34455 442111111111132222233221100123456
Q ss_pred HHhccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 009138 458 AVNAIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAI 520 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt~~aEct~edA~~wt~--GraI 520 (542)
.+++ .|++|=+.+.+.. -| +++.+.+.++. +..||+--|||- .+..--+++++. .+-+
T Consensus 117 ~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~rv 191 (387)
T TIGR01757 117 VFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRKN 191 (387)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCcccE
Confidence 7777 8999877666421 12 46777777755 899999999996 666667777662 2457
Q ss_pred EEeCCCCCC
Q 009138 521 FASGSPFDP 529 (542)
Q Consensus 521 fASGspf~p 529 (542)
|.||.-.+.
T Consensus 192 iG~gT~LDs 200 (387)
T TIGR01757 192 FHALTRLDE 200 (387)
T ss_pred EEecchhHH
Confidence 888865543
No 303
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=64.42 E-value=9.8 Score=35.94 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
+|++.++||+|+|..|.-.++.|+.+ | .++.+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcC
Confidence 57899999999999999999888763 4 36777754
No 304
>PRK09126 hypothetical protein; Provisional
Probab=64.11 E-value=8.2 Score=40.00 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4679999999999999998866
No 305
>PRK05866 short chain dehydrogenase; Provisional
Probab=64.09 E-value=17 Score=36.71 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=25.0
Q ss_pred CCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 378 GGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 378 g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+..+++.++||.|| |-.|..+|+.++ + .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La----~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFA----R-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHH----H-CC-------CEEEEEECC
Confidence 45577889999998 444445555553 3 35 368888875
No 306
>PRK05993 short chain dehydrogenase; Provisional
Probab=63.93 E-value=18 Score=35.84 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=51.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-ccCCCCCHHHHHhc
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNA 461 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~-~~~~~~~L~eaV~~ 461 (542)
.++||.|| |-.|..+|+.+++ .|. ++++++++- +..+.+......+-. +..+..++.++++.
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G~-------~Vi~~~r~~----~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DGW-------RVFATCRKE----EDVAALEAEGLEAFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECCH----HHHHHHHHCCceEEEccCCCHHHHHHHHHH
Confidence 57899998 5566666666543 353 688887641 100011111111111 21122344444443
Q ss_pred c------CCcEEEEccCCC--CCC----------------------CHHHHHHHHcCCCCcEEEEcC
Q 009138 462 I------KPTILIGTSGQG--RTF----------------------TKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 462 v------kPtvLIG~S~~~--g~F----------------------teevv~~Ma~~~erPIIFaLS 498 (542)
+ ++|++|=..+.+ +.| ++.++..|.+....-|||.=|
T Consensus 69 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS 135 (277)
T PRK05993 69 VLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSS 135 (277)
T ss_pred HHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECC
Confidence 3 689999776543 222 445677776655556777544
No 307
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.67 E-value=16 Score=34.87 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 381 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+++.+++|.|| |..|..+|+.+++ .|. +++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g~-------~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EGA-------KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 56789999996 6677777777754 353 68887764
No 308
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=63.55 E-value=6 Score=41.00 Aligned_cols=32 Identities=38% Similarity=0.838 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..+-|+|||-.|.|||+..+.+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678899999999999988774 65 79999985
No 309
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=63.51 E-value=26 Score=38.51 Aligned_cols=120 Identities=21% Similarity=0.263 Sum_probs=84.9
Q ss_pred ecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCc
Q 009138 356 NDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL 435 (542)
Q Consensus 356 NDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~ 435 (542)
.|.-.||+--++-|++. .|..-|....+|+.|=|--|-|||..+.. .|. ++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~GA-------~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MGA-------RVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CCC-------eEEEEec---------
Confidence 37778999999999875 45677889999999999999999988743 242 4554332
Q ss_pred cCCchhchhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 009138 436 ESLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (542)
Q Consensus 436 ~~l~~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 510 (542)
+|.+.-=|. +.=...++.||++. .|++|=+++.-++++.|..+.|. +. .|+ +|-- -.-|+..+.
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk---Dg-aIl--~N~GHFd~EI~~~~ 306 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK---DG-AIL--ANAGHFDVEIDVAG 306 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc---CC-eEE--ecccccceeccHHH
Confidence 222222222 22334689999998 89999999999999999999996 34 443 3322 235666654
No 310
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=63.51 E-value=9.5 Score=40.55 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
.||||+|+|.||+..|..|.+. |- .-+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999988553 21 137888888754
No 311
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=63.36 E-value=7.9 Score=40.44 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.6
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999999865
No 312
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=62.89 E-value=7.4 Score=41.87 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999652 11 1368888875
No 313
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=62.85 E-value=13 Score=36.99 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=57.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc--ccCCCCCHHHH-Hh
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHEPVKELVDA-VN 460 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~--~~~~~~~L~ea-V~ 460 (542)
.+|+|+|+|..|..+|+.|... | .++.++|.+--.... .+.+..--.+. +....+.|++| +.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 3799999999999999999763 4 468888875221111 01100001111 22233567777 66
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcE-EEEcCCCC
Q 009138 461 AIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPI-IFSLSNPT 501 (542)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPI-IFaLSNPt 501 (542)
. .|++|-+++.. -.--++-.|+.. ..-|- |-=..||.
T Consensus 66 ~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 66 D--ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred c--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 5 99999888754 344555555532 23444 44455553
No 314
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.63 E-value=14 Score=38.44 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=79.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh------------chhhcc
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF------------KKPWAH 447 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~------------k~~fA~ 447 (542)
+|++++|+++|.|-.|--+++.|+.. |+ .+|.++|-+-+=..+-...+... ++.+..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~ 95 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQ 95 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHh
Confidence 58899999999999999999888764 76 78999999866443321111111 111111
Q ss_pred ccCCC-----------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc-----CCCC-------CCC
Q 009138 448 EHEPV-----------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL-----SNPT-------SQS 504 (542)
Q Consensus 448 ~~~~~-----------~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL-----SNPt-------~~a 504 (542)
-.+.+ .++.+-+.. .||-+|=+.- .+=++--+-+-+..++.|+|=.+ +||| ++.
T Consensus 96 InP~c~V~~~~~f~t~en~~~~~~~-~~DyvIDaiD--~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri~v~DiskT 172 (263)
T COG1179 96 INPECEVTAINDFITEENLEDLLSK-GFDYVIDAID--SVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQVADISKT 172 (263)
T ss_pred hCCCceEeehHhhhCHhHHHHHhcC-CCCEEEEchh--hhHHHHHHHHHHHHcCCCEEeeccccCCCCCceEEeeechhh
Confidence 01111 245554444 6777776553 12334334444567788999877 6787 444
Q ss_pred CCCHHHHh-----c--ccCC----cEEEEeCCCCCCc
Q 009138 505 ECTAEEAY-----T--WSQG----RAIFASGSPFDPF 530 (542)
Q Consensus 505 Ect~edA~-----~--wt~G----raIfASGspf~pv 530 (542)
+-.|=-+. + +.++ .|+|.+-.|-+|-
T Consensus 173 ~~DPLa~~vR~~LRk~~~~~~~gi~vVfS~E~~~~P~ 209 (263)
T COG1179 173 IQDPLAAKVRRKLRKRFPKIKFGVPVVFSTENPVYPQ 209 (263)
T ss_pred ccCcHHHHHHHHHHHhccCCccCCceEecCCCCCCCc
Confidence 54443221 1 1122 3578777776663
No 315
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=62.62 E-value=38 Score=34.64 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
.||.|+|+|..|-.+|.-|.. .|.- ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 379999999999999998864 2531 2346888886
No 316
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=62.58 E-value=14 Score=41.18 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 457899999999999999988754 363 47888864
No 317
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=62.46 E-value=9.3 Score=38.68 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
+..++|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5689999999999999987754 354 688888764
No 318
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=62.44 E-value=10 Score=37.49 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeec
Confidence 38999999999999999876 36 379999998
No 319
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.41 E-value=11 Score=39.05 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+..+|+|+|||.||+..|-+|.+.- +.|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 3457999999999999998886520 0154 57777773
No 320
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=62.17 E-value=8.8 Score=39.79 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=24.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977753 253 677888653
No 321
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=61.68 E-value=22 Score=40.36 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=63.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc--cCCCccCCchhchhhccccCCCCCHHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi--~~~R~~~l~~~k~~fA~~~~~~~~L~eaV 459 (542)
.+--++|+|.|..|+|||.-++. .|+ ++.||+++-+- |++|..+|=+--..|+... +.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~-e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQY-EFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhc-chHHHHHHH
Confidence 55679999999999999998866 487 58899988775 5666556767677777542 222244665
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEEcCC
Q 009138 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSN 499 (542)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSN 499 (542)
+. .+++..+|.|. +.|.+||..+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~ 102 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLP 102 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccC
Confidence 54 37888888765 5667888877
No 322
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=61.65 E-value=11 Score=41.42 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456799999999999999988865
No 323
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=61.45 E-value=58 Score=34.88 Aligned_cols=115 Identities=14% Similarity=0.219 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhC-CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhcc
Q 009138 341 AFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (542)
Q Consensus 341 Af~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g-~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr 418 (542)
+.+.+.+| ..+||+|- |-..=-+=+||=++.-.+..| +++++.+|.++|-+.- ++++-++.++.+ .|+
T Consensus 113 ~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~~Sl~~~~~~-~g~------ 182 (336)
T PRK03515 113 IVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMGNSLLEAAAL-TGL------ 182 (336)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHHHHHHHHHHH-cCC------
Confidence 34444454 47999993 222333456777777777766 4799999999998632 477777666655 475
Q ss_pred CeEEEEcccccccCCCccCCchhchhhccc-cC---CCCCHHHHHhccCCcEEEEcc
Q 009138 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HE---PVKELVDAVNAIKPTILIGTS 471 (542)
Q Consensus 419 ~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~---~~~~L~eaV~~vkPtvLIG~S 471 (542)
++.++--+|+.-.. + +-..-+.+++. .. -..++.|++++ +||+.-.+
T Consensus 183 -~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 183 -DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred -EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecC
Confidence 68888887773321 1 11112233332 11 13689999998 99999864
No 324
