Query 009139
Match_columns 542
No_of_seqs 259 out of 1972
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 20:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 1.1E-50 2.3E-55 452.9 37.4 372 147-542 477-856 (977)
2 PRK14099 glycogen synthase; Pr 100.0 3.5E-49 7.5E-54 428.6 35.6 365 150-541 2-368 (485)
3 PRK14098 glycogen synthase; Pr 100.0 7E-49 1.5E-53 426.7 36.0 374 148-542 2-381 (489)
4 TIGR02095 glgA glycogen/starch 100.0 4.7E-46 1E-50 404.2 36.0 363 152-541 1-364 (473)
5 PRK00654 glgA glycogen synthas 100.0 7.8E-46 1.7E-50 401.7 33.5 353 152-541 1-355 (466)
6 COG0297 GlgA Glycogen synthase 100.0 1.3E-44 2.7E-49 386.0 30.4 365 152-542 1-368 (487)
7 cd03791 GT1_Glycogen_synthase_ 100.0 5.2E-43 1.1E-47 380.1 36.3 368 153-541 1-369 (476)
8 PLN02316 synthase/transferase 100.0 1.3E-42 2.8E-47 394.6 40.7 329 148-542 584-919 (1036)
9 PF08323 Glyco_transf_5: Starc 100.0 8.3E-33 1.8E-37 274.9 12.8 240 153-411 1-244 (245)
10 TIGR02094 more_P_ylases alpha- 100.0 5.7E-30 1.2E-34 282.0 30.0 369 154-542 1-477 (601)
11 cd04299 GT1_Glycogen_Phosphory 99.9 1.8E-25 3.9E-30 250.5 28.8 364 153-542 87-566 (778)
12 PRK10307 putative glycosyl tra 99.9 3.5E-24 7.7E-29 228.4 28.7 293 152-541 1-303 (412)
13 PLN02871 UDP-sulfoquinovose:DA 99.9 1.1E-21 2.3E-26 213.0 30.3 271 149-541 56-331 (465)
14 TIGR03449 mycothiol_MshA UDP-N 99.9 6.5E-22 1.4E-26 210.0 26.5 284 154-541 1-302 (405)
15 TIGR02472 sucr_P_syn_N sucrose 99.9 2.8E-21 6.1E-26 208.2 30.9 294 166-540 24-335 (439)
16 cd03796 GT1_PIG-A_like This fa 99.9 7.8E-22 1.7E-26 209.6 25.8 262 153-541 1-269 (398)
17 TIGR02149 glgA_Coryne glycogen 99.9 3.1E-21 6.6E-26 203.1 27.2 273 152-541 1-280 (388)
18 TIGR02470 sucr_synth sucrose s 99.9 7.4E-21 1.6E-25 213.0 26.5 324 151-532 255-627 (784)
19 cd04962 GT1_like_5 This family 99.9 1.8E-20 4E-25 195.4 26.6 267 152-541 1-270 (371)
20 TIGR02468 sucrsPsyn_pln sucros 99.9 6.3E-20 1.4E-24 209.4 28.5 345 148-540 166-566 (1050)
21 cd03819 GT1_WavL_like This fam 99.8 3.1E-19 6.7E-24 184.7 25.9 250 166-541 8-263 (355)
22 PLN02846 digalactosyldiacylgly 99.8 3.7E-19 8.1E-24 190.4 24.9 287 150-533 3-293 (462)
23 PRK15484 lipopolysaccharide 1, 99.8 6.6E-19 1.4E-23 186.3 23.6 259 153-541 4-276 (380)
24 KOG1111 N-acetylglucosaminyltr 99.8 4.3E-20 9.4E-25 184.6 13.4 261 152-540 1-270 (426)
25 cd03812 GT1_CapH_like This fam 99.8 2.6E-18 5.6E-23 178.0 26.4 261 153-541 1-266 (358)
26 TIGR03088 stp2 sugar transfera 99.8 2.4E-18 5.3E-23 180.6 26.5 263 152-541 2-272 (374)
27 cd04951 GT1_WbdM_like This fam 99.8 2.6E-18 5.7E-23 177.7 26.2 258 153-541 1-262 (360)
28 PLN00142 sucrose synthase 99.8 5.2E-19 1.1E-23 198.3 21.5 320 152-531 280-649 (815)
29 cd03805 GT1_ALG2_like This fam 99.8 1.3E-18 2.9E-23 183.3 23.6 281 152-540 1-298 (392)
30 cd03800 GT1_Sucrose_synthase T 99.8 3.4E-18 7.3E-23 179.7 25.8 287 153-541 1-302 (398)
31 cd03816 GT1_ALG1_like This fam 99.8 2.8E-18 6.1E-23 183.6 24.9 282 152-541 4-314 (415)
32 cd03802 GT1_AviGT4_like This f 99.8 4.4E-18 9.6E-23 174.6 24.3 235 152-540 1-242 (335)
33 PRK15427 colanic acid biosynth 99.8 5.9E-18 1.3E-22 180.7 26.0 177 289-541 117-298 (406)
34 cd03818 GT1_ExpC_like This fam 99.8 8.2E-18 1.8E-22 178.6 25.6 283 153-541 1-300 (396)
35 cd04955 GT1_like_6 This family 99.8 1.7E-17 3.8E-22 171.9 27.3 263 153-541 1-267 (363)
36 cd03795 GT1_like_4 This family 99.8 3.6E-17 7.8E-22 168.9 24.3 258 153-540 1-262 (357)
37 cd03794 GT1_wbuB_like This fam 99.8 9E-17 1.9E-21 165.6 25.9 289 153-541 1-294 (394)
38 PRK15179 Vi polysaccharide bio 99.8 2E-16 4.4E-21 177.3 29.8 186 289-541 399-591 (694)
39 cd03807 GT1_WbnK_like This fam 99.8 5.7E-17 1.2E-21 165.8 22.7 263 153-541 1-268 (365)
40 cd03817 GT1_UGDG_like This fam 99.8 1.5E-16 3.2E-21 163.6 25.8 269 153-540 1-277 (374)
41 cd03792 GT1_Trehalose_phosphor 99.8 6.9E-17 1.5E-21 169.9 23.5 261 153-541 1-273 (372)
42 cd03821 GT1_Bme6_like This fam 99.8 1.6E-16 3.4E-21 163.2 25.4 273 153-540 1-280 (375)
43 PRK09922 UDP-D-galactose:(gluc 99.7 8.4E-17 1.8E-21 168.7 20.7 240 152-534 1-246 (359)
44 cd05844 GT1_like_7 Glycosyltra 99.7 1.3E-16 2.9E-21 166.1 20.8 178 289-541 81-264 (367)
45 cd03799 GT1_amsK_like This is 99.7 6.3E-16 1.4E-20 159.6 24.9 248 153-540 1-254 (355)
46 cd03814 GT1_like_2 This family 99.7 7.1E-16 1.5E-20 158.6 23.9 262 153-541 1-266 (364)
47 cd03793 GT1_Glycogen_synthase_ 99.7 7.9E-17 1.7E-21 173.9 16.8 298 156-495 6-326 (590)
48 PRK10125 putative glycosyl tra 99.7 4.4E-16 9.5E-21 166.1 22.1 263 152-508 1-282 (405)
49 cd03823 GT1_ExpE7_like This fa 99.7 9.1E-16 2E-20 157.3 23.2 259 153-541 1-262 (359)
50 cd03809 GT1_mtfB_like This fam 99.7 9E-16 1.9E-20 158.2 22.2 267 153-541 1-272 (365)
51 PLN02275 transferase, transfer 99.7 2.7E-15 5.8E-20 158.3 25.8 265 167-541 14-306 (371)
52 cd03820 GT1_amsD_like This fam 99.7 4.9E-15 1.1E-19 150.2 24.4 248 153-541 1-252 (348)
53 cd03801 GT1_YqgM_like This fam 99.7 1.6E-14 3.5E-19 146.9 27.9 268 153-540 1-274 (374)
54 cd03808 GT1_cap1E_like This fa 99.7 1.3E-14 2.8E-19 147.8 26.5 260 153-541 1-263 (359)
55 PRK00726 murG undecaprenyldiph 99.7 4.5E-15 9.7E-20 155.3 21.7 251 151-541 1-252 (357)
56 cd03806 GT1_ALG11_like This fa 99.7 3.1E-15 6.8E-20 160.4 19.8 128 374-540 181-323 (419)
57 cd03811 GT1_WabH_like This fam 99.7 1.4E-14 3.1E-19 146.8 23.6 258 153-540 1-262 (353)
58 cd03822 GT1_ecORF704_like This 99.7 1.4E-14 2.9E-19 149.4 23.5 255 153-541 1-267 (366)
59 PRK15490 Vi polysaccharide bio 99.7 1.2E-14 2.6E-19 157.1 23.4 128 382-541 339-472 (578)
60 cd03825 GT1_wcfI_like This fam 99.6 1E-14 2.2E-19 151.1 21.2 253 152-540 1-263 (365)
61 cd03798 GT1_wlbH_like This fam 99.6 1.3E-13 2.7E-18 141.0 27.4 270 154-540 1-277 (377)
62 TIGR03087 stp1 sugar transfera 99.6 7.4E-15 1.6E-19 156.1 16.4 128 374-541 164-297 (397)
63 cd03785 GT1_MurG MurG is an N- 99.6 9.2E-14 2E-18 144.5 22.7 250 153-541 1-252 (350)
64 PLN02501 digalactosyldiacylgly 99.6 3.8E-13 8.3E-18 147.2 26.6 117 383-540 499-617 (794)
65 cd03813 GT1_like_3 This family 99.6 4.6E-14 9.9E-19 153.8 19.2 189 289-541 172-370 (475)
66 PLN02949 transferase, transfer 99.6 5.1E-13 1.1E-17 144.7 23.6 127 375-540 213-353 (463)
67 PF13439 Glyco_transf_4: Glyco 99.5 1.6E-13 3.5E-18 126.9 13.1 175 157-430 3-177 (177)
68 TIGR01133 murG undecaprenyldip 99.5 1.4E-12 2.9E-17 135.6 21.4 247 152-541 1-250 (348)
69 PF13579 Glyco_trans_4_4: Glyc 99.5 2E-13 4.4E-18 124.1 12.6 160 168-423 1-160 (160)
70 cd03804 GT1_wbaZ_like This fam 99.4 3.9E-12 8.5E-17 132.4 17.9 114 375-541 146-261 (351)
71 PRK13609 diacylglycerol glucos 99.4 2.4E-11 5.2E-16 128.4 21.4 127 381-541 146-273 (380)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.3 4.6E-11 1E-15 129.7 18.3 200 290-541 131-360 (460)
73 TIGR02918 accessory Sec system 99.3 1.3E-10 2.7E-15 127.3 17.4 121 380-540 268-391 (500)
74 cd04946 GT1_AmsK_like This fam 99.2 3E-10 6.4E-15 121.5 18.5 123 376-539 177-306 (407)
75 PLN02605 monogalactosyldiacylg 99.2 3.2E-10 7E-15 120.1 17.4 128 381-542 149-283 (382)
76 TIGR02400 trehalose_OtsA alpha 99.2 8.2E-10 1.8E-14 119.5 18.8 201 290-542 127-356 (456)
77 PF09314 DUF1972: Domain of un 99.2 2E-09 4.4E-14 101.7 18.5 183 152-425 2-185 (185)
78 cd04949 GT1_gtfA_like This fam 99.1 8.3E-10 1.8E-14 115.7 16.1 121 380-541 155-278 (372)
79 PRK05749 3-deoxy-D-manno-octul 99.1 1E-08 2.2E-13 110.0 22.0 133 375-541 171-319 (425)
80 PF05693 Glycogen_syn: Glycoge 99.1 3.1E-10 6.8E-15 122.6 9.4 292 157-494 2-320 (633)
81 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 1.1E-08 2.5E-13 106.9 20.6 130 380-541 139-277 (363)
82 PHA01633 putative glycosyl tra 99.0 1.7E-08 3.7E-13 104.7 20.5 123 380-541 90-223 (335)
83 PRK13608 diacylglycerol glucos 99.0 5.7E-09 1.2E-13 111.1 15.7 127 381-541 146-273 (391)
84 PRK14501 putative bifunctional 98.9 3.6E-08 7.8E-13 113.0 18.2 199 290-541 133-361 (726)
85 TIGR02398 gluc_glyc_Psyn gluco 98.9 8.6E-08 1.9E-12 103.9 19.5 201 290-542 132-382 (487)
86 PLN03063 alpha,alpha-trehalose 98.9 6.5E-08 1.4E-12 111.3 18.7 153 291-495 148-306 (797)
87 PHA01630 putative group 1 glyc 98.9 1.9E-08 4.1E-13 104.7 13.0 90 380-507 92-183 (331)
88 cd04950 GT1_like_1 Glycosyltra 98.9 3E-07 6.5E-12 97.1 21.6 127 374-541 145-273 (373)
89 PF13477 Glyco_trans_4_2: Glyc 98.8 1.5E-07 3.3E-12 84.5 14.4 109 153-331 1-110 (139)
90 PRK00025 lpxB lipid-A-disaccha 98.8 1.9E-07 4.2E-12 98.4 17.2 124 380-541 132-261 (380)
91 cd01635 Glycosyltransferase_GT 98.7 4.8E-07 1E-11 86.5 17.3 65 473-540 109-179 (229)
92 TIGR00236 wecB UDP-N-acetylglu 98.6 8.2E-07 1.8E-11 93.4 15.4 171 289-531 85-262 (365)
93 PRK09814 beta-1,6-galactofuran 98.5 2.9E-06 6.3E-11 88.3 15.2 107 375-539 116-224 (333)
94 TIGR00215 lpxB lipid-A-disacch 98.3 3.2E-05 6.9E-10 82.3 18.4 114 379-526 135-255 (385)
95 PRK14986 glycogen phosphorylas 98.1 0.00042 9.1E-09 78.7 23.2 248 290-542 313-641 (815)
96 PRK12446 undecaprenyldiphospho 98.1 0.00073 1.6E-08 71.0 23.8 77 454-541 173-252 (352)
97 COG0058 GlgP Glucan phosphoryl 98.1 0.00011 2.3E-09 82.5 17.6 368 162-542 110-576 (750)
98 PLN03064 alpha,alpha-trehalose 97.9 0.00022 4.9E-09 82.7 16.9 153 291-495 232-390 (934)
99 PF00534 Glycos_transf_1: Glyc 97.9 4.1E-05 9E-10 71.0 8.6 83 453-540 2-91 (172)
100 cd04300 GT1_Glycogen_Phosphory 97.6 0.00046 1E-08 78.4 11.4 248 290-542 300-628 (797)
101 PF00862 Sucrose_synth: Sucros 97.5 0.0016 3.5E-08 69.7 14.3 138 149-330 268-434 (550)
102 TIGR02093 P_ylase glycogen/sta 97.5 0.00034 7.3E-09 79.2 9.3 249 290-542 297-625 (794)
103 KOG0853 Glycosyltransferase [C 97.5 0.0017 3.7E-08 70.0 13.9 294 144-531 27-353 (495)
104 PRK10117 trehalose-6-phosphate 97.4 0.007 1.5E-07 65.6 17.5 178 291-521 124-321 (474)
105 PRK14985 maltodextrin phosphor 97.4 0.00062 1.3E-08 77.1 9.4 247 290-542 302-627 (798)
106 KOG1387 Glycosyltransferase [C 97.3 0.011 2.4E-07 60.4 16.0 115 375-528 215-342 (465)
107 KOG2941 Beta-1,4-mannosyltrans 97.3 0.073 1.6E-06 54.6 21.7 191 289-522 102-316 (444)
108 KOG3742 Glycogen synthase [Car 97.2 0.00015 3.3E-09 75.6 1.4 170 292-494 176-351 (692)
109 PLN02205 alpha,alpha-trehalose 97.1 0.013 2.9E-07 68.2 16.7 179 292-520 203-404 (854)
110 COG0707 MurG UDP-N-acetylgluco 97.0 0.093 2E-06 55.2 20.4 70 467-542 182-253 (357)
111 PF00982 Glyco_transf_20: Glyc 97.0 0.015 3.3E-07 63.4 14.6 180 290-520 141-341 (474)
112 COG0380 OtsA Trehalose-6-phosp 96.9 0.031 6.8E-07 60.5 16.6 166 290-506 147-326 (486)
113 PF12000 Glyco_trans_4_3: Gkyc 96.9 0.012 2.7E-07 55.1 11.8 41 377-429 130-170 (171)
114 PF00343 Phosphorylase: Carboh 96.7 0.019 4.2E-07 64.7 13.1 167 372-542 321-542 (713)
115 PF13692 Glyco_trans_1_4: Glyc 96.6 0.0029 6.3E-08 56.1 4.8 66 468-541 2-70 (135)
116 COG0438 RfaG Glycosyltransfera 96.5 0.028 6.1E-07 55.8 11.5 119 382-539 150-274 (381)
117 PF04007 DUF354: Protein of un 95.8 0.38 8.3E-06 50.2 16.1 38 152-196 1-38 (335)
118 PF11997 DUF3492: Domain of un 95.6 0.27 5.8E-06 49.7 13.7 42 152-194 1-42 (268)
119 TIGR03590 PseG pseudaminic aci 94.4 5.7 0.00012 40.2 19.7 70 468-541 171-241 (279)
120 PF13528 Glyco_trans_1_3: Glyc 93.9 1.2 2.7E-05 45.3 14.1 36 152-194 1-36 (318)
121 TIGR03713 acc_sec_asp1 accesso 93.9 0.33 7.3E-06 53.7 10.3 53 468-521 319-376 (519)
122 PF08288 PIGA: PIGA (GPI ancho 93.5 0.36 7.7E-06 39.9 7.1 37 288-330 48-85 (90)
123 TIGR03568 NeuC_NnaA UDP-N-acet 87.5 27 0.00059 36.8 16.6 36 152-194 1-37 (365)
124 PF02350 Epimerase_2: UDP-N-ac 86.0 9.7 0.00021 39.9 12.2 169 289-528 66-244 (346)
125 PF01975 SurE: Survival protei 82.4 1.9 4E-05 41.5 4.5 38 152-196 1-38 (196)
126 TIGR02919 accessory Sec system 81.3 8.5 0.00019 41.8 9.6 106 381-540 238-346 (438)
127 PF02951 GSH-S_N: Prokaryotic 79.0 3.2 7E-05 36.6 4.5 40 152-194 1-40 (119)
128 cd03784 GT1_Gtf_like This fami 77.5 3.3 7.3E-05 43.7 5.0 37 152-194 1-37 (401)
129 TIGR00661 MJ1255 conserved hyp 73.1 22 0.00047 36.5 9.6 27 167-194 9-36 (321)
130 PF03033 Glyco_transf_28: Glyc 72.8 5.7 0.00012 35.0 4.6 27 168-194 9-35 (139)
131 PHA03392 egt ecdysteroid UDP-g 69.1 6.6 0.00014 43.5 4.9 38 152-194 21-58 (507)
132 COG2910 Putative NADH-flavin r 68.5 8.1 0.00018 36.8 4.6 33 152-194 1-33 (211)
133 PRK00207 sulfur transfer compl 64.7 14 0.0003 33.0 5.2 38 152-192 1-39 (128)
134 PF09949 DUF2183: Uncharacteri 64.1 16 0.00034 31.2 5.2 32 496-527 63-94 (100)
135 PLN00016 RNA-binding protein; 63.4 7.7 0.00017 40.9 3.9 40 149-194 50-89 (378)
136 PRK06756 flavodoxin; Provision 61.8 15 0.00032 33.2 5.0 38 151-193 1-38 (148)
137 TIGR03492 conserved hypothetic 60.7 2.3E+02 0.0051 30.1 17.1 37 467-503 204-244 (396)
138 PF03808 Glyco_tran_WecB: Glyc 58.7 59 0.0013 30.3 8.6 58 473-530 77-134 (172)
139 PRK09271 flavodoxin; Provision 58.4 18 0.00038 33.4 4.9 36 152-192 1-36 (160)
140 cd06533 Glyco_transf_WecG_TagA 58.3 57 0.0012 30.4 8.4 58 473-530 75-132 (171)
141 PF03358 FMN_red: NADPH-depend 56.7 26 0.00057 31.5 5.7 40 152-194 1-40 (152)
142 PRK03692 putative UDP-N-acetyl 56.1 61 0.0013 32.2 8.6 70 451-530 120-190 (243)
143 COG4635 HemG Flavodoxin [Energ 55.4 19 0.0004 33.4 4.3 37 152-193 1-37 (175)
144 COG1817 Uncharacterized protei 54.6 2.7E+02 0.0058 28.9 19.5 39 152-197 1-39 (346)
145 COG0763 LpxB Lipid A disacchar 54.2 1.9E+02 0.0041 30.8 12.0 54 452-506 174-231 (381)
146 PRK10037 cell division protein 53.6 17 0.00037 36.0 4.3 35 152-192 1-37 (250)
147 PF06925 MGDG_synth: Monogalac 52.9 1.1E+02 0.0023 28.3 9.3 18 382-399 137-154 (169)
148 TIGR01915 npdG NADPH-dependent 52.5 20 0.00043 34.8 4.4 32 152-193 1-32 (219)
149 CHL00175 minD septum-site dete 52.1 25 0.00055 35.3 5.3 39 149-193 12-52 (281)
150 CHL00072 chlL photochlorophyll 51.8 18 0.00039 36.9 4.2 34 152-193 1-36 (290)
151 COG0716 FldA Flavodoxins [Ener 51.7 21 0.00046 32.4 4.3 37 151-192 1-37 (151)
152 COG1519 KdtA 3-deoxy-D-manno-o 51.0 3.5E+02 0.0076 29.2 14.1 113 374-522 169-284 (419)
153 COG1819 Glycosyl transferases, 49.9 18 0.00038 38.9 4.0 38 151-194 1-38 (406)
154 PRK06703 flavodoxin; Provision 49.1 30 0.00066 31.2 4.9 38 151-193 1-38 (151)
155 PF02374 ArsA_ATPase: Anion-tr 48.7 23 0.0005 36.4 4.4 36 152-194 1-38 (305)
156 PLN02572 UDP-sulfoquinovose sy 47.7 39 0.00085 36.6 6.2 38 145-192 41-78 (442)
157 COG1763 MobB Molybdopterin-gua 47.5 31 0.00068 32.1 4.6 40 151-195 1-40 (161)
158 PRK06249 2-dehydropantoate 2-r 46.4 33 0.00071 35.3 5.1 34 150-194 4-37 (313)
159 TIGR01281 DPOR_bchL light-inde 46.3 25 0.00054 35.1 4.2 33 152-192 1-35 (268)
160 PF02441 Flavoprotein: Flavopr 46.3 39 0.00085 29.8 5.0 36 152-194 1-36 (129)
161 PRK13932 stationary phase surv 45.2 28 0.0006 35.0 4.2 38 150-195 4-41 (257)
162 TIGR01380 glut_syn glutathione 45.2 23 0.0005 36.5 3.8 41 152-195 1-41 (312)
163 TIGR01754 flav_RNR ribonucleot 44.4 35 0.00076 30.5 4.4 35 152-191 1-35 (140)
164 TIGR00087 surE 5'/3'-nucleotid 43.9 29 0.00062 34.6 4.1 36 152-195 1-36 (244)
165 TIGR00696 wecB_tagA_cpsF bacte 42.9 70 0.0015 30.2 6.4 42 482-523 33-74 (177)
166 PLN02166 dTDP-glucose 4,6-dehy 42.1 32 0.0007 37.2 4.5 37 147-193 116-152 (436)
167 PLN02778 3,5-epimerase/4-reduc 42.0 36 0.00078 34.6 4.6 36 146-191 4-39 (298)
168 PRK02122 glucosamine-6-phospha 41.9 54 0.0012 37.5 6.4 43 149-197 367-409 (652)
169 PF00201 UDPGT: UDP-glucoronos 41.8 10 0.00022 41.5 0.6 28 168-195 10-37 (500)
170 PRK08305 spoVFB dipicolinate s 41.7 50 0.0011 31.8 5.2 36 151-194 5-42 (196)
171 PRK01021 lpxB lipid-A-disaccha 41.7 5.8E+02 0.013 29.0 15.4 64 453-520 400-468 (608)
172 CHL00194 ycf39 Ycf39; Provisio 41.5 35 0.00076 34.9 4.5 33 152-194 1-33 (317)
173 TIGR02195 heptsyl_trn_II lipop 41.5 1E+02 0.0022 31.6 8.0 68 453-524 161-232 (334)
174 KOG1429 dTDP-glucose 4-6-dehyd 41.2 56 0.0012 33.4 5.5 37 146-192 22-58 (350)
175 PF02684 LpxB: Lipid-A-disacch 40.4 4.8E+02 0.01 27.7 15.8 68 454-525 173-245 (373)
176 PLN02695 GDP-D-mannose-3',5'-e 40.2 44 0.00096 35.1 5.1 37 147-193 17-53 (370)
177 cd02032 Bchl_like This family 39.0 37 0.0008 33.8 4.1 34 152-193 1-36 (267)
178 PRK11104 hemG protoporphyrinog 38.1 39 0.00084 31.7 3.8 36 152-193 1-36 (177)
179 COG2085 Predicted dinucleotide 37.7 41 0.00088 32.7 3.9 28 168-195 7-34 (211)
180 PRK05246 glutathione synthetas 36.7 38 0.00082 34.9 3.8 42 151-195 1-42 (316)
181 COG3980 spsG Spore coat polysa 36.5 53 0.0012 33.4 4.6 40 152-193 1-40 (318)
182 cd02040 NifH NifH gene encodes 36.5 43 0.00094 33.1 4.2 26 168-193 10-37 (270)
183 PRK05723 flavodoxin; Provision 36.1 55 0.0012 30.0 4.4 36 152-192 1-36 (151)
184 COG4671 Predicted glycosyl tra 35.4 3.4E+02 0.0074 28.7 10.3 41 150-194 8-50 (400)
185 TIGR00696 wecB_tagA_cpsF bacte 35.3 2.1E+02 0.0045 27.0 8.3 68 451-527 63-130 (177)
186 PRK13236 nitrogenase reductase 35.0 58 0.0013 33.2 4.9 39 148-193 2-42 (296)
187 PRK13849 putative crown gall t 34.9 57 0.0012 32.1 4.6 37 152-194 1-39 (231)
188 cd06533 Glyco_transf_WecG_TagA 34.6 1.2E+02 0.0026 28.2 6.6 42 481-522 30-71 (171)
189 PRK13933 stationary phase surv 34.6 47 0.001 33.3 3.9 36 152-195 1-36 (253)
190 PRK07454 short chain dehydroge 34.4 59 0.0013 31.3 4.7 34 151-193 5-38 (241)
191 COG0496 SurE Predicted acid ph 34.4 50 0.0011 33.0 4.1 37 152-196 1-37 (252)
192 TIGR01007 eps_fam capsular exo 33.7 70 0.0015 30.3 5.0 38 152-193 17-54 (204)
193 PRK05568 flavodoxin; Provision 33.7 81 0.0018 27.9 5.1 36 153-193 3-38 (142)
194 PRK03767 NAD(P)H:quinone oxido 33.5 74 0.0016 30.3 5.1 38 151-193 1-39 (200)
195 TIGR03453 partition_RepA plasm 33.3 62 0.0013 34.4 4.9 39 149-193 101-141 (387)
196 PRK13185 chlL protochlorophyll 33.2 59 0.0013 32.4 4.5 25 168-192 11-37 (270)
197 PRK09004 FMN-binding protein M 33.2 71 0.0015 28.9 4.6 35 153-192 3-37 (146)
198 PRK13934 stationary phase surv 33.1 51 0.0011 33.3 3.9 36 152-195 1-36 (266)
199 PRK07308 flavodoxin; Validated 32.6 79 0.0017 28.3 4.8 27 166-192 11-37 (146)
200 TIGR00715 precor6x_red precorr 32.6 62 0.0013 32.5 4.5 32 152-194 1-32 (256)
201 COG1553 DsrE Uncharacterized c 32.5 1E+02 0.0022 27.4 5.1 39 152-193 1-40 (126)
202 PRK09739 hypothetical protein; 32.0 95 0.0021 29.5 5.5 41 151-194 3-43 (199)
203 PRK06924 short chain dehydroge 31.8 60 0.0013 31.4 4.2 24 167-193 10-33 (251)
204 PF02525 Flavodoxin_2: Flavodo 31.6 87 0.0019 29.6 5.2 40 152-193 1-41 (199)
205 COG0300 DltE Short-chain dehyd 31.4 83 0.0018 31.8 5.1 35 151-194 5-39 (265)
206 PRK00346 surE 5'(3')-nucleotid 31.4 59 0.0013 32.5 4.0 36 152-195 1-36 (250)
207 PRK09730 putative NAD(P)-bindi 31.4 59 0.0013 31.2 4.1 33 152-193 1-33 (247)
208 PRK13935 stationary phase surv 31.2 64 0.0014 32.3 4.3 37 152-196 1-37 (253)
209 PLN03007 UDP-glucosyltransfera 31.2 78 0.0017 34.8 5.4 41 149-195 3-43 (482)
210 PRK05693 short chain dehydroge 31.1 60 0.0013 32.1 4.2 34 152-194 1-34 (274)
211 PRK05569 flavodoxin; Provision 31.0 96 0.0021 27.4 5.1 38 152-194 2-39 (141)
212 PRK13869 plasmid-partitioning 30.8 69 0.0015 34.4 4.7 37 150-192 119-157 (405)
213 PRK10446 ribosomal protein S6 30.8 61 0.0013 33.0 4.2 35 152-194 1-35 (300)
214 PRK05920 aromatic acid decarbo 30.6 94 0.002 30.1 5.2 37 151-194 3-39 (204)
215 COG1922 WecG Teichoic acid bio 30.6 2.4E+02 0.0052 28.3 8.1 71 451-530 123-194 (253)
216 PRK07023 short chain dehydroge 30.4 76 0.0017 30.6 4.7 34 151-194 1-34 (243)
217 PRK06522 2-dehydropantoate 2-r 30.2 70 0.0015 32.2 4.5 32 152-194 1-32 (304)
218 PRK12921 2-dehydropantoate 2-r 30.0 65 0.0014 32.6 4.2 31 152-193 1-31 (305)
219 PRK13230 nitrogenase reductase 29.8 69 0.0015 32.1 4.3 25 168-192 10-36 (279)
220 COG0381 WecB UDP-N-acetylgluco 29.7 7.2E+02 0.016 26.6 13.5 147 288-503 90-243 (383)
221 COG1090 Predicted nucleoside-d 29.6 47 0.001 33.7 3.0 30 167-196 4-33 (297)
222 PLN03209 translocon at the inn 29.3 85 0.0018 35.3 5.2 33 153-194 81-113 (576)
223 PRK10675 UDP-galactose-4-epime 29.0 68 0.0015 32.8 4.2 32 152-193 1-32 (338)
224 TIGR01968 minD_bact septum sit 28.8 79 0.0017 30.9 4.5 27 167-193 10-38 (261)
225 PRK06953 short chain dehydroge 28.8 66 0.0014 30.7 3.9 34 152-194 1-34 (222)
226 PF13460 NAD_binding_10: NADH( 28.6 59 0.0013 29.8 3.4 27 168-194 5-31 (183)
227 COG0003 ArsA Predicted ATPase 28.3 1E+02 0.0022 32.0 5.3 37 151-194 1-39 (322)
228 PRK12745 3-ketoacyl-(acyl-carr 28.2 79 0.0017 30.6 4.4 27 168-194 9-35 (256)
229 PF06564 YhjQ: YhjQ protein; 28.0 96 0.0021 30.9 4.8 35 152-192 1-37 (243)
230 COG0702 Predicted nucleoside-d 27.9 71 0.0015 31.2 4.0 28 168-195 7-34 (275)
231 PRK06849 hypothetical protein; 27.9 86 0.0019 33.2 4.9 35 150-194 3-37 (389)
232 TIGR01426 MGT glycosyltransfer 27.8 46 0.001 35.0 2.8 21 174-194 12-32 (392)
233 PRK10538 malonic semialdehyde 27.7 90 0.0019 30.3 4.7 32 152-193 1-32 (248)
234 COG0569 TrkA K+ transport syst 27.5 50 0.0011 32.4 2.7 27 168-194 6-32 (225)
235 PRK08105 flavodoxin; Provision 27.3 1E+02 0.0022 28.0 4.6 28 166-193 11-38 (149)
236 PRK13232 nifH nitrogenase redu 27.2 71 0.0015 31.9 3.9 25 168-192 10-36 (273)
237 PRK07313 phosphopantothenoylcy 27.1 1.1E+02 0.0024 28.9 5.0 35 152-194 2-37 (182)
238 PRK08177 short chain dehydroge 27.0 82 0.0018 30.1 4.2 34 152-194 1-34 (225)
239 PRK13235 nifH nitrogenase redu 26.8 79 0.0017 31.6 4.2 25 168-192 10-36 (274)
240 PRK10427 putative PTS system f 26.8 1.3E+02 0.0028 26.3 4.9 39 151-194 2-42 (114)
241 PF10727 Rossmann-like: Rossma 26.6 98 0.0021 27.5 4.2 35 149-194 8-42 (127)
242 PRK06719 precorrin-2 dehydroge 26.5 58 0.0013 30.0 2.9 24 171-194 22-45 (157)
243 PRK05708 2-dehydropantoate 2-r 26.5 86 0.0019 32.1 4.4 33 151-194 2-34 (305)
244 PLN02206 UDP-glucuronate decar 26.2 89 0.0019 33.9 4.7 35 148-192 116-150 (442)
245 PRK06101 short chain dehydroge 26.1 89 0.0019 30.2 4.3 33 152-193 1-33 (240)
246 PF08660 Alg14: Oligosaccharid 26.0 5.4E+02 0.012 23.9 9.5 29 167-195 7-37 (170)
247 PF03721 UDPG_MGDP_dh_N: UDP-g 25.9 81 0.0018 29.8 3.8 31 152-193 1-31 (185)
248 PRK00170 azoreductase; Reviewe 25.9 1.3E+02 0.0028 28.3 5.3 40 151-193 1-43 (201)
249 PRK01372 ddl D-alanine--D-alan 25.8 1.2E+02 0.0026 30.7 5.3 42 151-194 4-45 (304)
250 PLN00141 Tic62-NAD(P)-related 25.6 1.2E+02 0.0026 29.7 5.1 35 150-194 16-50 (251)
251 PRK07102 short chain dehydroge 25.5 90 0.0019 30.1 4.2 24 168-194 11-34 (243)
252 PF13614 AAA_31: AAA domain; P 25.1 1.4E+02 0.003 26.6 5.1 29 167-195 11-39 (157)
253 TIGR03029 EpsG chain length de 25.0 1.4E+02 0.0031 29.7 5.7 40 150-193 101-140 (274)
254 PHA02519 plasmid partition pro 25.0 1E+02 0.0023 32.8 4.9 38 149-192 103-142 (387)
255 TIGR03018 pepcterm_TyrKin exop 24.9 1.6E+02 0.0035 28.0 5.8 40 149-194 32-74 (207)
256 PRK08267 short chain dehydroge 24.9 94 0.002 30.3 4.3 24 168-194 11-34 (260)
257 COG2894 MinD Septum formation 24.9 1E+02 0.0022 30.5 4.2 37 153-195 3-41 (272)
258 PRK00094 gpsA NAD(P)H-dependen 24.7 1E+02 0.0022 31.3 4.7 33 151-194 1-33 (325)
259 PRK13234 nifH nitrogenase redu 24.3 1.1E+02 0.0024 31.2 4.7 25 168-192 13-39 (295)
260 PF00070 Pyr_redox: Pyridine n 24.1 89 0.0019 24.7 3.2 25 171-195 8-32 (80)
261 KOG1192 UDP-glucuronosyl and U 24.0 1.1E+02 0.0025 33.1 5.1 38 151-195 6-43 (496)
262 PLN02712 arogenate dehydrogena 23.8 1.5E+02 0.0031 34.2 6.0 44 140-194 41-84 (667)
263 PRK07453 protochlorophyllide o 23.7 1.1E+02 0.0024 31.1 4.7 35 151-194 5-39 (322)
264 PRK08340 glucose-1-dehydrogena 23.7 1.1E+02 0.0025 29.8 4.6 32 152-193 1-32 (259)
265 PLN02208 glycosyltransferase f 23.7 1.3E+02 0.0028 32.7 5.3 39 150-194 3-41 (442)
266 PRK08229 2-dehydropantoate 2-r 23.7 99 0.0022 31.9 4.3 32 151-193 2-33 (341)
267 PRK14494 putative molybdopteri 23.6 1.4E+02 0.0031 29.4 5.2 38 152-194 1-38 (229)
268 PF00258 Flavodoxin_1: Flavodo 23.4 1.6E+02 0.0034 26.0 5.0 30 166-195 6-35 (143)
269 TIGR03012 sulf_tusD_dsrE sulfu 23.3 1.5E+02 0.0034 26.1 4.9 37 153-192 1-38 (127)
270 TIGR01755 flav_wrbA NAD(P)H:qu 23.2 1.5E+02 0.0032 28.3 5.1 37 152-193 1-38 (197)
271 cd03813 GT1_like_3 This family 23.1 65 0.0014 35.1 2.9 41 153-194 1-41 (475)
272 PRK05993 short chain dehydroge 22.8 1.1E+02 0.0024 30.3 4.3 34 152-194 4-37 (277)
273 PF02635 DrsE: DsrE/DsrF-like 22.8 2.3E+02 0.005 23.7 5.8 40 152-194 1-43 (122)
274 TIGR01963 PHB_DH 3-hydroxybuty 22.7 1E+02 0.0022 29.7 4.0 24 168-194 11-34 (255)
275 PRK05884 short chain dehydroge 22.7 1.3E+02 0.0029 28.8 4.8 33 152-194 1-33 (223)
276 PRK13705 plasmid-partitioning 22.3 1.3E+02 0.0029 32.0 5.0 37 150-192 104-142 (388)
277 PF00185 OTCace: Aspartate/orn 22.3 1.4E+02 0.0029 27.5 4.4 36 151-195 2-37 (158)
278 COG0655 WrbA Multimeric flavod 22.0 1.6E+02 0.0034 28.2 5.0 40 152-194 1-40 (207)
279 PRK08655 prephenate dehydrogen 21.8 1.1E+02 0.0024 33.2 4.3 33 152-194 1-33 (437)
280 PRK03692 putative UDP-N-acetyl 21.7 2.8E+02 0.0061 27.6 6.8 16 378-393 57-72 (243)
281 PRK12825 fabG 3-ketoacyl-(acyl 21.7 1.3E+02 0.0029 28.5 4.6 24 168-194 16-39 (249)
282 PRK08309 short chain dehydroge 21.7 1.4E+02 0.0031 27.9 4.5 25 168-193 7-31 (177)
283 PRK12824 acetoacetyl-CoA reduc 21.2 1.3E+02 0.0028 28.8 4.3 27 168-194 9-35 (245)
284 PF03808 Glyco_tran_WecB: Glyc 21.1 2.1E+02 0.0045 26.6 5.5 15 380-394 3-17 (172)
285 PRK14619 NAD(P)H-dependent gly 21.1 1.4E+02 0.0031 30.4 4.9 34 150-194 3-36 (308)
286 PRK14571 D-alanyl-alanine synt 20.9 1.7E+02 0.0036 29.6 5.3 40 152-193 1-40 (299)
287 PRK06029 3-octaprenyl-4-hydrox 20.9 1.6E+02 0.0034 28.1 4.6 35 152-194 2-38 (185)
288 PRK01018 50S ribosomal protein 20.8 3.4E+02 0.0074 22.8 6.3 55 481-538 19-74 (99)
289 PLN02686 cinnamoyl-CoA reducta 20.7 1.6E+02 0.0034 30.9 5.1 26 168-193 60-85 (367)
290 PF02606 LpxK: Tetraacyldisacc 20.6 1.3E+02 0.0028 31.3 4.4 44 149-197 32-77 (326)
291 PRK00211 sulfur relay protein 20.6 1.9E+02 0.0041 25.3 4.8 41 151-194 1-41 (119)
292 PRK04155 chaperone protein Hch 20.4 2.9E+02 0.0063 28.2 6.8 46 149-194 47-99 (287)
293 TIGR00639 PurN phosphoribosylg 20.4 3.3E+02 0.0072 25.9 6.8 35 152-195 1-37 (190)
294 PRK12367 short chain dehydroge 20.4 1.3E+02 0.0028 29.6 4.2 33 153-194 15-47 (245)
295 PRK11199 tyrA bifunctional cho 20.0 1.1E+02 0.0025 32.3 3.9 34 151-194 98-131 (374)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-50 Score=452.92 Aligned_cols=372 Identities=32% Similarity=0.481 Sum_probs=299.5
Q ss_pred cCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcc-cCceeEEeecCCcee
Q 009139 147 QTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKD-LGCCMKICCFGGEQE 225 (542)
Q Consensus 147 ~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~-~~~~~~v~~~g~~~~ 225 (542)
.++++|||+||++|+.|++++||++.++..|+++|+++||+|.||+|.|...... .. ..+. ......+...|....