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=61.30 E-value=10 Score=40.19 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=28.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~ 431 (542)
+-.|+|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCC
Confidence 34689999999999999999774 64 567777765543
No 325
>PRK07233 hypothetical protein; Provisional
Probab=61.20 E-value=8.9 Score=39.87 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=24.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||+|+|||-||+..|..|.+. |. ++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G~-------~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----GH-------EVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEEeC
Confidence 689999999999999888653 52 56666665
No 326
>PLN02240 UDP-glucose 4-epimerase
Probab=61.18 E-value=21 Score=36.28 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=59.8
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch------hchhhcc-ccCC
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH------FKKPWAH-EHEP 451 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~------~k~~fA~-~~~~ 451 (542)
.|+..+|+|.|| |-.|..+++.|++. | .+++++|+..--.......+.. .+..+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 88888888887652 4 3688887542100000000000 0111111 1122
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEEc
Q 009138 452 VKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 452 ~~~L~eaV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaL 497 (542)
..++.++++..++|++|=+.+.... -+..++++|.+.+-+.+||.=
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 131 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSS 131 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2457777777789999987764321 123566777665556788753
No 327
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=61.13 E-value=31 Score=36.04 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCC--CcEEEEcCCCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMASLNE--KPIIFSLSNPT 501 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~e--rPIIFaLSNPt 501 (542)
+-|++||+|..| =|+++++++....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG--~T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASG--RTPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 469999999977 47888888753333 35544334555
No 328
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.12 E-value=12 Score=36.92 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=29.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+|+++|+||+|+|..|..-++.|+.+ | .+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999888764 5 368888764
No 329
>PRK06475 salicylate hydroxylase; Provisional
Probab=61.03 E-value=9.2 Score=40.21 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.8
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~ 404 (542)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988755
No 330
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=60.87 E-value=28 Score=35.29 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||.|+|+|..|.++|..++.. |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777764
No 331
>PRK12829 short chain dehydrogenase; Provisional
Probab=60.44 E-value=23 Score=34.10 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=23.5
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+++.+++|.|| |..|..+|+++++ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~-----~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAE-----AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 378899999998 4444445555533 353 58888753
No 332
>PLN02268 probable polyamine oxidase
Probab=60.21 E-value=4.4 Score=42.93 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcC--CChhhccC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTN--MPLEETRK 419 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G--~s~eeAr~ 419 (542)
+|+|+|||-||+..|..|.+. | +..=||+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-----g~~v~vlEa~~ 33 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-----SFKVTLLESRD 33 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-----CCeEEEEeCCC
Confidence 789999999999999999663 4 33455555
No 333
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=59.99 E-value=31 Score=36.42 Aligned_cols=38 Identities=26% Similarity=0.157 Sum_probs=27.4
Q ss_pred CCHHHHHhccCCcE-EEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 453 KELVDAVNAIKPTI-LIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 453 ~~L~eaV~~vkPtv-LIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
+.|.+.... .|+ ++|-|-..+ |-.-++++|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 356777776 888 777664332 5556899999 6899997
No 334
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=59.89 E-value=49 Score=34.48 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=24.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
.--.+++++|+|+|+.|...+.+. .+ .|. ++++.+|+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~A-k~----~G~------~~Vi~~~~ 218 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGA-RM----AKA------SRIIAIDI 218 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HH----cCC------CeEEEEcC
Confidence 334578999999997776655544 22 363 46777765
No 335
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=59.46 E-value=32 Score=36.18 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=58.0
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh--chhhcc-ccCCCCCHHH
Q 009138 382 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAH-EHEPVKELVD 457 (542)
Q Consensus 382 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~--k~~fA~-~~~~~~~L~e 457 (542)
+++||+|.|| |-.|..+++.|.. .|. +++.+|+..- ..+... ...|-. +..+...+.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G~-------~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EGH-------YIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CCC-------EEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999999988865 253 6888886431 011110 111211 1112234555
Q ss_pred HHhccCCcEEEEccCCCC--C---------------CCHHHHHHHHcCCCCcEEEEcC
Q 009138 458 AVNAIKPTILIGTSGQGR--T---------------FTKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 458 aV~~vkPtvLIG~S~~~g--~---------------Fteevv~~Ma~~~erPIIFaLS 498 (542)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 565 4899998875431 1 2356777777666678988644
No 336
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=59.43 E-value=11 Score=36.53 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=23.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 47999999999999987754 354 466666653
No 337
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=59.34 E-value=28 Score=37.38 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc---
Q 009138 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--- 447 (542)
Q Consensus 371 l~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~--- 447 (542)
..++......|...|++|+|-+.-..++++.+.+ .|+.. ..+ |-=+.++ +...+..+.+..
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e-----lGm~v-------v~~---~t~~~~~-~~~~~~~~~l~~~~~ 327 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR-----CGMIV-------VEV---GTPYLDK-RFQAAELELLPPMVR 327 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH-----CCCEE-------Eee---CCCcCCh-HHHHHHHHhcCCCCe
Confidence 4444555566778899999999989999999976 37632 111 1001111 111111111111
Q ss_pred --ccCCCCCHHHHHhccCCcEEEE
Q 009138 448 --EHEPVKELVDAVNAIKPTILIG 469 (542)
Q Consensus 448 --~~~~~~~L~eaV~~vkPtvLIG 469 (542)
+..+...+++.++..|||.+||
T Consensus 328 v~~~~d~~~l~~~i~~~~pDlli~ 351 (396)
T cd01979 328 IVEKPDNYRQLDRIRELRPDLVVT 351 (396)
T ss_pred EEECCCHHHHHHHHHhcCCCEEEe
Confidence 1122234577899999999998
No 338
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=59.11 E-value=66 Score=29.93 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 501 (542)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 369999999977 6888888764 444456665444444
No 339
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=58.91 E-value=12 Score=42.69 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=27.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+.+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 56899999999999999998865 353 47778764
No 340
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=58.86 E-value=9.6 Score=39.83 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
.+|||+|+|.||+..|+.|... +- .-+|.+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCC
Confidence 4899999999999999988552 11 23677777654
No 341
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=58.75 E-value=36 Score=36.87 Aligned_cols=117 Identities=19% Similarity=0.309 Sum_probs=79.8
Q ss_pred HHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCC
Q 009138 375 KFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE 454 (542)
Q Consensus 375 r~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~ 454 (542)
|.|..-+.....|+.|=|-.|-|+|..|.. .| .++++ |+- |.+..-|. |-+.-+..+
T Consensus 206 raTDvM~aGKv~Vv~GYGdVGKgCaqaLkg-----~g-------~~Viv-------TEi--DPI~ALQA--aMeG~~V~t 262 (434)
T KOG1370|consen 206 RATDVMIAGKVAVVCGYGDVGKGCAQALKG-----FG-------ARVIV-------TEI--DPICALQA--AMEGYEVTT 262 (434)
T ss_pred hhhhheecccEEEEeccCccchhHHHHHhh-----cC-------cEEEE-------ecc--CchHHHHH--HhhccEeee
Confidence 456777888899999999999999887743 23 34443 221 22332222 123445689
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC---------------HH-HHhcccCCc
Q 009138 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECT---------------AE-EAYTWSQGR 518 (542)
Q Consensus 455 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~aEct---------------~e-dA~~wt~Gr 518 (542)
|+||++. .|+++-+.+.-.+++.+-.+.|. +.-|+--+---. .|++ |+ |=|.|.+||
T Consensus 263 m~ea~~e--~difVTtTGc~dii~~~H~~~mk---~d~IvCN~Ghfd--~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr 335 (434)
T KOG1370|consen 263 LEEAIRE--VDIFVTTTGCKDIITGEHFDQMK---NDAIVCNIGHFD--TEIDVKWLNTPALTWENVKPQVDRYILPNGK 335 (434)
T ss_pred HHHhhhc--CCEEEEccCCcchhhHHHHHhCc---CCcEEecccccc--ceeehhhccCCcceeeecccccceeeccCCc
Confidence 9999998 89999999999999999999997 556665432211 2222 22 668899999
Q ss_pred EEE
Q 009138 519 AIF 521 (542)
Q Consensus 519 aIf 521 (542)
.|+
T Consensus 336 ~iI 338 (434)
T KOG1370|consen 336 HII 338 (434)
T ss_pred EEE
Confidence 876
No 342
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=58.69 E-value=61 Score=30.48 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSN 499 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSN 499 (542)
+-|++|++|..| -|+++++.+. +...-|+|. ++|
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~-IT~ 136 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEAAKERGMKTIA-LTG 136 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEE-EeC
Confidence 369999999877 7999999985 333446555 544
No 343
>PRK06753 hypothetical protein; Provisional
Probab=58.44 E-value=12 Score=38.59 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~ 404 (542)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999988865
No 344
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=58.32 E-value=11 Score=41.17 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=20.9
Q ss_pred CCCCC--ceEEEeCcchHHHHHHHHHHH
Q 009138 379 GSLAD--QRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 379 ~~L~d--~riv~~GAGsAg~GIA~ll~~ 404 (542)
+++++ -.|+|+|||.||...|..+..
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHh
Confidence 34554 468999999999999988865
No 345
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=58.29 E-value=51 Score=33.45 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||.|+|+|..|..+|..|... |. +++++|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g~-------~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----GH-------TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 799999999999999998653 42 57888864
No 346
>PRK08507 prephenate dehydrogenase; Validated
Probab=58.28 E-value=33 Score=34.58 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||.|+|+|..|..+|..+... |. ..++|.+|++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-----g~-----~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-----GL-----ISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-----CC-----CCEEEEEcCC
Confidence 799999999999999988653 54 2368888864
No 347
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=57.99 E-value=13 Score=40.60 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+.+++|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 45799999999999999988865 353 58888865
No 348
>PLN02427 UDP-apiose/xylose synthase
Probab=57.90 E-value=36 Score=35.60 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=51.9
Q ss_pred HHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCch-------hchhh
Q 009138 374 MKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-------FKKPW 445 (542)
Q Consensus 374 lr~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~-------~k~~f 445 (542)
+.+.||+++-.||+|.|| |-.|.-+++.|+.. .| .+++.+|+.. .+...+.+ .+.+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 457799999999999996 99999888888652 12 3677777531 11011110 01122
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 009138 446 AH-EHEPVKELVDAVNAIKPTILIGTSGQG 474 (542)
Q Consensus 446 A~-~~~~~~~L~eaV~~vkPtvLIG~S~~~ 474 (542)
.+ +......+.+++++ +|++|=+.+..