T Consensus 477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~--~~-~~~~~~~~~~~~~~~g~~~~ 553 (977)
T PLN02939 477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYD--QI-RNLKVLDVVVESYFDGNLFK 553 (977)
T ss_pred CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChh--hh-hcccccceEEEEeecCceeE
Confidence 4578899999999999999999999999999999999999999999999754210 00 0000 011111222233334
Q ss_pred EEEEEeeeCCeEEEEEcC--C-CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchh
Q 009139 226 IAFFHEYREGVDWVFVDH--P-SYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAG 302 (542)
Q Consensus 226 ~~~~~~~~~gv~v~~i~~--p-~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~ 302 (542)
++++....+||++|+|++ | .|+.++.+|+ ++|+..||.+|++++++++..+ + ++|||||+|+|+++
T Consensus 554 ~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg-----~~Dn~~RF~~FsrAaLe~~~~~---~---~~PDIIH~HDW~Ta 622 (977)
T PLN02939 554 NKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYG-----EHDDFKRFSYFSRAALELLYQS---G---KKPDIIHCHDWQTA 622 (977)
T ss_pred EEEEEEEECCeeEEEEecCCchhccCCCCCCC-----CccHHHHHHHHHHHHHHHHHhc---C---CCCCEEEECCccHH
Confidence 678888889999999985 3 2777778887 4699999999999999987654 2 48999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHh
Q 009139 303 LVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVT 382 (542)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ 382 (542)
+++.++...+...+ +.++|+|+|+||+.|+|.++...+..+|++..++....... -.++..+|+++.++.+
T Consensus 623 LV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le--------~~~~~~iN~LK~GIv~ 693 (977)
T PLN02939 623 FVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQ--------DNAHGRINVVKGAIVY 693 (977)
T ss_pred HHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhh--------hccCCchHHHHHHHHh
Confidence 98555444333222 35789999999999999998877777888876653111100 0124568999999999
Q ss_pred cCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCC
Q 009139 383 ADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGL 462 (542)
Q Consensus 383 ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl 462 (542)
||.|+|||+.|++++.. .+|+||+..+.....|+.+|+||||++.|.|.+++.++.+|+++++.+|..+|..+|+++|+
T Consensus 694 AD~VtTVSptYA~EI~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL 772 (977)
T PLN02939 694 SNIVTTVSPTYAQEVRS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGL 772 (977)
T ss_pred CCeeEeeeHHHHHHHHH-HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCC
Confidence 99999999999999988 77899999888889999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCc-hhhHHHHHHHHHHcC--CCEEEEccCChhhhhh
Q 009139 463 PIR-PDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGD-PQFESWMRDTEATYK--DKYRGWVGFNVPISHR 538 (542)
Q Consensus 463 ~~~-~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~-~~~~~~l~~la~~~~--~~v~~~~Gy~~~l~~~ 538 (542)
+.+ ++.++|+||||+.++||++.|++|+..+.+.+++|+|+|+|+ +.+++.+++++++++ ++|.+..+|++.+++.
T Consensus 773 ~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~ 852 (977)
T PLN02939 773 SSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHS 852 (977)
T ss_pred CcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHH
Confidence 742 467999999999999999999999998876789999999995 456788999998874 4676555678888888
Q ss_pred hhcC
Q 009139 539 ITAG 542 (542)
Q Consensus 539 ~~A~ 542 (542)
++|+
T Consensus 853 IYAa 856 (977)
T PLN02939 853 IYAA 856 (977)
T ss_pred HHHh
Confidence 8775
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.5e-49 Score=428.63 Aligned_cols=365 Identities=34% Similarity=0.526 Sum_probs=297.1
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEE
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFF 229 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 229 (542)
++|||+||++|+.|+.++||++.++..|+++|+++||+|.||+|.|..... ... .......+.+. .+. .++++
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~---~~~-~~~~~~~~~~~-~~~--~~~~~ 74 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLA---GIE-DAEQVHSFPDL-FGG--PARLL 74 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhh---hhc-CceEEEEEeee-CCc--eEEEE
Confidence 469999999999999999999999999999999999999999999965421 000 00000111111 122 45667
Q ss_pred EeeeCCeEEEEEcCCCCCCCC-CCCCCC-CCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHH
Q 009139 230 HEYREGVDWVFVDHPSYHRPG-NPYGDI-NGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVL 307 (542)
Q Consensus 230 ~~~~~gv~v~~i~~p~~~~~~-~~y~~~-~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~ 307 (542)
+...+|+++|++++|.|+.++ .+|++. ..+|+||..||.+||++++++++.+. ...+|||||+|+|++++++.+
T Consensus 75 ~~~~~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~----~~~~pDIiH~Hdw~~~l~~~~ 150 (485)
T PRK14099 75 AARAGGLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLV----PGFVPDIVHAHDWQAGLAPAY 150 (485)
T ss_pred EEEeCCceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhc----cCCCCCEEEECCcHHHHHHHH
Confidence 777899999999999877665 478643 24689999999999999998875431 124899999999999999987
Q ss_pred HHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCcee
Q 009139 308 LASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLL 387 (542)
Q Consensus 308 l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi 387 (542)
+.... ..++|+|+|+|+..+++.++...+..+|++..++... .++++..+++++.+++.||.|+
T Consensus 151 l~~~~-----~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~k~~i~~ad~vi 214 (485)
T PRK14099 151 LHYSG-----RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLD-----------GVEYYGGIGYLKAGLQLADRIT 214 (485)
T ss_pred HHhCC-----CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCch-----------hhhhCCCccHHHHHHHhcCeee
Confidence 76321 1468999999999999988776666677766554321 1112334578899999999999
Q ss_pred ecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCC
Q 009139 388 TVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPD 467 (542)
Q Consensus 388 ~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~ 467 (542)
|||+.+++++.....|.|++..+..+..|+.+|+||||++.|.|..++.++.+|+.++..+|..+|..+++++|++.+++
T Consensus 215 tVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~ 294 (485)
T PRK14099 215 TVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPD 294 (485)
T ss_pred ecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccC
Confidence 99999999998776778888878777899999999999999999988888889999888888899999999999975557
Q ss_pred CCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 468 CPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 468 ~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
.++|++|||+.++||++.|++|++.+.+.+++|+|+|+|++.+++.+++++++++++++.++||+++++++|+|
T Consensus 295 ~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a 368 (485)
T PRK14099 295 ALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQA 368 (485)
T ss_pred CcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHh
Confidence 89999999999999999999999999877899999999987788999999999888887899999999999976
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=7e-49 Score=426.65 Aligned_cols=374 Identities=30% Similarity=0.493 Sum_probs=293.6
Q ss_pred CCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhh-hhcccCceeEEeecCCceeE
Q 009139 148 TRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFT-LAKDLGCCMKICCFGGEQEI 226 (542)
Q Consensus 148 ~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~ 226 (542)
++++|||+||++|..|++++||++.++..|+++|+++||+|.||+|.|..... ..+. ........+.+...+....+
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTIND--RKFRLHDVLRLSDIEVPLKEKTDLL 79 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhh--hhhccccceEEEEEEEeecCeeEEE
Confidence 56779999999999999999999999999999999999999999999965421 0000 00000011222221111111
Q ss_pred EEEEeeeC--CeEEEEEcCCCCCCCCCCCCCC--CCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchh
Q 009139 227 AFFHEYRE--GVDWVFVDHPSYHRPGNPYGDI--NGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAG 302 (542)
Q Consensus 227 ~~~~~~~~--gv~v~~i~~p~~~~~~~~y~~~--~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~ 302 (542)
.+.....+ ++++|++++|.|+.++.+|++. .++|+||..||.+|+++++++++.+ + .+|||||+|+|+++
T Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~---~---~~pDiiH~hdw~t~ 153 (489)
T PRK14098 80 HVKVTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRL---G---WKPDIIHCHDWYAG 153 (489)
T ss_pred EEEEecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhc---C---CCCCEEEecCcHHH
Confidence 22122233 6999999999988888899863 2579999999999999999887654 2 38999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHh
Q 009139 303 LVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVT 382 (542)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ 382 (542)
++|.+++..+.....+.++|+|+|+|+..++|.++...+..+ ++..++..+.+ ....+++++.++..
T Consensus 154 l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~~~~~------------~~~~~n~lk~~i~~ 220 (489)
T PRK14098 154 LVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCSGLHR------------EGDEVNMLYTGVEH 220 (489)
T ss_pred HHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhhhhhh------------cCCcccHHHHHHHh
Confidence 999988765432222358999999999999998776544333 33332211110 12357899999999
Q ss_pred cCceeecChhhHHHHHhh-ccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhC
Q 009139 383 ADRLLTVSKGYSWEITTV-EGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELG 461 (542)
Q Consensus 383 ad~Vi~vS~~~~~~l~~~-~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lG 461 (542)
||.|++||+.+++++... ..++|++..|.....|+.+|+||||++.|.|.+++.+..+|+.+++.+|..+|..+++++|
T Consensus 221 ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lg 300 (489)
T PRK14098 221 ADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVG 300 (489)
T ss_pred cCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhC
Confidence 999999999999999763 5568888888777899999999999999999988888888999888899999999999999
Q ss_pred CCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 462 LPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 462 l~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
++.+++.++|+++||+.++||+++|++|++++.+.+++|+|+|+|+..+++.+++++++++++|.+..+++++..+.++|
T Consensus 301 l~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a 380 (489)
T PRK14098 301 LPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA 380 (489)
T ss_pred CCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH
Confidence 98767889999999999999999999999999877899999999987788999999999988887666778887777766
Q ss_pred C
Q 009139 542 G 542 (542)
Q Consensus 542 ~ 542 (542)
+
T Consensus 381 ~ 381 (489)
T PRK14098 381 G 381 (489)
T ss_pred h
Confidence 4
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=4.7e-46 Score=404.18 Aligned_cols=363 Identities=42% Similarity=0.657 Sum_probs=294.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||+||++|+.|+.++||+++++..|+++|+++||+|.|++|.|+..... ............+...|..+.+++++.
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDE---VDDQVKVVELVDLSVGPRTLYVKVFEG 77 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhh---hccCeEEEEEEEEeecCceeEEEEEEE
Confidence 89999999999999999999999999999999999999999999754211 000011112334445566677888888
Q ss_pred eeCCeEEEEEcCCCCCCC-CCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHH
Q 009139 232 YREGVDWVFVDHPSYHRP-GNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLAS 310 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~-~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~ 310 (542)
..+|+++|+++++.++.+ +.+|+. +|.++..++.+|+.+++++++.+ ..+|||||+|+|++++++.+++.
T Consensus 78 ~~~~v~~~~i~~~~~~~r~~~~y~~---~~~d~~~r~~~f~~a~~~~~~~~------~~~~DiiH~hdw~~~~~~~~l~~ 148 (473)
T TIGR02095 78 VVEGVPVYFIDNPSLFDRPGGIYGD---DYPDNAERFAFFSRAAAELLSGL------GWQPDVVHAHDWHTALVPALLKA 148 (473)
T ss_pred EECCceEEEEECHHHcCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHhc------CCCCCEEEECCcHHHHHHHHHHh
Confidence 899999999998875554 347874 47789999999999998887653 24899999999999999988876
Q ss_pred hcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecC
Q 009139 311 KYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390 (542)
Q Consensus 311 ~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS 390 (542)
.+.. .++|+|+|+|+..++|.++...+..++++..++... .+++...+++++.++..||.|++||
T Consensus 149 ~~~~----~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~k~~~~~ad~v~tVS 213 (473)
T TIGR02095 149 VYRP----NPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHME-----------GLEFYGRVNFLKGGIVYADRVTTVS 213 (473)
T ss_pred hccC----CCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCch-----------hhhcCCchHHHHHHHHhCCcCeecC
Confidence 5421 148999999999888887765555556654433211 1122345788999999999999999
Q ss_pred hhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCE
Q 009139 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPL 470 (542)
Q Consensus 391 ~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~v 470 (542)
+.+++++.....++|++..+..++.++.+|+||||++.|.|..+..+..+|+.++..+|..+|..+++++|++.+++.++
T Consensus 214 ~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~ 293 (473)
T TIGR02095 214 PTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPL 293 (473)
T ss_pred HhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCE
Confidence 99999998766677887777777889999999999999999888878888888888888889999999999985557899
Q ss_pred EEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 471 IGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 471 IlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
|+|+||+.++||++.|++|++++.+.+++|+|+|+|++.++++++++++++++++.++.+++++..+.+++
T Consensus 294 i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 294 FGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred EEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 99999999999999999999999877899999999987788999999998888888888998887766654
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=7.8e-46 Score=401.71 Aligned_cols=353 Identities=41% Similarity=0.646 Sum_probs=283.2
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||+||++|++|+.++||+++++..|+++|+++||+|+|++|.|+..... ... ......+ ..++++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~---~~~---~~~~~~~------~~~~~~~~ 68 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREK---LRD---AQVVGRL------DLFTVLFG 68 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhh---hcC---ceEEEEe------eeEEEEEE
Confidence 89999999999999999999999999999999999999999998653210 000 0000000 01222322
Q ss_pred --eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHH
Q 009139 232 --YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLA 309 (542)
Q Consensus 232 --~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~ 309 (542)
..+|+++|+++++.|+.+..+|+ |.++..||.+|+++++++++.+. .+|||||+|+|++++++.+++
T Consensus 69 ~~~~~gv~v~~v~~~~~~~~~~~y~-----~~d~~~r~~~f~~~~~~~~~~~~------~~pDiiH~h~w~~~~~~~~l~ 137 (466)
T PRK00654 69 HLEGDGVPVYLIDAPHLFDRPSGYG-----YPDNGERFAFFSWAAAEFAEGLD------PRPDIVHAHDWHTGLIPALLK 137 (466)
T ss_pred eEEcCCceEEEEeCHHHcCCCCCCC-----CcChHHHHHHHHHHHHHHHHhcC------CCCceEEECCcHHHHHHHHHH
Confidence 45899999999988877777776 56889999999999988876542 389999999999999998887
Q ss_pred HhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeec
Q 009139 310 SKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTV 389 (542)
Q Consensus 310 ~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~v 389 (542)
..+ .. .+.++|+|+|+|+..++|.++...+..++++...+.. ..++++..+++++.+++.||.|++|
T Consensus 138 ~~~-~~-~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ad~vitv 204 (466)
T PRK00654 138 EKY-WR-GYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHL-----------EGLEFYGQISFLKAGLYYADRVTTV 204 (466)
T ss_pred Hhh-hc-cCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCc-----------hhhhcCCcccHHHHHHHhcCcCeee
Confidence 543 11 1247899999999999888776666666665443221 0111223467889999999999999
Q ss_pred ChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCC
Q 009139 390 SKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCP 469 (542)
Q Consensus 390 S~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~ 469 (542)
|+.+++++.....|+|++..+..+.+|+.+|+||||++.|.|..++.++.+|+++++++|..+|+.+++++|++ +++.+
T Consensus 205 S~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~-~~~~~ 283 (466)
T PRK00654 205 SPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLP-DDDAP 283 (466)
T ss_pred CHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCC-CCCCc
Confidence 99999999876677788777777788999999999999999988877888898888888889999999999997 34789
Q ss_pred EEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 470 LIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 470 vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
+|+|+||+.++||++.|++|++++.+.+++|+|+|+|++.+++++++++++++++++++.||++++.+.+++
T Consensus 284 ~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~ 355 (466)
T PRK00654 284 LFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA 355 (466)
T ss_pred EEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh
Confidence 999999999999999999999999877899999999987788999999999998887789998887766654
No 6
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=385.98 Aligned_cols=365 Identities=36% Similarity=0.550 Sum_probs=301.3
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||++++.|+.|+.++||++.++..|+++|+++|++|.|+.|.|+... +.+.+..+....+.+...|..+.+...+.
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQ---KEWRDLLKVVGKFGVLKGGRAQLFIVKEY 77 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhh---hhhccccceeeEeeeeecccceEEEEEee
Confidence 899999999999999999999999999999999999999999997432 12222111111222222232333333333
Q ss_pred eeCC-eEEEEEcCCCCCCCC--CCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHH
Q 009139 232 YREG-VDWVFVDHPSYHRPG--NPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLL 308 (542)
Q Consensus 232 ~~~g-v~v~~i~~p~~~~~~--~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l 308 (542)
..++ ++++++++|.++.+. ..|+ |.|+.+||.+|+.++++....... . .+|||||+||||++++|.++
T Consensus 78 ~~~~~v~~~lid~~~~f~r~~~~~~~-----~~d~~~Rf~~F~~a~~~~~~~~~~---~-~~pDIvH~hDWqt~L~~~~l 148 (487)
T COG0297 78 GKDGGVDLYLIDNPALFKRPDSTLYG-----YYDNAERFAFFSLAAAELAPLGLI---S-WLPDIVHAHDWQTGLLPAYL 148 (487)
T ss_pred cccCCCcEEEecChhhcCccccccCC-----CCcHHHHHHHHHHHHHHHhhhcCC---C-CCCCEEEeecHHHHHHHHHH
Confidence 3233 999999988877652 3333 679999999999999887633210 1 37999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceee
Q 009139 309 ASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLT 388 (542)
Q Consensus 309 ~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~ 388 (542)
+..+. ....+|.|+|+||+.++|.++......+++|..++... .++.....+++|.++..||.|++
T Consensus 149 k~~~~---~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~-----------~l~~~~~~~~lK~gi~~ad~vtt 214 (487)
T COG0297 149 KQRYR---SGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASF-----------GLEFYGQISFLKGGLYYADAVTT 214 (487)
T ss_pred hhccc---ccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhc-----------eeeecCcchhhhhhheeccEEEE
Confidence 87531 12579999999999999999866667888987665421 12223457899999999999999
Q ss_pred cChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCC
Q 009139 389 VSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDC 468 (542)
Q Consensus 389 vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~ 468 (542)
||+.+++++....+|+|++.++.....++..|.||+|.+.|+|.+++.++.+|+.+....|..+|..|++++||+.+.+.
T Consensus 215 VSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~ 294 (487)
T COG0297 215 VSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPG 294 (487)
T ss_pred ECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCC
Confidence 99999999998889999999988778999999999999999999999999999999887899999999999999876788
Q ss_pred CEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhcC
Q 009139 469 PLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG 542 (542)
Q Consensus 469 ~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A~ 542 (542)
|++.+||||+.|||+|++++|+..+.+..+++|+.|.|++.+++.++.+++++++++...+||+++++|+++||
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~ag 368 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAG 368 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhc
Confidence 99999999999999999999999999888999999999999999999999999998888899999999999997
No 7
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=5.2e-43 Score=380.10 Aligned_cols=368 Identities=42% Similarity=0.653 Sum_probs=291.6
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||+|||+|+.|+.++||+++++..|+++|+++||+|+|++|.|+..... +.........+.+...+....+++++..
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDE---LRGQLLVLRLFGVPVGGRPEYVGVFELP 77 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhH---hccCeEEEEEEeeccCCceeEEEEEEEE
Confidence 6999999999998999999999999999999999999999998754211 1111111112233445566778888888
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
.+|++++++++|.+..+...|+.....|.++..++.+|+.++.++++.+ ..+|||||+|+|++++++.+++..+
T Consensus 78 ~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~------~~~pDviH~hd~~t~~~~~~l~~~~ 151 (476)
T cd03791 78 VDGVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRL------GWKPDIIHCHDWHTGLVPALLKEKY 151 (476)
T ss_pred eCCceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhc------CCCCcEEEECchHHHHHHHHHHHhh
Confidence 8999999999988766554443334467889999999999988887654 2489999999999999998887653
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChh-hhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSE-WYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.. ..+.++|+|+|+|+..++|.++...+...+.+.. .+ ..........+++++.++..||.|++||+
T Consensus 152 ~~-~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ad~v~~vS~ 219 (476)
T cd03791 152 AD-PFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELF-----------HIDGLEFYGQVNFLKAGIVYADAVTTVSP 219 (476)
T ss_pred cc-ccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchh-----------hhcccccCCcccHHHHHHHhcCcCeecCH
Confidence 21 1234799999999998888776554443333211 10 01112233456789999999999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
.+++++....+|+|+...+.....|+.+|+||||.+.|.|..++.+...++.++..+|..+|..+++++|++.+++.++|
T Consensus 220 ~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i 299 (476)
T cd03791 220 TYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLF 299 (476)
T ss_pred hHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEE
Confidence 99999987777788877776677899999999999999998877777777777777888999999999999755688999
Q ss_pred EEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
+|+||+.++||++.|++|++.+.+.+++|+|+|+|++.+++.++++++++.++++++.||++++.+.+++
T Consensus 300 ~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 369 (476)
T cd03791 300 GFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYA 369 (476)
T ss_pred EEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999877899999999988788999999988888898889999888776665
No 8
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.3e-42 Score=394.57 Aligned_cols=329 Identities=33% Similarity=0.496 Sum_probs=262.0
Q ss_pred CCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEE
Q 009139 148 TRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIA 227 (542)
Q Consensus 148 ~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 227 (542)
..++|||+||++|+.|+.++||+++++..|+++|+++||+|.||+|.|...... . .... .....+.++...++
T Consensus 584 ~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~--~---~~~~--~~~~~~~~~~~~~~ 656 (1036)
T PLN02316 584 KEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLS--H---VKDL--HYQRSYSWGGTEIK 656 (1036)
T ss_pred CCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchh--h---cccc--eEEEEeccCCEEEE
Confidence 457899999999999999999999999999999999999999999999642110 0 0001 11111222334567
Q ss_pred EEEeeeCCeEEEEEcCCC-CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHH
Q 009139 228 FFHEYREGVDWVFVDHPS-YHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPV 306 (542)
Q Consensus 228 ~~~~~~~gv~v~~i~~p~-~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~ 306 (542)
++....+|+++|+++++. ++.++.+|+ |+|+..||.+|+++++++++.+ . .+|||||+|+|+++++++
T Consensus 657 v~~~~~~GV~vyfl~~~~~~F~r~~~Yg-----~~Dd~~RF~~F~~Aale~l~~~---~---~~PDIIHaHDW~talva~ 725 (1036)
T PLN02316 657 VWFGKVEGLSVYFLEPQNGMFWAGCVYG-----CRNDGERFGFFCHAALEFLLQS---G---FHPDIIHCHDWSSAPVAW 725 (1036)
T ss_pred EEEEEECCcEEEEEeccccccCCCCCCC-----chhHHHHHHHHHHHHHHHHHhc---C---CCCCEEEECCChHHHHHH
Confidence 778888999999999763 665666776 5789999999999999987654 2 389999999999999998
Q ss_pred HHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCce
Q 009139 307 LLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRL 386 (542)
Q Consensus 307 ~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~V 386 (542)
+++..+...+ +.++|+|+|+|++.+++ +.++.++..||.|
T Consensus 726 llk~~~~~~~-~~~~p~V~TiHnl~~~~---------------------------------------n~lk~~l~~AD~V 765 (1036)
T PLN02316 726 LFKDHYAHYG-LSKARVVFTIHNLEFGA---------------------------------------NHIGKAMAYADKA 765 (1036)
T ss_pred HHHHhhhhhc-cCCCCEEEEeCCcccch---------------------------------------hHHHHHHHHCCEE
Confidence 8876543222 25789999999874321 1234567889999
Q ss_pred eecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCccccccccccccc-chhHHHHHHHHHHhCCCCC
Q 009139 387 LTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDL-SGKVQCKIALQKELGLPIR 465 (542)
Q Consensus 387 i~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~-~~k~~~k~~lr~~lGl~~~ 465 (542)
+|||+.+++++.... .+.....|+.+|+||||++.|.|.+++.++.+|++++. ++|..++..+|+++|++ .
T Consensus 766 iTVS~tya~EI~~~~-------~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~-~ 837 (1036)
T PLN02316 766 TTVSPTYSREVSGNS-------AIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLK-Q 837 (1036)
T ss_pred EeCCHHHHHHHHhcc-------CcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCC-c
Confidence 999999999987521 12234589999999999999999988888888998775 68888999999999997 3
Q ss_pred CCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCc-hhhHHHHHHHHHHc----CCCEEEEccCChhhhhhhh
Q 009139 466 PDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGD-PQFESWMRDTEATY----KDKYRGWVGFNVPISHRIT 540 (542)
Q Consensus 466 ~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~-~~~~~~l~~la~~~----~~~v~~~~Gy~~~l~~~~~ 540 (542)
++.|+|+|||||+++||+++|++|++.+++.+++|||+|+|+ ..+++.++++++++ +++|.++.+|++.++|.++
T Consensus 838 ~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iy 917 (1036)
T PLN02316 838 ADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIY 917 (1036)
T ss_pred ccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHH
Confidence 478999999999999999999999999887789999999995 45678888888854 5678777789999999888
Q ss_pred cC
Q 009139 541 AG 542 (542)
Q Consensus 541 A~ 542 (542)
|+
T Consensus 918 aa 919 (1036)
T PLN02316 918 AG 919 (1036)
T ss_pred Hh
Confidence 75
No 9
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=8.3e-33 Score=274.90 Aligned_cols=240 Identities=36% Similarity=0.560 Sum_probs=171.6
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhccc----CceeEEeecCCceeEEE
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDL----GCCMKICCFGGEQEIAF 228 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~----~~~~~v~~~g~~~~~~~ 228 (542)
||+||++|+.|+.++||+++++..|+++|+++||+|.||+|.|+.............+. ...+.+.. ..++++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~v 77 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV---WYEVRV 77 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-------EEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc---ceEEEE
Confidence 79999999999999999999999999999999999999999985321100000000000 00111111 156677
Q ss_pred EEeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHH
Q 009139 229 FHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLL 308 (542)
Q Consensus 229 ~~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l 308 (542)
++...+|+++++++++.|+.+..+|++...+|+|+..||.+|+++++++++.+. .+|||||+|||+++++|.++
T Consensus 78 ~~~~~~~v~v~~i~~~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~------~~pDIIH~hDW~tal~p~~l 151 (245)
T PF08323_consen 78 YRYPVDGVPVYFIDNPEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLG------WKPDIIHCHDWHTALAPLYL 151 (245)
T ss_dssp EEEEETTEEEEEEESHHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-------S-SEEEEECGGGTTHHHHH
T ss_pred EEEEcCCccEEEecChhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhC------CCCCEEEecCchHHHHHHHh
Confidence 788889999999999987777779987666789999999999999999987652 38999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceee
Q 009139 309 ASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLT 388 (542)
Q Consensus 309 ~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~ 388 (542)
+..+...+.+.++|+|+|+||+.++|.++...+..+|+|...+.. ...++....+++++.++..||.|+|
T Consensus 152 k~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~----------~~~~~~~~~in~lk~gi~~AD~v~T 221 (245)
T PF08323_consen 152 KERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQN----------LDEYEFYGQINFLKAGIVYADKVTT 221 (245)
T ss_dssp HHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-S----------TTTTEETTEEEHHHHHHHHSSEEEE
T ss_pred ccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcc----------ccccccccccCHHHHHHHhcCEeee
Confidence 887654455568999999999999999987766677777543311 1222345567899999999999999
Q ss_pred cChhhHHHHHhhccCCchhhhhh
Q 009139 389 VSKGYSWEITTVEGGYGLHEILS 411 (542)
Q Consensus 389 vS~~~~~~l~~~~~g~Gl~~~l~ 411 (542)
||+.|++++.+..+|.||+.+|+
T Consensus 222 VS~~Ya~Ei~~~~~g~GL~~~l~ 244 (245)
T PF08323_consen 222 VSPTYAREIQTPEFGEGLEGLLR 244 (245)
T ss_dssp SSHHHHHHTTSHHHHTT-HHHHH
T ss_pred CCHHHHHHHhCcccCCChHHHhc
Confidence 99999999999888889988764
No 10
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.97 E-value=5.7e-30 Score=282.00 Aligned_cols=369 Identities=19% Similarity=0.198 Sum_probs=268.8
Q ss_pred EEEEeccc-----CCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcc-----c----chhhh----hcc--c--
Q 009139 154 IVFVTAEA-----APYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAA-----D----ENFTL----AKD--L-- 211 (542)
Q Consensus 154 Il~Vt~e~-----~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~-----~----~~~~~----~~~--~-- 211 (542)
|+++|.|| .| ...||+|+......++++.+|...+.++..|..+... + +.|.. ... .
T Consensus 1 ~ayf~~E~g~~~~~p-~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLP-IYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 46677765 35 3579999999999999999999999999887654320 0 00000 000 0
Q ss_pred -----CceeEEeecCCceeEEEEEeeeCCeEEEEEcCCC----CCCCC---CCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 009139 212 -----GCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS----YHRPG---NPYGDINGAFGDNQFRYTLLCYAACEAPL 279 (542)
Q Consensus 212 -----~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~----~~~~~---~~y~~~~~~~~~~~~r~~~~~~a~~~~~~ 279 (542)
...+.|+..|....+++|....+++++++++.+. +..+. .+|+.+ ..++..++.+|+.+.++.++
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~D---~~~R~~Qe~fl~~a~l~~l~ 156 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGD---KEMRIAQEIVLGIGGVRALR 156 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 0136677778778889998888899999999774 33333 357532 22333444899999988876
Q ss_pred ccCCCCCCCCCccEEEECCCchhHHHHHHHHhcCCCCC-------CCCCcEEEEecCCCcCCC--Cchhhhh--------
Q 009139 280 VLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGV-------YKDARSILVIHNLSHQGV--EPAATYK-------- 342 (542)
Q Consensus 280 ~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~~~~~~-------~~~ipvV~TiH~~~~~g~--~~~~~~~-------- 342 (542)
.+ + .+|||||+|+||+++++..+.......+. ..+..+|+|+|++.++|. +|...+.
T Consensus 157 ~l---~---~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~ 230 (601)
T TIGR02094 157 AL---G---IDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAA 230 (601)
T ss_pred Hc---C---CCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhh
Confidence 65 2 38999999999999999875321100000 014679999999999997 7766553
Q ss_pred hcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeC
Q 009139 343 NLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITN 422 (542)
Q Consensus 343 ~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpN 422 (542)
.+|++...+..++..++ ..+..+++++.++..||.|.+||+.+++-... ..+ .+.+.+.....++..|.|
T Consensus 231 ~~gl~~~~~~~~~~~~~--------~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~-l~~-~l~~~~~~~~~~i~gItN 300 (601)
T TIGR02094 231 NLGLPREQLLALGRENP--------DDPEPFNMTVLALRLSRIANGVSKLHGEVSRK-MWQ-FLYPGYEEEEVPIGYVTN 300 (601)
T ss_pred HhCCCHHHHHhhhhhcc--------CccCceeHHHHHHHhCCeeeeecHHHHHHHHH-HHH-hhhhhcccccCCccceeC
Confidence 35666554433222110 00245789999999999999999998873321 110 011112233457999999
Q ss_pred CCcCCCcCCCCcccccccccccc---------------------c-chhHHHHHHHHH---------------------H
Q 009139 423 GIDITEWNPSSDEHIASHYSIDD---------------------L-SGKVQCKIALQK---------------------E 459 (542)
Q Consensus 423 GVD~~~f~p~~~~~~~~~~~~~d---------------------~-~~k~~~k~~lr~---------------------~ 459 (542)
|||+..|.|.++..+..+|..++ + ++|..+|.+|.+ +
T Consensus 301 GId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~ 380 (601)
T TIGR02094 301 GVHNPTWVAPELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMA 380 (601)
T ss_pred CccccccCCHHHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhh
Confidence 99999999988888877777665 3 688899999887 5
Q ss_pred hCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc------CCcEEEEEecCchh------hHHHHHHHHHH--cCCCE
Q 009139 460 LGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA------DDIQFVMLGSGDPQ------FESWMRDTEAT--YKDKY 525 (542)
Q Consensus 460 lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~------~dv~LVIvG~G~~~------~~~~l~~la~~--~~~~v 525 (542)
+|++.+++.++++|++|++.+||++++++++.++.+ .+++||++|+|.+. +++.+.+++++ ++++|
T Consensus 381 ~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv 460 (601)
T TIGR02094 381 TDRFLDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRI 460 (601)
T ss_pred hccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCE
Confidence 777677899999999999999999999999998863 47999999999875 89999999988 88999
Q ss_pred EEEccCChhhhhhhhcC
Q 009139 526 RGWVGFNVPISHRITAG 542 (542)
Q Consensus 526 ~~~~Gy~~~l~~~~~A~ 542 (542)
+++.+|++.++|+|+||
T Consensus 461 ~f~~~Yd~~lA~~i~aG 477 (601)
T TIGR02094 461 VFLENYDINLARYLVSG 477 (601)
T ss_pred EEEcCCCHHHHHHHhhh
Confidence 99999999999999997
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.94 E-value=1.8e-25 Score=250.48 Aligned_cols=364 Identities=21% Similarity=0.275 Sum_probs=255.8
Q ss_pred EEEEEecccC-----CCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcc-----c----chhhh----hccc---
Q 009139 153 NIVFVTAEAA-----PYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAA-----D----ENFTL----AKDL--- 211 (542)
Q Consensus 153 kIl~Vt~e~~-----P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~-----~----~~~~~----~~~~--- 211 (542)
-|+++|.||. | ...||+|+...+..++++.+|..++-|...|..+... + +.|.. .+..
T Consensus 87 ~~aYFs~E~gl~~~lp-iYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLP-IYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 4559999863 5 3579999999999999999999999999887654320 0 00110 0000
Q ss_pred ------CceeEEeecCCceeEEEEEeeeCCeEEEEEcCCCC----CCCC---CCCCCCCCCCCChHHH---HHHHHHHHH
Q 009139 212 ------GCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSY----HRPG---NPYGDINGAFGDNQFR---YTLLCYAAC 275 (542)
Q Consensus 212 ------~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~~----~~~~---~~y~~~~~~~~~~~~r---~~~~~~a~~ 275 (542)
...+.|...|....+++|+..+.++++|+++.+.+ ..+. .+|+. |+..| +.+|+.+.+
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~------D~~~Rl~Qe~~Lg~agl 239 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG------DQETRIQQEILLGIGGV 239 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC------cHHHHHHHHHHHHHHHH
Confidence 11456777788888899998888999999998763 2222 35763 56677 588999988
Q ss_pred HhccccCCCCCCCCCccEEEECCCchhHHHH-----HHHHh-cCCCC--CCCCCcEEEEecCCCcCC--CCchhhhh---
Q 009139 276 EAPLVLPLGGFTYGEKCIFLVNDWHAGLVPV-----LLASK-YRPHG--VYKDARSILVIHNLSHQG--VEPAATYK--- 342 (542)
Q Consensus 276 ~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~-----~l~~~-~~~~~--~~~~ipvV~TiH~~~~~g--~~~~~~~~--- 342 (542)
+.++.+ ++ +|||||+|+||+++++. ++... +.... ...+..+|+|+|+..++| .+|...+.
T Consensus 240 ~~Lr~l---g~---~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~ 313 (778)
T cd04299 240 RALRAL---GI---KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYF 313 (778)
T ss_pred HHHHHh---CC---CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHh
Confidence 887665 23 79999999999999988 44321 00000 012467999999999999 88876653
Q ss_pred -----hcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChhh---HHHHHhh-ccCCchhhhhhcC
Q 009139 343 -----NLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGY---SWEITTV-EGGYGLHEILSSR 413 (542)
Q Consensus 343 -----~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~---~~~l~~~-~~g~Gl~~~l~~~ 413 (542)
.+|++...+..++...+. +....+++.+.+++.|+.|.+||+-. .+++... ..+++ ..
T Consensus 314 ~~~~~~lgl~~~~~~~lg~e~~~-------~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p------~~ 380 (778)
T cd04299 314 GPYARELGLSRDRFLALGRENPG-------DDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFP------VE 380 (778)
T ss_pred hHHHHHcCCCHHHHhhhcccccc-------CccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCC------cc
Confidence 256665544333221100 01235789999999999999999987 3443321 11111 12
Q ss_pred CccEEEEeCCCcCCCcC-CCCccccccccc------------------ccc---cchhHHHHHHHHHHh-----------
Q 009139 414 KSVLNGITNGIDITEWN-PSSDEHIASHYS------------------IDD---LSGKVQCKIALQKEL----------- 460 (542)
Q Consensus 414 ~~ki~vIpNGVD~~~f~-p~~~~~~~~~~~------------------~~d---~~~k~~~k~~lr~~l----------- 460 (542)
..++..|.||||+..|. |..++.+....+ ..| .+.|..+|++|.+..
T Consensus 381 ~~~i~~ITNGVh~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~ 460 (778)
T cd04299 381 EVPIGHVTNGVHVPTWVAPEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRR 460 (778)
T ss_pred cCceeceeCCcchhhhcCHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45799999999999998 766555433221 112 236777777765443
Q ss_pred ----------CCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc------CCcEEEEEecCch------hhHHHHHHHH
Q 009139 461 ----------GLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA------DDIQFVMLGSGDP------QFESWMRDTE 518 (542)
Q Consensus 461 ----------Gl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~------~dv~LVIvG~G~~------~~~~~l~~la 518 (542)
+.+.+++.++|+|++|+..+||++++++.++++.+ .+++||++|++.+ .+.+.+.+++
T Consensus 461 g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a 540 (778)
T cd04299 461 GASAEEIGEADDVLDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFS 540 (778)
T ss_pred CCchhhhhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHH
Confidence 44456788899999999999999999999888843 4799999999874 4455888888
Q ss_pred H--HcCCCEEEEccCChhhhhhhhcC
Q 009139 519 A--TYKDKYRGWVGFNVPISHRITAG 542 (542)
Q Consensus 519 ~--~~~~~v~~~~Gy~~~l~~~~~A~ 542 (542)
+ +++++|+++.+|+..++++|.||
T Consensus 541 ~~p~~~~kVvfle~Yd~~lA~~LvaG 566 (778)
T cd04299 541 RRPEFRGRIVFLEDYDMALARHLVQG 566 (778)
T ss_pred hCcCCCCcEEEEcCCCHHHHHHHHhh
Confidence 8 67789998889999999999987
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.93 E-value=3.5e-24 Score=228.42 Aligned_cols=293 Identities=19% Similarity=0.213 Sum_probs=186.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec--CCCCCcccchhhhhcccCceeEEeecCCceeEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR--YFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFF 229 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 229 (542)
|||++++..|+|. .||++.++.+|+++|+++||+|+|+|+. ++.... ...+. +. ...
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~-~~~~~--------------~~----~~~ 59 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRV-GEGYS--------------AW----RYR 59 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCC-Ccccc--------------cc----cce
Confidence 8999999999894 6999999999999999999999999965 222100 00000 00 001
Q ss_pred EeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHh-ccccCCCCCCCCCccEEEECCCch--hHHHH
Q 009139 230 HEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEA-PLVLPLGGFTYGEKCIFLVNDWHA--GLVPV 306 (542)
Q Consensus 230 ~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~-~~~l~~~~f~~~~pDIIH~H~~~~--~~~~~ 306 (542)
.+..+|+++++++...... ..+ + ........|....... .+.+ ..+|||||+|.+.. ..++.
T Consensus 60 ~~~~~~i~v~r~~~~~~~~---~~~-----~-~~~~~~~~~~~~~~~~~~~~~------~~~~Div~~~~p~~~~~~~~~ 124 (412)
T PRK10307 60 RESEGGVTVWRCPLYVPKQ---PSG-----L-KRLLHLGSFALSSFFPLLAQR------RWRPDRVIGVVPTLFCAPGAR 124 (412)
T ss_pred eeecCCeEEEEccccCCCC---ccH-----H-HHHHHHHHHHHHHHHHHhhcc------CCCCCEEEEeCCcHHHHHHHH
Confidence 2345789998875321110 000 0 0011111122222211 1111 14899999997543 22333
Q ss_pred HHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCC-hhhhcccccccccccccccccchhHHHHHHHHHHhcCc
Q 009139 307 LLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLP-SEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADR 385 (542)
Q Consensus 307 ~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~ 385 (542)
+++.. .++|+|+++|+.. +.... ..+.. ..++. .....+++.+++.+|.
T Consensus 125 ~~~~~-------~~~~~v~~~~d~~-----~~~~~-~~~~~~~~~~~-----------------~~~~~~~~~~~~~ad~ 174 (412)
T PRK10307 125 LLARL-------SGARTWLHIQDYE-----VDAAF-GLGLLKGGKVA-----------------RLATAFERSLLRRFDN 174 (412)
T ss_pred HHHHh-------hCCCEEEEeccCC-----HHHHH-HhCCccCcHHH-----------------HHHHHHHHHHHhhCCE
Confidence 33332 4789999999752 11100 11110 00100 0112367778899999
Q ss_pred eeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCC
Q 009139 386 LLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIR 465 (542)
Q Consensus 386 Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~ 465 (542)
|+++|+.+.+.+... | .+..++.+||||+|.+.|.|.... .+..++++++++
T Consensus 175 ii~~S~~~~~~~~~~----~------~~~~~i~vi~ngvd~~~~~~~~~~----------------~~~~~~~~~~~~-- 226 (412)
T PRK10307 175 VSTISRSMMNKAREK----G------VAAEKVIFFPNWSEVARFQPVADA----------------DVDALRAQLGLP-- 226 (412)
T ss_pred EEecCHHHHHHHHHc----C------CCcccEEEECCCcCHhhcCCCCcc----------------chHHHHHHcCCC--
Confidence 999999999887642 1 346789999999999888764321 134577888886
Q ss_pred CCCCEEEEEccCccccCHHHHHHHHHhhhc-CCcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccC--Chhhhhhhhc
Q 009139 466 PDCPLIGFIGRLDYQKGIDLIRLAAPEILA-DDIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGF--NVPISHRITA 541 (542)
Q Consensus 466 ~~~~vIlfVGRl~~~KGid~LieA~~~L~~-~dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy--~~~l~~~~~A 541 (542)
++.++|+|+||+.++||++.|++|++.+.+ .+++|+|+|+|+. .+++++++++++ ++| .|+|| .+++..++.+
T Consensus 227 ~~~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~~v-~f~G~~~~~~~~~~~~~ 303 (412)
T PRK10307 227 DGKKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGG--KARLEKMAQCRGLPNV-HFLPLQPYDRLPALLKM 303 (412)
T ss_pred CCCEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChh--HHHHHHHHHHcCCCce-EEeCCCCHHHHHHHHHh
Confidence 467899999999999999999999998854 3799999999973 677888887654 354 68898 3566666654
No 13
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.90 E-value=1.1e-21 Score=212.99 Aligned_cols=271 Identities=15% Similarity=0.203 Sum_probs=170.8
Q ss_pred CCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEE
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAF 228 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 228 (542)
+++|||++++.. .|+...||++.++.+|+++|.++||+|+|+|+..... ..
T Consensus 56 ~~~mrI~~~~~~-~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~----~~------------------------ 106 (465)
T PLN02871 56 SRPRRIALFVEP-SPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP----QE------------------------ 106 (465)
T ss_pred CCCceEEEEECC-cCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC----cc------------------------
Confidence 678999999853 3434579999999999999999999999999753210 00
Q ss_pred EEeeeCCeEEEEEc---CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHH
Q 009139 229 FHEYREGVDWVFVD---HPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVP 305 (542)
Q Consensus 229 ~~~~~~gv~v~~i~---~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~ 305 (542)
..+++++.+. .|.+.. ..+ .+. +...+.+.++ ..+|||||+|.......+
T Consensus 107 ----~~g~~v~~~~~~~~~~~~~--~~~------------~~~-~~~~l~~~i~--------~~kpDiIh~~~~~~~~~~ 159 (465)
T PLN02871 107 ----FHGAKVIGSWSFPCPFYQK--VPL------------SLA-LSPRIISEVA--------RFKPDLIHASSPGIMVFG 159 (465)
T ss_pred ----ccCceeeccCCcCCccCCC--cee------------ecc-CCHHHHHHHH--------hCCCCEEEECCCchhHHH
Confidence 1223332211 111100 000 000 0011222221 238999999985433222
Q ss_pred HHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCc
Q 009139 306 VLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADR 385 (542)
Q Consensus 306 ~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~ 385 (542)
.++..+. .++|+|+|+|+.... ..+ .... .+.. .....+++..++.+|.
T Consensus 160 ~~~~ak~------~~ip~V~~~h~~~~~-~~~-----~~~~--~~~~-----------------~~~~~~~r~~~~~ad~ 208 (465)
T PLN02871 160 ALFYAKL------LCVPLVMSYHTHVPV-YIP-----RYTF--SWLV-----------------KPMWDIIRFLHRAADL 208 (465)
T ss_pred HHHHHHH------hCCCEEEEEecCchh-hhh-----cccc--hhhH-----------------HHHHHHHHHHHhhCCE
Confidence 2222221 479999999975210 000 0000 0000 0011234566788999
Q ss_pred eeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCC
Q 009139 386 LLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIR 465 (542)
Q Consensus 386 Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~ 465 (542)
|+++|+.+.+.+.... . .+..++.+||||||.+.|.|..+ +..+++++... .
T Consensus 209 ii~~S~~~~~~l~~~~----~-----~~~~kv~vi~nGvd~~~f~p~~~------------------~~~~~~~~~~~-~ 260 (465)
T PLN02871 209 TLVTSPALGKELEAAG----V-----TAANRIRVWNKGVDSESFHPRFR------------------SEEMRARLSGG-E 260 (465)
T ss_pred EEECCHHHHHHHHHcC----C-----CCcCeEEEeCCccCccccCCccc------------------cHHHHHHhcCC-C
Confidence 9999999988876421 1 23578999999999999987532 12345555332 2
Q ss_pred CCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCC--hhhhhhhhc
Q 009139 466 PDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFN--VPISHRITA 541 (542)
Q Consensus 466 ~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~--~~l~~~~~A 541 (542)
+++++|+|+||+.++||++.|+++++++ .+++|+|+|+|+ +.+.++++++.. +| .|+||. +++..++.+
T Consensus 261 ~~~~~i~~vGrl~~~K~~~~li~a~~~~--~~~~l~ivG~G~--~~~~l~~~~~~~--~V-~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 261 PEKPLIVYVGRLGAEKNLDFLKRVMERL--PGARLAFVGDGP--YREELEKMFAGT--PT-VFTGMLQGDELSQAYAS 331 (465)
T ss_pred CCCeEEEEeCCCchhhhHHHHHHHHHhC--CCcEEEEEeCCh--HHHHHHHHhccC--Ce-EEeccCCHHHHHHHHHH
Confidence 3678999999999999999999999887 489999999997 467788877643 45 588996 678877754
No 14
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.90 E-value=6.5e-22 Score=210.04 Aligned_cols=284 Identities=17% Similarity=0.221 Sum_probs=181.6
Q ss_pred EEEEecccCCCc-----CCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEE
Q 009139 154 IVFVTAEAAPYS-----KTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAF 228 (542)
Q Consensus 154 Il~Vt~e~~P~~-----~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 228 (542)
|++++....|.. ..||+++++.+|+++|+++||+|+|+|+....... ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~--~~------------------------ 54 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQP--PV------------------------ 54 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCC--Cc------------------------
Confidence 567777777732 25999999999999999999999999976432110 00
Q ss_pred EEeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHH-HhccccCCCCCCCCCccEEEECCCchhHHHH
Q 009139 229 FHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQF-RYTLLCYAAC-EAPLVLPLGGFTYGEKCIFLVNDWHAGLVPV 306 (542)
Q Consensus 229 ~~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~-r~~~~~~a~~-~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~ 306 (542)
.+..+|+++++++.+.+... . . .... .+..|....+ ...+.. ..+|||||+|.+..++++.
T Consensus 55 -~~~~~~~~v~~~~~~~~~~~----~-----~-~~~~~~~~~~~~~~~~~~~~~~------~~~~Diih~h~~~~~~~~~ 117 (405)
T TIGR03449 55 -VEVAPGVRVRNVVAGPYEGL----D-----K-EDLPTQLCAFTGGVLRAEARHE------PGYYDLIHSHYWLSGQVGW 117 (405)
T ss_pred -cccCCCcEEEEecCCCcccC----C-----H-HHHHHHHHHHHHHHHHHHhhcc------CCCCCeEEechHHHHHHHH
Confidence 11236788887754332110 0 0 0000 1111222222 222211 2379999999987766666
Q ss_pred HHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCce
Q 009139 307 LLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRL 386 (542)
Q Consensus 307 ~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~V 386 (542)
+++.. .++|+|+|+|+..... ...+.....+.. ......++..++.+|.|
T Consensus 118 ~~~~~-------~~~p~v~t~h~~~~~~---~~~~~~~~~~~~--------------------~~~~~~e~~~~~~~d~v 167 (405)
T TIGR03449 118 LLRDR-------WGVPLVHTAHTLAAVK---NAALADGDTPEP--------------------EARRIGEQQLVDNADRL 167 (405)
T ss_pred HHHHh-------cCCCEEEeccchHHHH---HHhccCCCCCch--------------------HHHHHHHHHHHHhcCeE
Confidence 55542 4789999999862100 000000000000 00112345678899999
Q ss_pred eecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCC
Q 009139 387 LTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRP 466 (542)
Q Consensus 387 i~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~ 466 (542)
+++|+...+.+.... ..+.+++.+||||+|.+.|.|.. +...+++++++ +
T Consensus 168 i~~s~~~~~~~~~~~---------~~~~~ki~vi~ngvd~~~~~~~~-------------------~~~~~~~~~~~--~ 217 (405)
T TIGR03449 168 IANTDEEARDLVRHY---------DADPDRIDVVAPGADLERFRPGD-------------------RATERARLGLP--L 217 (405)
T ss_pred EECCHHHHHHHHHHc---------CCChhhEEEECCCcCHHHcCCCc-------------------HHHHHHhcCCC--C
Confidence 999998888775422 13467899999999998886642 23467788885 3
Q ss_pred CCCEEEEEccCccccCHHHHHHHHHhhhc--CC--cEEEEEecCc--h-hhHHHHHHHHHHcC--CCEEEEccC--Chhh
Q 009139 467 DCPLIGFIGRLDYQKGIDLIRLAAPEILA--DD--IQFVMLGSGD--P-QFESWMRDTEATYK--DKYRGWVGF--NVPI 535 (542)
Q Consensus 467 ~~~vIlfVGRl~~~KGid~LieA~~~L~~--~d--v~LVIvG~G~--~-~~~~~l~~la~~~~--~~v~~~~Gy--~~~l 535 (542)
++++|+|+||+.++||++.|++|++.+.+ .+ ++|+|+|.+. . ...+.+++++++++ +++ .|+|+ ++++
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v-~~~g~~~~~~~ 296 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRV-RFLPPRPPEEL 296 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceE-EECCCCCHHHH
Confidence 67899999999999999999999999865 23 9999999632 1 34677888887764 345 68898 4667
Q ss_pred hhhhhc
Q 009139 536 SHRITA 541 (542)
Q Consensus 536 ~~~~~A 541 (542)
..++.+
T Consensus 297 ~~~l~~ 302 (405)
T TIGR03449 297 VHVYRA 302 (405)
T ss_pred HHHHHh
Confidence 766654
No 15
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.90 E-value=2.8e-21 Score=208.20 Aligned_cols=294 Identities=16% Similarity=0.091 Sum_probs=169.0
Q ss_pred CCChHhHHHhHHHHHHHHCCC--eEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEeeeCCeEEEEEcC
Q 009139 166 KTGGLGDVCGSLPVALAARGH--RVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDH 243 (542)
Q Consensus 166 ~~GGl~~~v~~La~~L~~~Gh--eV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~ 243 (542)
..||+++++.+|+++|+++|| +|+|+|..++.+... ..|.. .+.+..+|+++++++.
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~-~~~~~--------------------~~~~~~~gv~v~r~~~ 82 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVS-PDYAQ--------------------PIERIAPGARIVRLPF 82 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCC-CccCC--------------------CeeEeCCCcEEEEecC
Confidence 469999999999999999997 999999765432100 01110 0123458999998854
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcE
Q 009139 244 PSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARS 323 (542)
Q Consensus 244 p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipv 323 (542)
... .+.. ..+-......+...+.+.++.. ..+|||||+|++.+++++.+++.. .++|+
T Consensus 83 ~~~-----~~~~----~~~~~~~~~~~~~~l~~~~~~~------~~~~DvIH~h~~~~~~~~~~~~~~-------~~~p~ 140 (439)
T TIGR02472 83 GPR-----RYLR----KELLWPYLDELADNLLQHLRQQ------GHLPDLIHAHYADAGYVGARLSRL-------LGVPL 140 (439)
T ss_pred CCC-----CCcC----hhhhhhhHHHHHHHHHHHHHHc------CCCCCEEEEcchhHHHHHHHHHHH-------hCCCE
Confidence 221 0110 0000001122333333333221 137999999998887777666543 47899
Q ss_pred EEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccC
Q 009139 324 ILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGG 403 (542)
Q Consensus 324 V~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g 403 (542)
|+|.|+..... ...+...+.....+.. .......+..++..++.+|.||++|+....+......
T Consensus 141 V~t~H~~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~- 204 (439)
T TIGR02472 141 IFTGHSLGREK---RRRLLAAGLKPQQIEK------------QYNISRRIEAEEETLAHASLVITSTHQEIEEQYALYD- 204 (439)
T ss_pred EEecccccchh---hhhcccCCCChhhhhh------------hcchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhcc-
Confidence 99999752110 0000000110000000 0001122345777899999999999765444322111
Q ss_pred CchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCH
Q 009139 404 YGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGI 483 (542)
Q Consensus 404 ~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGi 483 (542)
..+++|+.+||||||++.|.|..... .....+..+ ++++.+ ++.++|+|+||+.++||+
T Consensus 205 -------~~~~~ki~vIpnGvd~~~f~~~~~~~-----------~~~~~~~~~-~~~~~~--~~~~~i~~vGrl~~~Kg~ 263 (439)
T TIGR02472 205 -------SYQPERMQVIPPGVDLSRFYPPQSSE-----------ETSEIDNLL-APFLKD--PEKPPILAISRPDRRKNI 263 (439)
T ss_pred -------CCCccceEEECCCcChhhcCCCCccc-----------cchhHHHHH-Hhhccc--cCCcEEEEEcCCcccCCH
Confidence 13568999999999999998753210 001122223 334443 367899999999999999
Q ss_pred HHHHHHHHhhh--cCCcEEE-EEecCch--h-------hHHHHHHHHHHc--CCCEEEEccC--Chhhhhhhh
Q 009139 484 DLIRLAAPEIL--ADDIQFV-MLGSGDP--Q-------FESWMRDTEATY--KDKYRGWVGF--NVPISHRIT 540 (542)
Q Consensus 484 d~LieA~~~L~--~~dv~LV-IvG~G~~--~-------~~~~l~~la~~~--~~~v~~~~Gy--~~~l~~~~~ 540 (542)
+.|++|++.+. ..+.+++ |+|+|+. . +.+.++.++.++ .++| .|+|+ .+++..++.
T Consensus 264 ~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V-~f~g~~~~~~~~~~~~ 335 (439)
T TIGR02472 264 PSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKV-AYPKHHRPDDVPELYR 335 (439)
T ss_pred HHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceE-EecCCCCHHHHHHHHH
Confidence 99999998642 2234444 5788753 1 122344445543 4555 58886 567776664
No 16
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.90 E-value=7.8e-22 Score=209.60 Aligned_cols=262 Identities=20% Similarity=0.270 Sum_probs=170.8
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++|+..|.|. .||+++++.+|+++|+++||+|+|+|+.++.... . ...
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~--~--------------------------~~~ 50 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVG--I--------------------------RYL 50 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCC--c--------------------------ccc
Confidence 799999999994 6999999999999999999999999976432100 0 012
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHH-HHHHHh
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVP-VLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~-~~l~~~ 311 (542)
.++++++.++........ .. . .... ....+.+. + .+.+|||||+|++...+.. .++..+
T Consensus 51 ~~~i~v~~~p~~~~~~~~-~~-------~-~~~~---~~~~l~~~---~-----~~~~~DiIh~~~~~~~~~~~~~~~~~ 110 (398)
T cd03796 51 TNGLKVYYLPFVVFYNQS-TL-------P-TFFG---TFPLLRNI---L-----IRERITIVHGHQAFSALAHEALLHAR 110 (398)
T ss_pred cCceeEEEecceeccCCc-cc-------c-chhh---hHHHHHHH---H-----HhcCCCEEEECCCCchHHHHHHHHhh
Confidence 356777776432211100 00 0 0001 11111112 1 1248999999987654332 222221
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
..++|+|+|.|+... ... . ...+. ..+.+..++.+|.++++|+
T Consensus 111 ------~~~~~~v~t~h~~~~--~~~---~-----~~~~~---------------------~~~~~~~~~~~d~ii~~s~ 153 (398)
T cd03796 111 ------TMGLKTVFTDHSLFG--FAD---A-----SSIHT---------------------NKLLRFSLADVDHVICVSH 153 (398)
T ss_pred ------hcCCcEEEEeccccc--ccc---h-----hhHHh---------------------hHHHHHhhccCCEEEEecH
Confidence 157999999998521 000 0 00000 1133455678999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
...+.+.... ..+.+++.+||||+|.+.|.|..+. ..+++++|
T Consensus 154 ~~~~~~~~~~---------~~~~~k~~vi~ngvd~~~f~~~~~~----------------------------~~~~~~~i 196 (398)
T cd03796 154 TSKENTVLRA---------SLDPERVSVIPNAVDSSDFTPDPSK----------------------------RDNDKITI 196 (398)
T ss_pred hHhhHHHHHh---------CCChhhEEEEcCccCHHHcCCCccc----------------------------CCCCceEE
Confidence 9877553221 1246789999999999888765321 12367899
Q ss_pred EEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccC--Chhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGF--NVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy--~~~l~~~~~A 541 (542)
+|+||+.++||++.|++|++.+.+ .+++|+|+|+|+. .+.++++++++. ++| .|+|+ ++++..++.+
T Consensus 197 ~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v-~~~G~~~~~~~~~~l~~ 269 (398)
T cd03796 197 VVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK--RILLEEMREKYNLQDRV-ELLGAVPHERVRDVLVQ 269 (398)
T ss_pred EEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch--HHHHHHHHHHhCCCCeE-EEeCCCCHHHHHHHHHh
Confidence 999999999999999999998864 4899999999974 667888877764 445 57898 4677776654
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.89 E-value=3.1e-21 Score=203.11 Aligned_cols=273 Identities=21% Similarity=0.161 Sum_probs=176.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||++|+..|+|. ..||+++++.+|+++|+++ |+|+|++......
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--------------------------------- 45 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--------------------------------- 45 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh---------------------------------
Confidence 8999999998884 3599999999999999987 8888887542110
Q ss_pred eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHh
Q 009139 232 YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASK 311 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~ 311 (542)
..++++++.+..+.... .+. ..+. .+..... ... ...++||||+|.+.+++.+.+++..
T Consensus 46 ~~~~~~~~~~~~~~~~~---~~~--------~~~~--~~~~~~~-~~~-------~~~~~divh~~~~~~~~~~~~~~~~ 104 (388)
T TIGR02149 46 DSEGLTVKGYRPWSELK---EAN--------KALG--TFSVDLA-MAN-------DPVDADVVHSHTWYTFLAGHLAKKL 104 (388)
T ss_pred cCCCeEEEEecChhhcc---chh--------hhhh--hhhHHHH-Hhh-------CCCCCCeEeecchhhhhHHHHHHHh
Confidence 12345555443221000 000 0011 1111111 111 1237899999998776665544332
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.++|+|+|+|+......+.. ...+... .....+++..++.+|.|+++|+
T Consensus 105 -------~~~p~v~~~h~~~~~~~~~~---~~~~~~~---------------------~~~~~~~~~~~~~ad~vi~~S~ 153 (388)
T TIGR02149 105 -------YDKPLVVTAHSLEPLRPWKE---EQLGGGY---------------------KLSSWAEKTAIEAADRVIAVSG 153 (388)
T ss_pred -------cCCCEEEEeecccccccccc---cccccch---------------------hHHHHHHHHHHhhCCEEEEccH
Confidence 47999999998732111100 0000000 0011245677889999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
.+++.+.....+ ....++.+||||+|.+.|.|.. +..++++++++ ++.++|
T Consensus 154 ~~~~~~~~~~~~--------~~~~~i~vi~ng~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~i 204 (388)
T TIGR02149 154 GMREDILKYYPD--------LDPEKVHVIYNGIDTKEYKPDD-------------------GNVVLDRYGID--RSRPYI 204 (388)
T ss_pred HHHHHHHHHcCC--------CCcceEEEecCCCChhhcCCCc-------------------hHHHHHHhCCC--CCceEE
Confidence 998887653211 2357899999999998887642 34567888885 477899
Q ss_pred EEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCc--hhhHHHHHHHHHHcCC---CEEEEccC--Chhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGD--PQFESWMRDTEATYKD---KYRGWVGF--NVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~--~~~~~~l~~la~~~~~---~v~~~~Gy--~~~l~~~~~A 541 (542)
+|+||+.++||++.|++|++++. .+++++++|.|+ +.+.+.++++..++.. ++.++.|+ .+++..++.+
T Consensus 205 ~~~Grl~~~Kg~~~li~a~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 205 LFVGRITRQKGVPHLLDAVHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred EEEcccccccCHHHHHHHHHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 99999999999999999999885 478999988764 3456677777666542 46544554 4567666654
No 18
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.88 E-value=7.4e-21 Score=212.98 Aligned_cols=324 Identities=17% Similarity=0.150 Sum_probs=184.7
Q ss_pred ceEEEEEecccC----CC---cCCChHhHHHhHHHHHH--------HHCCC----eEEEEEecCCCCCcccchhhhhccc
Q 009139 151 SYNIVFVTAEAA----PY---SKTGGLGDVCGSLPVAL--------AARGH----RVMVVSPRYFNGTAADENFTLAKDL 211 (542)
Q Consensus 151 ~MkIl~Vt~e~~----P~---~~~GGl~~~v~~La~~L--------~~~Gh----eV~Vitp~~~~~~~~~~~~~~~~~~ 211 (542)
.|||+||+.+.+ |. ..+||..+||.+|+++| +++|| +|+|+|...+... +..|...++
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~--~~~~~~~~e- 331 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAE--GTTCNQRLE- 331 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcc--ccccccccc-
Confidence 379999999872 21 13799999999999985 68999 7789997653211 011111000
Q ss_pred CceeEEeecCCceeEEEEEeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCC-ChHH-HHHHHHHHHHHhcc-ccCCCCCCC
Q 009139 212 GCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFG-DNQF-RYTLLCYAACEAPL-VLPLGGFTY 288 (542)
Q Consensus 212 ~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~-~~~~-r~~~~~~a~~~~~~-~l~~~~f~~ 288 (542)
.....+++.+++++..... ..+. +.| .+ ...+ ....|...+.+... .. .
T Consensus 332 -----------------~~~~~~~~~I~rvp~g~~~--~~~~-~~~--i~k~~l~p~l~~f~~~~~~~~~~~~------~ 383 (784)
T TIGR02470 332 -----------------KVYGTEHAWILRVPFRTEN--GIIL-RNW--ISRFEIWPYLETFAEDAEKEILAEL------Q 383 (784)
T ss_pred -----------------cccCCCceEEEEecCCCCc--cccc-ccc--cCHHHHHHHHHHHHHHHHHHHHHhc------C
Confidence 0112367888887532210 0000 000 00 0011 11223333333221 11 2
Q ss_pred CCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhccccccccccccccccc
Q 009139 289 GEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALD 368 (542)
Q Consensus 289 ~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~ 368 (542)
.+||+||+|.|.+++++..++.. .++|.|.|.|.+...... ..+. .|. ..+..+ +
T Consensus 384 ~~pDlIHahy~d~glva~lla~~-------lgVP~v~t~HsL~~~K~~------~~g~--~~~-~~e~~~------~--- 438 (784)
T TIGR02470 384 GKPDLIIGNYSDGNLVASLLARK-------LGVTQCTIAHALEKTKYP------DSDI--YWQ-EFEDKY------H--- 438 (784)
T ss_pred CCCCEEEECCCchHHHHHHHHHh-------cCCCEEEECCcchhhccc------cccc--ccc-cchhHH------H---
Confidence 47999999999999998777754 589999999987421110 0111 010 000000 0
Q ss_pred chhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhh------h------hhcCCccEEEEeCCCcCCCcCCCCccc
Q 009139 369 TGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHE------I------LSSRKSVLNGITNGIDITEWNPSSDEH 436 (542)
Q Consensus 369 ~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~------~------l~~~~~ki~vIpNGVD~~~f~p~~~~~ 436 (542)
+...+..+..++..||.|||.|.............|+... + +...+.|+.+||+|+|.+.|.|.....
T Consensus 439 ~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~ 518 (784)
T TIGR02470 439 FSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKE 518 (784)
T ss_pred hhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchh
Confidence 0001122556788999999999754332111101111111 1 112457999999999999998854320
Q ss_pred cc-ccccccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCch-----
Q 009139 437 IA-SHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDP----- 508 (542)
Q Consensus 437 ~~-~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~----- 508 (542)
-. .... +.++...-++...++.+|+..++++|+|++|||++++||++.|++|+.++.. .+++|+|+|.+..
T Consensus 519 ~r~~~~~-~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~ 597 (784)
T TIGR02470 519 KRLTNLH-PEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESK 597 (784)
T ss_pred hhhhhhh-cchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCccccccc
Confidence 00 0000 0000000123455678887545688999999999999999999999987643 4799999997642
Q ss_pred -----hhHHHHHHHHHHcC--CCEEEEccCC
Q 009139 509 -----QFESWMRDTEATYK--DKYRGWVGFN 532 (542)
Q Consensus 509 -----~~~~~l~~la~~~~--~~v~~~~Gy~ 532 (542)
.+.+.+++++++++ ++| .|+|+.
T Consensus 598 d~ee~~~i~~L~~la~~~gL~g~V-~flG~~ 627 (784)
T TIGR02470 598 DREEQAEIEKMHNLIDQYQLHGQI-RWIGAQ 627 (784)
T ss_pred chhHHHHHHHHHHHHHHhCCCCeE-EEccCc
Confidence 13456777888765 666 589974
No 19
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.87 E-value=1.8e-20 Score=195.45 Aligned_cols=267 Identities=20% Similarity=0.218 Sum_probs=172.1
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||++++. | ..||+++++.+|+++|+++||+|+|+|...+.... .
T Consensus 1 mki~~~~~---p--~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~------------------------------~ 45 (371)
T cd04962 1 MKIGIVCY---P--TYGGSGVVATELGKALARRGHEVHFITSSRPFRLD------------------------------E 45 (371)
T ss_pred CceeEEEE---e--CCCCccchHHHHHHHHHhcCCceEEEecCCCcchh------------------------------h
Confidence 89999973 5 36999999999999999999999999965321100 0
Q ss_pred eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHh
Q 009139 232 YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASK 311 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~ 311 (542)
..+++.++.++.+.+.. .. .+ .... .....+.+.++ ..+|||||+|.+....++.++...
T Consensus 46 ~~~~~~~~~~~~~~~~~----~~-----~~--~~~~-~~~~~l~~~i~--------~~~~divh~~~~~~~~~~~~~~~~ 105 (371)
T cd04962 46 YSPNIFFHEVEVPQYPL----FQ-----YP--PYDL-ALASKIAEVAK--------RYKLDLLHVHYAVPHAVAAYLARE 105 (371)
T ss_pred hccCeEEEEecccccch----hh-----cc--hhHH-HHHHHHHHHHh--------cCCccEEeecccCCccHHHHHHHH
Confidence 01222322222111100 00 00 0000 11122222221 248999999986554444443322
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
... ..++|+|+|+|+....- .+.. ..+ ..+.+.+++.+|.|+++|+
T Consensus 106 ~~~---~~~~~~i~~~h~~~~~~---------~~~~-~~~---------------------~~~~~~~~~~~d~ii~~s~ 151 (371)
T cd04962 106 ILG---KKDLPVVTTLHGTDITL---------VGQD-PSF---------------------QPATRFSIEKSDGVTAVSE 151 (371)
T ss_pred hcC---cCCCcEEEEEcCCcccc---------cccc-ccc---------------------hHHHHHHHhhCCEEEEcCH
Confidence 211 13799999999763210 0000 000 1234567788999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
.+++.+.... ....++.+||||+|...|.+.. +...+++++++ ++.+++
T Consensus 152 ~~~~~~~~~~----------~~~~~i~vi~n~~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~i 200 (371)
T cd04962 152 SLRQETYELF----------DITKEIEVIPNFVDEDRFRPKP-------------------DEALKRRLGAP--EGEKVL 200 (371)
T ss_pred HHHHHHHHhc----------CCcCCEEEecCCcCHhhcCCCc-------------------hHHHHHhcCCC--CCCeEE
Confidence 9988776421 1357899999999987776542 12345677775 477899
Q ss_pred EEEccCccccCHHHHHHHHHhhhcC-CcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCChhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILAD-DIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~~-dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~~~l~~~~~A 541 (542)
+++||+.++||++.+++|++.+.+. +++|+++|.|+. .+.++++++++. +++ .|.|+.+++..++.+
T Consensus 201 l~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~ 270 (371)
T cd04962 201 IHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPE--RSPAERLARELGLQDDV-LFLGKQDHVEELLSI 270 (371)
T ss_pred EEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcC--HHHHHHHHHHcCCCceE-EEecCcccHHHHHHh
Confidence 9999999999999999999998753 799999999974 566777777653 445 588999888887754
No 20
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.86 E-value=6.3e-20 Score=209.36 Aligned_cols=345 Identities=13% Similarity=0.080 Sum_probs=193.5
Q ss_pred CCCceEEEEEecccCC---------CcCCChHhHHHhHHHHHHHHCC--CeEEEEEecCCCCCcccchhhhhcccCceeE
Q 009139 148 TRVSYNIVFVTAEAAP---------YSKTGGLGDVCGSLPVALAARG--HRVMVVSPRYFNGTAADENFTLAKDLGCCMK 216 (542)
Q Consensus 148 ~~~~MkIl~Vt~e~~P---------~~~~GGl~~~v~~La~~L~~~G--heV~Vitp~~~~~~~~~~~~~~~~~~~~~~~ 216 (542)
..+.|.|+||+.+-.| -..+||..+||.+||++|+++| |+|.|+|....... .+..|....+......
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~-~~~~y~~p~e~~~~~~ 244 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPD-VDWSYGEPTEMLTPRS 244 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccc-cccccCCccccccccc
Confidence 4567999999987553 1348999999999999999998 89999997643211 0111221100000000
Q ss_pred EeecCCceeEEEEEeeeCCeEEEEEcCCC---CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccc----cCCCCC--C
Q 009139 217 ICCFGGEQEIAFFHEYREGVDWVFVDHPS---YHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLV----LPLGGF--T 287 (542)
Q Consensus 217 v~~~g~~~~~~~~~~~~~gv~v~~i~~p~---~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~----l~~~~f--~ 287 (542)
. ....+ .....+|+.++++++.. |.++..++ -...-|...++...+. +...-. .
T Consensus 245 ~---~~~~~---~~~~~~g~rIvRip~GP~~~~l~Ke~L~-----------~~l~ef~d~~l~~~~~~~~~~~~~~~~~~ 307 (1050)
T TIGR02468 245 S---ENDGD---EMGESSGAYIIRIPFGPRDKYIPKEELW-----------PYIPEFVDGALSHIVNMSKVLGEQIGSGH 307 (1050)
T ss_pred c---ccccc---cccCCCCeEEEEeccCCCCCCcCHHHHH-----------HHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 0 00000 01134689999987542 22111111 1112233333332211 100000 0
Q ss_pred CCCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhh---cCC-Chhhhcccccccccccc
Q 009139 288 YGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKN---LGL-PSEWYGALEWVFPTWAR 363 (542)
Q Consensus 288 ~~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~---lgl-~~~~~~~l~~~~~~~~~ 363 (542)
...|||||+|+|.++.+++.++.. .++|+|+|.|++.. ..... -|. +..- ...
T Consensus 308 ~~~pDvIHaHyw~sG~aa~~L~~~-------lgVP~V~T~HSLgr------~K~~~ll~~g~~~~~~---~~~------- 364 (1050)
T TIGR02468 308 PVWPYVIHGHYADAGDSAALLSGA-------LNVPMVLTGHSLGR------DKLEQLLKQGRMSKEE---INS------- 364 (1050)
T ss_pred CCCCCEEEECcchHHHHHHHHHHh-------hCCCEEEECccchh------hhhhhhcccccccccc---ccc-------
Confidence 114999999999999998887764 48999999998621 11110 010 0000 000
Q ss_pred cccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCC--chhhhhh-----------cCCccEEEEeCCCcCCCcC
Q 009139 364 THALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGY--GLHEILS-----------SRKSVLNGITNGIDITEWN 430 (542)
Q Consensus 364 ~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~--Gl~~~l~-----------~~~~ki~vIpNGVD~~~f~ 430 (542)
.......+..+..++..||.||++|+..++++...+.++ +|...|. ....++.|||||||++.|.
T Consensus 365 --~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~ 442 (1050)
T TIGR02468 365 --TYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIV 442 (1050)
T ss_pred --ccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHcc
Confidence 000123355788899999999999999998765432210 0001111 1134999999999999999
Q ss_pred CCCccccccccccccc--chhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--C--CcEEEEEe
Q 009139 431 PSSDEHIASHYSIDDL--SGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--D--DIQFVMLG 504 (542)
Q Consensus 431 p~~~~~~~~~~~~~d~--~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~--dv~LVIvG 504 (542)
|.....-.......+. .........+++.+ . .+++++|+|+||+.++||++.||+|+..+.+ . ++. +|+|
T Consensus 443 P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~-~--~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG 518 (1050)
T TIGR02468 443 PHDGDMDGETEGNEEHPAKPDPPIWSEIMRFF-T--NPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMG 518 (1050)
T ss_pred CCCccccchhcccccccccccchhhHHHHhhc-c--cCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEe
Confidence 8532100000000000 00001122344433 3 2578999999999999999999999999863 2 444 5678
Q ss_pred cCch---------hhHHHHHHHHHHcC--CCEEEEccC--Chhhhhhhh
Q 009139 505 SGDP---------QFESWMRDTEATYK--DKYRGWVGF--NVPISHRIT 540 (542)
Q Consensus 505 ~G~~---------~~~~~l~~la~~~~--~~v~~~~Gy--~~~l~~~~~ 540 (542)
.|+. .+...++++++++. ++| .|+|+ ++++..+|.
T Consensus 519 ~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V-~FlG~v~~edvp~lYr 566 (1050)
T TIGR02468 519 NRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQV-AYPKHHKQSDVPDIYR 566 (1050)
T ss_pred cCchhhhhhccchHHHHHHHHHHHHhCCCCeE-EecCCCCHHHHHHHHH
Confidence 7642 12355677777764 555 58997 567777664
No 21
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.85 E-value=3.1e-19 Score=184.66 Aligned_cols=250 Identities=20% Similarity=0.225 Sum_probs=165.8
Q ss_pred CCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEeeeCCeEEEEEcCCC
Q 009139 166 KTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS 245 (542)
Q Consensus 166 ~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~ 245 (542)
..||+++++.+|+++|+++||+|.|+++..... ... ...+++++.++...
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~----~~~--------------------------~~~~~~~~~~~~~~ 57 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLV----AEL--------------------------EAEGSRHIKLPFIS 57 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchH----HHH--------------------------HhcCCeEEEccccc
Confidence 459999999999999999999999998642110 000 11345554442111
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEE
Q 009139 246 YHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSIL 325 (542)
Q Consensus 246 ~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~ 325 (542)
...+ ........+...++ ..+||+||+|.....+.+.++... .++|+|+
T Consensus 58 ----~~~~------------~~~~~~~~l~~~~~--------~~~~dii~~~~~~~~~~~~~~~~~-------~~~~~i~ 106 (355)
T cd03819 58 ----KNPL------------RILLNVARLRRLIR--------EEKVDIVHARSRAPAWSAYLAARR-------TRPPFVT 106 (355)
T ss_pred ----cchh------------hhHHHHHHHHHHHH--------HcCCCEEEECCCchhHHHHHHHHh-------cCCCEEE
Confidence 0000 10011111222221 248999999987666555444332 4799999
Q ss_pred EecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCc
Q 009139 326 VIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYG 405 (542)
Q Consensus 326 TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~G 405 (542)
++|+... .. . +.+..+..+|.++++|+.+.+.+....
T Consensus 107 ~~h~~~~-----~~---------~-------------------------~~~~~~~~~~~vi~~s~~~~~~~~~~~---- 143 (355)
T cd03819 107 TVHGFYS-----VN---------F-------------------------RYNAIMARGDRVIAVSNFIADHIRENY---- 143 (355)
T ss_pred EeCCchh-----hH---------H-------------------------HHHHHHHhcCEEEEeCHHHHHHHHHhc----
Confidence 9997621 00 0 112235679999999999988876321
Q ss_pred hhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHH
Q 009139 406 LHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDL 485 (542)
Q Consensus 406 l~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~ 485 (542)
..+..++.+||||+|.+.|.+.... ......++++++++ ++.++|+++||+.++||++.
T Consensus 144 -----~~~~~k~~~i~ngi~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~i~~~Gr~~~~Kg~~~ 202 (355)
T cd03819 144 -----GVDPDRIRVIPRGVDLDRFDPGAVP--------------PERILALAREWPLP--KGKPVILLPGRLTRWKGQEV 202 (355)
T ss_pred -----CCChhhEEEecCCccccccCccccc--------------hHHHHHHHHHcCCC--CCceEEEEeeccccccCHHH
Confidence 1346789999999999888664321 01223367787765 46789999999999999999
Q ss_pred HHHHHHhhhc--CCcEEEEEecCch--hhHHHHHHHHHHcC--CCEEEEccCChhhhhhhhc
Q 009139 486 IRLAAPEILA--DDIQFVMLGSGDP--QFESWMRDTEATYK--DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 486 LieA~~~L~~--~dv~LVIvG~G~~--~~~~~l~~la~~~~--~~v~~~~Gy~~~l~~~~~A 541 (542)
+++|+..+.+ .+++|+|+|.|+. .+.+.+++.++++. ++| .+.|+.+++..++.+
T Consensus 203 li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~l~~ 263 (355)
T cd03819 203 FIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRV-TFVGHCSDMPAAYAL 263 (355)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceE-EEcCCcccHHHHHHh
Confidence 9999999976 4899999999864 34455566666553 345 689998888887765
No 22
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.84 E-value=3.7e-19 Score=190.43 Aligned_cols=287 Identities=13% Similarity=0.018 Sum_probs=156.2
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCC-CeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEE
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARG-HRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAF 228 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~G-heV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 228 (542)
..|||+++|..|.|+ ++|+.+.+..++..|+++| |+|+||+|.++.... ...|...+.. .. +..++..+
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~-~~~~~~~~~f----~~---~~~~e~~~ 72 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQ-KLVYPNKITF----SS---PSEQEAYV 72 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccc-cccccccccc----cC---chhhhhhh
Confidence 469999999999995 5999999999999999999 899999998753210 0011100000 00 00000000
Q ss_pred EEeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCch-hHHHHH
Q 009139 229 FHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHA-GLVPVL 307 (542)
Q Consensus 229 ~~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~-~~~~~~ 307 (542)
+ .-.+-++++++...+..-+..|+.. .+.......+.+.++ ..+|||||+|+... +++..
T Consensus 73 -~-~~~~~~v~r~~s~~~p~yp~r~~~~--------~r~~~~~~~i~~~l~--------~~~pDVIHv~tP~~LG~~~~- 133 (462)
T PLN02846 73 -R-QWLEERISFLPKFSIKFYPGKFSTD--------KRSILPVGDISETIP--------DEEADIAVLEEPEHLTWYHH- 133 (462)
T ss_pred -h-hhccCeEEEecccccccCccccccc--------ccccCChHHHHHHHH--------hcCCCEEEEcCchhhhhHHH-
Confidence 0 0011233343221110000011100 011111122223322 24899999998543 33311
Q ss_pred HHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCcee
Q 009139 308 LASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLL 387 (542)
Q Consensus 308 l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi 387 (542)
.....+ +..++|.|+|+. +....+. + ..+....++.. ....+.+. .++|.|+
T Consensus 134 g~~~~~-----k~~~vV~tyHT~-y~~Y~~~--~-~~g~~~~~l~~-----------------~~~~~~~r--~~~d~vi 185 (462)
T PLN02846 134 GKRWKT-----KFRLVIGIVHTN-YLEYVKR--E-KNGRVKAFLLK-----------------YINSWVVD--IYCHKVI 185 (462)
T ss_pred HHHHHh-----cCCcEEEEECCC-hHHHHHH--h-ccchHHHHHHH-----------------HHHHHHHH--HhcCEEE
Confidence 111111 123488899984 2111100 0 00000011000 00011111 2489999
Q ss_pred ecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCC
Q 009139 388 TVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPD 467 (542)
Q Consensus 388 ~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~ 467 (542)
++|....+ +.. .+.+..||||.+.|.|... .+++.++ +.+.-
T Consensus 186 ~pS~~~~~-l~~----------------~~i~~v~GVd~~~f~~~~~--------------------~~~~~~~-~~~~~ 227 (462)
T PLN02846 186 RLSAATQD-YPR----------------SIICNVHGVNPKFLEIGKL--------------------KLEQQKN-GEQAF 227 (462)
T ss_pred ccCHHHHH-Hhh----------------CEEecCceechhhcCCCcc--------------------cHhhhcC-CCCCc
Confidence 99985533 321 2334458999998877521 1222222 21111
Q ss_pred CCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCCh
Q 009139 468 CPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNV 533 (542)
Q Consensus 468 ~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~ 533 (542)
.++++|||||.++||++.||+|++++.+ .+++|+|+|+|+. ++++++++.+++..+++|.|+..
T Consensus 228 ~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~--~~~L~~~a~~l~l~~~vf~G~~~ 293 (462)
T PLN02846 228 TKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGED--SDEVKAAAEKLELDVRVYPGRDH 293 (462)
T ss_pred ceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCcc--HHHHHHHHHhcCCcEEEECCCCC
Confidence 3579999999999999999999999865 4799999999984 78899999887755666889843
No 23
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.83 E-value=6.6e-19 Score=186.35 Aligned_cols=259 Identities=11% Similarity=0.189 Sum_probs=169.4
Q ss_pred EEEEEecccCCC--cCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEE
Q 009139 153 NIVFVTAEAAPY--SKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFH 230 (542)
Q Consensus 153 kIl~Vt~e~~P~--~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 230 (542)
||+|++++-.|. ...||+|+++.++++.|++ +|+|+|-..++.. . + +
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~-~---~------------------------~ 52 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYP-E---Y------------------------T 52 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCC-c---h------------------------h
Confidence 799988775543 4589999999999999953 9999997765311 0 0 1
Q ss_pred eeeCCeEEEEEcCCCCCCC-CCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHH
Q 009139 231 EYREGVDWVFVDHPSYHRP-GNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLA 309 (542)
Q Consensus 231 ~~~~gv~v~~i~~p~~~~~-~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~ 309 (542)
...+|+.+.+++.+....+ .+.|.. . .... ++..+....... ...++||||+|+... +...+ .