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~~ 97 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAIC 97 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEccccc
Confidence 22 11223457788876 89999877643
No 349
>PRK07589 ornithine cyclodeaminase; Validated
Probab=57.81 E-value=1e+02 Score=33.13 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=64.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcccc---CCCCCHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAV 459 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~---~~~~~L~eaV 459 (542)
-.++.|+|+|.-+..-++.++... .+ ++|++.|+. ..+ ...+.+.+.+.. ....+++|++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 478999999998887777776531 22 678877663 222 223333332211 1236899999
Q ss_pred hccCCcEEEEccCCC---CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 009138 460 NAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (542)
Q Consensus 460 ~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIFaL-SNPt~~aEct~ed 510 (542)
+. +||++-++... -+|..++++. .--|-++ |+--.+-|+.++-
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 98 99999876422 3688888842 2234444 4544578998875
No 350
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=57.78 E-value=14 Score=40.02 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+....+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 4456899999999999999998865 253 57788864
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.73 E-value=16 Score=39.65 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=24.2
Q ss_pred HhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 009138 376 FLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 376 ~~g~~L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
..|..++.++++|+|+|.+|+.+|+.|.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34556778899999999999999988864
No 352
>PRK07045 putative monooxygenase; Reviewed
Probab=57.72 E-value=13 Score=38.82 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~ 405 (542)
-+|+|+|||.||+..|-.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 4799999999999999888653
No 353
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=57.50 E-value=18 Score=39.54 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=37.4
Q ss_pred HHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEE
Q 009138 346 EKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (542)
Q Consensus 346 ~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lv 424 (542)
++|......+.|=..||+ .++++++++|.|| |..|..+|+.+++ .|. ++.++
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La~-----~G~-------~Vi~l 208 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELHQ-----QGA-------KVVAL 208 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEE
Confidence 356667788999888888 2467789999997 4455555555543 353 56777
Q ss_pred ccc
Q 009138 425 DSK 427 (542)
Q Consensus 425 Dsk 427 (542)
|++
T Consensus 209 ~r~ 211 (406)
T PRK07424 209 TSN 211 (406)
T ss_pred eCC
Confidence 654
No 354
>PRK06138 short chain dehydrogenase; Provisional
Probab=57.48 E-value=23 Score=33.80 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G~-------~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EGA-------RVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CCC-------eEEEecCC
Confidence 467789999998 4455555555543 352 67877764
No 355
>PRK06841 short chain dehydrogenase; Provisional
Probab=57.45 E-value=22 Score=34.27 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=24.8
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 477889999997 5566666666643 363 57778765
No 356
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.20 E-value=37 Score=32.60 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.++..+++|.|| |..|..+|+.+++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356778999998 6666666666643 363 57777764
No 357
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=57.19 E-value=12 Score=38.65 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=24.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999987754 354 56777765
No 358
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=57.12 E-value=13 Score=39.63 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
+-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988865 35 4699999864
No 359
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=56.98 E-value=14 Score=40.37 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=28.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
+.-+++|+|||.+|+++|..|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999998764 663 277788764
No 360
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=56.91 E-value=48 Score=33.59 Aligned_cols=86 Identities=12% Similarity=0.295 Sum_probs=51.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
||+|.|| |-.|..+++.|.. .| +++.+|+..- .+.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~--------------~~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHST--------------DYCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEeccccc--------------cccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888887753 13 3566665311 01011122235778888888
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEEcC
Q 009138 464 PTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 464 PtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFaLS 498 (542)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776654221 234555555544 46777544
No 361
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=56.86 E-value=14 Score=35.83 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=41.3
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh---c-hhhccccCCCCC
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---K-KPWAHEHEPVKE 454 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~---k-~~fA~~~~~~~~ 454 (542)
.+.+.+++|.|| |..|..||+.+++ .|. ++.++|++. .+.+.+... + ..+.-+..+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHH
Confidence 477889999997 4455556666544 363 577887642 110111000 0 011112222235
Q ss_pred HHHHHhcc-----CCcEEEEccCC
Q 009138 455 LVDAVNAI-----KPTILIGTSGQ 473 (542)
Q Consensus 455 L~eaV~~v-----kPtvLIG~S~~ 473 (542)
+.++++.+ ++|+||=+.+.
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 66666654 68999977654
No 362
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=56.85 E-value=38 Score=36.35 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||.|+|+|..|..+|..++.. |. +++++|.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G~-------~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----GH-------EVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----CC-------eEEEEECC
Confidence 789999999999999998653 53 57888864
No 363
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=56.81 E-value=15 Score=44.30 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc----ccccC
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIVS 432 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk----GLi~~ 432 (542)
-.+.||+|+|||.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 3579999999999999999998753 64 57788875 55543
No 364
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=56.77 E-value=12 Score=40.31 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
.+|+++=||++|||..|.-+++||+.. |+ .+|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999874 75 68888887644
No 365
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=56.25 E-value=14 Score=38.81 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=30.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc--ccccCCCc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK--GLIVSSRL 435 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk--GLi~~~R~ 435 (542)
...|+|+|||.||+..|-.|.. .|+ ++-++++. .+...+|.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~~~~~~~~~r~ 44 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERAPRELLERGRG 44 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccCccccccCcee
Confidence 4579999999999999988865 475 57788886 44444443
No 366
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=56.13 E-value=10 Score=37.88 Aligned_cols=39 Identities=36% Similarity=0.526 Sum_probs=33.4
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-++|++-|++++|+|.-|..+++.++.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 3578899999999999999999999875 65 569999986
No 367
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=56.01 E-value=13 Score=40.10 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~ 404 (542)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 479999999999999988865
No 368
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=55.99 E-value=12 Score=38.68 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.0
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 009138 386 FLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~ 405 (542)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999998763
No 369
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=55.95 E-value=14 Score=37.54 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi 430 (542)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999988754 35 368888887543
No 370
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=55.91 E-value=13 Score=41.12 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
-.|||+|+|.+|++||..+... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999888663 65 578888763
No 371
>PRK09186 flagellin modification protein A; Provisional
Probab=55.87 E-value=15 Score=35.36 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=22.0
Q ss_pred CCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 381 LADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 381 L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+++.+++|.||+ ..|..+|+.++. .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 467889999984 445556665543 353 56777653
No 372
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=55.75 E-value=15 Score=38.46 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.7
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
..+|+|+|||.||+..|-.|.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 3579999999999999977754
No 373
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=55.72 E-value=38 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=25.3
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 6666667766644 363 57777764
No 374
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=55.63 E-value=17 Score=29.60 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.5
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc
Q 009138 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (542)
Q Consensus 388 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi 430 (542)
|+|||.+|+..|-.|.+. | .+|.++|++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 689999999999988653 4 478899886443
No 375
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=55.61 E-value=12 Score=40.06 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..+..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 3456799999999999998876621 1 1358888764
No 376
>PRK08013 oxidoreductase; Provisional
Probab=55.56 E-value=14 Score=38.83 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=24.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+-.|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 4579999999999999977754 365 45566654
No 377
>PLN02463 lycopene beta cyclase
Probab=55.45 E-value=13 Score=40.77 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=24.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 478999999999999988754 364 46666653
No 378
>PRK06392 homoserine dehydrogenase; Provisional
Probab=55.37 E-value=45 Score=35.41 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=49.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-hhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc---ccCCCC--CHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIALEIS-KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVK--ELVDA 458 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~-~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~---~~~~~~--~L~ea 458 (542)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|.+...+.=++.+....-.+ ...... ++.+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 79999999999999999866210 112321 122456799998888653122221111110 001112 56666
Q ss_pred HhccCCcEEEEccC
Q 009138 459 VNAIKPTILIGTSG 472 (542)
Q Consensus 459 V~~vkPtvLIG~S~ 472 (542)
++ .++||+|=+++
T Consensus 78 l~-~~~DVvVE~t~ 90 (326)
T PRK06392 78 FE-IKPDVIVDVTP 90 (326)
T ss_pred hc-CCCCEEEECCC
Confidence 65 58999999884
No 379
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=55.18 E-value=34 Score=35.13 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-ccCCCCCHHHH
Q 009138 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 458 (542)
Q Consensus 381 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~-~~~~~~~L~ea 458 (542)
+++.+++|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..|.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 77888888877653 31 136888876422100000001111111211 22223467778
Q ss_pred HhccCCcEEEEccCCCCC----C------------CHHHHHHHHcCCCCcEEEEcC
Q 009138 459 VNAIKPTILIGTSGQGRT----F------------TKEVVEAMASLNEKPIIFSLS 498 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g~----F------------teevv~~Ma~~~erPIIFaLS 498 (542)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 875 8999977664321 1 235566666655567888543
No 380
>PRK06182 short chain dehydrogenase; Validated
Probab=55.17 E-value=23 Score=34.71 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=39.4
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh---chhh-ccccCCCCCHH
Q 009138 382 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KKPW-AHEHEPVKELV 456 (542)
Q Consensus 382 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~---k~~f-A~~~~~~~~L~ 456 (542)
+..+++|.|| |-.|..+|+.++. .|. ++++++++- +.+.+. ...+ .-|..+..++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G~-------~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QGY-------TVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 3568999997 4455556555543 353 677776641 112111 1111 11222223556
Q ss_pred HHHhcc-----CCcEEEEccCCC
Q 009138 457 DAVNAI-----KPTILIGTSGQG 474 (542)
Q Consensus 457 eaV~~v-----kPtvLIG~S~~~ 474 (542)
++++.+ ++|+||=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 666644 799999877653
No 381
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=55.07 E-value=13 Score=38.69 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999987754 364 577888753
No 382
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=54.90 E-value=30 Score=39.78 Aligned_cols=83 Identities=16% Similarity=0.266 Sum_probs=46.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
.||.|+|+|..|..+|+.+... |. ..+++.+|.+ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999998653 53 2458888874 111 111110 00000112345666654
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcC
Q 009138 464 PTILIGTSGQGRTFTKEVVEAMASL 488 (542)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~ 488 (542)
+|++| ++..+ ...+++++.|+.+
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~ 86 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPL 86 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHh
Confidence 56665 44333 3456666666543
No 383
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=54.85 E-value=56 Score=32.20 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=51.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 458 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k----~~fA~-~~~~~~~L~ea 458 (542)
||+|.|| |..|..+++.|.+ .| .+++++|+. .....+.+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5778875 8788888777754 24 356667642 111011111110 01111 22223467788
Q ss_pred HhccCCcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEE
Q 009138 459 VNAIKPTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 459 V~~vkPtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFa 496 (542)
++..++|++|=+.+..... +..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999665532111 2355677776555677773
No 384
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=54.84 E-value=15 Score=39.65 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
...+|+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999988754 25 368888875
No 385
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=54.74 E-value=14 Score=39.74 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3689999999999999988653 5 4788999764
No 386
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=54.64 E-value=18 Score=37.12 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=25.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi 430 (542)
+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 45689999999999999988764 54 67888876433
No 387
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=54.59 E-value=3e+02 Score=29.53 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=62.7
Q ss_pred HHHcCCCceee--cC--CcchHHHHHHHHHHHHHHh---CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhcc
Q 009138 346 EKYGTTHLVFN--DD--IQGTASVVLAGLISAMKFL---GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (542)
Q Consensus 346 ~ryr~~~~~FN--DD--iQGTaaVvLAgll~Alr~~---g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr 418 (542)
.+| .++||.| |+ .|=|= +||=++.-.+.. |++|++.||+++|.+.=+ -++.-++..+....|+
T Consensus 118 a~~-~~vPVINa~~g~~~HPtQ--aLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~-rv~~Sl~~~l~~~~g~------ 187 (338)
T PRK08192 118 AEG-SRVPVINGGDGSNEHPTQ--ALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFG-RTVHSLSRLLCMYKNV------ 187 (338)
T ss_pred HHh-CCCCEEECCCCCCCCcHH--HHHHHHHHHHHhhccCCCcCCCEEEEECcCCCC-chHHHHHHHHHHhcCC------
Confidence 444 4699999 32 35443 455555544433 568999999999997311 1233333322222354
Q ss_pred CeEEEEcccccccCCCccCCchhchhhcccc----CCCCCHHHHHhccCCcEEEEccCCC
Q 009138 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKELVDAVNAIKPTILIGTSGQG 474 (542)
Q Consensus 419 ~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~----~~~~~L~eaV~~vkPtvLIG~S~~~ 474 (542)
+++++-.+|+-- ++.-...++.. ....++.||+++ +||+.-.+.+.