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~---~~~~~~~~~~~~-----~~~~~~vi~v~~~~~-~~~~~-~ 116 (380)
T PRK15484 53 KVNDNCDIHYIGFSRIYKRLFQKWTR----L--DPLP---YSQRILNIAHKF-----TITKDSVIVIHNSMK-LYRQI-R 116 (380)
T ss_pred hccCCCceEEEEeccccchhhhhhhc----c--Cchh---HHHHHHHHHHhc-----CCCCCcEEEEeCcHH-hHHHH-H
Confidence 1235667666644331110 001000 0 0111 222222222111 123689999998443 22222 2
Q ss_pred HhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeec
Q 009139 310 SKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTV 389 (542)
Q Consensus 310 ~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~v 389 (542)
.. ..+.|+|+++|+.. .+ . .+..++.|+++
T Consensus 117 ~~------~~~~~~v~~~h~~~----~~-----------~-----------------------------~~~~~~~ii~~ 146 (380)
T PRK15484 117 ER------APQAKLVMHMHNAF----EP-----------E-----------------------------LLDKNAKIIVP 146 (380)
T ss_pred hh------CCCCCEEEEEeccc----Ch-----------h-----------------------------HhccCCEEEEc
Confidence 22 25789999999751 00 0 12347899999
Q ss_pred ChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCC
Q 009139 390 SKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCP 469 (542)
Q Consensus 390 S~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~ 469 (542)
|+..++.+... .+..++.+||||+|.+.|.+.. +..++++++++ ++.+
T Consensus 147 S~~~~~~~~~~-----------~~~~~i~vIpngvd~~~~~~~~-------------------~~~~~~~~~~~--~~~~ 194 (380)
T PRK15484 147 SQFLKKFYEER-----------LPNADISIVPNGFCLETYQSNP-------------------QPNLRQQLNIS--PDET 194 (380)
T ss_pred CHHHHHHHHhh-----------CCCCCEEEecCCCCHHHcCCcc-------------------hHHHHHHhCCC--CCCe
Confidence 99988776531 2356899999999988886642 23567788875 3668
Q ss_pred EEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCch-------hhHHHHHHHHHHcCCCEEEEccCC--hhhhhh
Q 009139 470 LIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDP-------QFESWMRDTEATYKDKYRGWVGFN--VPISHR 538 (542)
Q Consensus 470 vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~-------~~~~~l~~la~~~~~~v~~~~Gy~--~~l~~~ 538 (542)
+|+|+||+.++||++.|++|++.+.+ .+++|+|+|+|+. .+.+.+++++++++.++ .|+|+. +++..+
T Consensus 195 ~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v-~~~G~~~~~~l~~~ 273 (380)
T PRK15484 195 VLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRC-IMLGGQPPEKMHNY 273 (380)
T ss_pred EEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcE-EEeCCCCHHHHHHH
Confidence 99999999999999999999999875 4899999998742 35667888887887776 588883 567776
Q ss_pred hhc
Q 009139 539 ITA 541 (542)
Q Consensus 539 ~~A 541 (542)
+.+
T Consensus 274 ~~~ 276 (380)
T PRK15484 274 YPL 276 (380)
T ss_pred HHh
Confidence 654
No 24
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.83 E-value=4.3e-20 Score=184.65 Aligned_cols=261 Identities=20% Similarity=0.260 Sum_probs=171.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
++|+||++.|+| ..||++.+++.|++.|.++||.|.+++..|++.. | + +.
T Consensus 1 ~~i~mVsdff~P--~~ggveshiy~lSq~li~lghkVvvithayg~r~---------------------g------i-ry 50 (426)
T KOG1111|consen 1 SRILMVSDFFYP--STGGVESHIYALSQCLIRLGHKVVVITHAYGNRV---------------------G------I-RY 50 (426)
T ss_pred CcceeeCccccc--CCCChhhhHHHhhcchhhcCCeEEEEeccccCcc---------------------c------e-ee
Confidence 579999999999 5799999999999999999999999998886521 1 0 22
Q ss_pred eeCCeEEEEEcCCCCCCC---CCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHH
Q 009139 232 YREGVDWVFVDHPSYHRP---GNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLL 308 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~---~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l 308 (542)
..+|++||.++.....+. +..|+ ++| ++|. + +..++..|||.|...+.+.--.+
T Consensus 51 lt~glkVyylp~~v~~n~tT~ptv~~----~~P--llr~-------------i----~lrE~I~ivhghs~fS~lahe~l 107 (426)
T KOG1111|consen 51 LTNGLKVYYLPAVVGYNQTTFPTVFS----DFP--LLRP-------------I----LLRERIEIVHGHSPFSYLAHEAL 107 (426)
T ss_pred ecCCceEEEEeeeeeecccchhhhhc----cCc--ccch-------------h----hhhhceEEEecCChHHHHHHHHH
Confidence 346789998865442211 11121 111 1110 0 11347899999987654432211
Q ss_pred HHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceee
Q 009139 309 ASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLT 388 (542)
Q Consensus 309 ~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~ 388 (542)
.- .+ .-|.++|+|-|.+. |.-+. ...+.+. .+...+...|++||
T Consensus 108 ~h-ar----tMGlktVfTdHSlf--Gfad~--------~si~~n~---------------------ll~~sL~~id~~Ic 151 (426)
T KOG1111|consen 108 MH-AR----TMGLKTVFTDHSLF--GFADI--------GSILTNK---------------------LLPLSLANIDRIIC 151 (426)
T ss_pred HH-HH----hcCceEEEeccccc--cccch--------hhhhhcc---------------------eeeeeecCCCcEEE
Confidence 11 11 24789999999862 21111 1112211 11223567899999
Q ss_pred cChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCC
Q 009139 389 VSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDC 468 (542)
Q Consensus 389 vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~ 468 (542)
||..-++...-. .. .+++|+.+|||.++++.|.|.... -+ ..+.
T Consensus 152 Vshtskentvlr-------~~--L~p~kvsvIPnAv~~~~f~P~~~~--------------------------~~-S~~i 195 (426)
T KOG1111|consen 152 VSHTSKENTVLR-------GA--LAPAKVSVIPNAVVTHTFTPDAAD--------------------------KP-SADI 195 (426)
T ss_pred EeecCCCceEEE-------ec--cCHhHeeeccceeeccccccCccc--------------------------cC-CCCe
Confidence 998776654321 11 357999999999999999995321 01 1244
Q ss_pred CEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHH--cCCCEEEEccC--Chhhhhhhh
Q 009139 469 PLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEAT--YKDKYRGWVGF--NVPISHRIT 540 (542)
Q Consensus 469 ~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~--~~~~v~~~~Gy--~~~l~~~~~ 540 (542)
..|+.++||.++||+|+|+++++++++ ++++|+|+|+||. ...++++-++ +.++++ ++|- .+.+.+.+.
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk--~i~lee~lEk~~l~~rV~-~lG~v~h~~Vr~vl~ 270 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPK--RIDLEEMLEKLFLQDRVV-MLGTVPHDRVRDVLV 270 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcc--cchHHHHHHHhhccCceE-EecccchHHHHHHHh
Confidence 789999999999999999999999987 4899999999995 3344444444 346775 6664 445555543
No 25
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.82 E-value=2.6e-18 Score=178.01 Aligned_cols=261 Identities=18% Similarity=0.195 Sum_probs=170.0
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||+++++.+ ..||.++++.+++++|.+.||+|+++++..... .+... ..
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~-----~~~~~----------------------~~ 49 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG-----DYDDE----------------------IE 49 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCc-----chHHH----------------------HH
Confidence 699999865 369999999999999999999999999864321 01000 01
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
..++.++.++... .....+ .....+.++ ..+|||||+|......++.++...
T Consensus 50 ~~~~~~~~~~~~~----------------~~~~~~---~~~~~~~~~--------~~~~Dvv~~~~~~~~~~~~~~~~~- 101 (358)
T cd03812 50 KLGGKIYYIPARK----------------KNPLKY---FKKLYKLIK--------KNKYDIVHVHGSSASGFILLAAKK- 101 (358)
T ss_pred HcCCeEEEecCCC----------------ccHHHH---HHHHHHHHh--------cCCCCEEEEeCcchhHHHHHHHhh-
Confidence 2355555432111 001111 111222211 248999999987655554444432
Q ss_pred CCCCCCCCCc-EEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 313 RPHGVYKDAR-SILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 313 ~~~~~~~~ip-vV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.+.| +|++.|+..+..... .... . ...+.+..++.+|.++++|+
T Consensus 102 ------~~~~~~v~~~~~~~~~~~~~----------~~~~------------------~-~~~~~~~~~~~~~~~i~~s~ 146 (358)
T cd03812 102 ------AGVKVRIAHSHNTSDSHDKK----------KKIL------------------K-YKVLRKLINRLATDYLACSE 146 (358)
T ss_pred ------CCCCeEEEEecccccccccc----------chhh------------------H-HHHHHHHHHhcCCEEEEcCH
Confidence 2344 577888763211100 0000 0 01234556778999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
..++.+... ....++.+||||+|.+.|.+... .+.. +++++.. +++++|
T Consensus 147 ~~~~~~~~~-----------~~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~-~~~~~~~--~~~~~i 195 (358)
T cd03812 147 EAGKWLFGK-----------VKNKKFKVIPNGIDLEKFIFNEE-----------------IRKK-RRELGIL--EDKFVI 195 (358)
T ss_pred HHHHHHHhC-----------CCcccEEEEeccCcHHHcCCCch-----------------hhhH-HHHcCCC--CCCEEE
Confidence 888776531 23678999999999988866432 1222 4555553 477899
Q ss_pred EEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCChhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~~~l~~~~~A 541 (542)
+|+||+.++||++.+++|++.+.+ .+++|+|+|+|+. .+.+++.+++++ +++ .+.|+.+++..++..
T Consensus 196 ~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~--~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~ 266 (358)
T cd03812 196 GHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL--EEEIKKKVKELGLEDKV-IFLGVRNDVPELLQA 266 (358)
T ss_pred EEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHhcCCCCcE-EEecccCCHHHHHHh
Confidence 999999999999999999999975 4899999999984 566777776653 455 688998888877654
No 26
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.82 E-value=2.4e-18 Score=180.60 Aligned_cols=263 Identities=16% Similarity=0.092 Sum_probs=164.4
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
.||++|...+ ..||+++++.+|+++|.+.|++++|++..... .+... .
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~------~~~~~----------------------~ 49 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVS------AFRKR----------------------I 49 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCC------hhHHH----------------------H
Confidence 4899998764 46999999999999999999999999843211 11110 0
Q ss_pred eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHh
Q 009139 232 YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASK 311 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~ 311 (542)
...|++++.++.... . .... ...+.++++ ..+|||||+|+..+. .+.+++..
T Consensus 50 ~~~~i~~~~~~~~~~-------~--------~~~~----~~~l~~~l~--------~~~~Divh~~~~~~~-~~~~~~~~ 101 (374)
T TIGR03088 50 QRPDVAFYALHKQPG-------K--------DVAV----YPQLYRLLR--------QLRPDIVHTRNLAAL-EAQLPAAL 101 (374)
T ss_pred HhcCceEEEeCCCCC-------C--------ChHH----HHHHHHHHH--------HhCCCEEEEcchhHH-HHHHHHHh
Confidence 124667666532210 0 0111 112222222 248999999975432 22333322
Q ss_pred cCCCCCCCCCcE-EEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecC
Q 009139 312 YRPHGVYKDARS-ILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390 (542)
Q Consensus 312 ~~~~~~~~~ipv-V~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS 390 (542)
.++|+ +++.|+....... ...+. ...+.+...+.+|.++++|
T Consensus 102 -------~~~~~~i~~~h~~~~~~~~----------~~~~~--------------------~~~~~~~~~~~~~~~i~vs 144 (374)
T TIGR03088 102 -------AGVPARIHGEHGRDVFDLD----------GSNWK--------------------YRWLRRLYRPLIHHYVAVS 144 (374)
T ss_pred -------cCCCeEEEeecCcccccch----------hhHHH--------------------HHHHHHHHHhcCCeEEEeC
Confidence 24553 5566643210000 00010 0112233445689999999
Q ss_pred hhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCE
Q 009139 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPL 470 (542)
Q Consensus 391 ~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~v 470 (542)
+..++.+.... ..+..++.+|+||||.+.|.+.... +...++....+ ++.++
T Consensus 145 ~~~~~~~~~~~---------~~~~~~~~vi~ngvd~~~~~~~~~~-----------------~~~~~~~~~~~--~~~~~ 196 (374)
T TIGR03088 145 RDLEDWLRGPV---------KVPPAKIHQIYNGVDTERFHPSRGD-----------------RSPILPPDFFA--DESVV 196 (374)
T ss_pred HHHHHHHHHhc---------CCChhhEEEeccCccccccCCCccc-----------------hhhhhHhhcCC--CCCeE
Confidence 99888775421 1346789999999999888765321 11222233232 46789
Q ss_pred EEEEccCccccCHHHHHHHHHhhhcC------CcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccCChhhhhhhhc
Q 009139 471 IGFIGRLDYQKGIDLIRLAAPEILAD------DIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 471 IlfVGRl~~~KGid~LieA~~~L~~~------dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy~~~l~~~~~A 541 (542)
|+++||+.++||++.|++|++++.+. +++|+++|+|+. .+.+++++++++ .+.+.|.|+.+++..++.+
T Consensus 197 i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 272 (374)
T TIGR03088 197 VGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPA--RGACEQMVRAAGLAHLVWLPGERDDVPALMQA 272 (374)
T ss_pred EEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCch--HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh
Confidence 99999999999999999999998642 689999999973 567787777664 2345688998888887765
No 27
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.82 E-value=2.6e-18 Score=177.67 Aligned_cols=258 Identities=17% Similarity=0.173 Sum_probs=169.3
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||+++++.+ ..||++.++.+|+++|.++||+|+|++....... ...
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~---~~~--------------------------- 46 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEV---KPP--------------------------- 46 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCc---cch---------------------------
Confidence 588888653 4699999999999999999999999986532110 000
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
.....+..+.... ... .... ....+.++++ ..+|||||+|..++.++..+++...
T Consensus 47 ~~~~~~~~~~~~~-----~~~---------~~~~---~~~~~~~~~~--------~~~pdiv~~~~~~~~~~~~l~~~~~ 101 (360)
T cd04951 47 IDATIILNLNMSK-----NPL---------SFLL---ALWKLRKILR--------QFKPDVVHAHMFHANIFARLLRLFL 101 (360)
T ss_pred hhccceEEecccc-----cch---------hhHH---HHHHHHHHHH--------hcCCCEEEEcccchHHHHHHHHhhC
Confidence 0000111111110 000 0111 1111222222 2389999999987766665555432
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
.++|+|.|.|+....+. .. ....+.....++.++++|+.
T Consensus 102 ------~~~~~v~~~h~~~~~~~--------------~~---------------------~~~~~~~~~~~~~~~~~s~~ 140 (360)
T cd04951 102 ------PSPPLICTAHSKNEGGR--------------LR---------------------MLAYRLTDFLSDLTTNVSKE 140 (360)
T ss_pred ------CCCcEEEEeeccCchhH--------------HH---------------------HHHHHHHhhccCceEEEcHH
Confidence 47899999998632110 00 01112233457888999998
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
..+.+.... ..+..++.+||||+|...|.+.. ..+..++++++++ +++++++
T Consensus 141 ~~~~~~~~~---------~~~~~~~~~i~ng~~~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~~~l 192 (360)
T cd04951 141 ALDYFIASK---------AFNANKSFVVYNGIDTDRFRKDP-----------------ARRLKIRNALGVK--NDTFVIL 192 (360)
T ss_pred HHHHHHhcc---------CCCcccEEEEccccchhhcCcch-----------------HHHHHHHHHcCcC--CCCEEEE
Confidence 888776421 12467899999999988776542 2345678888885 4678999
Q ss_pred EEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCChhhhhhhhc
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~~~l~~~~~A 541 (542)
|+||+.+.||++.+++|+.++.+. +++|+|+|+|+. .+.++++++++. +++ .++|+.+++..++.+
T Consensus 193 ~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~ 262 (360)
T cd04951 193 AVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL--RATLERLIKALGLSNRV-KLLGLRDDIAAYYNA 262 (360)
T ss_pred EEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc--HHHHHHHHHhcCCCCcE-EEecccccHHHHHHh
Confidence 999999999999999999998753 799999999974 566777776654 345 588998888777654
No 28
>PLN00142 sucrose synthase
Probab=99.82 E-value=5.2e-19 Score=198.31 Aligned_cols=320 Identities=14% Similarity=0.124 Sum_probs=179.2
Q ss_pred eEEEEEecccC--C-----CcCCChHhHHHhHHH--------HHHHHCCCeEE----EEEecCCCCCcccchhhhhcccC
Q 009139 152 YNIVFVTAEAA--P-----YSKTGGLGDVCGSLP--------VALAARGHRVM----VVSPRYFNGTAADENFTLAKDLG 212 (542)
Q Consensus 152 MkIl~Vt~e~~--P-----~~~~GGl~~~v~~La--------~~L~~~GheV~----Vitp~~~~~~~~~~~~~~~~~~~ 212 (542)
|||++|+.+-+ | ...+||.-+|+.+++ ++|+++||+|+ |+|...+... +..|...+
T Consensus 280 ~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~--~~~~~~~~--- 354 (815)
T PLN00142 280 FNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAK--GTTCNQRL--- 354 (815)
T ss_pred HhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCcc--CCcccCcc---
Confidence 69999998753 1 235899999997655 67888999775 8886543221 11111100
Q ss_pred ceeEEeecCCceeEEEEEeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCC-hHH-HHHHHHHHHHHhc-cccCCCCCCCC
Q 009139 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGD-NQF-RYTLLCYAACEAP-LVLPLGGFTYG 289 (542)
Q Consensus 213 ~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~-~~~-r~~~~~~a~~~~~-~~l~~~~f~~~ 289 (542)
+. ....+++.+++++... . + . |-+.| .+. ..+ ....|...+.+.. +.. ..
T Consensus 355 ------------e~---v~~~~~~~I~rvP~g~-~-~-~-~l~~~--i~ke~l~p~L~~f~~~~~~~~~~~~------~~ 407 (815)
T PLN00142 355 ------------EK---VSGTEHSHILRVPFRT-E-K-G-ILRKW--ISRFDVWPYLETFAEDAASEILAEL------QG 407 (815)
T ss_pred ------------ee---ccCCCceEEEecCCCC-C-c-c-ccccc--cCHHHHHHHHHHHHHHHHHHHHHhc------CC
Confidence 00 0123467777775322 0 0 0 11000 000 000 1112333333222 211 24
Q ss_pred CccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccc
Q 009139 290 EKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT 369 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~ 369 (542)
+||+||+|+|.+++++..++.. .++|.|+|.|.+..... ..-+..+.- .+.. + + +
T Consensus 408 ~PDlIHaHYwdsg~vA~~La~~-------lgVP~v~T~HsL~k~K~------~~~~~~~~~---~e~~---y---~---~ 462 (815)
T PLN00142 408 KPDLIIGNYSDGNLVASLLAHK-------LGVTQCTIAHALEKTKY------PDSDIYWKK---FDDK---Y---H---F 462 (815)
T ss_pred CCCEEEECCccHHHHHHHHHHH-------hCCCEEEEcccchhhhc------cccCCcccc---cchh---h---h---h
Confidence 7999999999999999888865 48999999998732110 000110000 0000 0 0 0
Q ss_pred hhHHHHHHHHHHhcCceeecChhhHHHHH---hhcc---CCc---hhhhh---hcCCccEEEEeCCCcCCCcCCCCcccc
Q 009139 370 GEAVNVLKGAIVTADRLLTVSKGYSWEIT---TVEG---GYG---LHEIL---SSRKSVLNGITNGIDITEWNPSSDEHI 437 (542)
Q Consensus 370 ~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~---~~~~---g~G---l~~~l---~~~~~ki~vIpNGVD~~~f~p~~~~~~ 437 (542)
...+..+..++..||.||+.|......+. .++. ++. +..++ .....|+.+|++|+|...|.|.....-
T Consensus 463 ~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~ 542 (815)
T PLN00142 463 SCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQK 542 (815)
T ss_pred hhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHh
Confidence 01123466788899999999976654221 1110 111 11110 112458999999999999987542100
Q ss_pred ccccc--ccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecC-ch----
Q 009139 438 ASHYS--IDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSG-DP---- 508 (542)
Q Consensus 438 ~~~~~--~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G-~~---- 508 (542)
.+. .+.+..+.-.....++.+|+..++++++|+++||+.++||++.||+|++++.+ .+++|+|+|.| ++
T Consensus 543 --rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~ 620 (815)
T PLN00142 543 --RLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSK 620 (815)
T ss_pred --hHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccc
Confidence 000 00001111122334567887545678899999999999999999999998754 37999999987 21
Q ss_pred --h---hHHHHHHHHHHcC--CCEEEEccC
Q 009139 509 --Q---FESWMRDTEATYK--DKYRGWVGF 531 (542)
Q Consensus 509 --~---~~~~l~~la~~~~--~~v~~~~Gy 531 (542)
+ ..+.+++++++++ ++| .|+|+
T Consensus 621 d~ee~~el~~L~~La~~lgL~~~V-~flG~ 649 (815)
T PLN00142 621 DREEIAEIKKMHSLIEKYNLKGQF-RWIAA 649 (815)
T ss_pred cHHHHHHHHHHHHHHHHcCCCCcE-EEcCC
Confidence 0 1245677777764 566 57775
No 29
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.82 E-value=1.3e-18 Score=183.31 Aligned_cols=281 Identities=16% Similarity=0.175 Sum_probs=162.5
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||+++.+.+ ..||+++++.+|+++|+++||+|+|+|+..+... .+. +
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~----~~~------------------------~ 48 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSH----CFE------------------------E 48 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchh----cch------------------------h
Confidence 8999998664 4699999999999999999999999997542210 000 0
Q ss_pred eeCC-eEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHH
Q 009139 232 YREG-VDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLAS 310 (542)
Q Consensus 232 ~~~g-v~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~ 310 (542)
..++ +.+..+..+. . + ..... + .....+..+....... ... ...++||||+|.+..+. +. +..
T Consensus 49 ~~~~~~~i~~~~~~~-~-~-~~~~~----~-~~~~~~~~~~~~~~~~-~~~-----~~~~~Dvi~~~~~~~~~-~~-~~~ 112 (392)
T cd03805 49 TKDGTLPVRVRGDWL-P-R-SIFGR----F-HILCAYLRMLYLALYL-LLL-----PDEKYDVFIVDQVSACV-PL-LKL 112 (392)
T ss_pred ccCCeeEEEEEeEEE-c-c-hhhHh----H-HHHHHHHHHHHHHHHH-Hhc-----ccCCCCEEEEcCcchHH-HH-HHH
Confidence 1111 3332221110 0 0 00000 0 0000000000010000 001 12489999999765432 22 221
Q ss_pred hcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecC
Q 009139 311 KYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390 (542)
Q Consensus 311 ~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS 390 (542)
. .+.|+|+++|..... ... ...+...+ | ......+++..++.+|.|+++|
T Consensus 113 -~------~~~~~i~~~h~~~~~-------~~~---~~~~~~~~------~-------~~~~~~~e~~~~~~ad~ii~~s 162 (392)
T cd03805 113 -F------SPSKILFYCHFPDQL-------LAQ---RGSLLKRL------Y-------RKPFDWLEEFTTGMADKIVVNS 162 (392)
T ss_pred -h------cCCcEEEEEecChHH-------hcC---CCcHHHHH------H-------HHHHHHHHHHHhhCceEEEEcC
Confidence 1 237999999954210 000 00010000 0 0011235677889999999999
Q ss_pred hhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCE
Q 009139 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPL 470 (542)
Q Consensus 391 ~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~v 470 (542)
+..++.+...... ....++.+|+||+|.+.|.+.... ..++....+ ++.++
T Consensus 163 ~~~~~~~~~~~~~--------~~~~~~~vi~n~vd~~~~~~~~~~-------------------~~~~~~~~~--~~~~~ 213 (392)
T cd03805 163 NFTASVFKKTFPS--------LAKNPREVVYPCVDTDSFESTSED-------------------PDPGLLIPK--SGKKT 213 (392)
T ss_pred hhHHHHHHHHhcc--------cccCCcceeCCCcCHHHcCccccc-------------------ccccccccC--CCceE
Confidence 9988877542110 122344699999999888764321 011122222 46789
Q ss_pred EEEEccCccccCHHHHHHHHHhhhc-----CCcEEEEEecCch------hhHHHHHHHHHH-c--CCCEEEEccC--Chh
Q 009139 471 IGFIGRLDYQKGIDLIRLAAPEILA-----DDIQFVMLGSGDP------QFESWMRDTEAT-Y--KDKYRGWVGF--NVP 534 (542)
Q Consensus 471 IlfVGRl~~~KGid~LieA~~~L~~-----~dv~LVIvG~G~~------~~~~~l~~la~~-~--~~~v~~~~Gy--~~~ 534 (542)
|+++||+.++||++.+++|++++.+ .+++|+++|+|+. .+.+++++++++ + .++| .|+|+ +++
T Consensus 214 i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V-~f~g~~~~~~ 292 (392)
T cd03805 214 FLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQV-IFLPSISDSQ 292 (392)
T ss_pred EEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceE-EEeCCCChHH
Confidence 9999999999999999999999874 3799999998864 345778888877 4 3455 58898 344
Q ss_pred hhhhhh
Q 009139 535 ISHRIT 540 (542)
Q Consensus 535 l~~~~~ 540 (542)
+..++.
T Consensus 293 ~~~~l~ 298 (392)
T cd03805 293 KELLLS 298 (392)
T ss_pred HHHHHh
Confidence 555544
No 30
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.82 E-value=3.4e-18 Score=179.73 Aligned_cols=287 Identities=21% Similarity=0.258 Sum_probs=174.5
Q ss_pred EEEEEecccCCC-----cCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEE
Q 009139 153 NIVFVTAEAAPY-----SKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIA 227 (542)
Q Consensus 153 kIl~Vt~e~~P~-----~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 227 (542)
||+|+.....|. ...||+++++.+|+++|+++||+|+|++......... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~----------------------- 55 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPP--I----------------------- 55 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCC--c-----------------------
Confidence 456665543332 1468999999999999999999999999754321100 0
Q ss_pred EEEeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHH
Q 009139 228 FFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVL 307 (542)
Q Consensus 228 ~~~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~ 307 (542)
....+++.+++++...... +.. ..+ ......+...+...++.. ..+||+||+|.+..++++..
T Consensus 56 --~~~~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~~~~~~~~~~~~------~~~~Div~~~~~~~~~~~~~ 118 (398)
T cd03800 56 --VELAPGVRVVRVPAGPAEY----LPK--EEL---WPYLDEFADDLLRFLRRE------GGRPDLIHAHYWDSGLVALL 118 (398)
T ss_pred --cccccceEEEecccccccC----CCh--hhc---chhHHHHHHHHHHHHHhc------CCCccEEEEecCccchHHHH
Confidence 0123566766664321100 000 000 000111222233322211 12899999999877766655
Q ss_pred HHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCcee
Q 009139 308 LASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLL 387 (542)
Q Consensus 308 l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi 387 (542)
++.. .++|+|+|.|+....... ... ...++. .......++..++.+|.|+
T Consensus 119 ~~~~-------~~~~~i~~~h~~~~~~~~------~~~-~~~~~~----------------~~~~~~~~~~~~~~ad~ii 168 (398)
T cd03800 119 LARR-------LGIPLVHTFHSLGAVKRR------HLG-AADTYE----------------PARRIEAEERLLRAADRVI 168 (398)
T ss_pred HHhh-------cCCceEEEeecccccCCc------ccc-cccccc----------------hhhhhhHHHHHHhhCCEEE
Confidence 5533 479999999986321100 000 000000 0111235567788999999
Q ss_pred ecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCC
Q 009139 388 TVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPD 467 (542)
Q Consensus 388 ~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~ 467 (542)
++|+...+.+.... .....++.+|+||+|.+.|.+.... ...+++++.+ ++
T Consensus 169 ~~s~~~~~~~~~~~---------~~~~~~~~vi~ng~~~~~~~~~~~~------------------~~~~~~~~~~--~~ 219 (398)
T cd03800 169 ASTPQEAEELYSLY---------GAYPRRIRVVPPGVDLERFTPYGRA------------------EARRARLLRD--PD 219 (398)
T ss_pred EcCHHHHHHHHHHc---------cccccccEEECCCCCccceecccch------------------hhHHHhhccC--CC
Confidence 99999888776421 1234569999999999888765321 1114445553 46
Q ss_pred CCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchh----hHHHHHHHHHHcC--CCEEEEccC--Chhhhh
Q 009139 468 CPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQ----FESWMRDTEATYK--DKYRGWVGF--NVPISH 537 (542)
Q Consensus 468 ~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~----~~~~l~~la~~~~--~~v~~~~Gy--~~~l~~ 537 (542)
+++|+|+||+.+.||++.+++|+..+.+ .+++|+++|.|... +...++.+++++. .++ .|.|+ .+++..
T Consensus 220 ~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~ 298 (398)
T cd03800 220 KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRV-DFPGRVSREDLPA 298 (398)
T ss_pred CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceE-EEeccCCHHHHHH
Confidence 7899999999999999999999999875 37999999987532 2344566666553 344 58898 456666
Q ss_pred hhhc
Q 009139 538 RITA 541 (542)
Q Consensus 538 ~~~A 541 (542)
++.+
T Consensus 299 ~~~~ 302 (398)
T cd03800 299 LYRA 302 (398)
T ss_pred HHHh
Confidence 6543
No 31
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.81 E-value=2.8e-18 Score=183.65 Aligned_cols=282 Identities=12% Similarity=-0.006 Sum_probs=167.4
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
-||++++.. .+|.+..+..++++|+++||+|+|++...+... .. ..
T Consensus 4 ~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~------~~----------------------~~ 49 (415)
T cd03816 4 KRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH------DE----------------------IL 49 (415)
T ss_pred cEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC------HH----------------------Hh
Confidence 467777752 377777889999999999999999997532210 00 01
Q ss_pred eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHH-HHHHHHHhccccCCCCCCCCCccEEEECCCch---hHHHHH
Q 009139 232 YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTL-LCYAACEAPLVLPLGGFTYGEKCIFLVNDWHA---GLVPVL 307 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~-~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~---~~~~~~ 307 (542)
...|+.++.+..+... ... ....+++.. .......+.+.+. ...+||+||+|+... ..++.+
T Consensus 50 ~~~~v~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~~l~----~~~~~Dvi~~~~~~~~~~~~~a~~ 115 (415)
T cd03816 50 SNPNITIHPLPPPPQR----LNK------LPFLLFAPLKVLWQFFSLLWLLY----KLRPADYILIQNPPSIPTLLIAWL 115 (415)
T ss_pred cCCCEEEEECCCCccc----ccc------chHHHHHHHHHHHHHHHHHHHHH----hcCCCCEEEEeCCCCchHHHHHHH
Confidence 2356777766433200 000 001111111 1111111111110 124799999997543 222222
Q ss_pred HHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCC-hhhhcccccccccccccccccchhHHHHHHHHHHhcCce
Q 009139 308 LASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLP-SEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRL 386 (542)
Q Consensus 308 l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~V 386 (542)
++.. .++|+|+|+|+..+ +. . .++.. ...+. .....+++..++.||.|
T Consensus 116 ~~~~-------~~~~~V~~~h~~~~----~~--~-~~~~~~~~~~~-----------------~~~~~~e~~~~~~ad~i 164 (415)
T cd03816 116 YCLL-------RRTKLIIDWHNYGY----TI--L-ALKLGENHPLV-----------------RLAKWYEKLFGRLADYN 164 (415)
T ss_pred HHHH-------hCCeEEEEcCCchH----HH--H-hcccCCCCHHH-----------------HHHHHHHHHHhhcCCEe
Confidence 2322 47899999998621 00 0 00100 00000 01123566677889999
Q ss_pred eecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHH--------
Q 009139 387 LTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQK-------- 458 (542)
Q Consensus 387 i~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~-------- 458 (542)
|++|+.+++.+.. . ..+++|+.+||||. .+.|.|.... ..+..+++
T Consensus 165 i~vS~~~~~~l~~-~---------~~~~~ki~vI~Ng~-~~~f~p~~~~---------------~~~~~~~~~~~~~~~~ 218 (415)
T cd03816 165 LCVTKAMKEDLQQ-F---------NNWKIRATVLYDRP-PEQFRPLPLE---------------EKHELFLKLAKTFLTR 218 (415)
T ss_pred eecCHHHHHHHHh-h---------hccCCCeeecCCCC-HHHceeCcHH---------------HHHHHHHhcccccccc
Confidence 9999999988864 1 13578999999995 4667664321 11111111
Q ss_pred -----HhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--------CCcEEEEEecCchhhHHHHHHHHHHcC-CC
Q 009139 459 -----ELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--------DDIQFVMLGSGDPQFESWMRDTEATYK-DK 524 (542)
Q Consensus 459 -----~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--------~dv~LVIvG~G~~~~~~~l~~la~~~~-~~ 524 (542)
..++. .++..+++++||+.++||++.|++|++.+.+ .+++|+|+|+|+. ++.+++++++++ ++
T Consensus 219 ~~~~~~~~~~-~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~--~~~l~~~~~~~~l~~ 295 (415)
T cd03816 219 ELRIGAVQLS-EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL--KEKYLERIKELKLKK 295 (415)
T ss_pred ccccccceec-CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc--HHHHHHHHHHcCCCc
Confidence 11222 1345678899999999999999999999863 2699999999984 778888888765 45
Q ss_pred EEEEccC--Chhhhhhhhc
Q 009139 525 YRGWVGF--NVPISHRITA 541 (542)
Q Consensus 525 v~~~~Gy--~~~l~~~~~A 541 (542)
++++.|| .+++..++.+
T Consensus 296 ~~~~~g~~~~~~~~~~l~~ 314 (415)
T cd03816 296 VTIRTPWLSAEDYPKLLAS 314 (415)
T ss_pred EEEEcCcCCHHHHHHHHHh
Confidence 6666787 4677776654
No 32
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.81 E-value=4.4e-18 Score=174.60 Aligned_cols=235 Identities=20% Similarity=0.191 Sum_probs=147.6
Q ss_pred eEEEEEecccCC--CcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEE
Q 009139 152 YNIVFVTAEAAP--YSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFF 229 (542)
Q Consensus 152 MkIl~Vt~e~~P--~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 229 (542)
|||++|++.+.| ....||+++++.+|+++|.++||+|+++++....... .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~---~------------------------- 52 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA---P------------------------- 52 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc---c-------------------------
Confidence 899999998744 2357999999999999999999999999976432100 0
Q ss_pred EeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHH
Q 009139 230 HEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLA 309 (542)
Q Consensus 230 ~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~ 309 (542)
. ... ........ ... .....+ .....+.+.++ ..+|||||+|.+...++ +.
T Consensus 53 --~---~~~--~~~~~~~~---~~~-------~~~~~~-~~~~~~~~~~~--------~~~~Divh~~~~~~~~~---~~ 103 (335)
T cd03802 53 --L---VPV--VPEPLRLD---APG-------RDRAEA-EALALAERALA--------AGDFDIVHNHSLHLPLP---FA 103 (335)
T ss_pred --e---eec--cCCCcccc---cch-------hhHhhH-HHHHHHHHHHh--------cCCCCEEEecCcccchh---hh
Confidence 0 000 00000000 000 000001 11111222221 24899999998776544 12
Q ss_pred HhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeec
Q 009139 310 SKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTV 389 (542)
Q Consensus 310 ~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~v 389 (542)
. ..++|+|+|+|+...... . . ........+.++++
T Consensus 104 ~-------~~~~~~v~~~h~~~~~~~------------~-~-------------------------~~~~~~~~~~~~~~ 138 (335)
T cd03802 104 R-------PLPVPVVTTLHGPPDPEL------------L-K-------------------------LYYAARPDVPFVSI 138 (335)
T ss_pred c-------ccCCCEEEEecCCCCccc------------c-h-------------------------HHHhhCcCCeEEEe
Confidence 1 157899999998632100 0 0 01123457889999
Q ss_pred ChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCC
Q 009139 390 SKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCP 469 (542)
Q Consensus 390 S~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~ 469 (542)
|+...+.+.. ..++.+||||+|++.|.+.. .++.
T Consensus 139 s~~~~~~~~~--------------~~~~~vi~ngvd~~~~~~~~--------------------------------~~~~ 172 (335)
T cd03802 139 SDAQRRPWPP--------------LPWVATVHNGIDLDDYPFRG--------------------------------PKGD 172 (335)
T ss_pred cHHHHhhccc--------------ccccEEecCCcChhhCCCCC--------------------------------CCCC
Confidence 9987665431 26889999999998886521 2457
Q ss_pred EEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHc---CCCEEEEccCC--hhhhhhhh
Q 009139 470 LIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATY---KDKYRGWVGFN--VPISHRIT 540 (542)
Q Consensus 470 vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~---~~~v~~~~Gy~--~~l~~~~~ 540 (542)
.|+|+||+.+.||++.+++|+.+. +++|+|+|.|+. .+.+.....+. .+++ .|.|+. +++..++.
T Consensus 173 ~i~~~Gr~~~~Kg~~~li~~~~~~---~~~l~i~G~~~~--~~~~~~~~~~~~~~~~~v-~~~G~~~~~~~~~~~~ 242 (335)
T cd03802 173 YLLFLGRISPEKGPHLAIRAARRA---GIPLKLAGPVSD--PDYFYREIAPELLDGPDI-EYLGEVGGAEKAELLG 242 (335)
T ss_pred EEEEEEeeccccCHHHHHHHHHhc---CCeEEEEeCCCC--HHHHHHHHHHhcccCCcE-EEeCCCCHHHHHHHHH
Confidence 899999999999999999998654 799999999964 33344433333 4565 588983 44555543
No 33
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.81 E-value=5.9e-18 Score=180.66 Aligned_cols=177 Identities=16% Similarity=0.222 Sum_probs=124.4
Q ss_pred CCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhccccccccccccccccc
Q 009139 289 GEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALD 368 (542)
Q Consensus 289 ~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~ 368 (542)
.+||+||+|.++++....+++.... .+.|+++|+|+.+... .. .. ..+
T Consensus 117 ~~~diihaH~~~~~~~~~~~~~~~~-----~~~~~~~t~Hg~d~~~---~~------~~-~~~----------------- 164 (406)
T PRK15427 117 FVADVFIAHFGPAGVTAAKLRELGV-----LRGKIATIFHGIDISS---RE------VL-NHY----------------- 164 (406)
T ss_pred CCCCEEEEcCChHHHHHHHHHHhCC-----CCCCeEEEEccccccc---ch------hh-hhh-----------------
Confidence 4799999999887766665543211 2456788999863210 00 00 000
Q ss_pred chhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccch
Q 009139 369 TGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG 448 (542)
Q Consensus 369 ~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~ 448 (542)
....+..++.+|.|+++|+..++.+... | .+++|+.+||||||.+.|.+....
T Consensus 165 ----~~~~~~~~~~ad~vv~~S~~~~~~l~~~----g------~~~~ki~vi~nGvd~~~f~~~~~~------------- 217 (406)
T PRK15427 165 ----TPEYQQLFRRGDLMLPISDLWAGRLQKM----G------CPPEKIAVSRMGVDMTRFSPRPVK------------- 217 (406)
T ss_pred ----hHHHHHHHHhCCEEEECCHHHHHHHHHc----C------CCHHHEEEcCCCCCHHHcCCCccc-------------
Confidence 0123456788999999999998887641 1 346899999999999888654210
Q ss_pred hHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC-CCE
Q 009139 449 KVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK-DKY 525 (542)
Q Consensus 449 k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~-~~v 525 (542)
...+...|+|+||+.++||++.|++|++.+.+ .+++|+|+|+|+ +++++++++++++ .+.
T Consensus 218 ---------------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~--~~~~l~~~~~~~~l~~~ 280 (406)
T PRK15427 218 ---------------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP--WERRLRTLIEQYQLEDV 280 (406)
T ss_pred ---------------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch--hHHHHHHHHHHcCCCCe
Confidence 01244679999999999999999999999875 379999999997 4778888888764 233
Q ss_pred EEEccCC--hhhhhhhhc
Q 009139 526 RGWVGFN--VPISHRITA 541 (542)
Q Consensus 526 ~~~~Gy~--~~l~~~~~A 541 (542)
+.|.|+. +++..++.+
T Consensus 281 V~~~G~~~~~el~~~l~~ 298 (406)
T PRK15427 281 VEMPGFKPSHEVKAMLDD 298 (406)
T ss_pred EEEeCCCCHHHHHHHHHh
Confidence 4689984 567776654
No 34
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.80 E-value=8.2e-18 Score=178.59 Aligned_cols=283 Identities=19% Similarity=0.207 Sum_probs=157.3
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
|||+|...|++. ..+|+++|+++||+|+|+|+......
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~--------------------------------- 38 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPP--------------------------------- 38 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCC---------------------------------
Confidence 689998876542 47899999999999999997642210
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
..|++++++..+....+ ..+. |............++.+.+..+...+ .+|||||+|.... .+.+++..+
T Consensus 39 ~~~v~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pdvi~~h~~~~--~~~~l~~~~ 107 (396)
T cd03818 39 PGGVRVVRYRPPRGPTS-GTHP-----YLREFEEAVLRGQAVARALLALRAKG---FRPDVIVAHPGWG--ETLFLKDVW 107 (396)
T ss_pred CCCeeEEEecCCCCCCC-CCCc-----cchhHHHHHHHHHHHHHHHHHHHhcC---CCCCEEEECCccc--hhhhHHHhC
Confidence 01466666653322111 1111 11112111111222222222221112 3899999996432 122333332
Q ss_pred CCCCCCCCCcEEEEecCCCc-CCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 313 RPHGVYKDARSILVIHNLSH-QGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~-~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.++|+|.+.|-... .|.. .+........... .. ............+..+|.||++|+
T Consensus 108 ------~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~ad~vi~~s~ 165 (396)
T cd03818 108 ------PDAPLIGYFEFYYRAEGAD-------VGFDPEFPPSLDD----AL-----RLRNRNALILLALAQADAGVSPTR 165 (396)
T ss_pred ------CCCCEEEEEeeeecCCCCC-------CCCCCCCCCchhH----HH-----HHHHhhhHhHHHHHhCCEEECCCH
Confidence 46888887763210 0100 0000000000000 00 000111124467889999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
..++.+... ..+++.+||||||++.|.|.... ....+...++. ++.++|
T Consensus 166 ~~~~~~~~~------------~~~ki~vI~ngvd~~~f~~~~~~-----------------~~~~~~~~~~~--~~~~~i 214 (396)
T cd03818 166 WQRSTFPAE------------LRSRISVIHDGIDTDRLRPDPQA-----------------RLRLPNGRVLT--PGDEVI 214 (396)
T ss_pred HHHhhCcHh------------hccceEEeCCCccccccCCCchh-----------------hhcccccccCC--CCCeEE
Confidence 887765421 24789999999999999875321 11122222232 467899
Q ss_pred EEEcc-CccccCHHHHHHHHHhhhc--CCcEEEEEecCchh----------hHHH-HHHHHHHcCCCEEEEccCC--hhh
Q 009139 472 GFIGR-LDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQ----------FESW-MRDTEATYKDKYRGWVGFN--VPI 535 (542)
Q Consensus 472 lfVGR-l~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~----------~~~~-l~~la~~~~~~v~~~~Gy~--~~l 535 (542)
+|+|| +.++||++.|++|++.+.+ .+++|+|+|++... +.+. ++++..++....+.|+|+. +++
T Consensus 215 ~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~ 294 (396)
T cd03818 215 TFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQY 294 (396)
T ss_pred EEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHH
Confidence 99998 9999999999999999875 48999999974211 2222 3333322222334688984 567
Q ss_pred hhhhhc
Q 009139 536 SHRITA 541 (542)
Q Consensus 536 ~~~~~A 541 (542)
..++.+
T Consensus 295 ~~~l~~ 300 (396)
T cd03818 295 LALLQV 300 (396)
T ss_pred HHHHHh
Confidence 766654
No 35
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.80 E-value=1.7e-17 Score=171.91 Aligned_cols=263 Identities=19% Similarity=0.198 Sum_probs=156.7
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++.+++|. ..||+++++.+|+++|+++||+|+|+|+....... ...
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-----------------------------~~~ 50 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-----------------------------ETE 50 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-----------------------------ccc
Confidence 699998776553 47999999999999999999999999975322100 012
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
.+|++++.++.+... ... ...+.+ .......+ . ..++|+||........+..++. .
T Consensus 51 ~~~i~~~~~~~~~~~----~~~---------~~~~~~--~~~~~~~~--~-----~~~~~~i~~~~~~~~~~~~~~~--~ 106 (363)
T cd04955 51 YNGVRLIHIPAPEIG----GLG---------TIIYDI--LAILHALF--V-----KRDIDHVHALGPAIAPFLPLLR--L 106 (363)
T ss_pred cCCceEEEcCCCCcc----chh---------hhHHHH--HHHHHHHh--c-----cCCeEEEEecCccHHHHHHHHH--h
Confidence 357777776433210 000 000101 01111111 0 1255566555433322211111 1
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
.+.|+|+++|+..+.... .+. +.. ......++.+++.+|.|+++|+.
T Consensus 107 ------~~~~~v~~~h~~~~~~~~-------~~~---~~~-----------------~~~~~~~~~~~~~ad~ii~~s~~ 153 (363)
T cd04955 107 ------KGKKVVVNMDGLEWKRAK-------WGR---PAK-----------------RYLKFGEKLAVKFADRLIADSPG 153 (363)
T ss_pred ------cCCCEEEEccCcceeecc-------ccc---chh-----------------HHHHHHHHHHHhhccEEEeCCHH
Confidence 478999999986421100 000 000 00112445677889999999999
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
.++.+....+ ..+ .+||||+|...+.+. ...+++++++ +.+.|+
T Consensus 154 ~~~~~~~~~~-----------~~~-~~i~ngv~~~~~~~~---------------------~~~~~~~~~~---~~~~i~ 197 (363)
T cd04955 154 IKEYLKEKYG-----------RDS-TYIPYGADHVVSSEE---------------------DEILKKYGLE---PGRYYL 197 (363)
T ss_pred HHHHHHHhcC-----------CCC-eeeCCCcChhhcchh---------------------hhhHHhcCCC---CCcEEE
Confidence 9888754211 122 799999998766431 1234455553 346788
Q ss_pred EEccCccccCHHHHHHHHHhhhcCCcEEEEEecCch--hhHHHHHHHHHHcCCCEEEEccC--Chhhhhhhhc
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDP--QFESWMRDTEATYKDKYRGWVGF--NVPISHRITA 541 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~--~~~~~l~~la~~~~~~v~~~~Gy--~~~l~~~~~A 541 (542)
|+||+.+.||++.|++|++++.. +++|+++|+|+. .+.+.+++. ....++| .|+|+ ++++..++.+
T Consensus 198 ~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~~~~~~~~~~~-~~~~~~V-~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 198 LVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHNTPYGKLLKEK-AAADPRI-IFVGPIYDQELLELLRY 267 (363)
T ss_pred EEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCcchHHHHHHHH-hCCCCcE-EEccccChHHHHHHHHh
Confidence 99999999999999999998864 899999999853 233333321 1234555 58897 4556666543
No 36
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.78 E-value=3.6e-17 Score=168.95 Aligned_cols=258 Identities=18% Similarity=0.178 Sum_probs=162.3
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++|+..|+|. .||+++++.+|+++|.++||+|+|++........ . ..
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~--------------------------~~ 49 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGR---D--------------------------EE 49 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcch---h--------------------------hh
Confidence 799999998884 6999999999999999999999999975322110 0 01
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
..+.+++.++... .. .... + ...++. ... + ...+|||||+|............ .
T Consensus 50 ~~~~~~~~~~~~~--~~-~~~~-----~-----~~~~~~--~~~----~-----~~~~~Dii~~~~~~~~~~~~~~~--~ 103 (357)
T cd03795 50 RNGHRVIRAPSLL--NV-ASTP-----F-----SPSFFK--QLK----K-----LAKKADVIHLHFPNPLADLALLL--L 103 (357)
T ss_pred ccCceEEEeeccc--cc-cccc-----c-----cHHHHH--HHH----h-----cCCCCCEEEEecCcchHHHHHHH--h
Confidence 1233433332111 00 0000 0 000111 011 1 12489999999754432221111 1
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
..++|+++++|+...... ..... ...+++..+..+|.|+++|+.
T Consensus 104 -----~~~~~~i~~~h~~~~~~~----------~~~~~---------------------~~~~~~~~~~~~d~vi~~s~~ 147 (357)
T cd03795 104 -----PRKKPVVVHWHSDIVKQK----------LLLKL---------------------YRPLQRRFLRRADAIVATSPN 147 (357)
T ss_pred -----ccCceEEEEEcChhhccc----------hhhhh---------------------hhHHHHHHHHhcCEEEeCcHH
Confidence 137899999997521110 00001 012456678899999999999
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
+.+.+.... ....++.+||||+|.+.+.+.... +. .....+ .+.++|+
T Consensus 148 ~~~~~~~~~----------~~~~~~~~i~~gi~~~~~~~~~~~-----------------~~---~~~~~~--~~~~~i~ 195 (357)
T cd03795 148 YAETSPVLR----------RFRDKVRVIPLGLDPARYPRPDAL-----------------EE---AIWRRA--AGRPFFL 195 (357)
T ss_pred HHHHHHHhc----------CCccceEEecCCCChhhcCCcchh-----------------hh---HhhcCC--CCCcEEE
Confidence 888665321 124789999999999887654210 11 112222 3678999
Q ss_pred EEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHc--CCCEEEEccCC--hhhhhhhh
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATY--KDKYRGWVGFN--VPISHRIT 540 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~--~~~v~~~~Gy~--~~l~~~~~ 540 (542)
|+||+.+.||++.+++|++++. +++|+|+|+|+. .+.++++++++ ..+| .++|+. +++.+++.
T Consensus 196 ~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~~--~~~~~~~~~~~~~~~~V-~~~g~v~~~~~~~~~~ 262 (357)
T cd03795 196 FVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGPL--EAELEALAAALGLLDRV-RFLGRLDDEEKAALLA 262 (357)
T ss_pred EecccccccCHHHHHHHHHhcc--CcEEEEEeCChh--HHHHHHHHHhcCCcceE-EEcCCCCHHHHHHHHH
Confidence 9999999999999999999986 899999999973 56777777544 3455 688984 44666654
No 37
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.77 E-value=9e-17 Score=165.60 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=173.0
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++|+..++|. .||.+.++..++++|+++||+|+++++........ .. .. .....
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~--~~------------------~~--~~~~~ 56 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGK--IY------------------KG--YKREE 56 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccc--cc------------------cc--ceEEe
Confidence 799999988774 49999999999999999999999999764321100 00 00 01123
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCch-hHHHHHHHHh
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHA-GLVPVLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~-~~~~~~l~~~ 311 (542)
.++++++.++....... ..+ .....+..+.......... ...+||+||+|.+.. ...+......
T Consensus 57 ~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~------~~~~~D~v~~~~~~~~~~~~~~~~~~ 121 (394)
T cd03794 57 VDGVRVHRVPLPPYKKN-GLL--------KRLLNYLSFALSALLALLK------RRRRPDVIIATSPPLLIALAALLLAR 121 (394)
T ss_pred cCCeEEEEEecCCCCcc-chH--------HHHHhhhHHHHHHHHHHHh------cccCCCEEEEcCChHHHHHHHHHHHH
Confidence 46777776643321110 000 0111222222222222210 124899999997322 2222222222
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
. .++|+|+++|+.. +............... ......+++..++.+|.++++|+
T Consensus 122 ~------~~~~~i~~~h~~~-----~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~d~vi~~s~ 174 (394)
T cd03794 122 L------KGAPFVLEVRDLW-----PESAVALGLLKNGSLL----------------YRLLRKLERLIYRRADAIVVISP 174 (394)
T ss_pred h------cCCCEEEEehhhc-----chhHHHccCccccchH----------------HHHHHHHHHHHHhcCCEEEEECH
Confidence 1 4789999999862 1110000000000000 00112356677889999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
.+++.+... .....++.+||||+|...+.+.... .. +.++... .+..+|
T Consensus 175 ~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~-~~~~~~~--~~~~~i 223 (394)
T cd03794 175 GMREYLVRR----------GVPPEKISVIPNGVDLELFKPPPAD------------------ES-LRKELGL--DDKFVV 223 (394)
T ss_pred HHHHHHHhc----------CCCcCceEEcCCCCCHHHcCCccch------------------hh-hhhccCC--CCcEEE
Confidence 998877521 1346789999999998777654321 01 2333332 467899
Q ss_pred EEEccCccccCHHHHHHHHHhhhcC-CcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccCC--hhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILAD-DIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGFN--VPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~~-dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy~--~~l~~~~~A 541 (542)
+|+|++.++||++.+++|+.++.+. +++|+|+|+|+. .+.++++..... .++ .+.|+. +++..++.+
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~ 294 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPE--KEELKELAKALGLDNV-TFLGRVPKEELPELLAA 294 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCccc--HHHHHHHHHHcCCCcE-EEeCCCChHHHHHHHHh
Confidence 9999999999999999999998765 899999999874 455666444332 455 577763 566665543
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.77 E-value=2e-16 Score=177.33 Aligned_cols=186 Identities=13% Similarity=0.154 Sum_probs=119.7
Q ss_pred CCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEE-EecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccc
Q 009139 289 GEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSIL-VIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHAL 367 (542)
Q Consensus 289 ~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~-TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~ 367 (542)
.+|||||+|...+.+++.+++.. .++|+|+ +.|+... ... +..+ ..
T Consensus 399 ~kpDIVH~h~~~a~~lg~lAa~~-------~gvPvIv~t~h~~~~-~~~----------~~~~-~~-------------- 445 (694)
T PRK15179 399 SVPSVVHIWQDGSIFACALAALL-------AGVPRIVLSVRTMPP-VDR----------PDRY-RV-------------- 445 (694)
T ss_pred cCCcEEEEeCCcHHHHHHHHHHH-------cCCCEEEEEeCCCcc-ccc----------hhHH-HH--------------
Confidence 48999999998877776665543 4678866 6675421 000 0001 00
Q ss_pred cchhHHHHHHHHHHhc--CceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccc
Q 009139 368 DTGEAVNVLKGAIVTA--DRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDD 445 (542)
Q Consensus 368 ~~~~~~~~~k~~l~~a--d~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d 445 (542)
........+..+ +.++++|...++.+... +..+.+|+.|||||||.+.|.+...
T Consensus 446 ----~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~---------~g~~~~kI~VI~NGVd~~~f~~~~~----------- 501 (694)
T PRK15179 446 ----EYDIIYSELLKMRGVALSSNSQFAAHRYADW---------LGVDERRIPVVYNGLAPLKSVQDDA----------- 501 (694)
T ss_pred ----HHHHHHHHHHhcCCeEEEeCcHHHHHHHHHH---------cCCChhHEEEECCCcCHHhcCCCch-----------
Confidence 000001112333 45566666666665432 1245689999999999888865321
Q ss_pred cchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC-
Q 009139 446 LSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK- 522 (542)
Q Consensus 446 ~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~- 522 (542)
.+. .+.++.....++.++|+++||+.++||++.|++|+.++.+ .+++|+|+|+|+ +.+.+++++++++
T Consensus 502 ------~~~-~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~--~~~~L~~l~~~lgL 572 (694)
T PRK15179 502 ------CTA-MMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP--LLESVREFAQRLGM 572 (694)
T ss_pred ------hhH-HHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc--chHHHHHHHHHcCC
Confidence 111 1112221112356799999999999999999999998875 479999999997 4778888888765
Q ss_pred -CCEEEEccCChhhhhhhhc
Q 009139 523 -DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 523 -~~v~~~~Gy~~~l~~~~~A 541 (542)
++| .|+||.+++..++.+
T Consensus 573 ~~~V-~flG~~~dv~~ll~a 591 (694)
T PRK15179 573 GERI-LFTGLSRRVGYWLTQ 591 (694)
T ss_pred CCcE-EEcCCcchHHHHHHh
Confidence 445 699999888887765
No 39
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.76 E-value=5.7e-17 Score=165.85 Aligned_cols=263 Identities=18% Similarity=0.122 Sum_probs=171.0
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||+++++.+.+ ||.++++..|+++|.+.||+|.+++...... +... ..
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~------~~~~----------------------~~ 48 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGE------LGEE----------------------LE 48 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchh------hhHH----------------------HH
Confidence 68999987644 9999999999999999999999998653211 1000 01
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
..+++++.+..+... . .... ...+.+.++ ..+||+||+|.+...+...+.....
T Consensus 49 ~~~i~v~~~~~~~~~-----~---------~~~~----~~~~~~~~~--------~~~~div~~~~~~~~~~~~~~~~~~ 102 (365)
T cd03807 49 EAGVPVYCLGKRPGR-----P---------DPGA----LLRLYKLIR--------RLRPDVVHTWMYHADLYGGLAARLA 102 (365)
T ss_pred hcCCeEEEEeccccc-----c---------cHHH----HHHHHHHHH--------hhCCCEEEeccccccHHHHHHHHhc
Confidence 135666555432210 0 0111 111222221 2489999999877665555444321
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
.++|+++++|+...... .+... ....+.+.....+|.++++|+.
T Consensus 103 ------~~~~~i~~~~~~~~~~~-------------~~~~~-----------------~~~~~~~~~~~~~~~~i~~s~~ 146 (365)
T cd03807 103 ------GVPPVIWGIRHSDLDLG-------------KKSTR-----------------LVARLRRLLSSFIPLIVANSAA 146 (365)
T ss_pred ------CCCcEEEEecCCccccc-------------chhHh-----------------HHHHHHHHhccccCeEEeccHH
Confidence 47899999998732100 00000 0012334445678999999998
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
..+.+... | ....++.+++||+|...|.+... .+..++++++++ ++.++|+
T Consensus 147 ~~~~~~~~----~------~~~~~~~vi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~i~ 197 (365)
T cd03807 147 AAEYHQAI----G------YPPKKIVVIPNGVDTERFSPDLD-----------------ARARLREELGLP--EDTFLIG 197 (365)
T ss_pred HHHHHHHc----C------CChhheeEeCCCcCHHhcCCccc-----------------chHHHHHhcCCC--CCCeEEE
Confidence 88777642 1 24578999999999887766432 234566788886 4678999
Q ss_pred EEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHH-Hc--CCCEEEEccCChhhhhhhhc
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEA-TY--KDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~-~~--~~~v~~~~Gy~~~l~~~~~A 541 (542)
++||+.+.||++.+++|+..+.+ .+++|+|+|.|+. ...++.... ++ .+++ .+.|..+++..++.+
T Consensus 198 ~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~ 268 (365)
T cd03807 198 IVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPD--RANLELLALKELGLEDKV-ILLGERSDVPALLNA 268 (365)
T ss_pred EecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcc--hhHHHHHHHHhcCCCceE-EEccccccHHHHHHh
Confidence 99999999999999999999875 4899999999864 333444433 32 3444 578887777776643
No 40
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.76 E-value=1.5e-16 Score=163.59 Aligned_cols=269 Identities=20% Similarity=0.244 Sum_probs=165.7
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++..|+|. .||.+.++..++++|+++||+|+++++......... .
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-----------------------------~ 49 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE-----------------------------E 49 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc-----------------------------c
Confidence 699999998884 599999999999999999999999998754321100 0
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchh-HHHHHHHHh
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAG-LVPVLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~-~~~~~l~~~ 311 (542)
...+.........+.+ + ...+.. ........+ ..+||+||+|..... ..+..+...
T Consensus 50 ~~~~~~~~~~~~~~~~----~----------~~~~~~-~~~~~~~~~--------~~~~Div~~~~~~~~~~~~~~~~~~ 106 (374)
T cd03817 50 VVVVRPFRVPTFKYPD----F----------RLPLPI-PRALIIILK--------ELGPDIVHTHTPFSLGLLGLRVARK 106 (374)
T ss_pred cccccccccccchhhh----h----------hccccH-HHHHHHHHh--------hcCCCEEEECCchhhhhHHHHHHHH
Confidence 0011111100000000 0 000001 111111111 248999999975332 222222222
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHH-HHHHHHHHhcCceeecC
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAV-NVLKGAIVTADRLLTVS 390 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~k~~l~~ad~Vi~vS 390 (542)
.++|+|+++|+... .............. .... .+++..+..+|.++++|
T Consensus 107 -------~~~~~i~~~~~~~~------~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~d~i~~~s 156 (374)
T cd03817 107 -------LGIPVVATYHTMYE------DYTHYVPLGRLLAR-----------------AVVRRKLSRRFYNRCDAVIAPS 156 (374)
T ss_pred -------cCCCEEEEecCCHH------HHHHHHhcccchhH-----------------HHHHHHHHHHHhhhCCEEEecc
Confidence 47999999997621 00000000000000 0111 35667788999999999
Q ss_pred hhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCE
Q 009139 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPL 470 (542)
Q Consensus 391 ~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~v 470 (542)
+.+++.+... + ...++.++|||+|...+.+... ...++.+++. ++.++
T Consensus 157 ~~~~~~~~~~----~-------~~~~~~vi~~~~~~~~~~~~~~-------------------~~~~~~~~~~--~~~~~ 204 (374)
T cd03817 157 EKIADLLREY----G-------VKRPIEVIPTGIDLDRFEPVDG-------------------DDERRKLGIP--EDEPV 204 (374)
T ss_pred HHHHHHHHhc----C-------CCCceEEcCCccchhccCccch-------------------hHHHHhcCCC--CCCeE
Confidence 9987776531 1 2456899999999988765421 1225566654 46789
Q ss_pred EEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCC--hhhhhhhh
Q 009139 471 IGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFN--VPISHRIT 540 (542)
Q Consensus 471 IlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~--~~l~~~~~ 540 (542)
|+++||+.+.||++.+++|++.+.+ .+++|+++|.|+. .+.++++++++. +++ .+.|+- +++..++.
T Consensus 205 i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~ 277 (374)
T cd03817 205 LLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE--REELEELARELGLADRV-IFTGFVPREELPDYYK 277 (374)
T ss_pred EEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHHcCCCCcE-EEeccCChHHHHHHHH
Confidence 9999999999999999999999875 5899999999873 667777776543 445 578874 55655554
No 41
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.76 E-value=6.9e-17 Score=169.92 Aligned_cols=261 Identities=15% Similarity=0.076 Sum_probs=152.1
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++..+ ..||+++++.++++.|.+.||+|+++++..... .|... + .+ ...
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~-~-----~~------------~~~ 53 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPE-----FFNVT-K-----KF------------HNA 53 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChh-----HHHHH-H-----Hh------------hHh
Confidence 699998764 359999999999999999999999999753211 11100 0 00 000
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
..|.+. . .+.. .+..+ ........... ....+|||||+|++....++.. ..
T Consensus 54 ~~g~~~-~-------------------~~~~-~~~~~-~~~~~~~~~~~----~~~~~~Dvv~~h~~~~~~~~~~--~~- 104 (372)
T cd03792 54 LQGADI-E-------------------LSEE-EKEIY-LEWNEENAERP----LLDLDADVVVIHDPQPLALPLF--KK- 104 (372)
T ss_pred hcCCCC-C-------------------CCHH-HHHHH-HHHHHHHhccc----cccCCCCEEEECCCCchhHHHh--hh-
Confidence 011111 0 0111 11111 11111111101 1134899999998874333221 11
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
..++|+|++.|+... .+. ... ..+.+..+..+|.++++|+.
T Consensus 105 -----~~~~~~i~~~H~~~~---~~~---------~~~----------------------~~~~~~~~~~~d~~i~~~~~ 145 (372)
T cd03792 105 -----KRGRPWIWRCHIDLS---SPN---------RRV----------------------WDFLQPYIEDYDAAVFHLPE 145 (372)
T ss_pred -----cCCCeEEEEeeeecC---CCc---------HHH----------------------HHHHHHHHHhCCEEeecHHH
Confidence 137899999997521 000 000 01234456779999888843
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCC-CCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNP-SSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p-~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
+... + ....++ +||||||...... ... ...+..+++++|++ +++++|
T Consensus 146 ~~~~--------~------~~~~~~-vipngvd~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~i 193 (372)
T cd03792 146 YVPP--------Q------VPPRKV-IIPPSIDPLSGKNRELS---------------PADIEYILEKYGID--PERPYI 193 (372)
T ss_pred hcCC--------C------CCCceE-EeCCCCCCCccccCCCC---------------HHHHHHHHHHhCCC--CCCcEE
Confidence 3211 1 123455 9999999753211 110 12355678889985 478999
Q ss_pred EEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCch---hhHHHHHHHHHH--cCCCEEEEccCC----hhhhhhhh
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDP---QFESWMRDTEAT--YKDKYRGWVGFN----VPISHRIT 540 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~---~~~~~l~~la~~--~~~~v~~~~Gy~----~~l~~~~~ 540 (542)
+++||+.++||++.|++|++.+.+ .+++|+|+|+|+. ...+.++++.+. ..+++. |+|+. +++..++.
T Consensus 194 ~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~ 272 (372)
T cd03792 194 TQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIH-VLTLPPVSDLEVNALQR 272 (372)
T ss_pred EEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeE-EEecCCCCHHHHHHHHH
Confidence 999999999999999999999875 4799999999853 223334444433 334554 66654 56766665
Q ss_pred c
Q 009139 541 A 541 (542)
Q Consensus 541 A 541 (542)
+
T Consensus 273 ~ 273 (372)
T cd03792 273 A 273 (372)
T ss_pred h
Confidence 4
No 42
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.76 E-value=1.6e-16 Score=163.19 Aligned_cols=273 Identities=20% Similarity=0.208 Sum_probs=163.4
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++|++.+.| ..||.+.++.+|+++|++.||+|+|+++....... .. .
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~--------------------------~ 49 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPL---LV--------------------------A 49 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccc---hh--------------------------h
Confidence 79999998877 56999999999999999999999999976432110 00 0
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCC-chhHHHHHHHHh
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDW-HAGLVPVLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~-~~~~~~~~l~~~ 311 (542)
....+....... ... ... .... .+.......... ...++|+||+|+. ............
T Consensus 50 ~~~~~~~~~~~~-~~~---~~~---------~~~~-~~~~~~~~~~~~------~~~~~dii~~~~~~~~~~~~~~~~~~ 109 (375)
T cd03821 50 LNGVPVKLFSIN-VAY---GLN---------LARY-LFPPSLLAWLRL------NIREADIVHVHGLWSYPSLAAARAAR 109 (375)
T ss_pred ccCceeeecccc-hhh---hhh---------hhhh-ccChhHHHHHHH------hCCCCCEEEEecccchHHHHHHHHHH
Confidence 000010000000 000 000 0000 000000001100 1247999999973 322222221111
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
..++|+|++.|+.......+ ...+.. ........+..+..++.++++|.
T Consensus 110 ------~~~~~~i~~~~~~~~~~~~~----------~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 110 ------KYGIPYVVSPHGMLDPWALP----------HKALKK---------------RLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred ------HhCCCEEEEccccccccccc----------cchhhh---------------HHHHHHHHHHHHhcCCEEEECCH
Confidence 14789999999863111000 000000 00011234556778999999997
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
......... ....++.+||||+|.+.|.+... ... ++.++.+ ++.++|
T Consensus 159 ~~~~~~~~~-----------~~~~~~~vi~~~~~~~~~~~~~~------------------~~~-~~~~~~~--~~~~~i 206 (375)
T cd03821 159 QEAAEIRRL-----------GLKAPIAVIPNGVDIPPFAALPS------------------RGR-RRKFPIL--PDKRII 206 (375)
T ss_pred HHHHHHHhh-----------CCcccEEEcCCCcChhccCcchh------------------hhh-hhhccCC--CCCcEE
Confidence 766555421 23578999999999988866421 111 5556654 477899
Q ss_pred EEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHc--CCCEEEEccCCh--hhhhhhh
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATY--KDKYRGWVGFNV--PISHRIT 540 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~--~~~v~~~~Gy~~--~l~~~~~ 540 (542)
+|+||+.++||++.+++|+..+.+ .+++|+++|.++..+...++.+++++ .+++ .+.|+.. ++..++.
T Consensus 207 ~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~ 280 (375)
T cd03821 207 LFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRV-TFTGMLYGEDKAAALA 280 (375)
T ss_pred EEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceE-EEcCCCChHHHHHHHh
Confidence 999999999999999999999976 48999999998766666677664554 3455 5889854 6666554
No 43
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.74 E-value=8.4e-17 Score=168.69 Aligned_cols=240 Identities=14% Similarity=0.121 Sum_probs=147.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHC--CCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAAR--GHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFF 229 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~--GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 229 (542)
|||+++++. .| ..||+++++.+++++|.++ ||+|.++++..... ..+.....
T Consensus 1 mkI~~~~~~-~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~----~~~~~~~~------------------- 54 (359)
T PRK09922 1 MKIAFIGEA-VS--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMD----KAWLKEIK------------------- 54 (359)
T ss_pred CeeEEeccc-cc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCC----hHHHHhcc-------------------
Confidence 899999864 44 3599999999999999999 89999999764321 00100000
Q ss_pred EeeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHH
Q 009139 230 HEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLA 309 (542)
Q Consensus 230 ~~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~ 309 (542)
....++...+ +. +. ... . ...+.+.++ ..+|||||+|+....+++.+++
T Consensus 55 --~~~~~~~~~~--~~-------~~-----~~~---~----~~~l~~~l~--------~~~~Dii~~~~~~~~~~~~~~~ 103 (359)
T PRK09922 55 --YAQSFSNIKL--SF-------LR-----RAK---H----VYNFSKWLK--------ETQPDIVICIDVISCLYANKAR 103 (359)
T ss_pred --hhcccccchh--hh-------hc-----ccH---H----HHHHHHHHH--------hcCCCEEEEcCHHHHHHHHHHH
Confidence 0000000000 00 00 000 0 011122221 2489999999866555544444
Q ss_pred HhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeec
Q 009139 310 SKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTV 389 (542)
Q Consensus 310 ~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~v 389 (542)
.... ...+++.+.|... .. .... ....+..+|.++++
T Consensus 104 ~~~~-----~~~~~~~~~h~~~-----~~----------~~~~-----------------------~~~~~~~~d~~i~~ 140 (359)
T PRK09922 104 KKSG-----KQFKIFSWPHFSL-----DH----------KKHA-----------------------ECKKITCADYHLAI 140 (359)
T ss_pred HHhC-----CCCeEEEEecCcc-----cc----------cchh-----------------------hhhhhhcCCEEEEc
Confidence 3321 2345676677431 00 0000 00013569999999
Q ss_pred ChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCC
Q 009139 390 SKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCP 469 (542)
Q Consensus 390 S~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~ 469 (542)
|+..++.+... | .+.+++.+||||+|.+.+..... ..++.+
T Consensus 141 S~~~~~~~~~~----~------~~~~ki~vi~N~id~~~~~~~~~-----------------------------~~~~~~ 181 (359)
T PRK09922 141 SSGIKEQMMAR----G------ISAQRISVIYNPVEIKTIIIPPP-----------------------------ERDKPA 181 (359)
T ss_pred CHHHHHHHHHc----C------CCHHHEEEEcCCCCHHHccCCCc-----------------------------ccCCCc
Confidence 99998887642 1 24578999999999655432110 012568
Q ss_pred EEEEEccCc--cccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCChh
Q 009139 470 LIGFIGRLD--YQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFNVP 534 (542)
Q Consensus 470 vIlfVGRl~--~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~~~ 534 (542)
+|+|+||+. ++||++.+++|++.+.. +++|+|+|+|+. .+.+++++++++ ++| .|.||.++
T Consensus 182 ~i~~~Grl~~~~~k~~~~l~~a~~~~~~-~~~l~ivG~g~~--~~~l~~~~~~~~l~~~v-~f~G~~~~ 246 (359)
T PRK09922 182 VFLYVGRLKFEGQKNVKELFDGLSQTTG-EWQLHIIGDGSD--FEKCKAYSRELGIEQRI-IWHGWQSQ 246 (359)
T ss_pred EEEEEEEEecccCcCHHHHHHHHHhhCC-CeEEEEEeCCcc--HHHHHHHHHHcCCCCeE-EEecccCC
Confidence 999999997 46999999999998753 799999999974 677888887654 455 68998654
No 44
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.74 E-value=1.3e-16 Score=166.09 Aligned_cols=178 Identities=13% Similarity=0.160 Sum_probs=124.6
Q ss_pred CCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhccccccccccccccccc
Q 009139 289 GEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALD 368 (542)
Q Consensus 289 ~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~ 368 (542)
.+|||||+|....++....++.. .++|+|+|+|+........ ......
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~-------~~~p~i~~~h~~~~~~~~~----------~~~~~~--------------- 128 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARR-------LGVPLVVTFHGFDATTSLA----------LLLRSR--------------- 128 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHH-------cCCCEEEEEeCccccccch----------hhcccc---------------
Confidence 48999999976555544444332 4799999999753211000 000000
Q ss_pred chhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccch
Q 009139 369 TGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG 448 (542)
Q Consensus 369 ~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~ 448 (542)
......+++..++.+|.|+++|+.+++.+... | .++.++.+++||+|.+.|.+...
T Consensus 129 ~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~----~------~~~~~i~vi~~g~d~~~~~~~~~-------------- 184 (367)
T cd05844 129 WALYARRRRRLARRAALFIAVSQFIRDRLLAL----G------FPPEKVHVHPIGVDTAKFTPATP-------------- 184 (367)
T ss_pred hhHHHHHHHHHHHhcCEEEECCHHHHHHHHHc----C------CCHHHeEEecCCCCHHhcCCCCC--------------
Confidence 00112345567788999999999998887642 1 24678999999999887765421
Q ss_pred hHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHc--CCC
Q 009139 449 KVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATY--KDK 524 (542)
Q Consensus 449 k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~--~~~ 524 (542)
..+.++|+|+||+.+.||++.+++|++.+.+ .+++|+|+|+|+ +.++++++++++ .++
T Consensus 185 ----------------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~ 246 (367)
T cd05844 185 ----------------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGP--LLAALEALARALGLGGR 246 (367)
T ss_pred ----------------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCch--HHHHHHHHHHHcCCCCe
Confidence 1256799999999999999999999999875 489999999987 467788888774 455
Q ss_pred EEEEccCC--hhhhhhhhc
Q 009139 525 YRGWVGFN--VPISHRITA 541 (542)
Q Consensus 525 v~~~~Gy~--~~l~~~~~A 541 (542)
+ .|.|+. +++..++.+
T Consensus 247 v-~~~g~~~~~~l~~~~~~ 264 (367)
T cd05844 247 V-TFLGAQPHAEVRELMRR 264 (367)
T ss_pred E-EECCCCCHHHHHHHHHh
Confidence 5 688984 567766654
No 45
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.73 E-value=6.3e-16 Score=159.55 Aligned_cols=248 Identities=16% Similarity=0.120 Sum_probs=158.9
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++..|+| |.+.++.+++++|.++||+|+|+++......... . ...
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~----~----------------------~~~ 49 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVH----P----------------------EDR 49 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccc----c----------------------ccc
Confidence 69999987644 3789999999999999999999997643211000 0 000
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
.....+ . |. .....+..+...+.+. ++ ..++|+||+|.+.......++....
T Consensus 50 ~~~~~~------~-------~~-------~~~~~~~~~~~~~~~~---~~-----~~~~Dii~~~~~~~~~~~~~~~~~~ 101 (355)
T cd03799 50 AELART------R-------YL-------ARSLALLAQALVLARE---LR-----RLGIDHIHAHFGTTPATVAMLASRL 101 (355)
T ss_pred ccccch------H-------HH-------HHHHHHHHHHHHHHHH---HH-----hcCCCEEEECCCCchHHHHHHHHHh
Confidence 000000 0 00 0011111111112222 11 2489999999865443333333322
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
.++|+++++|+...... .. ...++..++.+|.++++|+.
T Consensus 102 ------~~~~~~~~~~~~~~~~~-----------~~------------------------~~~~~~~~~~~~~vi~~s~~ 140 (355)
T cd03799 102 ------GGIPYSFTAHGKDIFRS-----------PD------------------------AIDLDEKLARADFVVAISEY 140 (355)
T ss_pred ------cCCCEEEEEeccccccc-----------Cc------------------------hHHHHHHHhhCCEEEECCHH
Confidence 46899999997531100 00 01345567889999999999
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
+++.+.... .....++.+||||+|.+.+.+... . ...+...|+
T Consensus 141 ~~~~l~~~~---------~~~~~~~~vi~~~~d~~~~~~~~~--------------------------~--~~~~~~~i~ 183 (355)
T cd03799 141 NRQQLIRLL---------GCDPDKIHVVHCGVDLERFPPRPP--------------------------P--PPGEPLRIL 183 (355)
T ss_pred HHHHHHHhc---------CCCcccEEEEeCCcCHHHcCCccc--------------------------c--ccCCCeEEE
Confidence 998886531 134678999999999887765420 0 013567899
Q ss_pred EEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHc--CCCEEEEccCC--hhhhhhhh
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATY--KDKYRGWVGFN--VPISHRIT 540 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~--~~~v~~~~Gy~--~~l~~~~~ 540 (542)
|+||+.+.||++.+++++..+.+ .+++|+++|.|+. .+.+++.++++ ++++ .+.|+. +++..++.
T Consensus 184 ~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v-~~~g~~~~~~l~~~~~ 254 (355)
T cd03799 184 SVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL--RDELEALIAELGLEDRV-TLLGAKSQEEVRELLR 254 (355)
T ss_pred EEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc--HHHHHHHHHHcCCCCeE-EECCcCChHHHHHHHH
Confidence 99999999999999999999876 3899999999874 56677777665 3444 588885 56766654
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.73 E-value=7.1e-16 Score=158.65 Aligned_cols=262 Identities=20% Similarity=0.220 Sum_probs=159.3
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++|+..|.|. .||.+.++.+|+++|+++||+|+++++....... .+
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~---~~--------------------------- 48 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESE---GP--------------------------- 48 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhcc---CC---------------------------
Confidence 799999988883 5999999999999999999999999976422100 00
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchh-HHHHHHHHh
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAG-LVPVLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~-~~~~~l~~~ 311 (542)
...+.+.....+.+.. +... + . .+ ....+..+ ..+||+||+|..... +....+...
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~~---~-~---~~----~~~~~~~~--------~~~pdii~~~~~~~~~~~~~~~~~~ 105 (364)
T cd03814 49 ARVVPVPSVPLPGYPE----IRLA---L-P---PR----RRVRRLLD--------AFAPDVVHIATPGPLGLAALRAARR 105 (364)
T ss_pred CCceeecccccCcccc----eEec---c-c---ch----hhHHHHHH--------hcCCCEEEEeccchhhHHHHHHHHH
Confidence 0111111111111100 0000 0 0 00 01111111 238999999965432 222222221
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.++|++.++|+.. +.. ..... ..+.. .....+.+..++.+|.++++|+
T Consensus 106 -------~~~~~i~~~~~~~-----~~~-~~~~~--~~~~~-----------------~~~~~~~~~~~~~~d~i~~~s~ 153 (364)
T cd03814 106 -------LGIPVVTSYHTDF-----PEY-LRYYG--LGPLS-----------------WLAWAYLRWFHNRADRVLVPSP 153 (364)
T ss_pred -------cCCCEEEEEecCh-----HHH-hhhcc--cchHh-----------------HhhHHHHHHHHHhCCEEEeCCH
Confidence 5799999999752 110 00000 00000 0002345667788999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
.+.+.+.. ....++.+++||+|.+.|.+... +...+++++ + .+.++|
T Consensus 154 ~~~~~~~~------------~~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~-~--~~~~~i 200 (364)
T cd03814 154 SLADELRA------------RGFRRVRLWPRGVDTELFHPRRR------------------DEALRARLG-P--PDRPVL 200 (364)
T ss_pred HHHHHHhc------------cCCCceeecCCCccccccCcccc------------------cHHHHHHhC-C--CCCeEE
Confidence 98875432 12467899999999988876532 122344554 2 366899
Q ss_pred EEEccCccccCHHHHHHHHHhhhc-CCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccC--Chhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILA-DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGF--NVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~-~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy--~~~l~~~~~A 541 (542)
+|+||+.+.||++.+++++..+.+ .+++|+|+|.|+. .+.++ ....++ .+.|+ .+++..++.+
T Consensus 201 ~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~--~~~~~----~~~~~v-~~~g~~~~~~~~~~~~~ 266 (364)
T cd03814 201 LYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA--RARLE----ARYPNV-HFLGFLDGEELAAAYAS 266 (364)
T ss_pred EEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch--HHHHh----ccCCcE-EEEeccCHHHHHHHHHh
Confidence 999999999999999999999876 3899999999874 34444 334566 47885 5667666654
No 47
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.72 E-value=7.9e-17 Score=173.89 Aligned_cols=298 Identities=18% Similarity=0.176 Sum_probs=165.5
Q ss_pred EEecccCCCcCCChHhHHHhHHHHHHHH-CCCeEEEEEecCCCCCc-ccch-------hhhhccc--CceeEEeecCCce
Q 009139 156 FVTAEAAPYSKTGGLGDVCGSLPVALAA-RGHRVMVVSPRYFNGTA-ADEN-------FTLAKDL--GCCMKICCFGGEQ 224 (542)
Q Consensus 156 ~Vt~e~~P~~~~GGl~~~v~~La~~L~~-~GheV~Vitp~~~~~~~-~~~~-------~~~~~~~--~~~~~v~~~g~~~ 224 (542)
-+++|.+. ++||+-+++..-|..+++ .|-+..+|.|....... .-+. +...++. ...++ .