T Consensus 188 -~v~~~~P~~~~~-------~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~~q~ 237 (338)
T PRK08192 188 -SFTLVSPKELAM-------PDYVISDIENAGHKITITDQLEGNLDK--ADILYLTRIQE 237 (338)
T ss_pred -EEEEECCccccC-------CHHHHHHHHHcCCeEEEEcCHHHHHcc--CCEEEEcCccc
Confidence 688888877621 11111122211 123689999998 99999976553
No 388
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=54.57 E-value=90 Score=32.77 Aligned_cols=113 Identities=19% Similarity=0.311 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccC
Q 009138 341 AFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (542)
Q Consensus 341 Af~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~ 419 (542)
+.+.+.+| .++||+|= |-..=-+=+|+=++.-.+..| .|++.||+++|-.. .+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 44445554 46899994 222223456777776666666 49999999999863 478888777765 564
Q ss_pred eEEEEcccccccCCCccCCchhchhhccc-c---CCCCCHHHHHhccCCcEEEEcc
Q 009138 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVDAVNAIKPTILIGTS 471 (542)
Q Consensus 420 ~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~---~~~~~L~eaV~~vkPtvLIG~S 471 (542)
++.++-.+++.-+. ...+.-+.+++. . ....++.|++++ .||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 111122233332 1 123689999998 99998764
No 389
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=54.44 E-value=14 Score=37.84 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=23.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999987765 364 466666663
No 390
>PLN02676 polyamine oxidase
Probab=54.34 E-value=34 Score=37.88 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~ 405 (542)
...+++|+|||.+|++.|..|.+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc
Confidence 355799999999999999998763
No 391
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.31 E-value=18 Score=40.44 Aligned_cols=104 Identities=22% Similarity=0.343 Sum_probs=64.9
Q ss_pred CCCCccccchhhhhhHhhhCCCCCCCeeeEEe-ecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCc
Q 009138 251 LGCHGMGIPVGKLSLYTALGGIRPSACLPVTI-DVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI 329 (542)
Q Consensus 251 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~L-DvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~ 329 (542)
.|+-|. ||+++-.|.|+-==-...-+.| .|+.| .+ +...+ ..+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL---~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLL---LATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHH---HhCC-CCc
Confidence 466664 7999999999865222555556 55533 21 22232 2333 788
Q ss_pred eeeeecCCCccHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 009138 330 LIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391 (542)
Q Consensus 330 lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GA 391 (542)
+|-+|||.. +|.+=++-..+-.-|++ .-.-|+|.||||++--.--.=.|.||+|+=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 999999964 34444443333333333 4567999999999765444555788888754
No 392
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=54.21 E-value=22 Score=30.53 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=51.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccCC
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 464 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vkP 464 (542)
||.|+|+|..|......+.... .+. +=..++|.+. +......+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 7999999999777755554320 111 2234566531 112222223322 245789999998789
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 465 TILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 465 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
|+++ +++.. ....++++...+.. .+|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g-~~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAG-KHVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTT-SEEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcC-CEEEE
Confidence 9888 44434 45666666655433 24443
No 393
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=54.21 E-value=41 Score=37.86 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=63.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-ccC---CCCCHHHHHh
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHE---PVKELVDAVN 460 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~-~~~---~~~~L~eaV~ 460 (542)
+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ .+++...++. ... ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 699999999999999999763 64 57777763 222 2222222222 111 3468999997
Q ss_pred cc-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 009138 461 AI-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (542)
Q Consensus 461 ~v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 501 (542)
.+ +|+++| ++-..+.-.++|+..+.. ..+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 64 588888 554455666777655443 34677999999854
No 394
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=54.06 E-value=19 Score=38.18 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccccc
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~ 431 (542)
|+|+|||.||+.+|-.|.+. ..| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCCC
Confidence 78999999999999877653 124 3577787765433
No 395
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=54.05 E-value=14 Score=38.37 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999977754 364 57777765
No 396
>PRK07588 hypothetical protein; Provisional
Probab=53.97 E-value=15 Score=38.22 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~ 404 (542)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988865
No 397
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=53.89 E-value=1e+02 Score=33.02 Aligned_cols=114 Identities=13% Similarity=0.244 Sum_probs=72.6
Q ss_pred cHHHHHHHHcCCCceeec---CCcchHHHHHHHHHHHHHHhC-CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChh
Q 009138 340 NAFDLLEKYGTTHLVFND---DIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLE 415 (542)
Q Consensus 340 nAf~lL~ryr~~~~~FND---DiQGTaaVvLAgll~Alr~~g-~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~e 415 (542)
.+.+.+.+| .++||.|- ..|= +=+||=++.-.+..| +.|++.+|+++|-+.- .+++-++.++.+ .|+
T Consensus 112 ~~~~~~a~~-~~vPVINa~~~~~HP--tQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~--~v~~S~~~~~~~-~G~--- 182 (334)
T PRK12562 112 EVVETLAEY-AGVPVWNGLTNEFHP--TQLLADLLTMQEHLPGKAFNEMTLVYAGDARN--NMGNSMLEAAAL-TGL--- 182 (334)
T ss_pred HHHHHHHHh-CCCCEEECCCCCCCh--HHHHHHHHHHHHHhCCCCcCCcEEEEECCCCC--CHHHHHHHHHHH-cCC---
Confidence 344455555 47899993 3333 346777777766666 4699999999998742 367777666655 575
Q ss_pred hccCeEEEEcccccccCCCccCCchhchhhccc-cCC---CCCHHHHHhccCCcEEEEcc
Q 009138 416 ETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP---VKELVDAVNAIKPTILIGTS 471 (542)
Q Consensus 416 eAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~---~~~L~eaV~~vkPtvLIG~S 471 (542)
++.++-.+|+.-.. + .-+.-+.+++. ... ..++.||+++ +||+.-.+
T Consensus 183 ----~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~ 233 (334)
T PRK12562 183 ----DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFIYTDV 233 (334)
T ss_pred ----EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 1 11111233332 111 2689999998 99999875
No 398
>PLN02852 ferredoxin-NADP+ reductase
Probab=53.85 E-value=13 Score=41.56 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..+-...||+|+|||.||+..|..|.+.. .| -+|.++|+.
T Consensus 21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 21 SSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 34445679999999999999999987531 24 368888876
No 399
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=53.77 E-value=2.5e+02 Score=28.39 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEeC
Q 009138 477 FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 524 (542)
Q Consensus 477 Fteevv~~Ma~~~erPIIFaLSNPt~~aEct~edA~~wt~GraIfASG 524 (542)
.++|.++..++..+.|+++-++.... +.++++.-++ |-.++.-|
T Consensus 183 ~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~~ 226 (243)
T cd00377 183 KDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSYG 226 (243)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEEC
Confidence 37888888888888999887554432 6889988887 54444433
No 400
>PRK08244 hypothetical protein; Provisional
Probab=53.67 E-value=15 Score=39.86 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~ 404 (542)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 569999999999999988865
No 401
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=53.67 E-value=17 Score=37.32 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
...|+|+|||.+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999887653 5 3688898764
No 402
>PRK06185 hypothetical protein; Provisional
Probab=53.64 E-value=15 Score=38.31 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=25.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999977754 365 466777653
No 403
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=53.46 E-value=27 Score=36.50 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=65.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~vk 463 (542)
+||.++|.|+.|-.|++.|... +. +..+-.++.|+.- ++ .+.++...+.+.+|.|.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987442 11 0112344555531 11 1223332345678888653 36
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEE-E---EcCCCCCCCCCCHHHHhcccCCcEEEEeCC
Q 009138 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPII-F---SLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (542)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPII-F---aLSNPt~~aEct~edA~~wt~GraIfASGs 525 (542)
||+++=+.++. ++.+-..+.+.+ .+.+| + ||+++. =+-.-.++-+-..++..++||-
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~--g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA--GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc--CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeChH
Confidence 99999988864 455444444442 23333 2 244443 1222223333356788888873
No 404
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=53.09 E-value=1e+02 Score=33.05 Aligned_cols=114 Identities=21% Similarity=0.353 Sum_probs=70.0
Q ss_pred ccHHHHHHHHcCCCceee---cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChh
Q 009138 339 HNAFDLLEKYGTTHLVFN---DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLE 415 (542)
Q Consensus 339 ~nAf~lL~ryr~~~~~FN---DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~e 415 (542)
+.+.+.+.+| .++||.| |+.|=| =+||=++.-.+.. +.|++.||+++|.+.- ++++-++.++.+ .|+
T Consensus 112 ~~~~~~~a~~-~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-g~l~g~~va~vGd~~~--~v~~Sl~~~~~~-~g~--- 181 (331)
T PRK02102 112 QEIVEELAKY-SGVPVWNGLTDEWHPT--QMLADFMTMKEHF-GPLKGLKLAYVGDGRN--NMANSLMVGGAK-LGM--- 181 (331)
T ss_pred hHHHHHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHh-CCCCCCEEEEECCCcc--cHHHHHHHHHHH-cCC---
Confidence 3344444555 4689998 333433 4566666544444 4699999999999853 478887777655 564
Q ss_pred hccCeEEEEcccccccCCCccCCchhchhhccc-cCC---CCCHHHHHhccCCcEEEEcc
Q 009138 416 ETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP---VKELVDAVNAIKPTILIGTS 471 (542)
Q Consensus 416 eAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~---~~~L~eaV~~vkPtvLIG~S 471 (542)
++.++-.+|+.-.. + .-+.-+.+++. ... ..+++||+++ +||+.-.+
T Consensus 182 ----~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~ 232 (331)
T PRK02102 182 ----DVRICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYTDV 232 (331)
T ss_pred ----EEEEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888777763321 1 11111223322 111 2689999998 99998764
No 405
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=53.06 E-value=14 Score=42.18 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=30.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc-cccCCCc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRL 435 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG-Li~~~R~ 435 (542)
++..|+|+|||.||+..|-.|.+. .|+ ++.++|++- ....+|.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA 74 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQA 74 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCee
Confidence 457899999999999999888652 265 466777663 3333443
No 406
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=53.03 E-value=76 Score=32.85 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=24.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-.+++|+|+|+|+.|...+.+.. + .|. ++++.+|+.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak-~----~G~------~~vi~~~~~ 221 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGAR-I----RGA------SRIIGVDLN 221 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEcCC
Confidence 45789999999988776555443 2 363 467777653
No 407
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=52.96 E-value=15 Score=40.34 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+.|++-+|+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999999875 76 689999986
No 408
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.76 E-value=25 Score=38.53 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=56.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchh---chhhcc-ccCCCCCHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KKPWAH-EHEPVKELVDAV 459 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~---k~~fA~-~~~~~~~L~eaV 459 (542)
.+||++|||-.|..||..|++- |- .+|.+.|+. .+-.+.+... +...+. +..+...|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999999763 31 579988874 1111111111 222222 344556899999
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHc
Q 009138 460 NAIKPTILIGTSGQGRTFTKEVVEAMAS 487 (542)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~ 487 (542)
++ .|++|-+- ++-++..++++-.+
T Consensus 67 ~~--~d~VIn~~--p~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAA--PPFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeC--CchhhHHHHHHHHH
Confidence 98 59988765 44688888887664
No 409
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=52.60 E-value=58 Score=34.05 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--CCCCcEEEEcCCCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPT 501 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSNPt 501 (542)
+-|++||+|..| =|+++++++.. ...-|+|.=-+||.
T Consensus 131 ~~DvvI~IS~SG--~T~~vi~al~~Ak~~Ga~tI~IT~~~~ 169 (299)
T PRK05441 131 AKDVVVGIAASG--RTPYVIGALEYARERGALTIGISCNPG 169 (299)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 479999999877 58999998853 33346666556666
No 410
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=52.59 E-value=17 Score=37.32 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988765 25 35788888654
No 411
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=52.58 E-value=21 Score=37.39 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGL 429 (542)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 355799999999999999888663 242 47889988643
No 412
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=52.49 E-value=32 Score=37.08 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-cCCCCCHHH
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVD 457 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~~~~~~L~e 457 (542)
..|++.+|.|+|-|+-|.++|+.+... |+ ++++.|+.+ +. .+ .|.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~-----~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FE-----VAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hH-----HHHHcCCEECCHHH
Confidence 357889999999999999999998653 65 466665432 11 11 1111 111247999
Q ss_pred HHhccCCcEEE
Q 009138 458 AVNAIKPTILI 468 (542)
Q Consensus 458 aV~~vkPtvLI 468 (542)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 9987 88877
No 413
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=52.46 E-value=14 Score=38.75 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=24.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 68999999999999988754 364 56677764
No 414
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=52.34 E-value=20 Score=41.60 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=28.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-.+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4578999999999999999998663 53 68888874
No 415
>PRK00536 speE spermidine synthase; Provisional
Probab=52.23 E-value=23 Score=36.60 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCC-CCHHHHHhcc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV-KELVDAVNAI 462 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~-~~L~eaV~~v 462 (542)
.||+|+|+|-.| +|+-+++. + +++.|||-++-|++--++.++....-|..+.-.. .-+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999985 45555443 1 3899999999877654444666555443221111 1222211 13
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMA 486 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma 486 (542)
+-||+|-=| +|+++-.+.+.
T Consensus 139 ~fDVIIvDs----~~~~~fy~~~~ 158 (262)
T PRK00536 139 KYDLIICLQ----EPDIHKIDGLK 158 (262)
T ss_pred cCCEEEEcC----CCChHHHHHHH
Confidence 689998655 36666655543
No 416
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=52.09 E-value=12 Score=32.13 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=51.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-ccCCCCCHHHHHhccCC
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAIKP 464 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~-~~~~~~~L~eaV~~vkP 464 (542)
|||+|.|..|..+++.|... + .++.++|.+--... .+.....++-. +......|.++ .--++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a-~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERA-GIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHT-TGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhc-Ccccc
Confidence 78999999999999988652 2 47898988621111 11111111111 11122344443 44468
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCC-CcEEEEcCCCC
Q 009138 465 TILIGTSGQGRTFTKEVVEAMASLNE-KPIIFSLSNPT 501 (542)
Q Consensus 465 tvLIG~S~~~g~Fteevv~~Ma~~~e-rPIIFaLSNPt 501 (542)
+.+|-++... .-+-.++....+.++ .+||.-+.||.
T Consensus 64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 64 DAVVILTDDD-EENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 8888776533 233333333334345 56666565554
No 417
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=52.00 E-value=1e+02 Score=32.93 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=69.7
Q ss_pred HHHHHHcCCCceee---cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccC
Q 009138 343 DLLEKYGTTHLVFN---DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (542)
Q Consensus 343 ~lL~ryr~~~~~FN---DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~ 419 (542)
+.+.+| .++||+| |..|=| =+|+=++.-.+...+++++.||+++|-+. + .+|+-++.++.+ .|+
T Consensus 115 ~~~a~~-s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~~g~l~g~kia~vGD~~-~-~v~~Sl~~~~~~-~g~------- 181 (332)
T PRK04284 115 ETLAEY-SGVPVWNGLTDEDHPT--QVLADFLTAKEHLKKPYKDIKFTYVGDGR-N-NVANALMQGAAI-MGM------- 181 (332)
T ss_pred HHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHhcCCcCCcEEEEecCCC-c-chHHHHHHHHHH-cCC-------
Confidence 333444 4799999 333433 45677666655523479999999999883 2 477777776655 475
Q ss_pred eEEEEcccccccCCCccCCchhchhhccc-c---CCCCCHHHHHhccCCcEEEEcc
Q 009138 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVDAVNAIKPTILIGTS 471 (542)
Q Consensus 420 ~i~lvDskGLi~~~R~~~l~~~k~~fA~~-~---~~~~~L~eaV~~vkPtvLIG~S 471 (542)
+|.++=.+|+.-.+ +-+... +.+|+. . ....++.||+++ +||+.-.+
T Consensus 182 ~v~~~~P~~~~~~~--~~~~~~-~~~~~~~g~~~~~~~d~~ea~~~--aDvvy~~~ 232 (332)
T PRK04284 182 DFHLVCPKELNPDD--ELLNKC-KEIAAETGGKITITDDIDEGVKG--SDVIYTDV 232 (332)
T ss_pred EEEEECCccccCCH--HHHHHH-HHHHHHcCCeEEEEcCHHHHhCC--CCEEEECC
Confidence 68888887773321 112111 233332 1 123689999998 99999864
No 418
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=51.97 E-value=18 Score=37.99 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=25.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
...|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 4579999999999999977654 365 46677764
No 419
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=51.96 E-value=18 Score=37.94 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.1
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
..+|+|+|||.||+..|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4679999999999999988765
No 420
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=51.95 E-value=57 Score=33.01 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+|.|+|+|..|..+|+.+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999965 253 56777764
No 421
>PRK10262 thioredoxin reductase; Provisional
Probab=51.91 E-value=15 Score=37.44 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
-+..+|||+|||.||+..|..+.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988865
No 422
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=51.84 E-value=35 Score=37.08 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchh-----
Q 009138 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP----- 444 (542)
Q Consensus 370 ll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~----- 444 (542)
+..++.-....|+..|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... +.....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 456666667889999999998776555666544 3358732 211 1000000 001111110
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccC
Q 009138 445 WAHEHEPVKELVDAVNAIKPTILIGTSG 472 (542)
Q Consensus 445 fA~~~~~~~~L~eaV~~vkPtvLIG~S~ 472 (542)
..-+..+...+++.++..+||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 1011122347889999999999999764
No 423
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=51.83 E-value=17 Score=40.99 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.||+|+|||.+|+..|+.+.+. |+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------CCeEEecC
No 424
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=51.83 E-value=18 Score=39.10 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=24.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988864 24 356677763
No 425
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=51.72 E-value=62 Score=33.01 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=48.4
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc-cCCCccCCc------hhchhhcc-ccC
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI-VSSRLESLQ------HFKKPWAH-EHE 450 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi-~~~R~~~l~------~~k~~fA~-~~~ 450 (542)
+++..+++|.|| |-.|..+++.|+. .|. +++++|+..-- ...+.+.+. ..+..|.+ +..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 566789999997 8888888888865 253 57777654210 000000110 00111211 222