T Consensus 6 E~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~-------v 76 (590)
T cd03793 6 EVAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIK-------V 76 (590)
T ss_pred EEeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCe-------E
Confidence 36777766 789999999999999886 69999999987542110 0000 1000100 01112 2
Q ss_pred eEEEEEeeeCCeE-EEEEcCCCCC-CCCCCCCCCCC--------CCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEE
Q 009139 225 EIAFFHEYREGVD-WVFVDHPSYH-RPGNPYGDING--------AFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIF 294 (542)
Q Consensus 225 ~~~~~~~~~~gv~-v~~i~~p~~~-~~~~~y~~~~~--------~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDII 294 (542)
.++-| .++|-+ ++.++..++. ..+.++...|. .+.+ .-.-.+|+.++...+..+... +...++||+
T Consensus 77 ~~GrW--~i~G~P~viL~D~~~~~~~~~~~~~~lW~~~~i~s~~~~~d-~nea~~fgy~~~~~i~~~~~~-~~~~~~dVi 152 (590)
T cd03793 77 HFGRW--LIEGYPKVVLFDIGSAAWKLDEWKGELWELCGIGSPEGDRE-TNDAIIFGFLVAWFLGEFAEQ-FDDEPAVVA 152 (590)
T ss_pred EEeEE--EcCCCCeEEEEeCchhhhhHHHHHHHHHHHcCCCCCCCCCc-chHHHHHHHHHHHHHHHHHhh-ccCCCCeEE
Confidence 22223 345554 4455543322 11112111110 0111 111224454443333222100 023579999
Q ss_pred EECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHH
Q 009139 295 LVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVN 374 (542)
Q Consensus 295 H~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (542)
|+|+|++++.+.+++... .++|+|+|+|.+.. |+.-. -|. ...+..+.. +...+.+..........
T Consensus 153 H~HeWm~g~a~~~lK~~~------~~VptVfTtHAT~~-GR~l~-----~g~-~~~y~~l~~-~~~d~eA~~~~I~~r~~ 218 (590)
T cd03793 153 HFHEWQAGVGLPLLRKRK------VDVSTIFTTHATLL-GRYLC-----AGN-VDFYNNLDY-FDVDKEAGKRGIYHRYC 218 (590)
T ss_pred EEcchhHhHHHHHHHHhC------CCCCEEEEeccccc-ccccc-----cCC-cccchhhhh-cchhhhhhcccchHHHH
Confidence 999999998888777432 57999999998742 32100 000 011111100 00001111222344566
Q ss_pred HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHH
Q 009139 375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKI 454 (542)
Q Consensus 375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~ 454 (542)
+|+.+...||++|+||+.+++++.. +++.++++ |||||+|++.|.+..+..-........ -....+.
T Consensus 219 iE~~aa~~Ad~fttVS~it~~E~~~---------Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~k--i~~f~~~ 285 (590)
T cd03793 219 IERAAAHCAHVFTTVSEITAYEAEH---------LLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEK--INEFVRG 285 (590)
T ss_pred HHHHHHhhCCEEEECChHHHHHHHH---------HhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhh--hhHHHHH
Confidence 8999999999999999999999864 34456666 899999999997653210000000000 0011233
Q ss_pred HHHHHhCCCCCCCCCEEEE-EccCcc-ccCHHHHHHHHHhhhc
Q 009139 455 ALQKELGLPIRPDCPLIGF-IGRLDY-QKGIDLIRLAAPEILA 495 (542)
Q Consensus 455 ~lr~~lGl~~~~~~~vIlf-VGRl~~-~KGid~LieA~~~L~~ 495 (542)
.++.+++++ +++++++| +||+++ +||+|.||+|+++|-.
T Consensus 286 ~~~~~~~~~--~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~ 326 (590)
T cd03793 286 HFYGHYDFD--LDKTLYFFTAGRYEFSNKGADMFLEALARLNY 326 (590)
T ss_pred HHhhhcCCC--CCCeEEEEEeeccccccCCHHHHHHHHHHHHH
Confidence 456667774 47788888 799999 9999999999999853
No 48
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.72 E-value=4.4e-16 Score=166.14 Aligned_cols=263 Identities=13% Similarity=0.085 Sum_probs=140.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||++|...+ ..||+|+.+.+|++.|.++||+|.++..+...... . .
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~------~-----------------------~ 47 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKE------S-----------------------V 47 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccc------c-----------------------c
Confidence 8999998643 57999999999999999999999999875322110 0 0
Q ss_pred eeCCeE-EEEEcCCCCCCC-CCCCCCCCCCCCChHHHHHHHHH-HHHHhccccCCCCCCCCCccEEEECCCchhHHHHH-
Q 009139 232 YREGVD-WVFVDHPSYHRP-GNPYGDINGAFGDNQFRYTLLCY-AACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVL- 307 (542)
Q Consensus 232 ~~~gv~-v~~i~~p~~~~~-~~~y~~~~~~~~~~~~r~~~~~~-a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~- 307 (542)
..++++ ++.+. +.+... ..... +-+ + +..+.+. +..+.+.. ..+|||||+|..+.+++...
T Consensus 48 ~~~~~~~~~~~~-~~~~~~~~~~~~---~~~-~---~~~~~~~~~~~~~i~~-------~~~pDviHlH~~~~~~~~~~~ 112 (405)
T PRK10125 48 SHQNYPQVIKHT-PRMTAMANIALF---RLF-N---RDLFGNFNELYRTITR-------TPGPVVLHFHVLHSYWLNLKS 112 (405)
T ss_pred ccCCcceEEEec-ccHHHHHHHHHH---Hhc-c---hhhcchHHHHHHHHhh-------ccCCCEEEEecccCceecHHH
Confidence 001111 11111 110000 00000 000 0 0001111 11122211 24899999998876433221
Q ss_pred -HHH----hcCCCCCCCCCcEEEEecCCC-cCCCCchhhhhhcCCChhhhccccccccccc-c-ccccc-----chhHHH
Q 009139 308 -LAS----KYRPHGVYKDARSILVIHNLS-HQGVEPAATYKNLGLPSEWYGALEWVFPTWA-R-THALD-----TGEAVN 374 (542)
Q Consensus 308 -l~~----~~~~~~~~~~ipvV~TiH~~~-~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~-~-~~~~~-----~~~~~~ 374 (542)
+.. ..+ ..++|+|+|+|+.. +.|.|.... +. ..|.... ..+|+-. . ....+ +.....
T Consensus 113 l~~~~~~~~~~----~~~~piV~TlHd~~~~tg~c~~~~----~C-~~~~~~c-~~Cp~l~~~~~~~~d~~~~~~~~k~~ 182 (405)
T PRK10125 113 VVRFCEKVKNH----KPDVTLVWTLHDHWSVTGRCAFTD----GC-EGWKTGC-QKCPTLNNYPPVKVDRAHQLVAGKRQ 182 (405)
T ss_pred HHHHHhhhhcc----cCCCCEEEecccccccCCCcCCCc----cc-ccccccC-CCCCCccCCCCCccchHHHHHHHHHH
Confidence 110 011 25789999999984 444443210 00 0111000 0010000 0 00001 011112
Q ss_pred HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHH
Q 009139 375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKI 454 (542)
Q Consensus 375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~ 454 (542)
..+...+.++.++++|+.+++.+... + ...++.+||||||++.+.+..+. .
T Consensus 183 ~~~~~~~~~~~iV~~S~~l~~~~~~~---------~--~~~~i~vI~NGid~~~~~~~~~~------------------~ 233 (405)
T PRK10125 183 LFREMLALGCQFISPSQHVADAFNSL---------Y--GPGRCRIINNGIDMATEAILAEL------------------P 233 (405)
T ss_pred HHHHHhhcCcEEEEcCHHHHHHHHHH---------c--CCCCEEEeCCCcCcccccccccc------------------c
Confidence 22333445688999999999876531 1 24789999999997544332110 0
Q ss_pred HHHHHhCCCCCCCCCEEEEEccC--ccccCHHHHHHHHHhhhcCCcEEEEEecCch
Q 009139 455 ALQKELGLPIRPDCPLIGFIGRL--DYQKGIDLIRLAAPEILADDIQFVMLGSGDP 508 (542)
Q Consensus 455 ~lr~~lGl~~~~~~~vIlfVGRl--~~~KGid~LieA~~~L~~~dv~LVIvG~G~~ 508 (542)
..+ ..+++++|+++||. .+.||++.|++|++.+. .+++|+|+|+|++
T Consensus 234 ~~~------~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~ 282 (405)
T PRK10125 234 PVR------ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSP 282 (405)
T ss_pred ccc------cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCc
Confidence 000 01367899999994 36899999999999874 4799999999863
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.72 E-value=9.1e-16 Score=157.28 Aligned_cols=259 Identities=19% Similarity=0.153 Sum_probs=152.7
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||+++++.++|. ..||.+.++.+|+++|+++||+|+|+++....... .+.
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~-------------------------- 50 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQ---DKE-------------------------- 50 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCc---ccc--------------------------
Confidence 699999988875 37999999999999999999999999976432110 000
Q ss_pred eCCeEEEEEcC-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHh
Q 009139 233 REGVDWVFVDH-PSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~-p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~ 311 (542)
........... ...... ..... +.........+.....+.++ ..+||+||+|.+.......+....
T Consensus 51 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~dii~~~~~~~~~~~~~~~~~ 117 (359)
T cd03823 51 VIGVVVYGRPIDEVLRSA--LPRDL---FHLSDYDNPAVVAEFARLLE--------DFRPDVVHFHHLQGLGVSILRAAR 117 (359)
T ss_pred cccceeeccccccccCCC--chhhh---hHHHhccCHHHHHHHHHHHH--------HcCCCEEEECCccchHHHHHHHHH
Confidence 00111110000 000000 00000 00000000011112222221 248999999986432222222211
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
. .++|+|+++|+.... .+. ..+. ....|.++++|+
T Consensus 118 ~------~~~~~i~~~hd~~~~--~~~---------~~~~----------------------------~~~~d~ii~~s~ 152 (359)
T cd03823 118 D------RGIPIVLTLHDYWLI--CPR---------QGLF----------------------------KKGGDAVIAPSR 152 (359)
T ss_pred h------cCCCEEEEEeeeeee--cch---------hhhh----------------------------ccCCCEEEEeCH
Confidence 1 469999999986211 000 0000 112399999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
.+.+.+.... ..+.++.+|+||+|...+.+... +. ..++++|
T Consensus 153 ~~~~~~~~~~----------~~~~~~~vi~n~~~~~~~~~~~~--------------------------~~--~~~~~~i 194 (359)
T cd03823 153 FLLDRYVANG----------LFAEKISVIRNGIDLDRAKRPRR--------------------------AP--PGGRLRF 194 (359)
T ss_pred HHHHHHHHcC----------CCccceEEecCCcChhhcccccc--------------------------CC--CCCceEE
Confidence 9988776421 12468999999999887755321 11 1366889
Q ss_pred EEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCC--hhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFN--VPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~--~~l~~~~~A 541 (542)
+|+||+.+.||++.+++|++.+.+.+++|+++|.++.... .+... ....++ .+.|+- +++..++.+
T Consensus 195 ~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~--~~~~~-~~~~~v-~~~g~~~~~~~~~~~~~ 262 (359)
T cd03823 195 GFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEE--ESYEL-EGDPRV-EFLGAYPQEEIDDFYAE 262 (359)
T ss_pred EEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhH--HHHhh-cCCCeE-EEeCCCCHHHHHHHHHh
Confidence 9999999999999999999998766899999999875322 22221 233445 578885 677766643
No 50
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.71 E-value=9e-16 Score=158.16 Aligned_cols=267 Identities=15% Similarity=0.119 Sum_probs=162.7
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++..+.|. ..||+++++.+|+++|+++||+|+++++........ .. .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-~~---------------------------~ 51 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLL-LP---------------------------L 51 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCcccccc-cc---------------------------c
Confidence 688988877774 479999999999999999999999999764322100 00 0
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
...... ....... .. ...+............ ..+|||||+|.+..... .
T Consensus 52 ~~~~~~--~~~~~~~-----~~---------~~~~~~~~~~~~~~~~--------~~~~Dii~~~~~~~~~~------~- 100 (365)
T cd03809 52 RAALRL--LLRLPRR-----LL---------WGLLFLLRAGDRLLLL--------LLGLDLLHSPHNTAPLL------R- 100 (365)
T ss_pred hhcccc--ccccccc-----cc---------cchhhHHHHHHHHHhh--------hcCCCeeeecccccCcc------c-
Confidence 000000 0000000 00 0000001111111111 24899999998655333 1
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
..++|+|+++|+...... +. . ...... .....+++..++.+|.++++|+.
T Consensus 101 -----~~~~~~i~~~hd~~~~~~-~~-----~-~~~~~~------------------~~~~~~~~~~~~~~d~~i~~s~~ 150 (365)
T cd03809 101 -----LRGVPVVVTIHDLIPLRF-PE-----Y-FSPGFR------------------RYFRRLLRRALRRADAIITVSEA 150 (365)
T ss_pred -----CCCCCEEEEeccchhhhC-cc-----c-CCHHHH------------------HHHHHHHHHHHHHcCEEEEccHH
Confidence 158999999998732110 00 0 000000 01123566778899999999999
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
+++.+.... ..+..++.+|+||+|...+.+... .. +...... .+.++|+
T Consensus 151 ~~~~~~~~~---------~~~~~~~~vi~~~~~~~~~~~~~~-------------------~~-~~~~~~~--~~~~~i~ 199 (365)
T cd03809 151 TKRDLLRYL---------GVPPDKIVVIPLGVDPRFRPPPAE-------------------AE-VLRALYL--LPRPYFL 199 (365)
T ss_pred HHHHHHHHh---------CcCHHHEEeeccccCccccCCCch-------------------HH-HHHHhcC--CCCCeEE
Confidence 998886532 124678999999999887765421 11 2233332 3678999
Q ss_pred EEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHH-HcCCCEEEEccCC--hhhhhhhhc
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEA-TYKDKYRGWVGFN--VPISHRITA 541 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~-~~~~~v~~~~Gy~--~~l~~~~~A 541 (542)
|+||+.+.||++.+++++..+.+. +++|+++|.+........+.+.+ ...+++ .+.|+. +++..++.+
T Consensus 200 ~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~ 272 (365)
T cd03809 200 YVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRV-RFLGYVSDEELAALYRG 272 (365)
T ss_pred EeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeE-EECCCCChhHHHHHHhh
Confidence 999999999999999999999864 59999999876533333333222 234444 588885 666666543
No 51
>PLN02275 transferase, transferring glycosyl groups
Probab=99.71 E-value=2.7e-15 Score=158.28 Aligned_cols=265 Identities=14% Similarity=0.006 Sum_probs=155.1
Q ss_pred CChHhHHHhHHHHHHHHCCC-eEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEeeeCCeEEEEEcCCC
Q 009139 167 TGGLGDVCGSLPVALAARGH-RVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS 245 (542)
Q Consensus 167 ~GGl~~~v~~La~~L~~~Gh-eV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~ 245 (542)
-+|.+..+..++..|+++|| +|+|+|...... +.+ ....+|+++++++.+.
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~------~~~----------------------~~~~~~v~v~r~~~~~ 65 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEP------IPA----------------------LLNHPSIHIHLMVQPR 65 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCC------CHH----------------------HhcCCcEEEEECCCcc
Confidence 37888899999999999886 899998643211 000 0123568888875322
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHH-HHHHHHhccccCCCCCCCCCccEEEECCCchh---HHHHHHHHhcCCCCCCCCC
Q 009139 246 YHRPGNPYGDINGAFGDNQFRYTLL-CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAG---LVPVLLASKYRPHGVYKDA 321 (542)
Q Consensus 246 ~~~~~~~y~~~~~~~~~~~~r~~~~-~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~---~~~~~l~~~~~~~~~~~~i 321 (542)
.... ... + -..+.+..+ ........+.+. .+..+|||||+|+.+.. +++.+++.. .++
T Consensus 66 ~~~~---~~~----~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~DvV~~~~~~~~~~~~~~~~~~~~-------~~~ 127 (371)
T PLN02275 66 LLQR---LPR----V-LYALALLLKVAIQFLMLLWFLC---VKIPRPDVFLVQNPPSVPTLAVVKLACWL-------RRA 127 (371)
T ss_pred cccc---ccc----c-hHHHHHHHHHHHHHHHHHHHHH---hhCCCCCEEEEeCCCCcHHHHHHHHHHHH-------hCC
Confidence 1110 000 0 010001111 001111111110 01248999999975532 222233322 478
Q ss_pred cEEEEecCCCcCCCCchhhhhhcCCCh-hhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChhhHHHHHhh
Q 009139 322 RSILVIHNLSHQGVEPAATYKNLGLPS-EWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTV 400 (542)
Q Consensus 322 pvV~TiH~~~~~g~~~~~~~~~lgl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~ 400 (542)
|+|+|+|+..+. ....+... .+.. .....+++..++.+|.|+++|+.+++.+.+.
T Consensus 128 p~v~~~h~~~~~-------~~~~~~~~~~~~~-----------------~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~ 183 (371)
T PLN02275 128 KFVIDWHNFGYT-------LLALSLGRSHPLV-----------------RLYRWYERHYGKMADGHLCVTKAMQHELDQN 183 (371)
T ss_pred CEEEEcCCccHH-------HHhcccCCCCHHH-----------------HHHHHHHHHHHhhCCEEEECCHHHHHHHHHh
Confidence 999999986210 00111100 0000 0112356778889999999999999887642
Q ss_pred ccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccc
Q 009139 401 EGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQ 480 (542)
Q Consensus 401 ~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~ 480 (542)
. | . ++.+||||+ .+.|.|.... . .+. .++..+|+++||+.++
T Consensus 184 ~---g------~---~i~vi~n~~-~~~f~~~~~~----------------------~--~~~-~~~~~~i~~~grl~~~ 225 (371)
T PLN02275 184 W---G------I---RATVLYDQP-PEFFRPASLE----------------------I--RLR-PNRPALVVSSTSWTPD 225 (371)
T ss_pred c---C------C---CeEEECCCC-HHHcCcCCch----------------------h--ccc-CCCcEEEEEeCceecc
Confidence 1 1 1 278999995 4667664210 0 011 1234578899999999
Q ss_pred cCHHHHHHHHHhhh-------------------cCCcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccC--Chhhhhh
Q 009139 481 KGIDLIRLAAPEIL-------------------ADDIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGF--NVPISHR 538 (542)
Q Consensus 481 KGid~LieA~~~L~-------------------~~dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy--~~~l~~~ 538 (542)
||++.|++|+..+. .++++|+|+|+|+. .+++++++++++ .++.++.|| .+++..+
T Consensus 226 k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~--~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~ 303 (371)
T PLN02275 226 EDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ--KAMYEEKISRLNLRHVAFRTMWLEAEDYPLL 303 (371)
T ss_pred CCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC--HHHHHHHHHHcCCCceEEEcCCCCHHHHHHH
Confidence 99999999998873 14799999999984 678888888764 346555565 5777777
Q ss_pred hhc
Q 009139 539 ITA 541 (542)
Q Consensus 539 ~~A 541 (542)
+.+
T Consensus 304 l~~ 306 (371)
T PLN02275 304 LGS 306 (371)
T ss_pred HHh
Confidence 654
No 52
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.69 E-value=4.9e-15 Score=150.23 Aligned_cols=248 Identities=18% Similarity=0.135 Sum_probs=157.6
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++..+.| .||.++++..|+++|+++||+|+++++..... ..+ ..
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~----~~~-------------------------~~ 48 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGEP----PFY-------------------------EL 48 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCCC----Ccc-------------------------cc
Confidence 68999987665 59999999999999999999999999764320 000 01
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
.+++.+..++...... ... .......+.+. + ...+||+||+|.+.. . .++....
T Consensus 49 ~~~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~---l-----~~~~~d~i~~~~~~~--~-~~~~~~~ 102 (348)
T cd03820 49 DPKIKVIDLGDKRDSK---LLA------------RFKKLRRLRKL---L-----KNNKPDVVISFLTSL--L-TFLASLG 102 (348)
T ss_pred CCccceeecccccccc---hhc------------cccchHHHHHh---h-----cccCCCEEEEcCchH--H-HHHHHHh
Confidence 1233333332111000 000 00001112222 2 124899999998761 1 1222211
Q ss_pred CCCCCCCC-CcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 313 RPHGVYKD-ARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 313 ~~~~~~~~-ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.+ +|+|.+.|+...... ... ......+..++.+|.++++|+
T Consensus 103 ------~~~~~~i~~~~~~~~~~~------------~~~--------------------~~~~~~~~~~~~~d~ii~~s~ 144 (348)
T cd03820 103 ------LKIVKLIVSEHNSPDAYK------------KRL--------------------RRLLLRRLLYRRADAVVVLTE 144 (348)
T ss_pred ------hccccEEEecCCCccchh------------hhh--------------------HHHHHHHHHHhcCCEEEEeCH
Confidence 23 499999997621100 000 001135667889999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
..+.... .....++.+||||+|...+.+. . ..+.+++
T Consensus 145 ~~~~~~~------------~~~~~~~~vi~~~~~~~~~~~~-----------------------------~--~~~~~~i 181 (348)
T cd03820 145 EDRALYY------------KKFNKNVVVIPNPLPFPPEEPS-----------------------------S--DLKSKRI 181 (348)
T ss_pred HHHHHhh------------ccCCCCeEEecCCcChhhcccc-----------------------------C--CCCCcEE
Confidence 8862111 1246789999999998765432 0 1366899
Q ss_pred EEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccCChhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy~~~l~~~~~A 541 (542)
+|+||+.+.||++.+++|++.+.+ .+++|+|+|+|+. .+.+++++++++ ...+.+.|+.+++..++.+
T Consensus 182 ~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 252 (348)
T cd03820 182 LAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPE--REALEALIKELGLEDRVILLGFTKNIEEYYAK 252 (348)
T ss_pred EEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCC--HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh
Confidence 999999999999999999999874 4899999999874 556666666654 2344688998888877654
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.69 E-value=1.6e-14 Score=146.88 Aligned_cols=268 Identities=26% Similarity=0.352 Sum_probs=166.2
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++..++|. .||.+.++..|+++|.+.||+|.++++........ ..
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~-----------------------------~~ 49 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDE-----------------------------EE 49 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCce-----------------------------ee
Confidence 699999988774 69999999999999999999999999764321100 00
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
......... .... .... ......+........ ...+||+||+|.+...........
T Consensus 50 ~~~~~~~~~--~~~~---~~~~---------~~~~~~~~~~~~~~~--------~~~~~Dii~~~~~~~~~~~~~~~~-- 105 (374)
T cd03801 50 VGGIVVVRP--PPLL---RVRR---------LLLLLLLALRLRRLL--------RRERFDVVHAHDWLALLAAALAAR-- 105 (374)
T ss_pred ecCcceecC--Cccc---ccch---------hHHHHHHHHHHHHHh--------hhcCCcEEEEechhHHHHHHHHHH--
Confidence 000000000 0000 0000 001111111222221 124899999998776554432222
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
..++|+|+++|+......... .... ........+..+..+|.++++|+.
T Consensus 106 -----~~~~~~i~~~h~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~d~~i~~s~~ 154 (374)
T cd03801 106 -----LLGIPLVLTVHGLEFGRPGNE---------LGLL-----------------LKLARALERRALRRADRIIAVSEA 154 (374)
T ss_pred -----hcCCcEEEEeccchhhccccc---------hhHH-----------------HHHHHHHHHHHHHhCCEEEEecHH
Confidence 158999999998742111000 0000 001123456677889999999999
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
+.+.+..... ....++.++|||+|...+.+.. ...+...... .+.++|+
T Consensus 155 ~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~~~i~ 203 (374)
T cd03801 155 TREELRELGG---------VPPEKITVIPNGVDTERFRPAP--------------------RAARRRLGIP--EDEPVIL 203 (374)
T ss_pred HHHHHHhcCC---------CCCCcEEEecCcccccccCccc--------------------hHHHhhcCCc--CCCeEEE
Confidence 9888765311 1236899999999988776531 1122223222 3668999
Q ss_pred EEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHHHc--CCCEEEEccCC--hhhhhhhh
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEATY--KDKYRGWVGFN--VPISHRIT 540 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~~~--~~~v~~~~Gy~--~~l~~~~~ 540 (542)
|+||+.+.||++.+++|+..+.+. +++|+++|.++ ....++++++++ .+++ .+.|+. +++..++.
T Consensus 204 ~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~ 274 (374)
T cd03801 204 FVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP--LREELEALAAELGLGDRV-TFLGFVPDEDLPALYA 274 (374)
T ss_pred EecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--HHHHHHHHHHHhCCCcce-EEEeccChhhHHHHHH
Confidence 999999999999999999998763 79999999776 356666665443 3455 577885 77776664
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.68 E-value=1.3e-14 Score=147.83 Aligned_cols=260 Identities=18% Similarity=0.160 Sum_probs=162.0
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++.. .||.+.++..|+++|.++||+|+++++...... ...
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~------------------------------~~~ 44 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE------------------------------ELE 44 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc------------------------------ccc
Confidence 68999864 499999999999999999999999997632210 001
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
..+++++.++.... . .. ..+.......+.+.++ ..+||+||+|.+...++..+.....
T Consensus 45 ~~~~~~~~~~~~~~--~--~~----------~~~~~~~~~~~~~~~~--------~~~~dvv~~~~~~~~~~~~~~~~~~ 102 (359)
T cd03808 45 ALGVKVIPIPLDRR--G--IN----------PFKDLKALLRLYRLLR--------KERPDIVHTHTPKPGILGRLAARLA 102 (359)
T ss_pred cCCceEEecccccc--c--cC----------hHhHHHHHHHHHHHHH--------hcCCCEEEEccccchhHHHHHHHHc
Confidence 24555555432210 0 00 0010011111222221 2489999999876665555544322
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
...++++++|+..+.... ..+.. .....+++..+..+|.++++|+.
T Consensus 103 ------~~~~~i~~~~~~~~~~~~-----------~~~~~-----------------~~~~~~~~~~~~~~d~ii~~s~~ 148 (359)
T cd03808 103 ------GVPKVIYTVHGLGFVFTS-----------GGLKR-----------------RLYLLLERLALRFTDKVIFQNED 148 (359)
T ss_pred ------CCCCEEEEecCcchhhcc-----------chhHH-----------------HHHHHHHHHHHhhccEEEEcCHH
Confidence 457888888876321100 00000 00123456677889999999999
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
..+.+..... .....++.+++||+|.+.+.+.... . .++.++|+
T Consensus 149 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~--~~~~~~i~ 192 (359)
T cd03808 149 DRDLALKLGI--------IKKKKTVLIPGSGVDLDRFSPSPEP--------------------------I--PEDDPVFL 192 (359)
T ss_pred HHHHHHHhcC--------CCcCceEEecCCCCChhhcCccccc--------------------------c--CCCCcEEE
Confidence 9888765311 0114577888999998877654210 0 13678999
Q ss_pred EEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHc-CCCEEEEccCChhhhhhhhc
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATY-KDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~-~~~v~~~~Gy~~~l~~~~~A 541 (542)
|+||+.++||++.+++++..+.+ .+++|+|+|.++........ +..+. ....+.+.|+.+++..++.+
T Consensus 193 ~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (359)
T cd03808 193 FVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL-EIEKLGLEGRVEFLGFRDDVPELLAA 263 (359)
T ss_pred EEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH-HHHhcCCcceEEEeeccccHHHHHHh
Confidence 99999999999999999999874 48999999998753222211 12222 22334688998888877654
No 55
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.67 E-value=4.5e-15 Score=155.27 Aligned_cols=251 Identities=16% Similarity=0.014 Sum_probs=154.1
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEE
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFH 230 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 230 (542)
+|||++++.+ .||.+..+.+|+++|.++||+|++++....... . .
T Consensus 1 ~~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~---~--------------------------~ 45 (357)
T PRK00726 1 MKKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEA---R--------------------------L 45 (357)
T ss_pred CcEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhh---h--------------------------c
Confidence 4899998753 589999999999999999999999986431100 0 0
Q ss_pred eeeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHH
Q 009139 231 EYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLAS 310 (542)
Q Consensus 231 ~~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~ 310 (542)
....|++++.++.+...... .. ........+.....++.+.++ ..+|||||+|.+..++.+.+++.
T Consensus 46 ~~~~g~~~~~~~~~~~~~~~-~~--------~~l~~~~~~~~~~~~~~~~ik-----~~~pDvv~~~~~~~~~~~~~~~~ 111 (357)
T PRK00726 46 VPKAGIEFHFIPSGGLRRKG-SL--------ANLKAPFKLLKGVLQARKILK-----RFKPDVVVGFGGYVSGPGGLAAR 111 (357)
T ss_pred cccCCCcEEEEeccCcCCCC-hH--------HHHHHHHHHHHHHHHHHHHHH-----hcCCCEEEECCCcchhHHHHHHH
Confidence 01146777777543221100 00 000111111122222222222 34899999999776665554443
Q ss_pred hcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecC
Q 009139 311 KYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390 (542)
Q Consensus 311 ~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS 390 (542)
. .++|+|++.|+.. +. . ..+..++.+|.+++++
T Consensus 112 ~-------~~~p~v~~~~~~~-----~~-----------~------------------------~~r~~~~~~d~ii~~~ 144 (357)
T PRK00726 112 L-------LGIPLVIHEQNAV-----PG-----------L------------------------ANKLLARFAKKVATAF 144 (357)
T ss_pred H-------cCCCEEEEcCCCC-----cc-----------H------------------------HHHHHHHHhchheECc
Confidence 2 5789998877531 10 0 1122345789999888
Q ss_pred hhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCE
Q 009139 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPL 470 (542)
Q Consensus 391 ~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~v 470 (542)
+....+ .+..++.+|+||+|.+.+.+.. .+++++++ ++.++
T Consensus 145 ~~~~~~---------------~~~~~i~vi~n~v~~~~~~~~~----------------------~~~~~~~~--~~~~~ 185 (357)
T PRK00726 145 PGAFPE---------------FFKPKAVVTGNPVREEILALAA----------------------PPARLAGR--EGKPT 185 (357)
T ss_pred hhhhhc---------------cCCCCEEEECCCCChHhhcccc----------------------hhhhccCC--CCCeE
Confidence 743111 2468999999999987654321 12345553 36788
Q ss_pred EEEEccCccccCHHHHH-HHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 471 IGFIGRLDYQKGIDLIR-LAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 471 IlfVGRl~~~KGid~Li-eA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
|+++|+....|++..++ +|++++.+....++++|+|+. +.+++..+ ++.+ +.+.||.+++.+++.+
T Consensus 186 i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---~~~~~~~~-~~~~-v~~~g~~~~~~~~~~~ 252 (357)
T PRK00726 186 LLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL---EEVRAAYA-AGIN-AEVVPFIDDMAAAYAA 252 (357)
T ss_pred EEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH---HHHHHHhh-cCCc-EEEeehHhhHHHHHHh
Confidence 99999999999876555 999887543355778899873 34444334 5545 4688998888887765
No 56
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.66 E-value=3.1e-15 Score=160.36 Aligned_cols=128 Identities=16% Similarity=0.042 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHH
Q 009139 374 NVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCK 453 (542)
Q Consensus 374 ~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k 453 (542)
.+++..++.||.|+++|+..++.+.+.. ....++.+|+||+|++.|.+....
T Consensus 181 ~~~~~~~~~aD~ii~~S~~~~~~~~~~~----------~~~~~~~vi~~gvd~~~~~~~~~~------------------ 232 (419)
T cd03806 181 FLYGLAGSFADVVMVNSTWTRNHIRSLW----------KRNTKPSIVYPPCDVEELLKLPLD------------------ 232 (419)
T ss_pred HHHHHHhhcCCEEEECCHHHHHHHHHHh----------CcCCCcEEEcCCCCHHHhcccccc------------------
Confidence 3677788999999999999988876421 112489999999998877543210
Q ss_pred HHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC-------CcEEEEEecCch----hhHHHHHHHHHHcC
Q 009139 454 IALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD-------DIQFVMLGSGDP----QFESWMRDTEATYK 522 (542)
Q Consensus 454 ~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~-------dv~LVIvG~G~~----~~~~~l~~la~~~~ 522 (542)
...+.++|+|+||+.++||++.+++|++.+.+. +++|+|+|+|.. .+.++++++++++.
T Consensus 233 ----------~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~ 302 (419)
T cd03806 233 ----------EKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELG 302 (419)
T ss_pred ----------cccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhC
Confidence 013568999999999999999999999998752 599999998732 36678888888764
Q ss_pred --CCEEEEccC--Chhhhhhhh
Q 009139 523 --DKYRGWVGF--NVPISHRIT 540 (542)
Q Consensus 523 --~~v~~~~Gy--~~~l~~~~~ 540 (542)
++| .|+|+ .+++..++.
T Consensus 303 l~~~V-~f~g~v~~~~l~~~l~ 323 (419)
T cd03806 303 LEDKV-EFVVNAPFEELLEELS 323 (419)
T ss_pred CCCeE-EEecCCCHHHHHHHHH
Confidence 455 68887 466666654
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.66 E-value=1.4e-14 Score=146.83 Aligned_cols=258 Identities=21% Similarity=0.246 Sum_probs=160.5
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++..+. .||.+.++..|+++|.+.||+|.+++......... .. ...
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~---~~-----------------------~~~ 50 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLE---LL-----------------------PSN 50 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccc---cc-----------------------ccc
Confidence 6899987643 59999999999999999999999999764321100 00 000
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCC-chhHHHHHHHHh
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDW-HAGLVPVLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~-~~~~~~~~l~~~ 311 (542)
............ ... .. .......+.++ ..+||+||+|.. ...++..+.. .
T Consensus 51 ~~~~~~~~~~~~-------~~~---------~~---~~~~~~~~~~~--------~~~~dii~~~~~~~~~~~~~~~~-~ 102 (353)
T cd03811 51 VKLIPVRVLKLK-------SLR---------DL---LAILRLRRLLR--------KEKPDVVISHLTTTPNVLALLAA-R 102 (353)
T ss_pred hhhhceeeeecc-------ccc---------ch---hHHHHHHHHHH--------hcCCCEEEEcCccchhHHHHHHh-h
Confidence 000000000000 000 00 01112222221 237999999987 3333332222 1
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.++|+|+++|+........ .. .....++..+..+|.++++|+
T Consensus 103 -------~~~~~i~~~~~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~d~ii~~s~ 144 (353)
T cd03811 103 -------LGTKLIVWEHNSLSLELKR------------KL-------------------RLLLLIRKLYRRADKIVAVSE 144 (353)
T ss_pred -------cCCceEEEEcCcchhhhcc------------ch-------------------hHHHHHHhhccccceEEEecc
Confidence 2689999999873211000 00 000234556788999999999
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
.+++.+..... .+..++.+||||+|.+.+.+.... .. .++.. .+.++|
T Consensus 145 ~~~~~~~~~~~---------~~~~~~~vi~~~~~~~~~~~~~~~------------------~~---~~~~~--~~~~~i 192 (353)
T cd03811 145 GVKEDLLKLLG---------IPPDKIEVIYNPIDIEEIRALAEE------------------PL---ELGIP--PDGPVI 192 (353)
T ss_pred chhhhHHHhhc---------CCccccEEecCCcChhhcCcccch------------------hh---hcCCC--CCceEE
Confidence 99888765311 235789999999998877654221 00 22332 467899
Q ss_pred EEEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccCChhhhhhhh
Q 009139 472 GFIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGFNVPISHRIT 540 (542)
Q Consensus 472 lfVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy~~~l~~~~~ 540 (542)
+|+||+.+.||++.+++|+..+.+. +++|+++|.|+. .+.+++++++++ ...+.+.|+.+++..++.
T Consensus 193 ~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 262 (353)
T cd03811 193 LAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPL--REELEALAKELGLADRVHFLGFQSNPYPYLK 262 (353)
T ss_pred EEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCcc--HHHHHHHHHhcCCCccEEEecccCCHHHHHH
Confidence 9999999999999999999999763 899999999874 556666666653 223468898887776654
No 58
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.66 E-value=1.4e-14 Score=149.42 Aligned_cols=255 Identities=20% Similarity=0.233 Sum_probs=148.5
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++|++ +.|. .||+++++.+|+++|++.||+|++++......... . . . .
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----~--------------~--------~-~ 50 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLL----Y--------------G--------G-E 50 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCccc----C--------------C--------C-c
Confidence 7999986 4563 69999999999999999999999998654221100 0 0 0 0
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHH---HHH
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPV---LLA 309 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~---~l~ 309 (542)
......... +. ...+. ...+.++ ..+||+||+|.|...+.+. .+.
T Consensus 51 ~~~~~~~~~-----------~~---------~~~~~----~~~~~~~--------~~~~dii~~~~~~~~~~~~~~~~~~ 98 (366)
T cd03822 51 QEVVRVIVL-----------DN---------PLDYR----RAARAIR--------LSGPDVVVIQHEYGIFGGEAGLYLL 98 (366)
T ss_pred ccceeeeec-----------CC---------chhHH----HHHHHHh--------hcCCCEEEEeeccccccchhhHHHH
Confidence 000000000 00 00110 1111211 2389999998854322221 111
Q ss_pred HhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeec
Q 009139 310 SKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTV 389 (542)
Q Consensus 310 ~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~v 389 (542)
.... ..++|+|+++|+.... . ...+ ...+++..++.+|.|+++
T Consensus 99 ~~~~----~~~~~~i~~~h~~~~~--~----------~~~~---------------------~~~~~~~~~~~~d~ii~~ 141 (366)
T cd03822 99 LLLR----GLGIPVVVTLHTVLLH--E----------PRPG---------------------DRALLRLLLRRADAVIVM 141 (366)
T ss_pred HHHh----hcCCCEEEEEecCCcc--c----------cchh---------------------hhHHHHHHHhcCCEEEEe
Confidence 1111 1579999999986110 0 0000 012345567889999999
Q ss_pred ChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCC
Q 009139 390 SKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCP 469 (542)
Q Consensus 390 S~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~ 469 (542)
|....+++... ....++.+|+||+|...+.+... . ++...+ .+.+
T Consensus 142 s~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~---------------------~-~~~~~~--~~~~ 186 (366)
T cd03822 142 SSELLRALLLR-----------AYPEKIAVIPHGVPDPPAEPPES---------------------L-KALGGL--DGRP 186 (366)
T ss_pred eHHHHHHHHhh-----------cCCCcEEEeCCCCcCcccCCchh---------------------h-HhhcCC--CCCe
Confidence 74443333211 11479999999999766543210 0 222222 3678
Q ss_pred EEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHH---HHHHH--cCCCEEEEccC--Chhhhhhhh
Q 009139 470 LIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMR---DTEAT--YKDKYRGWVGF--NVPISHRIT 540 (542)
Q Consensus 470 vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~---~la~~--~~~~v~~~~Gy--~~~l~~~~~ 540 (542)
+|+|+||+.++||++.+++|+..+.+ .+++|+|+|.+......... +++++ +.+++.+..+| .+++..++.
T Consensus 187 ~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~ 266 (366)
T cd03822 187 VLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFS 266 (366)
T ss_pred EEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHh
Confidence 99999999999999999999999876 48999999998643322211 11333 34566533343 556666654
Q ss_pred c
Q 009139 541 A 541 (542)
Q Consensus 541 A 541 (542)
+
T Consensus 267 ~ 267 (366)
T cd03822 267 A 267 (366)
T ss_pred h
Confidence 3
No 59
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.66 E-value=1.2e-14 Score=157.11 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=95.8
Q ss_pred hcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHH--
Q 009139 382 TADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKE-- 459 (542)
Q Consensus 382 ~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~-- 459 (542)
.+| ++++|..+++.+... +..+++|+.+||||||++.|.|..+. ....++.
T Consensus 339 ~sd-~v~~s~~v~~~l~~~---------lgip~~KI~VIyNGVD~~rf~p~~~~-----------------~~~~r~~~~ 391 (578)
T PRK15490 339 GVD-FMSNNHCVTRHYADW---------LKLEAKHFQVVYNGVLPPSTEPSSEV-----------------PHKIWQQFT 391 (578)
T ss_pred cch-hhhccHHHHHHHHHH---------hCCCHHHEEEEeCCcchhhcCccchh-----------------hHHHHHHhh
Confidence 345 677888777776542 22468899999999999988875321 1122332
Q ss_pred hCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCChhh
Q 009139 460 LGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFNVPI 535 (542)
Q Consensus 460 lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~~~l 535 (542)
.+++ ++.++|+++||+.++||++.+++|+.++.+ .+++|+|+|+|+ ..+++++++++++ ++| .|+|+.+++
T Consensus 392 ~~l~--~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~--~~eeLk~la~elgL~d~V-~FlG~~~Dv 466 (578)
T PRK15490 392 QKTQ--DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGD--LRAEAQKRAEQLGILERI-LFVGASRDV 466 (578)
T ss_pred hccC--CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCch--hHHHHHHHHHHcCCCCcE-EECCChhhH
Confidence 3343 356899999999999999999999998765 489999999997 4678888888765 455 699999888
Q ss_pred hhhhhc
Q 009139 536 SHRITA 541 (542)
Q Consensus 536 ~~~~~A 541 (542)
..++.+
T Consensus 467 ~~~Laa 472 (578)
T PRK15490 467 GYWLQK 472 (578)
T ss_pred HHHHHh
Confidence 887654
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.65 E-value=1e-14 Score=151.10 Aligned_cols=253 Identities=19% Similarity=0.181 Sum_probs=150.4
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||++++.. + ..||.++++..++++|.++||+|+|++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------------------------------- 41 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKK----------------------------------- 41 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecc-----------------------------------
Confidence 899999864 3 3599999999999999999999999985410
Q ss_pred eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHh
Q 009139 232 YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASK 311 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~ 311 (542)
. + .. . + ...+|||||+|.+....+.......