Q ss_pred CCCCHHHHHhccCCcEEEEccCC
Q 009138 451 PVKELVDAVNAIKPTILIGTSGQ 473 (542)
Q Consensus 451 ~~~~L~eaV~~vkPtvLIG~S~~ 473 (542)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467888988889999988775
No 426
>PRK08219 short chain dehydrogenase; Provisional
Probab=51.69 E-value=64 Score=30.18 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=39.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchh-----hcc-ccCCCCCHH
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-----WAH-EHEPVKELV 456 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~-----fA~-~~~~~~~L~ 456 (542)
.+++|.|| |..|..+++.|++. .+++++|++. +.++..... +-+ +..+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 47889887 55666666665431 3577777641 111111111 111 112224677
Q ss_pred HHHhcc-CCcEEEEccCCC
Q 009138 457 DAVNAI-KPTILIGTSGQG 474 (542)
Q Consensus 457 eaV~~v-kPtvLIG~S~~~ 474 (542)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999888764
No 427
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=51.69 E-value=18 Score=44.11 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-..+||+|+|||.||+..|..|... |. ++.++|++
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 3568999999999999999998653 53 57778764
No 428
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=51.63 E-value=14 Score=38.81 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
++|..-+|+++|+|..|.-+|+-|+.+ |+ ++|.++|.+=
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 568899999999999999999999875 76 6899999863
No 429
>PRK12831 putative oxidoreductase; Provisional
Probab=51.60 E-value=19 Score=39.44 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=27.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 457899999999999999888763 53 57777763
No 430
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=51.54 E-value=29 Score=36.21 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--CCCCcEEEEcCCCCC
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPTS 502 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSNPt~ 502 (542)
+-|++||+|..|. |+++++.+.. ...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4699999999773 8999998853 333477776677763
No 431
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=51.43 E-value=18 Score=40.51 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+-.|||+|+|..|++||..|... |+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999998763 64 68888875
No 432
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.10 E-value=20 Score=39.25 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 009138 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 380 ~L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
.+...||+|+|+|-+|.++|+.+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH
Confidence 3556789999999999999999865
No 433
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=51.07 E-value=24 Score=39.57 Aligned_cols=79 Identities=14% Similarity=0.301 Sum_probs=48.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc---cCCCCCH
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 455 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~---~~~~~~L 455 (542)
..|...|++|+|-+.-.+|+++.+... .|+. +..++.. .....+.+.+.-+.+... .++...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 678889999999999999999999765 4873 2233321 110000011111111110 1223457
Q ss_pred HHHHhccCCcEEEEcc
Q 009138 456 VDAVNAIKPTILIGTS 471 (542)
Q Consensus 456 ~eaV~~vkPtvLIG~S 471 (542)
.+.|+..+||++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 8889999999999965
No 434
>PRK07538 hypothetical protein; Provisional
Probab=51.01 E-value=18 Score=38.31 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~ 404 (542)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999977755
No 435
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=50.78 E-value=19 Score=41.30 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45799999999999999998865 253 57777764
No 436
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=50.76 E-value=44 Score=34.97 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=51.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc-------cccccCCCccCCchhchhhccccCCCCCHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS-------KGLIVSSRLESLQHFKKPWAHEHEPVKELV 456 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs-------kGLi~~~R~~~l~~~k~~fA~~~~~~~~L~ 456 (542)
.||.|+|||+.|.-.|-.|.++ |-. =.+|.-++ +||...+-.. ....... ..+-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-----g~~-----V~~~~R~~~~~~l~~~GL~i~~~~~------~~~~~~~--~~~~~ 62 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-----GHD-----VTLLVRSRRLEALKKKGLRIEDEGG------NFTTPVV--AATDA 62 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-----CCe-----EEEEecHHHHHHHHhCCeEEecCCC------ccccccc--cccCh
Confidence 4899999999999988888764 410 12444444 3666554321 0011100 00111
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCC-cEEEEcCCCCCCCC
Q 009138 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEK-PIIFSLSNPTSQSE 505 (542)
Q Consensus 457 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~er-PIIFaLSNPt~~aE 505 (542)
+... ++|++| ++... -.++++++.+..+... .+|..|-|=-..-|
T Consensus 63 ~~~~--~~Dlvi-v~vKa-~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 63 EALG--PADLVI-VTVKA-YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred hhcC--CCCEEE-EEecc-ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 1111 356554 33322 4677777777654433 35666667554444
No 437
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=50.71 E-value=96 Score=38.88 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCc-------cHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEE
Q 009138 315 HEFMTAVKQNYGERILIQFEDFANH-------NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFL 387 (542)
Q Consensus 315 defv~av~~~fGp~~lIqfEDf~~~-------nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv 387 (542)
-+.+++.-+.|+++.+|| |++.. +-+++..+|.-.+++.+=|-+|.+-- .+
T Consensus 441 ~~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e---- 498 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RE---- 498 (1229)
T ss_pred HHHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HH----
Confidence 346666667776777876 55442 46778899999988888887776533 11
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhcc-----
Q 009138 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI----- 462 (542)
Q Consensus 388 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~v----- 462 (542)
-=+.||+.+...+..+.|++. ++|+ +|--=+ +-+ .+ . +....+|. ...|+|+.+
T Consensus 499 ------~r~~ia~r~~~~~~~~~Gi~~----~dIi-~Dplv~-~v~-t~-~-ee~~~~~~------~~leair~ik~~~P 557 (1229)
T PRK09490 499 ------RKIEICKRAYDILTEEVGFPP----EDII-FDPNIF-AVA-TG-I-EEHNNYAV------DFIEATRWIKQNLP 557 (1229)
T ss_pred ------HHHHHHHHHHHHHHHHcCCCH----HHEE-EcCCcc-eee-cC-h-HHHHHHHH------HHHHHHHHHHHHCC
Confidence 124688888887765579975 3454 776311 111 11 1 11223333 234555533
Q ss_pred CCcEEEEccCCCCCC
Q 009138 463 KPTILIGTSGQGRTF 477 (542)
Q Consensus 463 kPtvLIG~S~~~g~F 477 (542)
...+.+|+|...=-|
T Consensus 558 ~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 558 HAKISGGVSNVSFSF 572 (1229)
T ss_pred CCcEEEeeccccccC
Confidence 245899999876445
No 438
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=50.69 E-value=17 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..|||+|+|.+|+++|..+... |+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 5799999999999999999763 64 58888876
No 439
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=50.52 E-value=43 Score=39.89 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=66.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH---HHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc--cCCCCCHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELV 456 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~---~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~--~~~~~~L~ 456 (542)
...+|.++|-|..|.|++++|.+. +.++.|+.. +=.-++|+++.+.+.+.-++......|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999763 333345422 113357999988877642222233333321 12334577
Q ss_pred HHHhccCCc--EEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 457 DAVNAIKPT--ILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 457 eaV~~vkPt--vLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
|.+....++ |+|=+++.. -....+.+++. +.+.+|-
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVt 570 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVIS 570 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEc
Confidence 778766665 899888633 35566777787 3566665
No 440
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=50.35 E-value=11 Score=40.40 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=30.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh---cCCChhhccC----eEEEEcccccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQ---TNMPLEETRK----KIWLVDSKGLI 430 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~---~G~s~eeAr~----~i~lvDskGLi 430 (542)
++|+|+|||-||+..|..|.+..... ..+..=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999997642100 1255666665 45554444543
No 441
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.33 E-value=11 Score=44.84 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=81.3
Q ss_pred HHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 347 KYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 347 ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
||-.++.||.++-| ++|.++++.++|||+.|+-.-+-+++. |+.--+- ..|.+.|-
T Consensus 412 RYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTDm 467 (1013)
T KOG2012|consen 412 RYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTDM 467 (1013)
T ss_pred ccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEecc
Confidence 67777777766544 689999999999999998777766543 5532221 35776666
Q ss_pred cccccCCCccCCchhchhhcccc-CC-CCCHHHHHhccCCcEEEE-------ccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009138 427 KGLIVSSRLESLQHFKKPWAHEH-EP-VKELVDAVNAIKPTILIG-------TSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (542)
Q Consensus 427 kGLi~~~R~~~l~~~k~~fA~~~-~~-~~~L~eaV~~vkPtvLIG-------~S~~~g~Fteevv~~Ma~~~erPIIFaL 497 (542)
+ +|.++ +|+..-.---++- .. ...-.+|+....|++.|= --+ -++|+.+--+.+. =++=||
T Consensus 468 D-~IEkS---NLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~VanAL 537 (1013)
T KOG2012|consen 468 D-HIEKS---NLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVANAL 537 (1013)
T ss_pred c-hhhhc---cccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHHhh
Confidence 5 33433 2442211111121 11 135678999999999863 233 2478877776653 233345
Q ss_pred CCCCCCCCCCHHHHhcccCCcEEE
Q 009138 498 SNPTSQSECTAEEAYTWSQGRAIF 521 (542)
Q Consensus 498 SNPt~~aEct~edA~~wt~GraIf 521 (542)
=|= ||..|-|.||+|
T Consensus 538 DNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 538 DNV---------DARRYVDRRCVY 552 (1013)
T ss_pred cch---------hhhhhhhhhhhh
Confidence 553 577888888887
No 442
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=50.20 E-value=20 Score=39.67 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
||+++|||..|+-+++.|+.. |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652211 2689999986
No 443
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=49.95 E-value=16 Score=37.93 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.2
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~ 405 (542)
.|+|+|||.||+..|-.|.++
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999888653
No 444
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=49.91 E-value=48 Score=36.75 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCC-ceeeeecCCCccHHHHHHHHcCCCceeecCCcchHHHHHH----HHHHHHHHhCCCCCCceEEEeC
Q 009138 316 EFMTAVKQNYGER-ILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLA----GLISAMKFLGGSLADQRFLFLG 390 (542)
Q Consensus 316 efv~av~~~fGp~-~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLA----gll~Alr~~g~~L~d~riv~~G 390 (542)
...+.++++||-- ..+.| ++-.+.-+.|++... .|.+++.-.+--+++ -+-..+......|+..|++++|
T Consensus 268 ~~A~~Le~~fGiP~~~~~~--~Gi~~T~~~Lr~ia~---~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~ 342 (466)
T TIGR01282 268 YISRHMEEKYGIPWMEYNF--FGPTKIAESLRKIAE---FFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYV 342 (466)
T ss_pred HHHHHHHHHhCCceEeCCC--CCHHHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 3445566777632 22233 555555555554432 234343322211111 1333344456788999999998
Q ss_pred cchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-----ccCCCCCHHHHHhccCCc
Q 009138 391 AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-----EHEPVKELVDAVNAIKPT 465 (542)
Q Consensus 391 AGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~-----~~~~~~~L~eaV~~vkPt 465 (542)
.|.-...++.++ ++.|+.. .++-. .....++.....+.... +..+...|++.++..|||
T Consensus 343 g~~~~~~~~~~l-----~ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~~~~pD 406 (466)
T TIGR01282 343 GGLRPRHVIGAF-----EDLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVEKLKPD 406 (466)
T ss_pred CCCcHHHHHHHH-----HHCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHhCCC
Confidence 877666666653 2368732 11110 00001111111111111 112224688999999999
Q ss_pred EEEEccC
Q 009138 466 ILIGTSG 472 (542)
Q Consensus 466 vLIG~S~ 472 (542)
++||-|-
T Consensus 407 l~ig~~~ 413 (466)
T TIGR01282 407 LVGSGIK 413 (466)
T ss_pred EEEecCC
Confidence 9999764
No 445
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=49.89 E-value=1.4e+02 Score=29.37 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=28.8
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009138 454 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 454 ~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (542)
++.+.++. .|++|..|... .|.--++++|+. ..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a~--G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMAC--ELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHHc--CCCEEE
Confidence 45666776 89999888754 478889999994 789985
No 446
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=49.80 E-value=21 Score=40.77 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999999865 363 688999874
No 447
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=49.77 E-value=22 Score=36.97 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..++|||+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999988864 25 367888875
No 448
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=49.76 E-value=20 Score=37.16 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999977654 364 577788763
No 449
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=49.74 E-value=19 Score=38.80 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999988865 35 478889875
No 450
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=49.72 E-value=43 Score=33.97 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=28.5
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHH-HHc----CCCCcEEE
Q 009138 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEA-MAS----LNEKPIIF 495 (542)
Q Consensus 451 ~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~-Ma~----~~erPIIF 495 (542)
-..+++|.++.-++|+++ +.++. .+..|++.+ +.+ .||+||-.
T Consensus 55 ~~~~~~~ll~~~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 55 AYTDLEELLADPDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred ccCCHHHHhcCCCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 357899999997778887 44433 566666644 432 56788644
No 451
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=49.41 E-value=17 Score=40.01 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+||||+|+|-+|+..|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999999986642 1 1368888875
No 452
>PLN02568 polyamine oxidase
Probab=49.33 E-value=12 Score=42.16 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~ 405 (542)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 456899999999999999999764
No 453
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=49.32 E-value=21 Score=37.37 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+|+|+|||-+|+.+|..+... | .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 689999999999999888652 4 368888875
No 454
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=49.31 E-value=19 Score=43.81 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 4799999999999999998865 353 57788765
No 455
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=49.24 E-value=22 Score=39.18 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=26.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
...+++|+|||.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 34799999999999999988865 253 57888764
No 456
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=49.14 E-value=77 Score=30.55 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=25.0
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..++++.+++|.||+. ||...++..+.+ .|. +++++|+.
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568889999999732 234444444433 363 68888885
No 457
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=49.05 E-value=1.8e+02 Score=34.11 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
.||.|+|||..|.|||-.++.. .|+ .++++|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~----~G~-------~V~l~d~ 341 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK----AGL-------PVRIKDI 341 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH----cCC-------eEEEEeC
Confidence 6899999999999999988722 354 4666765
No 458
>PRK11445 putative oxidoreductase; Provisional
Probab=48.94 E-value=20 Score=37.25 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009138 385 RFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~ 404 (542)
.|+|+|||.||...|..|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999988765
No 459
>PRK07478 short chain dehydrogenase; Provisional
Probab=48.88 E-value=53 Score=31.70 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++++.+++|.||+ ..|..+|+.+++ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAR-----EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4677899999975 345555555543 363 58888764
No 460
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=48.79 E-value=21 Score=38.32 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
.+||+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888653 5 47889997
No 461
>PRK06545 prephenate dehydrogenase; Validated
Probab=48.74 E-value=50 Score=35.00 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIALE 405 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~ 405 (542)
.+|.|+|+|..|..+|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998653
No 462
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=48.54 E-value=20 Score=37.64 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887631 13 478888876
No 463
>PRK10015 oxidoreductase; Provisional
Probab=48.48 E-value=20 Score=38.79 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-.++|+|||.||...|-.+++ .|+ ++.++|+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~ 37 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERG 37 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999988765 364 46677764
No 464
>PRK06834 hypothetical protein; Provisional
Probab=48.46 E-value=22 Score=39.15 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=27.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
.+..|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988865 365 466777653
No 465
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=48.45 E-value=23 Score=38.03 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999888653 5 478889873
No 466
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=48.44 E-value=63 Score=34.34 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+++-++|||..|-|||..++.+ |+ .+++.|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~-----G~-------~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALA-----GY-------DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhc-----CC-------ceEEEeCC
Confidence 5889999999999999999774 54 46666665
No 467
>PRK14694 putative mercuric reductase; Provisional
Probab=48.43 E-value=23 Score=38.42 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999988763 5 468888874
No 468
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=48.21 E-value=20 Score=38.72 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999988866 35 468899975
No 469
>PRK05868 hypothetical protein; Validated
Probab=48.14 E-value=22 Score=37.42 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.8
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~ 404 (542)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999977754
No 470
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=48.05 E-value=23 Score=38.47 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34699999999999999888653 5 478999975
No 471
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=48.04 E-value=21 Score=39.51 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.1
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 009138 383 DQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~ 404 (542)
..+|+|+|||.+|+..|-.|.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 3579999999999999988765
No 472
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=47.97 E-value=29 Score=35.60 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHH--hhcCCChhhccCeEEEEccccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEIS--KQTNMPLEETRKKIWLVDSKGL 429 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~--~~~G~s~eeAr~~i~lvDskGL 429 (542)
+..||+++|+|.-|.-+++.|+.... +.-|.+ .--+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCCEE
Confidence 46799999999999999999987521 001210 0028999998743
No 473
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=47.93 E-value=10 Score=42.52 Aligned_cols=44 Identities=34% Similarity=0.332 Sum_probs=31.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCC--ChhhccCeE-----EEEcccccccC
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNM--PLEETRKKI-----WLVDSKGLIVS 432 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~--s~eeAr~~i-----~lvDskGLi~~ 432 (542)
+||+|+|||-||++.|..|+++ |. +.=||+.++ =..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999885 54 444565542 12566666655
No 474
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=47.86 E-value=20 Score=40.15 Aligned_cols=32 Identities=13% Similarity=0.328 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
.+||+|||.||+..|..+... | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999887652 4 3688888753
No 475
>PLN02342 ornithine carbamoyltransferase
Probab=47.71 E-value=1.4e+02 Score=32.29 Aligned_cols=125 Identities=17% Similarity=0.254 Sum_probs=77.7
Q ss_pred HHhcCCCceeeeecCCCccHHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 009138 322 KQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (542)
Q Consensus 322 ~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ 400 (542)
-.+| .++++ +-.+ .+.+.+.+.+| .++||.|- |-..=-+=+||=++.-.+..| +|++.||+++|-+. -+|+
T Consensus 137 Ls~y-~D~Iv-iR~~-~~~~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~---nva~ 208 (348)
T PLN02342 137 LSRY-NDIIM-ARVF-AHQDVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGN---NIVH 208 (348)
T ss_pred HHHh-CCEEE-EeCC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCc---hhHH
Confidence 3456 45444 2223 23344555555 47899993 222334456777777666666 69999999999874 3888
Q ss_pred HHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccc-----cCCCCCHHHHHhccCCcEEEEcc
Q 009138 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-----HEPVKELVDAVNAIKPTILIGTS 471 (542)
Q Consensus 401 ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~-----~~~~~~L~eaV~~vkPtvLIG~S 471 (542)
-++.++.+ .|+ ++.++-.+|+.-.. + ....|++ -....++.|+|++ +||+.-.+
T Consensus 209 Sli~~~~~-~G~-------~v~~~~P~~~~~~~--~-----~~~~a~~~g~~~~~~~~d~~eav~~--aDVvy~~~ 267 (348)
T PLN02342 209 SWLLLAAV-LPF-------HFVCACPKGYEPDA--K-----TVEKARAAGISKIEITNDPAEAVKG--ADVVYTDV 267 (348)
T ss_pred HHHHHHHH-cCC-------EEEEECCcccccCH--H-----HHHHHHHhCCCcEEEEcCHHHHhCC--CCEEEECC
Confidence 88777665 575 58888887763321 1 1111221 1123689999998 99999875
No 476
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=47.63 E-value=23 Score=37.39 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.2
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009138 384 QRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~ 404 (542)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977755
No 477
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=47.47 E-value=24 Score=38.03 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=39.8
Q ss_pred CHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 009138 454 ELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (542)
Q Consensus 454 ~L~eaV~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLSNPt-~~aEct~ed 510 (542)
-+.|.+++ -|++|=+.-.|| +.|+|+|++|. +-.+|.=|+--+ -++|+|--+
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~pg 294 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTEPG 294 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCcccccCC
Confidence 46777876 899998876665 79999999997 678998887644 456766433
No 478
>PRK14852 hypothetical protein; Provisional
Probab=47.46 E-value=18 Score=43.99 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccc
Q 009138 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (542)
Q Consensus 379 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskG 428 (542)
.+|++.||+|+|+|..|.-||..|+.+ |+ .+|.++|-+=
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~ 366 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDA 366 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCE
Confidence 478999999999999999999999874 76 6899999873
No 479
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=47.42 E-value=1.2e+02 Score=30.67 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=53.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhccccCCCCCHHHHHhcc
Q 009138 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (542)
Q Consensus 384 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~~~~~~~~L~eaV~~v 462 (542)
.||.++|+ |-.|-.+++.+... .++ +=..++|++. ++.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99999988777442 222 3355677652 111111 111 1122367888886
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009138 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (542)
++|++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888543 336666665543 5788865
No 480
>PRK09897 hypothetical protein; Provisional
Probab=47.40 E-value=25 Score=39.82 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+|+|+|||.+|+.+|..|+.. + ..-+|.++|..