T Consensus 42 -----~---~-----------~~----------------------~---~-----~~~~~diih~~~~~~~~~~~~~~~~ 72 (365)
T cd03825 42 -----A---L-----------IS----------------------K---I-----EIINADIVHLHWIHGGFLSIEDLSK 72 (365)
T ss_pred -----h---h-----------hh----------------------C---h-----hcccCCEEEEEccccCccCHHHHHH
Confidence 0 0 00 0 0 0137899999986655444333322
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccch-hHHHHHHHHH-HhcCceeec
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTG-EAVNVLKGAI-VTADRLLTV 389 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~k~~l-~~ad~Vi~v 389 (542)
.. .++|+|+|+|+..... +...+ ......+...... .+.-......... ......+..+ ..++.++++
T Consensus 73 ~~-----~~~~~v~~~hd~~~~~--~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 142 (365)
T cd03825 73 LL-----DRKPVVWTLHDMWPFT--GGCHY--PGGCDRYKTECGN-CPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAP 142 (365)
T ss_pred HH-----cCCCEEEEcccCcccc--cccCC--ccccccccccCCC-CCCCCCCCcccHHHHHHHHHHHHhccCCcEEEeh
Confidence 20 3789999999863110 00000 0000000000000 0000000000000 0011111122 456788999
Q ss_pred ChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCC
Q 009139 390 SKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCP 469 (542)
Q Consensus 390 S~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~ 469 (542)
|+...+.+.... ..+..++.+||||+|.+.|.|.. +...++.++++ ++..
T Consensus 143 s~~~~~~~~~~~---------~~~~~~~~vi~ngi~~~~~~~~~-------------------~~~~~~~~~~~--~~~~ 192 (365)
T cd03825 143 SRWLADCARSSS---------LFKGIPIEVIPNGIDTTIFRPRD-------------------KREARKRLGLP--ADKK 192 (365)
T ss_pred hHHHHHHHHhcc---------ccCCCceEEeCCCCcccccCCCc-------------------HHHHHHHhCCC--CCCe
Confidence 988877665321 12457899999999998886642 34567777875 3667
Q ss_pred EEEEEccCcc--ccCHHHHHHHHHhhhc---CCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCCh---hhhhhhh
Q 009139 470 LIGFIGRLDY--QKGIDLIRLAAPEILA---DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNV---PISHRIT 540 (542)
Q Consensus 470 vIlfVGRl~~--~KGid~LieA~~~L~~---~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~---~l~~~~~ 540 (542)
++++.|+... .||++.+++|++.+.+ .+++++++|.++..... ....++ .+.|+.. ++..++.
T Consensus 193 ~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-------~~~~~v-~~~g~~~~~~~~~~~~~ 263 (365)
T cd03825 193 IILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-------DLPFPV-HYLGSLNDDESLALIYS 263 (365)
T ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-------cCCCce-EecCCcCCHHHHHHHHH
Confidence 8888888766 8999999999999875 58999999998742211 234455 5788844 3545443
No 61
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.64 E-value=1.3e-13 Score=140.96 Aligned_cols=270 Identities=22% Similarity=0.288 Sum_probs=162.1
Q ss_pred EEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEeee
Q 009139 154 IVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYR 233 (542)
Q Consensus 154 Il~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 233 (542)
|++++..++|. ..||.+.++..++++|.+.||+|+|+++........ .. .
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~--~~---------------------------~ 50 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLL--DL---------------------------L 50 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCch--hh---------------------------c
Confidence 57788766553 269999999999999999999999999764221100 00 0
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCch-hHHHHHHHHhc
Q 009139 234 EGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHA-GLVPVLLASKY 312 (542)
Q Consensus 234 ~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~-~~~~~~l~~~~ 312 (542)
............... ... ..........+...+...++. ...+||+||+|.... .++...+...
T Consensus 51 ~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~l~~------~~~~~dii~~~~~~~~~~~~~~~~~~- 115 (377)
T cd03798 51 KGRLVGVERLPVLLP---VVP-----LLKGPLLYLLAARALLKLLKL------KRFRPDLIHAHFAYPDGFAAALLKRK- 115 (377)
T ss_pred ccccccccccccCcc---hhh-----ccccchhHHHHHHHHHHHHhc------ccCCCCEEEEeccchHHHHHHHHHHh-
Confidence 000000000000000 000 000011111222222333220 024899999996443 2232222221
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
.++|+++++|+........ ..+ ....++..+..+|.++++|+.
T Consensus 116 ------~~~~~i~~~h~~~~~~~~~----------~~~---------------------~~~~~~~~~~~~d~ii~~s~~ 158 (377)
T cd03798 116 ------LGIPLVVTLHGSDVNLLPR----------KRL---------------------LRALLRRALRRADAVIAVSEA 158 (377)
T ss_pred ------cCCCEEEEeecchhcccCc----------hhh---------------------HHHHHHHHHhcCCeEEeCCHH
Confidence 4689999999873211000 000 123456678899999999999
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
.++.+.... ....++.+++||+|...+.+.... +. ++++.. .+.++|+
T Consensus 159 ~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~-----------------~~---~~~~~~--~~~~~i~ 206 (377)
T cd03798 159 LADELKALG----------IDPEKVTVIPNGVDTERFSPADRA-----------------EA---RKLGLP--EDKKVIL 206 (377)
T ss_pred HHHHHHHhc----------CCCCceEEcCCCcCcccCCCcchH-----------------HH---HhccCC--CCceEEE
Confidence 988876421 246789999999999888765321 11 333332 4678999
Q ss_pred EEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCC--hhhhhhhh
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFN--VPISHRIT 540 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~--~~l~~~~~ 540 (542)
++|++.+.||++.++++++.+.+. +++|+++|.|+. .+.++++++++. .++ .+.|+. +++..++.
T Consensus 207 ~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~--~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~ 277 (377)
T cd03798 207 FVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL--REALEALAAELGLEDRV-TFLGAVPHEEVPAYYA 277 (377)
T ss_pred EeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc--hHHHHHHHHhcCCcceE-EEeCCCCHHHHHHHHH
Confidence 999999999999999999998753 799999999874 456666665443 344 577873 45665554
No 62
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.62 E-value=7.4e-15 Score=156.08 Aligned_cols=128 Identities=17% Similarity=0.219 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHH
Q 009139 374 NVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCK 453 (542)
Q Consensus 374 ~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k 453 (542)
.+++..++.+|.|+++|+..++.+.+... ....++.+||||||.+.|.|.....
T Consensus 164 ~~e~~~~~~ad~vi~~S~~~~~~l~~~~~---------~~~~~v~vipngvd~~~f~~~~~~~----------------- 217 (397)
T TIGR03087 164 AYERAIAARFDAATFVSRAEAELFRRLAP---------EAAGRITAFPNGVDADFFSPDRDYP----------------- 217 (397)
T ss_pred HHHHHHHhhCCeEEEcCHHHHHHHHHhCC---------CCCCCeEEeecccchhhcCCCcccc-----------------
Confidence 46788899999999999999888764211 2357899999999999887643210
Q ss_pred HHHHHHhCCCCCCCCCEEEEEccCccccCHHHHH----HHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcCCCEEE
Q 009139 454 IALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIR----LAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYKDKYRG 527 (542)
Q Consensus 454 ~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~Li----eA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~ 527 (542)
. .+ .++.++|+|+||+.++||++.++ ++++.+.+ ++++|+|+|+|+. +.++++.. ..+| .
T Consensus 218 ----~--~~--~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~---~~~~~l~~--~~~V-~ 283 (397)
T TIGR03087 218 ----N--PY--PPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS---PAVRALAA--LPGV-T 283 (397)
T ss_pred ----C--CC--CCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh---HHHHHhcc--CCCe-E
Confidence 0 01 13567999999999999999988 45555543 4899999999974 34555432 2355 5
Q ss_pred EccCChhhhhhhhc
Q 009139 528 WVGFNVPISHRITA 541 (542)
Q Consensus 528 ~~Gy~~~l~~~~~A 541 (542)
|.|+.+++..++.+
T Consensus 284 ~~G~v~~~~~~~~~ 297 (397)
T TIGR03087 284 VTGSVADVRPYLAH 297 (397)
T ss_pred EeeecCCHHHHHHh
Confidence 88998888776654
No 63
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.60 E-value=9.2e-14 Score=144.45 Aligned_cols=250 Identities=16% Similarity=0.065 Sum_probs=153.8
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
+|++.+. ..||-..++..|+++|.++||+|+|+|....... . ...
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~---~--------------------------~~~ 45 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEA---R--------------------------LVP 45 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh---h--------------------------ccc
Confidence 4666664 3689999999999999999999999987542110 0 001
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhc
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKY 312 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~ 312 (542)
..+++++.++.+.+.... .+ .....+..+.....++.+.++ ..+||+||+|.+..++.+.+++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~i~-----~~~pDvI~~~~~~~~~~~~~~a~~- 110 (350)
T cd03785 46 KAGIPLHTIPVGGLRRKG-SL--------KKLKAPFKLLKGVLQARKILK-----KFKPDVVVGFGGYVSGPVGLAAKL- 110 (350)
T ss_pred ccCCceEEEEecCcCCCC-hH--------HHHHHHHHHHHHHHHHHHHHH-----hcCCCEEEECCCCcchHHHHHHHH-
Confidence 135677766543221100 00 001111111112222222222 348999999987655444444332
Q ss_pred CCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChh
Q 009139 313 RPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392 (542)
Q Consensus 313 ~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~ 392 (542)
.++|+|++.|+. ++ . + ..+..++.+|.|+++|+.
T Consensus 111 ------~~~p~v~~~~~~-----~~----------~-~------------------------~~~~~~~~~~~vi~~s~~ 144 (350)
T cd03785 111 ------LGIPLVIHEQNA-----VP----------G-L------------------------ANRLLARFADRVALSFPE 144 (350)
T ss_pred ------hCCCEEEEcCCC-----Cc----------c-H------------------------HHHHHHHhhCEEEEcchh
Confidence 478998765543 11 0 0 012234568999999987
Q ss_pred hHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEE
Q 009139 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIG 472 (542)
Q Consensus 393 ~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIl 472 (542)
..+. .+..++.+|+||+|.+.+.+. .. +++++++ ++.++|+
T Consensus 145 ~~~~---------------~~~~~~~~i~n~v~~~~~~~~---------------------~~-~~~~~~~--~~~~~i~ 185 (350)
T cd03785 145 TAKY---------------FPKDKAVVTGNPVREEILALD---------------------RE-RARLGLR--PGKPTLL 185 (350)
T ss_pred hhhc---------------CCCCcEEEECCCCchHHhhhh---------------------hh-HHhcCCC--CCCeEEE
Confidence 6543 135789999999998766432 01 6677775 4678898
Q ss_pred EEccCccccCHH-HHHHHHHhhhcCCcEE-EEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 473 FIGRLDYQKGID-LIRLAAPEILADDIQF-VMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 473 fVGRl~~~KGid-~LieA~~~L~~~dv~L-VIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
++|+....|+.+ .+++|++.+.+.++++ +++|+|. .+.+++..+++.+++ .+.||.+++..++.+
T Consensus 186 ~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~---~~~l~~~~~~~~~~v-~~~g~~~~~~~~l~~ 252 (350)
T cd03785 186 VFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD---LEEVKKAYEELGVNY-EVFPFIDDMAAAYAA 252 (350)
T ss_pred EECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc---HHHHHHHHhccCCCe-EEeehhhhHHHHHHh
Confidence 999888888775 4568888886556664 4778883 456777766665566 589998888877754
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.59 E-value=3.8e-13 Score=147.20 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=85.9
Q ss_pred cCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCC
Q 009139 383 ADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGL 462 (542)
Q Consensus 383 ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl 462 (542)
||.|+++|..+. ++. ...+ ...||||++.|.|... ...++++|+
T Consensus 499 cD~VIaPS~atq-~L~---------------~~vI-~nVnGVDte~F~P~~r-------------------~~~~r~lgi 542 (794)
T PLN02501 499 CHKVLRLSAATQ-DLP---------------KSVI-CNVHGVNPKFLKIGEK-------------------VAEERELGQ 542 (794)
T ss_pred CCEEEcCCHHHH-Hhc---------------ccce-eecccccccccCCcch-------------------hHHHHhcCC
Confidence 899999997665 321 1122 2227999999988632 122256676
Q ss_pred CCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhh
Q 009139 463 PIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRIT 540 (542)
Q Consensus 463 ~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~ 540 (542)
+. ..+.++|+|||.++||++.||+|++.+.+ .+++|+|+|+|+. ++.+++++.++..++ .|+|+.++...++.
T Consensus 543 ~~--~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~--reeLe~la~eLgL~V-~FLG~~dd~~~lya 617 (794)
T PLN02501 543 QA--FSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGED--AHEVQRAAKRLDLNL-NFLKGRDHADDSLH 617 (794)
T ss_pred cc--ccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCcc--HHHHHHHHHHcCCEE-EecCCCCCHHHHHH
Confidence 42 33568999999999999999999998865 3899999999984 778888888876554 68899877765554
No 65
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.59 E-value=4.6e-14 Score=153.81 Aligned_cols=189 Identities=19% Similarity=0.256 Sum_probs=127.3
Q ss_pred CCccEEEECCCc-hhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhh-hhcCCC--hhhhccccccccccccc
Q 009139 289 GEKCIFLVNDWH-AGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATY-KNLGLP--SEWYGALEWVFPTWART 364 (542)
Q Consensus 289 ~~pDIIH~H~~~-~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~-~~lgl~--~~~~~~l~~~~~~~~~~ 364 (542)
.++||||+|... +++++.+++.. .++|+|+|.|+.. +.... ...... ..++.. .|.
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~-------~~~p~I~t~Hg~~-----~~e~~~~~~~~~~~~~~~~~------~~~-- 231 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR-------RGTPFLLTEHGIY-----TRERKIELLQADWEMSYFRR------LWI-- 231 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH-------hCCCEEEecCCcc-----HHHHHHHHHhcccchHHHHH------HHH--
Confidence 488999999753 34454444433 5899999999862 11100 000000 000000 000
Q ss_pred ccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCccccccccccc
Q 009139 365 HALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSID 444 (542)
Q Consensus 365 ~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~ 444 (542)
.....+.+.+++.||.|+++|+..++.+... ..+++|+.+||||+|.+.|.+....
T Consensus 232 -----~~~~~l~~~~~~~ad~Ii~~s~~~~~~~~~~----------g~~~~ki~vIpNgid~~~f~~~~~~--------- 287 (475)
T cd03813 232 -----RFFESLGRLAYQAADRITTLYEGNRERQIED----------GADPEKIRVIPNGIDPERFAPARRA--------- 287 (475)
T ss_pred -----HHHHHHHHHHHHhCCEEEecCHHHHHHHHHc----------CCCHHHeEEeCCCcCHHHcCCcccc---------
Confidence 0112356778899999999999887655431 1356899999999999888764210
Q ss_pred ccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCc--hhhHHHHHHHHHH
Q 009139 445 DLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGD--PQFESWMRDTEAT 520 (542)
Q Consensus 445 d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~--~~~~~~l~~la~~ 520 (542)
.. .++.++|+|+||+.+.||++.+++|++.+.+ .+++|+|+|+|+ +.+.+++++++++
T Consensus 288 ----------------~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~ 349 (475)
T cd03813 288 ----------------RP--EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVES 349 (475)
T ss_pred ----------------cc--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHH
Confidence 01 2367899999999999999999999999875 489999999984 4677888888887
Q ss_pred cC--CCEEEEccCChhhhhhhhc
Q 009139 521 YK--DKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 521 ~~--~~v~~~~Gy~~~l~~~~~A 541 (542)
++ ++| .|+| .+++..++.+
T Consensus 350 l~l~~~V-~f~G-~~~v~~~l~~ 370 (475)
T cd03813 350 LGLEDNV-KFTG-FQNVKEYLPK 370 (475)
T ss_pred hCCCCeE-EEcC-CccHHHHHHh
Confidence 64 455 5889 6667766643
No 66
>PLN02949 transferase, transferring glycosyl groups
Probab=99.56 E-value=5.1e-13 Score=144.69 Aligned_cols=127 Identities=11% Similarity=-0.025 Sum_probs=92.9
Q ss_pred HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHH
Q 009139 375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKI 454 (542)
Q Consensus 375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~ 454 (542)
++..+.+.+|.|+++|+..++.+.+.. ..+.++.+|+||+|++.+.....
T Consensus 213 l~~~~~~~ad~ii~nS~~t~~~l~~~~----------~~~~~i~vvyp~vd~~~~~~~~~-------------------- 262 (463)
T PLN02949 213 MYGLVGRCAHLAMVNSSWTKSHIEALW----------RIPERIKRVYPPCDTSGLQALPL-------------------- 262 (463)
T ss_pred HHHHHcCCCCEEEECCHHHHHHHHHHc----------CCCCCeEEEcCCCCHHHcccCCc--------------------
Confidence 456667889999999999988875421 12357899999999866532110
Q ss_pred HHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc------CCcEEEEEecCc----hhhHHHHHHHHHHc--C
Q 009139 455 ALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA------DDIQFVMLGSGD----PQFESWMRDTEATY--K 522 (542)
Q Consensus 455 ~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~------~dv~LVIvG~G~----~~~~~~l~~la~~~--~ 522 (542)
....+.++++++||+.++||++++|+|++++.+ .+++|+|+|++. ..+.++++++++++ .
T Consensus 263 --------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~ 334 (463)
T PLN02949 263 --------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD 334 (463)
T ss_pred --------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC
Confidence 001255799999999999999999999998753 379999999873 23557788888876 3
Q ss_pred CCEEEEccCC--hhhhhhhh
Q 009139 523 DKYRGWVGFN--VPISHRIT 540 (542)
Q Consensus 523 ~~v~~~~Gy~--~~l~~~~~ 540 (542)
++| .|+|+. +++..++.
T Consensus 335 ~~V-~f~g~v~~~el~~ll~ 353 (463)
T PLN02949 335 GDV-EFHKNVSYRDLVRLLG 353 (463)
T ss_pred CcE-EEeCCCCHHHHHHHHH
Confidence 556 578874 66666654
No 67
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.51 E-value=1.6e-13 Score=126.91 Aligned_cols=175 Identities=24% Similarity=0.222 Sum_probs=88.1
Q ss_pred EecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEeeeCCe
Q 009139 157 VTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGV 236 (542)
Q Consensus 157 Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~gv 236 (542)
++..+.+ ..||+|+++.+|+++|+++||+|+|+++....... ...
T Consensus 3 i~~~~~~--~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~---------------------------------~~~ 47 (177)
T PF13439_consen 3 ITNIFLP--NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIE---------------------------------EEL 47 (177)
T ss_dssp EECC-TT--SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-S---------------------------------STE
T ss_pred EEEecCC--CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccch---------------------------------hhc
Confidence 3444556 46999999999999999999999999987533210 000
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhcCCCC
Q 009139 237 DWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHG 316 (542)
Q Consensus 237 ~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~~~~~ 316 (542)
.......+..... ...........+.+.++. .+|||||+|.+...........
T Consensus 48 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~--------~~~DiVh~~~~~~~~~~~~~~~------ 100 (177)
T PF13439_consen 48 VKIFVKIPYPIRK-------------RFLRSFFFMRRLRRLIKK--------EKPDIVHIHGPPAFWIALLACR------ 100 (177)
T ss_dssp EEE---TT-SSTS-------------S--HHHHHHHHHHHHHHH--------HT-SEEECCTTHCCCHHHHHHH------
T ss_pred cceeeeeeccccc-------------ccchhHHHHHHHHHHHHH--------cCCCeEEecccchhHHHHHhcc------
Confidence 0000000100000 011111122223333322 3899999998765544433221
Q ss_pred CCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChhhHHH
Q 009139 317 VYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWE 396 (542)
Q Consensus 317 ~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~ 396 (542)
++|+|+|+|+.... .. ........+..+. ...++...+.+|.++++|+..+++
T Consensus 101 ---~~~~v~~~H~~~~~----~~---~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ii~vS~~~~~~ 153 (177)
T PF13439_consen 101 ---KVPIVYTIHGPYFE----RR---FLKSKLSPYSYLN-----------------FRIERKLYKKADRIIAVSESTKDE 153 (177)
T ss_dssp ---CSCEEEEE-HHH------HH---TTTTSCCCHHHHH-----------------HCTTHHHHCCSSEEEESSHHHHHH
T ss_pred ---CCCEEEEeCCCccc----cc---ccccccchhhhhh-----------------hhhhhhHHhcCCEEEEECHHHHHH
Confidence 58999999986310 00 0000000000000 011233467899999999999999
Q ss_pred HHhhccCCchhhhhhcCCccEEEEeCCCcCCCcC
Q 009139 397 ITTVEGGYGLHEILSSRKSVLNGITNGIDITEWN 430 (542)
Q Consensus 397 l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~ 430 (542)
+.+ . ..++.|+.+||||||++.|.
T Consensus 154 l~~-~---------~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 154 LIK-F---------GIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHH-H---------T--SS-EEE----B-CCCH-
T ss_pred HHH-h---------CCcccCCEEEECCccHHHcC
Confidence 875 2 24579999999999999873
No 68
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.51 E-value=1.4e-12 Score=135.56 Aligned_cols=247 Identities=15% Similarity=0.057 Sum_probs=139.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
|||++++.+ .||-.....+|+++|.++||+|+|++...... . .+ .
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~--~~-------------------------~ 45 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--K--RL-------------------------V 45 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--h--cc-------------------------c
Confidence 789988754 34444455799999999999999998643110 0 00 0
Q ss_pred eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHh
Q 009139 232 YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASK 311 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~ 311 (542)
...|++++.++...+... ... ........+.....++.+.++ ..+||+||+|.+.+.+.+.+++..
T Consensus 46 ~~~g~~~~~i~~~~~~~~-~~~--------~~l~~~~~~~~~~~~l~~~i~-----~~~pDvVi~~~~~~~~~~~~~~~~ 111 (348)
T TIGR01133 46 PKAGIEFYFIPVGGLRRK-GSF--------RLIKTPLKLLKAVFQARRILK-----KFKPDAVIGFGGYVSGPAGLAAKL 111 (348)
T ss_pred ccCCCceEEEeccCcCCC-ChH--------HHHHHHHHHHHHHHHHHHHHH-----hcCCCEEEEcCCcccHHHHHHHHH
Confidence 114667766643221110 000 001011111111222222222 358999999987665554443432
Q ss_pred cCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecCh
Q 009139 312 YRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSK 391 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~ 391 (542)
.++|+|++.|+. .+ . + ..+...+.+|.++++|+
T Consensus 112 -------~~~p~v~~~~~~-----~~----------~-~------------------------~~~~~~~~~d~ii~~~~ 144 (348)
T TIGR01133 112 -------LGIPLFHHEQNA-----VP----------G-L------------------------TNKLLSRFAKKVLISFP 144 (348)
T ss_pred -------cCCCEEEECCCC-----Cc----------c-H------------------------HHHHHHHHhCeeEECch
Confidence 467887544422 10 0 0 11233467999999998
Q ss_pred hhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEE
Q 009139 392 GYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLI 471 (542)
Q Consensus 392 ~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vI 471 (542)
...+.+ +..+|+||+|...+.+.. .+++++++ ++.++|
T Consensus 145 ~~~~~~------------------~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~--~~~~~i 182 (348)
T TIGR01133 145 GAKDHF------------------EAVLVGNPVRQEIRSLPV----------------------PRERFGLR--EGKPTI 182 (348)
T ss_pred hHhhcC------------------CceEEcCCcCHHHhcccc----------------------hhhhcCCC--CCCeEE
Confidence 765432 236899999976554321 12356765 467899
Q ss_pred EEEccCccccCHHH-HHHHHHhhhcCCcEEEE-EecCchhhHHHHHHHHHHcCC-CEEEEccCChhhhhhhhc
Q 009139 472 GFIGRLDYQKGIDL-IRLAAPEILADDIQFVM-LGSGDPQFESWMRDTEATYKD-KYRGWVGFNVPISHRITA 541 (542)
Q Consensus 472 lfVGRl~~~KGid~-LieA~~~L~~~dv~LVI-vG~G~~~~~~~l~~la~~~~~-~v~~~~Gy~~~l~~~~~A 541 (542)
+++|+...+|++.. +++|++.+.+.++++++ +|+++ .+.+++.+++++. +++.|. +. ++..++.+
T Consensus 183 ~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~---~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ 250 (348)
T TIGR01133 183 LVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND---LEKVKNVYQELGIEAIVTFI-DE-NMAAAYAA 250 (348)
T ss_pred EEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch---HHHHHHHHhhCCceEEecCc-cc-CHHHHHHh
Confidence 99999988999754 56898888655666654 44443 3567776666542 333344 22 66666544
No 69
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.50 E-value=2e-13 Score=124.08 Aligned_cols=160 Identities=23% Similarity=0.255 Sum_probs=86.3
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEeeeCCeEEEEEcCCCCC
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYH 247 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~~~ 247 (542)
||+++++.+|+++|+++||+|+|+++....... ....++++++.++.+...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 51 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDD-----------------------------EEEEDGVRVHRLPLPRRP 51 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG------------------------------SEEETTEEEEEE--S-SS
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCccc-----------------------------ccccCCceEEeccCCccc
Confidence 899999999999999999999999987532100 123467888877544321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEe
Q 009139 248 RPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVI 327 (542)
Q Consensus 248 ~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~Ti 327 (542)
. ... ..++ ......++.. ...+||+||+|++..++++.+++.. .++|+|+|+
T Consensus 52 ~---~~~---------~~~~---~~~~~~~l~~------~~~~~Dvv~~~~~~~~~~~~~~~~~-------~~~p~v~~~ 103 (160)
T PF13579_consen 52 W---PLR---------LLRF---LRRLRRLLAA------RRERPDVVHAHSPTAGLVAALARRR-------RGIPLVVTV 103 (160)
T ss_dssp S---GGG---------HCCH---HHHHHHHCHH------CT---SEEEEEHHHHHHHHHHHHHH-------HT--EEEE-
T ss_pred h---hhh---------hHHH---HHHHHHHHhh------hccCCeEEEecccchhHHHHHHHHc-------cCCcEEEEE
Confidence 0 000 0111 1122222210 1358999999997666666555522 479999999
Q ss_pred cCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchh
Q 009139 328 HNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLH 407 (542)
Q Consensus 328 H~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~ 407 (542)
|+...... ..+... ....+++..++.||.|+++|+..++.+.+ .
T Consensus 104 h~~~~~~~------------~~~~~~-----------------~~~~~~~~~~~~ad~vi~~S~~~~~~l~~-~------ 147 (160)
T PF13579_consen 104 HGTLFRRG------------SRWKRR-----------------LYRWLERRLLRRADRVIVVSEAMRRYLRR-Y------ 147 (160)
T ss_dssp SS-T------------------HHHH-----------------HHHHHHHHHHHH-SEEEESSHHHHHHHHH-H------
T ss_pred CCCchhhc------------cchhhH-----------------HHHHHHHHHHhcCCEEEECCHHHHHHHHH-h------
Confidence 98532110 011110 01235678889999999999999999875 2
Q ss_pred hhhhcCCccEEEEeCC
Q 009139 408 EILSSRKSVLNGITNG 423 (542)
Q Consensus 408 ~~l~~~~~ki~vIpNG 423 (542)
..+++|+.|||||
T Consensus 148 ---g~~~~ri~vipnG 160 (160)
T PF13579_consen 148 ---GVPPDRIHVIPNG 160 (160)
T ss_dssp ------GGGEEE----
T ss_pred ---CCCCCcEEEeCcC
Confidence 1457899999998
No 70
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.43 E-value=3.9e-12 Score=132.38 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHH
Q 009139 375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKI 454 (542)
Q Consensus 375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~ 454 (542)
+++.+++.+|.|+++|+.+++.+.+.. ..+..+|+||+|.+.|.+..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~~~------------~~~~~vi~~~~d~~~~~~~~--------------------- 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKKYY------------GRDATVIYPPVDTDRFTPAE--------------------- 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHHHh------------CCCcEEECCCCCHhhcCcCC---------------------
Confidence 556678899999999999998886421 23567899999998876531
Q ss_pred HHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCCh-
Q 009139 455 ALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNV- 533 (542)
Q Consensus 455 ~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~- 533 (542)
...+.++|+||+.++||++.+++|++++. ++|+|+|+|+. .+.+++ ...++| .|+|+..
T Consensus 193 -----------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~--~~~l~~---~~~~~V-~~~g~~~~ 252 (351)
T cd03804 193 -----------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPE--LDRLRA---KAGPNV-TFLGRVSD 252 (351)
T ss_pred -----------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChh--HHHHHh---hcCCCE-EEecCCCH
Confidence 13467999999999999999999999873 89999999974 445554 345666 5889843
Q ss_pred -hhhhhhhc
Q 009139 534 -PISHRITA 541 (542)
Q Consensus 534 -~l~~~~~A 541 (542)
++..++.+
T Consensus 253 ~~~~~~~~~ 261 (351)
T cd03804 253 EELRDLYAR 261 (351)
T ss_pred HHHHHHHHh
Confidence 36666543
No 71
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.40 E-value=2.4e-11 Score=128.38 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=88.5
Q ss_pred HhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHh
Q 009139 381 VTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKEL 460 (542)
Q Consensus 381 ~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~l 460 (542)
+.+|.++++|+..++.+.+. | .+++++.++.|.++. .|.+.. .+..+++++
T Consensus 146 ~~ad~i~~~s~~~~~~l~~~----g------i~~~ki~v~G~p~~~-~f~~~~------------------~~~~~~~~~ 196 (380)
T PRK13609 146 REVDRYFVATDHVKKVLVDI----G------VPPEQVVETGIPIRS-SFELKI------------------NPDIIYNKY 196 (380)
T ss_pred CCCCEEEECCHHHHHHHHHc----C------CChhHEEEECcccCh-HHcCcC------------------CHHHHHHHc
Confidence 45899999999998887642 2 346788877665543 232211 123578889
Q ss_pred CCCCCCCCC-EEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhh
Q 009139 461 GLPIRPDCP-LIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRI 539 (542)
Q Consensus 461 Gl~~~~~~~-vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~ 539 (542)
|++ ++++ ++++.|++...|+++.+++++.+. .+++++++|.+...+.+.++++++++++++ .++||.+++..++
T Consensus 197 ~l~--~~~~~il~~~G~~~~~k~~~~li~~l~~~--~~~~~viv~G~~~~~~~~l~~~~~~~~~~v-~~~g~~~~~~~l~ 271 (380)
T PRK13609 197 QLC--PNKKILLIMAGAHGVLGNVKELCQSLMSV--PDLQVVVVCGKNEALKQSLEDLQETNPDAL-KVFGYVENIDELF 271 (380)
T ss_pred CCC--CCCcEEEEEcCCCCCCcCHHHHHHHHhhC--CCcEEEEEeCCCHHHHHHHHHHHhcCCCcE-EEEechhhHHHHH
Confidence 986 3445 455678999999999999988653 478988875433335678888877776666 5789988887777
Q ss_pred hc
Q 009139 540 TA 541 (542)
Q Consensus 540 ~A 541 (542)
.+
T Consensus 272 ~~ 273 (380)
T PRK13609 272 RV 273 (380)
T ss_pred Hh
Confidence 55
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.32 E-value=4.6e-11 Score=129.68 Aligned_cols=200 Identities=19% Similarity=0.208 Sum_probs=120.1
Q ss_pred CccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccc
Q 009139 290 EKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT 369 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~ 369 (542)
..|+||+|++|..++|.++.... .+.|+++.+|.. +|... .+..+.+
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~------~~~~i~~f~Hip-----fP~~e---------~~~~lp~------------- 177 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERG------PDARIGFFLHIP-----FPSSE---------IFRCLPW------------- 177 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhC------CCCeEEEEEeCC-----CCChH---------HHhhCCC-------------
Confidence 56999999999999998887542 468999999975 23211 1111100
Q ss_pred hhHHHHHHHHHHhcCceeecChhhHHHHHhhcc-CCchhh----h--hhcCCccEEEEeCCCcCCCcCCCCccccccccc
Q 009139 370 GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEG-GYGLHE----I--LSSRKSVLNGITNGIDITEWNPSSDEHIASHYS 442 (542)
Q Consensus 370 ~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~-g~Gl~~----~--l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~ 442 (542)
...+...+..+|.|..-+..+.+.+..... -.+... . +.....++.+||||||++.|.+....
T Consensus 178 ---~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~------- 247 (460)
T cd03788 178 ---REELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAAS------- 247 (460)
T ss_pred ---hHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcC-------
Confidence 001122344566666666555544432100 000000 0 00123578999999999988764221
Q ss_pred ccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC--C----cEEEEEecC-----ch--h
Q 009139 443 IDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD--D----IQFVMLGSG-----DP--Q 509 (542)
Q Consensus 443 ~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~--d----v~LVIvG~G-----~~--~ 509 (542)
...+..+++..+.. +++++|++|||+++.||++.+++|++.+++. + ++|+++|.+ +. .
T Consensus 248 -------~~~~~~~~~~~~~~--~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~ 318 (460)
T cd03788 248 -------PEVQERAAELRERL--GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQE 318 (460)
T ss_pred -------chhHHHHHHHHHhc--CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHH
Confidence 12233344444443 3778999999999999999999999998752 3 678888643 21 3
Q ss_pred hHHHHHHHHHHcC--------CCEEEEccC--Chhhhhhhhc
Q 009139 510 FESWMRDTEATYK--------DKYRGWVGF--NVPISHRITA 541 (542)
Q Consensus 510 ~~~~l~~la~~~~--------~~v~~~~Gy--~~~l~~~~~A 541 (542)
+.+++++++++.. ..++++.|+ .+++..++.+
T Consensus 319 l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 319 LRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 5566666655432 135556664 6677777655
No 73
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.26 E-value=1.3e-10 Score=127.26 Aligned_cols=121 Identities=16% Similarity=0.090 Sum_probs=88.9
Q ss_pred HHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHH
Q 009139 380 IVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKE 459 (542)
Q Consensus 380 l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~ 459 (542)
+..+|.||++|+..++.+......+ .....++.+||||++...+.|..
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~------~~~~~ki~viP~g~~~~~~~~~~-------------------------- 315 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKY------YNIEPRIYTIPVGSLDELQYPEQ-------------------------- 315 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhh------cCCCCcEEEEcCCCcccccCccc--------------------------
Confidence 4678999999999888876432111 12357899999998754443321
Q ss_pred hCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccCChhhh
Q 009139 460 LGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGFNVPIS 536 (542)
Q Consensus 460 lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy~~~l~ 536 (542)
..+..+|+|+||+.++||++.|++|+..+.+ ++++|+|+|+|+. .+.+++++++++ .+.+.|+|+. ++.
T Consensus 316 -----~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~--~~~l~~~i~~~~l~~~V~f~G~~-~~~ 387 (500)
T TIGR02918 316 -----ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE--KQKLQKIINENQAQDYIHLKGHR-NLS 387 (500)
T ss_pred -----ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchh--HHHHHHHHHHcCCCCeEEEcCCC-CHH
Confidence 1134689999999999999999999999875 4899999999984 678888888763 2344689986 566
Q ss_pred hhhh
Q 009139 537 HRIT 540 (542)
Q Consensus 537 ~~~~ 540 (542)
.++.
T Consensus 388 ~~~~ 391 (500)
T TIGR02918 388 EVYK 391 (500)
T ss_pred HHHH
Confidence 6554
No 74
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.24 E-value=3e-10 Score=121.49 Aligned_cols=123 Identities=14% Similarity=0.071 Sum_probs=91.3
Q ss_pred HHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHH
Q 009139 376 LKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIA 455 (542)
Q Consensus 376 ~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~ 455 (542)
.+..++.+|.|+++|+..++.+.+.. ....+++.+++||+|...+.+..
T Consensus 177 ~~~~~~~~d~ii~~S~~~~~~l~~~~---------~~~~~ki~vi~~gv~~~~~~~~~---------------------- 225 (407)
T cd04946 177 RRYLLSSLDAVFPCSEQGRNYLQKRY---------PAYKEKIKVSYLGVSDPGIISKP---------------------- 225 (407)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHHHC---------CCccccEEEEECCcccccccCCC----------------------
Confidence 34457889999999999988876432 13467899999999987654321
Q ss_pred HHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC----CcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEcc
Q 009139 456 LQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD----DIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVG 530 (542)
Q Consensus 456 lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~----dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~G 530 (542)
..++.+.|+++||+.+.||++.|++|+..+.+. +++++++|+|+. .+.++++++++. ...+.|+|
T Consensus 226 --------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~--~~~l~~~~~~~~~~~~V~f~G 295 (407)
T cd04946 226 --------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL--EDTLKELAESKPENISVNFTG 295 (407)
T ss_pred --------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH--HHHHHHHHHhcCCCceEEEec
Confidence 013567899999999999999999999999753 577888999874 677888876543 22346899
Q ss_pred CC--hhhhhhh
Q 009139 531 FN--VPISHRI 539 (542)
Q Consensus 531 y~--~~l~~~~ 539 (542)
|. +++..++
T Consensus 296 ~v~~~e~~~~~ 306 (407)
T cd04946 296 ELSNSEVYKLY 306 (407)
T ss_pred CCChHHHHHHH
Confidence 84 4565554
No 75
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.22 E-value=3.2e-10 Score=120.13 Aligned_cols=128 Identities=18% Similarity=0.119 Sum_probs=94.7
Q ss_pred HhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHh
Q 009139 381 VTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKEL 460 (542)
Q Consensus 381 ~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~l 460 (542)
+.+|.++++|+..++++... | .+++|+.+++++||.+.+.+.. .+..+|+++
T Consensus 149 ~~~d~~~~~s~~~~~~l~~~----g------~~~~ki~v~g~~v~~~f~~~~~------------------~~~~~r~~~ 200 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRALKR----G------LEPSQIRVYGLPIRPSFARAVR------------------PKDELRREL 200 (382)
T ss_pred CCCCEEEECCHHHHHHHHHc----C------CCHHHEEEECcccCHhhccCCC------------------CHHHHHHHc
Confidence 45999999999998887642 2 3568999999999865443321 245688999
Q ss_pred CCCCCCCCCEEEEEccCccccCHHHHHHHHHhhh------cCCcE-EEEEecCchhhHHHHHHHHHHcCCCEEEEccCCh
Q 009139 461 GLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEIL------ADDIQ-FVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNV 533 (542)
Q Consensus 461 Gl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~------~~dv~-LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~ 533 (542)
|++ +++++|+++||....|++..+++++..+. ..+++ ++++|.++. +.+.+++.. ...++ .++||.+
T Consensus 201 gl~--~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~-~~~~L~~~~--~~~~v-~~~G~~~ 274 (382)
T PLN02605 201 GMD--EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK-LQSKLESRD--WKIPV-KVRGFVT 274 (382)
T ss_pred CCC--CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH-HHHHHHhhc--ccCCe-EEEeccc
Confidence 996 47899999999999999999999998754 23565 677887742 455665542 23355 5889999
Q ss_pred hhhhhhhcC
Q 009139 534 PISHRITAG 542 (542)
Q Consensus 534 ~l~~~~~A~ 542 (542)
++..++.|+
T Consensus 275 ~~~~l~~aa 283 (382)
T PLN02605 275 NMEEWMGAC 283 (382)
T ss_pred cHHHHHHhC
Confidence 999888763
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.18 E-value=8.2e-10 Score=119.49 Aligned_cols=201 Identities=19% Similarity=0.215 Sum_probs=122.7
Q ss_pred CccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccc
Q 009139 290 EKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT 369 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~ 369 (542)
.-|+|.+||+|-.++|.+++... .+.++.+.+|-. ||.. +.|..+-+
T Consensus 127 ~~d~vwvhDYhl~l~p~~lr~~~------~~~~igfFlHip-----fP~~---------e~f~~lp~------------- 173 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPAMLRELG------VQNKIGFFLHIP-----FPSS---------EIYRTLPW------------- 173 (456)
T ss_pred CCCEEEEecchhhHHHHHHHhhC------CCCeEEEEEeCC-----CCCh---------HHHhhCCc-------------
Confidence 34899999999999999988653 467899999954 3321 12221111
Q ss_pred hhHHHHHHHHHHhcCceeecChhhHHHHHhhcc-CCchhh-----hhhcCCccEEEEeCCCcCCCcCCCCcccccccccc
Q 009139 370 GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEG-GYGLHE-----ILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSI 443 (542)
Q Consensus 370 ~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~-g~Gl~~-----~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~ 443 (542)
..-...++..||.|..-+..+++.+..... -.|++. ...-...++.++|||||++.|.+.....