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12369999984
No 481
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=47.38 E-value=59 Score=31.13 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=85.7
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCceEEEEecC--cceeccCCCCCC--ccccchhhhhhHhhhCCCCCCCeeeE
Q 009138 205 IYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDG--ERILGLGDLGCH--GMGIPVGKLSLYTALGGIRPSACLPV 280 (542)
Q Consensus 205 i~r~p~GlYis~~d~g~i~~il~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPI 280 (542)
+-+++.|+-++.-|.....+.++.+-..++.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 45679999999999988888888888888988887555 111122223332 35666677666666554 445
Q ss_pred EeecCCCccccccCcccccccccccchhhhHHHHHHHHHHHHHhcCCCceee---eecCCCccHHHHHHHHcCCC---ce
Q 009138 281 TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQ---FEDFANHNAFDLLEKYGTTH---LV 354 (542)
Q Consensus 281 ~LDvGTnne~LL~Dp~YlGlr~~R~~G~ey~~~idefv~av~~~fGp~~lIq---fEDf~~~nAf~lL~ryr~~~---~~ 354 (542)
++=.|.. ......+.++-|.+++++ ++.-.++. ..+.....+.+..+++-..+ .+
T Consensus 126 ~~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i 186 (257)
T PF13407_consen 126 LILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANPVDAI 186 (257)
T ss_dssp EEEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEEE
T ss_pred EeccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCCceEE
Confidence 5444421 112233456778788877 64322222 23677777776555553222 23
Q ss_pred eecCCcchHHHHHHHHHHHHHHhCC
Q 009138 355 FNDDIQGTASVVLAGLISAMKFLGG 379 (542)
Q Consensus 355 FNDDiQGTaaVvLAgll~Alr~~g~ 379 (542)
|. +....+-|++.|++..|+
T Consensus 187 ~~-----~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 187 IA-----CNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EE-----SSHHHHHHHHHHHHHTTC
T ss_pred Ee-----CCChHHHHHHHHHHHcCC
Confidence 32 223344477888888887
No 482
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=47.18 E-value=78 Score=33.82 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=58.7
Q ss_pred hCCCCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCC--ccCCch-h-chhhcc-ccC
Q 009138 377 LGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--LESLQH-F-KKPWAH-EHE 450 (542)
Q Consensus 377 ~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R--~~~l~~-~-k~~fA~-~~~ 450 (542)
.++..++++|+|.|| |-.|..+++.|+. .|. +++.++++.--.... ...+.. . ...+.. +..
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 121 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVR-----RGY-------NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVT 121 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEEechhhccccchhhHHhhhcCCceEEEeeCC
Confidence 456678899999997 8888888888865 253 577777643100000 000000 0 011111 222
Q ss_pred CCCCHHHHHhcc--CCcEEEEccCCC-C----CC------CHHHHHHHHcCCCCcEEE
Q 009138 451 PVKELVDAVNAI--KPTILIGTSGQG-R----TF------TKEVVEAMASLNEKPIIF 495 (542)
Q Consensus 451 ~~~~L~eaV~~v--kPtvLIG~S~~~-g----~F------teevv~~Ma~~~erPIIF 495 (542)
+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+
T Consensus 122 d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 122 DADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 234677888765 699998544321 1 11 345677776555455776
No 483
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.16 E-value=21 Score=41.63 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.||.|+|||..|.|||..++.+ |+ +++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-----G~-------~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-----GV-------PVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999998764 64 57777764
No 484
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=47.11 E-value=56 Score=33.24 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=22.0
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 388 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
|+|.|..|.++|+.++.. | .+++++|+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~-----G-------~~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-----G-------HPVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhC-----C-------CeEEEEeCC
Confidence 689999999999999653 5 257777764
No 485
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.98 E-value=24 Score=38.66 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 009138 381 LADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 381 L~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
++++|++|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 486
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=46.94 E-value=25 Score=34.29 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
+|++.+++|.||. -.|..+|+.+++ .|. +++++|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~-----~G~-------~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVA-----EGA-------RVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 3678899999974 355556666644 363 67887764
No 487
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=46.82 E-value=1.8e+02 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcc
Q 009138 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (542)
Q Consensus 378 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDs 426 (542)
..--.+++++|.|+|+.|...+.+.. + .|. +.|..+|+
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~-~----~G~------~~v~~~~~ 216 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCK-A----AGA------SRIIAVDI 216 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEeC
Confidence 33345789999999888777655532 2 364 35666664
No 488
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.80 E-value=23 Score=38.49 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=57.7
Q ss_pred HHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc----
Q 009138 372 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---- 447 (542)
Q Consensus 372 ~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~---- 447 (542)
.++.-....|+..|++|+|-..-.+++++.|.+ .|+.... .+.+. ......+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~~-----~~~~~-------~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPVH-----VLTGN-------GGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEEE-----EEeCC-------CCHHHHHHHHHHHhhcCC
Confidence 334334456788999999988899999999874 3873211 11211 11100110111111
Q ss_pred -------ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009138 448 -------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (542)
Q Consensus 448 -------~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (542)
...+...+++.++..+||++||-|-. +.+|+...-|.| ..+.|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 11223467888899999999997741 334433356754 456664
No 489
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=46.77 E-value=23 Score=36.42 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 385 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888652 5 357788865
No 490
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=46.66 E-value=24 Score=37.79 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 384 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999988663 4 468899975
No 491
>PRK06126 hypothetical protein; Provisional
Probab=46.47 E-value=26 Score=38.68 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=26.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45789999999999999988765 365 46666654
No 492
>PRK07774 short chain dehydrogenase; Provisional
Probab=46.23 E-value=35 Score=32.65 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=24.4
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++++.++||.|| |..|..+|+.+++ .| .+++++|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~-----~g-------~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAR-----EG-------ASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 467788999998 6566666666644 35 368888764
No 493
>CHL00194 ycf39 Ycf39; Provisional
Probab=45.83 E-value=60 Score=33.02 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=55.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccccCCCccCCchhchhhcc-ccCCCCCHHHHHhcc
Q 009138 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAI 462 (542)
Q Consensus 385 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi~~~R~~~l~~~k~~fA~-~~~~~~~L~eaV~~v 462 (542)
||+|.|| |-.|..+++.|++ .|. ++..++++. .+...+.+....+.+ +-....+|.+++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~-----~g~-------~V~~l~R~~----~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g- 64 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD-----EGY-------QVRCLVRNL----RKASFLKEWGAELVYGDLSLPETLPPSFKG- 64 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH-----CCC-------eEEEEEcCh----HHhhhHhhcCCEEEECCCCCHHHHHHHHCC-
Confidence 7899996 9999988888765 353 566666542 110111111222222 22223578899987
Q ss_pred CCcEEEEccCCCC----CC-------CHHHHHHHHcCCCCcEEEE
Q 009138 463 KPTILIGTSGQGR----TF-------TKEVVEAMASLNEKPIIFS 496 (542)
Q Consensus 463 kPtvLIG~S~~~g----~F-------teevv~~Ma~~~erPIIFa 496 (542)
+|++|=+++... .| +..+++++.+..-+-+||.
T Consensus 65 -~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~ 108 (317)
T CHL00194 65 -VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFF 108 (317)
T ss_pred -CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEe
Confidence 799987654221 11 2567787776655667774
No 494
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=45.68 E-value=25 Score=37.96 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=23.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEcccccc
Q 009138 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (542)
Q Consensus 386 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDskGLi 430 (542)
|||+|+|.||+.-|-..+. .|. ++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999998877755 363 78899988765
No 495
>PRK08265 short chain dehydrogenase; Provisional
Probab=45.58 E-value=26 Score=34.28 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
++++++++|.|| |-.|..+|+.++ + .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~----~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALV----A-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 477899999997 334444555443 3 363 68888764
No 496
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=45.56 E-value=27 Score=33.99 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCCceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 380 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 380 ~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.+++.++||.||.+ .|..+|+.++ + .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~----~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFL----A-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 36778999999743 4444555443 3 363 58888864
No 497
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=45.54 E-value=24 Score=38.95 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 009138 382 ADQRFLFLGAGEAGTGIAELIAL 404 (542)
Q Consensus 382 ~d~riv~~GAGsAg~GIA~ll~~ 404 (542)
.+.+|+|+|||.+|+..|..|.+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988865
No 498
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=45.44 E-value=57 Score=31.52 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=24.1
Q ss_pred CCCCCceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 379 GSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 379 ~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
.++++.++||.||+ -.|..+|+.+++ .|. +++++|++
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~-----~G~-------~v~~~~r~ 41 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAA-----EGA-------RVVLVDRS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHH-----CCC-------EEEEEeCc
Confidence 34778899999974 345555555543 363 58888875
No 499
>PRK07190 hypothetical protein; Provisional
Probab=45.33 E-value=26 Score=38.68 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=24.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhccCeEEEEccc
Q 009138 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (542)
Q Consensus 383 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeAr~~i~lvDsk 427 (542)
...|+|+|||.+|+..|-.+.. .|+ ++.++|+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~ 37 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKS 37 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCC
Confidence 3579999999999988876644 365 36667765
No 500
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=45.29 E-value=82 Score=34.24 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHhhcCC
Q 009138 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM 412 (542)
Q Consensus 366 vLAgll~Alr~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~ 412 (542)
.|.-+.-++.. .....|+.++|-+.-..|+++.|.+.| |+
T Consensus 279 ~l~~~~d~l~~---~~~~k~vai~~~~~~~~~l~~~L~~el----Gm 318 (427)
T cd01971 279 YLERFSDFMAR---WGLPRRFAVIADSTYALGLARFLVNEL----GW 318 (427)
T ss_pred HHHHHHHHHHH---hcCCceEEEECChHHHHHHHHHHHHhc----CC
Confidence 34444444442 333589999999999999999997653 76
Done!