T Consensus 174 ---r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~------- 243 (456)
T TIGR02400 174 ---RRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKP------- 243 (456)
T ss_pred ---HHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcCh-------
Confidence 112234667899999988888877754211 001100 0011345789999999999997643210
Q ss_pred cccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC------CcEEEEEe-----cCch--hh
Q 009139 444 DDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD------DIQFVMLG-----SGDP--QF 510 (542)
Q Consensus 444 ~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~------dv~LVIvG-----~G~~--~~ 510 (542)
........+|++++ ++++|++|||+++.||++.+++|++++++. ++.|+++| +++. .+
T Consensus 244 ----~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l 314 (456)
T TIGR02400 244 ----SVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQL 314 (456)
T ss_pred ----hHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHH
Confidence 00011234666653 668999999999999999999999998742 36688775 3332 23
Q ss_pred HHHHHHHHHHcCC--------CEEEEccC--ChhhhhhhhcC
Q 009139 511 ESWMRDTEATYKD--------KYRGWVGF--NVPISHRITAG 542 (542)
Q Consensus 511 ~~~l~~la~~~~~--------~v~~~~Gy--~~~l~~~~~A~ 542 (542)
++.+++++.+..+ .++.+.|+ .+++..++.|+
T Consensus 315 ~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aa 356 (456)
T TIGR02400 315 RRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAA 356 (456)
T ss_pred HHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhC
Confidence 3444444322111 13334444 56777777653
No 77
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.17 E-value=2e-09 Score=101.73 Aligned_cols=183 Identities=20% Similarity=0.223 Sum_probs=113.8
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE 231 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 231 (542)
-||++|.+.-.| ...||.|+.+.+|+..|+++||+|+|.|........ ..
T Consensus 2 kkIaIiGtrGIP-a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~-----------------------------~~ 51 (185)
T PF09314_consen 2 KKIAIIGTRGIP-ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK-----------------------------EF 51 (185)
T ss_pred ceEEEEeCCCCC-cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC-----------------------------Cc
Confidence 489999988778 468999999999999999999999999975322110 01
Q ss_pred eeCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCc-hhHHHHHHHH
Q 009139 232 YREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWH-AGLVPVLLAS 310 (542)
Q Consensus 232 ~~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~-~~~~~~~l~~ 310 (542)
...|++++.++.|..- . ...+.+.+++.. ..++..+. +..+.||||++... .+++..+++.
T Consensus 52 ~y~gv~l~~i~~~~~g----~---------~~si~yd~~sl~--~al~~~~~---~~~~~~ii~ilg~~~g~~~~~~~r~ 113 (185)
T PF09314_consen 52 EYNGVRLVYIPAPKNG----S---------AESIIYDFLSLL--HALRFIKQ---DKIKYDIILILGYGIGPFFLPFLRK 113 (185)
T ss_pred ccCCeEEEEeCCCCCC----c---------hHHHHHHHHHHH--HHHHHHhh---ccccCCEEEEEcCCccHHHHHHHHh
Confidence 2367888888655311 0 112233333211 11111110 11257899999765 3334333333
Q ss_pred hcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeecC
Q 009139 311 KYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390 (542)
Q Consensus 311 ~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS 390 (542)
.. ..+.|+++++|++++.. ...+.+.+++ ....|+.+++.||.+|+.|
T Consensus 114 ~~-----~~g~~v~vN~DGlEWkR-------~KW~~~~k~~--------------------lk~~E~~avk~ad~lIaDs 161 (185)
T PF09314_consen 114 LR-----KKGGKVVVNMDGLEWKR-------AKWGRPAKKY--------------------LKFSEKLAVKYADRLIADS 161 (185)
T ss_pred hh-----hcCCcEEECCCcchhhh-------hhcCHHHHHH--------------------HHHHHHHHHHhCCEEEEcC
Confidence 21 14679999999986321 1111111111 1235778899999999999
Q ss_pred hhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCc
Q 009139 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGID 425 (542)
Q Consensus 391 ~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD 425 (542)
+.+.+.+.+.+ ...+..+|++|.|
T Consensus 162 ~~I~~y~~~~y-----------~~~~s~~IaYGad 185 (185)
T PF09314_consen 162 KGIQDYIKERY-----------GRKKSTFIAYGAD 185 (185)
T ss_pred HHHHHHHHHHc-----------CCCCcEEecCCCC
Confidence 99998887542 1367889999976
No 78
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.14 E-value=8.3e-10 Score=115.70 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=90.3
Q ss_pred HHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHH
Q 009139 380 IVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKE 459 (542)
Q Consensus 380 l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~ 459 (542)
+..+|.|+++|+..++.+..... ...++.+||||++...+.+...
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~~~----------~~~~v~~ip~g~~~~~~~~~~~------------------------- 199 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQFG----------NYNPIYTIPVGSIDPLKLPAQF------------------------- 199 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHHhC----------CCCceEEEcccccChhhcccch-------------------------
Confidence 56799999999998888765321 2345899999999876654310
Q ss_pred hCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcC-CCEEEEccCChhhh
Q 009139 460 LGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYK-DKYRGWVGFNVPIS 536 (542)
Q Consensus 460 lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~-~~v~~~~Gy~~~l~ 536 (542)
...+...|+++||+.++||++.+++|+.++.+ .+++|+|+|.|+. ...++.+.+++. ...+.+.|+.+++.
T Consensus 200 ----~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~ 273 (372)
T cd04949 200 ----KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE--EEKLKELIEELGLEDYVFLKGYTRDLD 273 (372)
T ss_pred ----hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch--HHHHHHHHHHcCCcceEEEcCCCCCHH
Confidence 01245789999999999999999999999875 4899999999975 455666665543 23346889988888
Q ss_pred hhhhc
Q 009139 537 HRITA 541 (542)
Q Consensus 537 ~~~~A 541 (542)
.++..
T Consensus 274 ~~~~~ 278 (372)
T cd04949 274 EVYQK 278 (372)
T ss_pred HHHhh
Confidence 77653
No 79
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.09 E-value=1e-08 Score=110.05 Aligned_cols=133 Identities=10% Similarity=0.012 Sum_probs=89.6
Q ss_pred HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHH
Q 009139 375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKI 454 (542)
Q Consensus 375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~ 454 (542)
+.+..++.+|.|+++|+..++.+... | .+++ +.+++|+ +.+.+.+... ...+.
T Consensus 171 ~~r~~~~~~d~ii~~S~~~~~~l~~~----g------~~~~-i~vi~n~-~~d~~~~~~~---------------~~~~~ 223 (425)
T PRK05749 171 FYRLLFKNIDLVLAQSEEDAERFLAL----G------AKNE-VTVTGNL-KFDIEVPPEL---------------AARAA 223 (425)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHc----C------CCCC-cEecccc-cccCCCChhh---------------HHHHH
Confidence 45566788999999999999887641 2 2345 8888884 3333322111 12345
Q ss_pred HHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcCCC--------
Q 009139 455 ALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYKDK-------- 524 (542)
Q Consensus 455 ~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~~~-------- 524 (542)
.++++++ + +.++|+++|+. .|+.+.|++|++++.+ .+++|+|+|+|+.. .+++++++++++-.
T Consensus 224 ~~r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~ 296 (425)
T PRK05749 224 TLRRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGE 296 (425)
T ss_pred HHHHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCC
Confidence 6777776 3 56889999875 6889999999999865 58999999999742 25677777665422
Q ss_pred ------EEEEccCChhhhhhhhc
Q 009139 525 ------YRGWVGFNVPISHRITA 541 (542)
Q Consensus 525 ------v~~~~Gy~~~l~~~~~A 541 (542)
.+++++..+++..+|.+
T Consensus 297 ~~~~~~~v~l~~~~~el~~~y~~ 319 (425)
T PRK05749 297 PPSADTDVLLGDTMGELGLLYAI 319 (425)
T ss_pred CCCCCCcEEEEecHHHHHHHHHh
Confidence 22344555677776654
No 80
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.08 E-value=3.1e-10 Score=122.55 Aligned_cols=292 Identities=16% Similarity=0.157 Sum_probs=143.9
Q ss_pred EecccCCCcCCChHhHHHhHHHHHHHH-CCCeEEEEEecCCCCCc--------ccchhhhhcccCceeEEeecCCceeEE
Q 009139 157 VTAEAAPYSKTGGLGDVCGSLPVALAA-RGHRVMVVSPRYFNGTA--------ADENFTLAKDLGCCMKICCFGGEQEIA 227 (542)
Q Consensus 157 Vt~e~~P~~~~GGl~~~v~~La~~L~~-~GheV~Vitp~~~~~~~--------~~~~~~~~~~~~~~~~v~~~g~~~~~~ 227 (542)
+++|.+. ++||+-+++..-|..+++ .|.+..+|.|....... .+..+...++. +..-|-...++
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~-----~~~~Gl~v~~G 74 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALES-----MREEGLKVRYG 74 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHH-----HHHTT-EEEEE
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHH-----HHhCCCeEEEe
Confidence 5677766 789999999999999886 69999999997543210 00001111000 00001112222
Q ss_pred EEEeeeCCeEE-EEEcCCCCC-CCCCCCCCCCC-------CCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECC
Q 009139 228 FFHEYREGVDW-VFVDHPSYH-RPGNPYGDING-------AFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVND 298 (542)
Q Consensus 228 ~~~~~~~gv~v-~~i~~p~~~-~~~~~y~~~~~-------~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~ 298 (542)
-| .++|.+. +.++..++. ..+.++...|. ......-...+|+.++...+..+.... .....=|.|+|+
T Consensus 75 RW--lI~G~P~vIL~D~~s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~-~~~~~ViaHfHE 151 (633)
T PF05693_consen 75 RW--LIPGRPIVILFDFGSFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFY-EEKPKVIAHFHE 151 (633)
T ss_dssp EE--SSTT--EEEEEEGGGGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH--S-SEEEEEEEES
T ss_pred ce--eECCcCeEEEEeCchHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEech
Confidence 22 3566654 445543321 11111111110 000111223355555544433221000 012445789999
Q ss_pred CchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHH
Q 009139 299 WHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKG 378 (542)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~ 378 (542)
|+++....+++... ..+.+|+|.|.... |+. .++-...+|..+.. +...+++.....+....++++
T Consensus 152 WmaG~gll~lr~~~------~~VaTvFTTHAT~l-GR~------l~~~~~~~Y~~L~~-~~~d~eA~~~~i~~k~~iEra 217 (633)
T PF05693_consen 152 WMAGVGLLYLRKRK------PDVATVFTTHATLL-GRY------LAANNKDFYNNLDK-FNGDQEAGERNIYHKHSIERA 217 (633)
T ss_dssp GGGTTHHHHHHHTT-------SCEEEEEESS-HH-HHH------HTTTSS-TTTSGTT-S-HHHHHHHTT-HHHHHHHHH
T ss_pred HhHhHHHHHHhccC------CCeeEEEEecccch-hhH------hhcCCCcHHHHhhc-cCccccccCccchHHHHHHHH
Confidence 99988777766532 47889999998731 110 00111112222111 000112222233456789999
Q ss_pred HHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccc-hhHHHHHHH-
Q 009139 379 AIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLS-GKVQCKIAL- 456 (542)
Q Consensus 379 ~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~-~k~~~k~~l- 456 (542)
+...||++++||+-.+.+... +|. +.+=.|+|||+|.+.|..... +. -+..+|+++
T Consensus 218 aA~~AdvFTTVSeITa~Ea~~---------LL~--r~pDvV~pNGl~v~~~~~~~e-----------fqnl~~~~k~ki~ 275 (633)
T PF05693_consen 218 AAHYADVFTTVSEITAKEAEH---------LLK--RKPDVVTPNGLNVDKFPALHE-----------FQNLHAKAKEKIH 275 (633)
T ss_dssp HHHHSSEEEESSHHHHHHHHH---------HHS--S--SEE----B-GGGTSSTTH-----------HHHHHHHHHHHHH
T ss_pred HHHhcCeeeehhhhHHHHHHH---------HhC--CCCCEEcCCCccccccccchH-----------HHHHHHHHHHHHH
Confidence 999999999999999988753 333 223357899999877644311 11 122344433
Q ss_pred ---HHHh-C-CCCCC-CCCEEEEEccCcc-ccCHHHHHHHHHhhh
Q 009139 457 ---QKEL-G-LPIRP-DCPLIGFIGRLDY-QKGIDLIRLAAPEIL 494 (542)
Q Consensus 457 ---r~~l-G-l~~~~-~~~vIlfVGRl~~-~KGid~LieA~~~L~ 494 (542)
+..+ | +..+. +..+|...||.+. .||+|.+|||+.+|-
T Consensus 276 ~fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn 320 (633)
T PF05693_consen 276 EFVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLN 320 (633)
T ss_dssp HHHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHH
Confidence 3333 2 22222 3445666899996 999999999999884
No 81
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.07 E-value=1.1e-08 Score=106.85 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=85.4
Q ss_pred HHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCC-cCCCcCCCCcccccccccccccchhHHHHHHHHH
Q 009139 380 IVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGI-DITEWNPSSDEHIASHYSIDDLSGKVQCKIALQK 458 (542)
Q Consensus 380 l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGV-D~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~ 458 (542)
.+.+|.++++|+..++.+... | .+++++.+++|++ |...+.+... .....++
T Consensus 139 ~~~ad~~~~~s~~~~~~l~~~----G------~~~~kI~vign~v~d~~~~~~~~~-----------------~~~~~~~ 191 (363)
T cd03786 139 DKLSDLHFAPTEEARRNLLQE----G------EPPERIFVVGNTMIDALLRLLELA-----------------KKELILE 191 (363)
T ss_pred HHHhhhccCCCHHHHHHHHHc----C------CCcccEEEECchHHHHHHHHHHhh-----------------ccchhhh
Confidence 456899999999998887642 2 3578999999995 5433221110 0112245
Q ss_pred HhCCCCCCCCCEEEEEccCcc---ccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHc---CCCEEEEcc--
Q 009139 459 ELGLPIRPDCPLIGFIGRLDY---QKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATY---KDKYRGWVG-- 530 (542)
Q Consensus 459 ~lGl~~~~~~~vIlfVGRl~~---~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~---~~~v~~~~G-- 530 (542)
.++++ ++..++++.||+.. .||++.+++|++.+.+.++.+++.|.++ ..+.+++.+.++ .+++ .|+|
T Consensus 192 ~~~~~--~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~--~~~~l~~~~~~~~~~~~~v-~~~~~~ 266 (363)
T cd03786 192 LLGLL--PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR--TRPRIREAGLEFLGHHPNV-LLISPL 266 (363)
T ss_pred hcccC--CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC--hHHHHHHHHHhhccCCCCE-EEECCc
Confidence 67774 34457778999885 7999999999998864456666666555 356666666655 3455 4664
Q ss_pred CChhhhhhhhc
Q 009139 531 FNVPISHRITA 541 (542)
Q Consensus 531 y~~~l~~~~~A 541 (542)
+.+++..++.+
T Consensus 267 ~~~~~~~l~~~ 277 (363)
T cd03786 267 GYLYFLLLLKN 277 (363)
T ss_pred CHHHHHHHHHc
Confidence 45667776653
No 82
>PHA01633 putative glycosyl transferase group 1
Probab=99.05 E-value=1.7e-08 Score=104.65 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=84.4
Q ss_pred HHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHH
Q 009139 380 IVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKE 459 (542)
Q Consensus 380 l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~ 459 (542)
+...+.+|++|+..++.+.+. |+ +.. + +|+||||++.|.|..+ ...+++++
T Consensus 90 m~~~~~vIavS~~t~~~L~~~----G~------~~~-i-~I~~GVD~~~f~p~~~-----------------~~~~~r~~ 140 (335)
T PHA01633 90 LLQDVKFIPNSKFSAENLQEV----GL------QVD-L-PVFHGINFKIVENAEK-----------------LVPQLKQK 140 (335)
T ss_pred HhcCCEEEeCCHHHHHHHHHh----CC------CCc-e-eeeCCCChhhcCccch-----------------hhHHHHHH
Confidence 445678999999999988752 22 122 3 4789999999987532 12456777
Q ss_pred hCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC------CcEEEEEecCchhhHHHHHHHHHHcCCCEEEEc---c
Q 009139 460 LGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD------DIQFVMLGSGDPQFESWMRDTEATYKDKYRGWV---G 530 (542)
Q Consensus 460 lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~------dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~---G 530 (542)
++... ++.++|+++||+.++||++.|++|++++.+. +++|+++|.+ .++++ .+++++. |+ |
T Consensus 141 ~~~~~-~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------~~~~l--~l~~~V~-f~g~~G 210 (335)
T PHA01633 141 LDKDF-PDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------QFTQL--EVPANVH-FVAEFG 210 (335)
T ss_pred hCcCC-CCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------HHHHc--CCCCcEE-EEecCC
Confidence 76542 3678999999999999999999999998752 3588888742 12222 2456664 55 4
Q ss_pred C--Chhhhhhhhc
Q 009139 531 F--NVPISHRITA 541 (542)
Q Consensus 531 y--~~~l~~~~~A 541 (542)
+ .+++..++.+
T Consensus 211 ~~~~~dl~~~y~~ 223 (335)
T PHA01633 211 HNSREYIFAFYGA 223 (335)
T ss_pred CCCHHHHHHHHHh
Confidence 4 4566666554
No 83
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.01 E-value=5.7e-09 Score=111.07 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=84.8
Q ss_pred HhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHh
Q 009139 381 VTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKEL 460 (542)
Q Consensus 381 ~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~l 460 (542)
+.+|.++++|+.+++.+... | .+++++.++.|+|+. .|.+.. .+..+++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~----g------i~~~ki~v~GiPv~~-~f~~~~------------------~~~~~~~~~ 196 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDV----G------IDPSTVKVTGIPIDN-KFETPI------------------DQKQWLIDN 196 (391)
T ss_pred CCCCEEEECCHHHHHHHHHc----C------CCHHHEEEECeecCh-Hhcccc------------------cHHHHHHHc
Confidence 45899999999998888642 2 346788888777763 333221 134567788
Q ss_pred CCCCCCCCC-EEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhh
Q 009139 461 GLPIRPDCP-LIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRI 539 (542)
Q Consensus 461 Gl~~~~~~~-vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~ 539 (542)
|++. +++ ++++.|++...||++.+++++.+. ..++++++++.+.+.+.+.+++.... .+++ .+.||.+++.+++
T Consensus 197 ~l~~--~~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v-~~~G~~~~~~~~~ 271 (391)
T PRK13608 197 NLDP--DKQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICGKSKELKRSLTAKFKS-NENV-LILGYTKHMNEWM 271 (391)
T ss_pred CCCC--CCCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcCCCHHHHHHHHHHhcc-CCCe-EEEeccchHHHHH
Confidence 9863 455 456789999999999999986432 14788876643333344555543322 2355 5889998888887
Q ss_pred hc
Q 009139 540 TA 541 (542)
Q Consensus 540 ~A 541 (542)
.+
T Consensus 272 ~~ 273 (391)
T PRK13608 272 AS 273 (391)
T ss_pred Hh
Confidence 65
No 84
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.91 E-value=3.6e-08 Score=112.99 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=118.1
Q ss_pred CccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhh-hhcCCChhhhccccccccccccccccc
Q 009139 290 EKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATY-KNLGLPSEWYGALEWVFPTWARTHALD 368 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~-~~lgl~~~~~~~l~~~~~~~~~~~~~~ 368 (542)
.-|+|.+||+|-.++|.+++... .+.++-+.+|-. ||...+ .. +|..
T Consensus 133 ~~d~vwvhDYhl~l~p~~lr~~~------~~~~igfFlH~p-----fP~~~~f~~--lp~~------------------- 180 (726)
T PRK14501 133 PGDVVWVHDYQLMLLPAMLRERL------PDARIGFFLHIP-----FPSFEVFRL--LPWR------------------- 180 (726)
T ss_pred CCCEEEEeCchhhhHHHHHHhhC------CCCcEEEEeeCC-----CCChHHHhh--CCCh-------------------
Confidence 34999999999999999988653 467899999976 332211 11 1210
Q ss_pred chhHHHHHHHHHHhcCceeecChhhHHHHHhhcc-CCchh---hh--hhcCCccEEEEeCCCcCCCcCCCCccccccccc
Q 009139 369 TGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEG-GYGLH---EI--LSSRKSVLNGITNGIDITEWNPSSDEHIASHYS 442 (542)
Q Consensus 369 ~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~-g~Gl~---~~--l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~ 442 (542)
.-.-.++..+|.|-.-+..+.+.+..... -.|+. .. +.-...++.++|||||++.|.+.....
T Consensus 181 -----~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~------ 249 (726)
T PRK14501 181 -----EEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDP------ 249 (726)
T ss_pred -----HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCc------
Confidence 11123445566666666655554432110 00000 00 001234689999999999997642110
Q ss_pred ccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC------CcEEEEEec----Cch---h
Q 009139 443 IDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD------DIQFVMLGS----GDP---Q 509 (542)
Q Consensus 443 ~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~------dv~LVIvG~----G~~---~ 509 (542)
. -....+.+|+.+ +++++|++|||+++.||+..+++|++++++. +++|+++|. |.+ .
T Consensus 250 ----~-~~~~~~~lr~~~-----~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~ 319 (726)
T PRK14501 250 ----E-VQEEIRRLRQDL-----RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQE 319 (726)
T ss_pred ----h-HHHHHHHHHHHc-----CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHH
Confidence 0 001123355553 2668999999999999999999999998752 378998873 312 3
Q ss_pred hHHHHHHHHHHcCC--------CEEEEccC--Chhhhhhhhc
Q 009139 510 FESWMRDTEATYKD--------KYRGWVGF--NVPISHRITA 541 (542)
Q Consensus 510 ~~~~l~~la~~~~~--------~v~~~~Gy--~~~l~~~~~A 541 (542)
+++++++++.+..+ .++++.|+ .+++..++.+
T Consensus 320 l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~ 361 (726)
T PRK14501 320 MKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRA 361 (726)
T ss_pred HHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHh
Confidence 44555555544221 25556665 5667777655
No 85
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.89 E-value=8.6e-08 Score=103.90 Aligned_cols=201 Identities=18% Similarity=0.201 Sum_probs=125.4
Q ss_pred CccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccc
Q 009139 290 EKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT 369 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~ 369 (542)
.-|+|-+||+|-.++|.+++... .+.++-+.+|.. ||... .|..+-+
T Consensus 132 ~~d~vWVhDYhL~llp~~LR~~~------~~~~IgfFlHiP-----FPs~e---------ifr~LP~------------- 178 (487)
T TIGR02398 132 EGATVWVHDYNLWLVPGYIRQLR------PDLKIAFFHHTP-----FPSAD---------VFNILPW------------- 178 (487)
T ss_pred CCCEEEEecchhhHHHHHHHHhC------CCCeEEEEeeCC-----CCChH---------HHhhCCc-------------
Confidence 34899999999999999988653 467889999975 33221 1111110
Q ss_pred hhHHHHHHHHHHhcCceeecChhhHHHHHhhccC-Cchhhh------------------------hh--cCCccEEEEeC
Q 009139 370 GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGG-YGLHEI------------------------LS--SRKSVLNGITN 422 (542)
Q Consensus 370 ~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g-~Gl~~~------------------------l~--~~~~ki~vIpN 422 (542)
..-+-.++..||.|-.-+..+++.+...... .|++.. +. -..-++.++|.
T Consensus 179 ---r~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~Pi 255 (487)
T TIGR02398 179 ---REQIIGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPV 255 (487)
T ss_pred ---hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEEC
Confidence 0111234556777777666666655432100 011000 00 01234789999
Q ss_pred CCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC------
Q 009139 423 GIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD------ 496 (542)
Q Consensus 423 GVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~------ 496 (542)
|||++.|.+..... .-....+.+|++++ ++++|+.|+|+++.||+...++|++++++.
T Consensus 256 GID~~~f~~~~~~~-----------~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~g 319 (487)
T TIGR02398 256 GTDPERIRSALAAA-----------SIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLLERRPELLG 319 (487)
T ss_pred EecHHHHHHHhcCc-----------hHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHHHhCccccC
Confidence 99999986542110 00123456888876 568999999999999999999999998752
Q ss_pred CcEEEEEecCc-------hhhHHHHHHHHHHcC--------CCEEEEccC--ChhhhhhhhcC
Q 009139 497 DIQFVMLGSGD-------PQFESWMRDTEATYK--------DKYRGWVGF--NVPISHRITAG 542 (542)
Q Consensus 497 dv~LVIvG~G~-------~~~~~~l~~la~~~~--------~~v~~~~Gy--~~~l~~~~~A~ 542 (542)
++.||++|.+. ..+.+++++++.+.+ .-++.+.++ .+++..++.++
T Consensus 320 kv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~A 382 (487)
T TIGR02398 320 KVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMA 382 (487)
T ss_pred ceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhC
Confidence 58999998753 245677777776642 124556666 45666666553
No 86
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.87 E-value=6.5e-08 Score=111.32 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=94.7
Q ss_pred ccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccch
Q 009139 291 KCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTG 370 (542)
Q Consensus 291 pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~ 370 (542)
-|+|-+||+|-.++|.+++... .+.++.+.+|.. ||.. +.|..+.+ .
T Consensus 148 ~d~vWvhDYhL~llp~~lR~~~------~~~~igfFlHiP-----FPs~---------e~fr~lp~-------------r 194 (797)
T PLN03063 148 GDVVWCHDYHLMFLPQYLKEYN------NKMKVGWFLHTP-----FPSS---------EIYKTLPS-------------R 194 (797)
T ss_pred CCEEEEecchhhhHHHHHHHhC------CCCcEEEEecCC-----CCCH---------HHHhhCCC-------------H
Confidence 3899999999999999998753 578999999976 3322 12211110 0
Q ss_pred hHHHHHHHHHHhcCceeecChhhHHHHHhhccC-Cchhh----h-hhcCCccEEEEeCCCcCCCcCCCCccccccccccc
Q 009139 371 EAVNVLKGAIVTADRLLTVSKGYSWEITTVEGG-YGLHE----I-LSSRKSVLNGITNGIDITEWNPSSDEHIASHYSID 444 (542)
Q Consensus 371 ~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g-~Gl~~----~-l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~ 444 (542)
.-.-.++..||.|-.-+..+++.+...... .|++. + ......+|.+||||||++.|.+....
T Consensus 195 ---~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~--------- 262 (797)
T PLN03063 195 ---SELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCEL--------- 262 (797)
T ss_pred ---HHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcC---------
Confidence 011224556777777766666655431100 00000 0 00123578999999999988654210
Q ss_pred ccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc
Q 009139 445 DLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA 495 (542)
Q Consensus 445 d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~ 495 (542)
.. -......+++.++ ++++|++||||++.||++.+++|++++++
T Consensus 263 -~~-~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~ 306 (797)
T PLN03063 263 -PE-VKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLE 306 (797)
T ss_pred -hh-HHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHH
Confidence 00 0011224455543 56899999999999999999999999875
No 87
>PHA01630 putative group 1 glycosyl transferase
Probab=98.87 E-value=1.9e-08 Score=104.69 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=69.5
Q ss_pred HHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHH
Q 009139 380 IVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKE 459 (542)
Q Consensus 380 l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~ 459 (542)
.+.+|.|+++|+..++.+... |+ ..+.++.+||||||.+.|.|....
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~~----g~-----~~~~~i~vIpNGVd~~~f~~~~~~------------------------ 138 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYTS----GL-----KIPQPIYVIPHNLNPRMFEYKPKE------------------------ 138 (331)
T ss_pred hccCCEEEECCHHHHHHHHHc----CC-----CCCCCEEEECCCCCHHHcCCCccc------------------------
Confidence 467999999999999887642 11 014689999999999888664210
Q ss_pred hCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCc
Q 009139 460 LGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGD 507 (542)
Q Consensus 460 lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~ 507 (542)
..+..+++++||+.++||++.|++|++.+.+ .+++|+|+|++.
T Consensus 139 -----~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~ 183 (331)
T PHA01630 139 -----KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNM 183 (331)
T ss_pred -----cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcc
Confidence 1134567788899999999999999999875 489999999765
No 88
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.85 E-value=3e-07 Score=97.13 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHH
Q 009139 374 NVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCK 453 (542)
Q Consensus 374 ~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k 453 (542)
..++..++.||.|+++|+.+.+.+.. ...++.+|+||+|.+.|.+..... .
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~-------------~~~~i~~i~ngvd~~~f~~~~~~~---------------~- 195 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRR-------------LNPNVVLVPNGVDYEHFAAARDPP---------------P- 195 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhh-------------CCCCEEEcccccCHHHhhcccccC---------------C-
Confidence 35677889999999999998876643 126899999999999887643210 0
Q ss_pred HHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCC-
Q 009139 454 IALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFN- 532 (542)
Q Consensus 454 ~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~- 532 (542)
..+... ..++++|+|+|++.+.+++++|.+++.. .++++|+|+|.|+... ....+. ...+| .++|+.
T Consensus 196 -~~~~~~----~~~~~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~~~~~~--~~~~~~--~~~nV-~~~G~~~ 263 (373)
T cd04950 196 -PPADLA----ALPRPVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGPVDVSI--DPSALL--RLPNV-HYLGPKP 263 (373)
T ss_pred -ChhHHh----cCCCCEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECCCcCcc--ChhHhc--cCCCE-EEeCCCC
Confidence 001111 1367899999999998888877665543 2589999999983211 111111 12466 578985
Q ss_pred -hhhhhhhhc
Q 009139 533 -VPISHRITA 541 (542)
Q Consensus 533 -~~l~~~~~A 541 (542)
+++..++.+
T Consensus 264 ~~~l~~~l~~ 273 (373)
T cd04950 264 YKELPAYLAG 273 (373)
T ss_pred HHHHHHHHHh
Confidence 667776654
No 89
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.79 E-value=1.5e-07 Score=84.53 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=67.5
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEee
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEY 232 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 232 (542)
||++++... +.++.++++.|.++|++|+|+++..... .+ ..
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~-----~~-------------------------~~ 41 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYE-----KY-------------------------EI 41 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCch-----hh-------------------------hH
Confidence 688888653 3468899999999999999999853210 01 12
Q ss_pred eCCeEEEEEcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCch-hHHHHHHHHh
Q 009139 233 REGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHA-GLVPVLLASK 311 (542)
Q Consensus 233 ~~gv~v~~i~~p~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~-~~~~~~l~~~ 311 (542)
.++++++.++.+. +. ...+..+ ....+. ++ ..+|||||+|...+ ++++.+++..
T Consensus 42 ~~~i~~~~~~~~~---k~-------------~~~~~~~-~~l~k~---ik-----~~~~DvIh~h~~~~~~~~~~l~~~~ 96 (139)
T PF13477_consen 42 IEGIKVIRLPSPR---KS-------------PLNYIKY-FRLRKI---IK-----KEKPDVIHCHTPSPYGLFAMLAKKL 96 (139)
T ss_pred hCCeEEEEecCCC---Cc-------------cHHHHHH-HHHHHH---hc-----cCCCCEEEEecCChHHHHHHHHHHH
Confidence 3567777764331 00 0111111 122222 22 34899999999765 5666555543
Q ss_pred cCCCCCCCCCcEEEEecCCC
Q 009139 312 YRPHGVYKDARSILVIHNLS 331 (542)
Q Consensus 312 ~~~~~~~~~ipvV~TiH~~~ 331 (542)
. ..+|+|+|.|+..
T Consensus 97 ~------~~~~~i~~~hg~~ 110 (139)
T PF13477_consen 97 L------KNKKVIYTVHGSD 110 (139)
T ss_pred c------CCCCEEEEecCCe
Confidence 2 2389999999863
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.78 E-value=1.9e-07 Score=98.42 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=75.0
Q ss_pred HHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHH
Q 009139 380 IVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKE 459 (542)
Q Consensus 380 l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~ 459 (542)
.+.+|.++++|+..++.+... ..++.++.|.+... ..+. ..+..++++
T Consensus 132 ~~~~d~i~~~~~~~~~~~~~~-------------g~~~~~~G~p~~~~-~~~~------------------~~~~~~~~~ 179 (380)
T PRK00025 132 AKATDHVLALFPFEAAFYDKL-------------GVPVTFVGHPLADA-IPLL------------------PDRAAARAR 179 (380)
T ss_pred HHHHhhheeCCccCHHHHHhc-------------CCCeEEECcCHHHh-cccc------------------cChHHHHHH
Confidence 567899999999877665421 12344555554321 1110 013467888
Q ss_pred hCCCCCCCCCEE-EEEc-cCccc-cCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHc-CCCEEEEccCCh
Q 009139 460 LGLPIRPDCPLI-GFIG-RLDYQ-KGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATY-KDKYRGWVGFNV 533 (542)
Q Consensus 460 lGl~~~~~~~vI-lfVG-Rl~~~-KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~-~~~v~~~~Gy~~ 533 (542)
+|++ ++.++| ++.| |.... ++++.+++|++.+.+ .+++++++|.++ ...+.++++.+++ +.++.+ +++
T Consensus 180 l~~~--~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~v~~---~~~ 253 (380)
T PRK00025 180 LGLD--PDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP-KRREQIEEALAEYAGLEVTL---LDG 253 (380)
T ss_pred cCCC--CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-hhHHHHHHHHhhcCCCCeEE---Ecc
Confidence 9986 355664 4445 55554 457999999998865 378999997533 2456677766665 434443 334
Q ss_pred hhhhhhhc
Q 009139 534 PISHRITA 541 (542)
Q Consensus 534 ~l~~~~~A 541 (542)
++..++.+
T Consensus 254 ~~~~~~~~ 261 (380)
T PRK00025 254 QKREAMAA 261 (380)
T ss_pred cHHHHHHh
Confidence 66666654
No 91
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.75 E-value=4.8e-07 Score=86.45 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=45.3
Q ss_pred EEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHH--HcCCCEEEEccC--Chhhhhhhh
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEA--TYKDKYRGWVGF--NVPISHRIT 540 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~--~~~~~v~~~~Gy--~~~l~~~~~ 540 (542)
++|++.+.||++.+++|+..+.+. +++++++|.++. ....+..+. ....++ .++|+ .++....++
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~--~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~ 179 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPE--REYLEELLAALLLLDRV-IFLGGLDPEELLALLL 179 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC--hHHHHHHHHhcCCcccE-EEeCCCCcHHHHHHHh
Confidence 999999999999999999999763 899999999875 223332122 234456 46776 344444433
No 92
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.60 E-value=8.2e-07 Score=93.36 Aligned_cols=171 Identities=16% Similarity=0.050 Sum_probs=100.1
Q ss_pred CCccEEEECC-CchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccc
Q 009139 289 GEKCIFLVND-WHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHAL 367 (542)
Q Consensus 289 ~~pDIIH~H~-~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~ 367 (542)
.+||+||+|. +..++.+++++.. .++|++++-++....+.+. .++..
T Consensus 85 ~~pDiv~~~gd~~~~la~a~aa~~-------~~ipv~h~~~g~~s~~~~~-------~~~~~------------------ 132 (365)
T TIGR00236 85 EKPDIVLVQGDTTTTLAGALAAFY-------LQIPVGHVEAGLRTGDRYS-------PMPEE------------------ 132 (365)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHH-------hCCCEEEEeCCCCcCCCCC-------CCccH------------------
Confidence 4899999995 5555666655543 5899986544431100000 00100
Q ss_pred cchhHHHHHHHH-HHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCC-cCCCcCCCCcccccccccccc
Q 009139 368 DTGEAVNVLKGA-IVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGI-DITEWNPSSDEHIASHYSIDD 445 (542)
Q Consensus 368 ~~~~~~~~~k~~-l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGV-D~~~f~p~~~~~~~~~~~~~d 445 (542)
..+.+ .+.+|.++++|+..++.+.+. | .++++|.+++||+ |...+.+..
T Consensus 133 -------~~r~~~~~~ad~~~~~s~~~~~~l~~~----G------~~~~~I~vign~~~d~~~~~~~~------------ 183 (365)
T TIGR00236 133 -------INRQLTGHIADLHFAPTEQAKDNLLRE----N------VKADSIFVTGNTVIDALLTNVEI------------ 183 (365)
T ss_pred -------HHHHHHHHHHHhccCCCHHHHHHHHHc----C------CCcccEEEeCChHHHHHHHHHhh------------
Confidence 01112 235899999999999988752 2 3578999999996 432221110
Q ss_pred cchhHHHHHHHHHHhCCCCCCCCCEEEEEc-cC-ccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHc
Q 009139 446 LSGKVQCKIALQKELGLPIRPDCPLIGFIG-RL-DYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATY 521 (542)
Q Consensus 446 ~~~k~~~k~~lr~~lGl~~~~~~~vIlfVG-Rl-~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~ 521 (542)
..+..++++++. +++++++.+ |. ...||++.+++|+.++.+ .+++++++|.+.....+.+.+.. ..
T Consensus 184 -----~~~~~~~~~~~~----~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~ 253 (365)
T TIGR00236 184 -----AYSSPVLSEFGE----DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHL-GD 253 (365)
T ss_pred -----ccchhHHHhcCC----CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHh-CC
Confidence 012345566663 335666655 54 346999999999999864 37899988755443333333322 23
Q ss_pred CCCEEEEccC
Q 009139 522 KDKYRGWVGF 531 (542)
Q Consensus 522 ~~~v~~~~Gy 531 (542)
.+++ .|+|+
T Consensus 254 ~~~v-~~~~~ 262 (365)
T TIGR00236 254 SKRV-HLIEP 262 (365)
T ss_pred CCCE-EEECC
Confidence 3456 46654
No 93
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.47 E-value=2.9e-06 Score=88.30 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=66.1
Q ss_pred HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHH
Q 009139 375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKI 454 (542)
Q Consensus 375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~ 454 (542)
.++..++.||.||++|+.+++.+... | ....++.+++|..+.....+.
T Consensus 116 ~~~~~~~~aD~iI~~S~~~~~~l~~~----g------~~~~~i~~~~~~~~~~~~~~~---------------------- 163 (333)
T PRK09814 116 EEIDMLNLADVLIVHSKKMKDRLVEE----G------LTTDKIIVQGIFDYLNDIELV---------------------- 163 (333)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHc----C------CCcCceEeccccccccccccc----------------------
Confidence 45667889999999999999988642 2 234577666655433111110
Q ss_pred HHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccC--C
Q 009139 455 ALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGF--N 532 (542)
Q Consensus 455 ~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy--~ 532 (542)
+..+..+.|+|+|++...+++ .+ ...+++|+|+|+|+.. + ...++| .|.|+ .
T Consensus 164 --------~~~~~~~~i~yaG~l~k~~~l---~~-----~~~~~~l~i~G~g~~~--~-------~~~~~V-~f~G~~~~ 217 (333)
T PRK09814 164 --------KTPSFQKKINFAGNLEKSPFL---KN-----WSQGIKLTVFGPNPED--L-------ENSANI-SYKGWFDP 217 (333)
T ss_pred --------ccccCCceEEEecChhhchHH---Hh-----cCCCCeEEEECCCccc--c-------ccCCCe-EEecCCCH
Confidence 001245689999999954322 11 1247899999999741 1 234455 57887 4
Q ss_pred hhhhhhh
Q 009139 533 VPISHRI 539 (542)
Q Consensus 533 ~~l~~~~ 539 (542)
+++..++
T Consensus 218 eel~~~l 224 (333)
T PRK09814 218 EELPNEL 224 (333)
T ss_pred HHHHHHH
Confidence 4555544
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.31 E-value=3.2e-05 Score=82.28 Aligned_cols=114 Identities=12% Similarity=-0.014 Sum_probs=71.0
Q ss_pred HHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHH
Q 009139 379 AIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQK 458 (542)
Q Consensus 379 ~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~ 458 (542)
..+.+|.|+++++...+.+.. ...+..++.|++..+...... .+...|+
T Consensus 135 l~~~~d~v~~~~~~e~~~~~~-------------~g~~~~~vGnPv~~~~~~~~~------------------~~~~~r~ 183 (385)
T TIGR00215 135 IEKATDFLLAILPFEKAFYQK-------------KNVPCRFVGHPLLDAIPLYKP------------------DRKSARE 183 (385)
T ss_pred HHHHHhHhhccCCCcHHHHHh-------------cCCCEEEECCchhhhccccCC------------------CHHHHHH
Confidence 346799999999887665432 113455677877322111000 1345678
Q ss_pred HhCCCCCCCCCEEEEE--ccCcc-ccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHc--CCCEE
Q 009139 459 ELGLPIRPDCPLIGFI--GRLDY-QKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATY--KDKYR 526 (542)
Q Consensus 459 ~lGl~~~~~~~vIlfV--GRl~~-~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~--~~~v~ 526 (542)
++|++ ++.++|++. +|..+ .|++..+++|++.+.+ .++++++++.+.. ..+.++++.+.+ ..++.
T Consensus 184 ~lgl~--~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~v~ 255 (385)
T TIGR00215 184 KLGID--HNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-RRLQFEQIKAEYGPDLQLH 255 (385)
T ss_pred HcCCC--CCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-hHHHHHHHHHHhCCCCcEE
Confidence 88985 467777765 38887 8999999999999865 3788877543321 244455555544 33454
No 95
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.13 E-value=0.00042 Score=78.71 Aligned_cols=248 Identities=19% Similarity=0.192 Sum_probs=140.4
Q ss_pred CccEEEECCCchhHHHH-HHHHhcCCCCC-------CCCCcEEEEecCCCcCC--CCchhhhhhcCCChh----------
Q 009139 290 EKCIFLVNDWHAGLVPV-LLASKYRPHGV-------YKDARSILVIHNLSHQG--VEPAATYKNLGLPSE---------- 349 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~-~l~~~~~~~~~-------~~~ipvV~TiH~~~~~g--~~~~~~~~~lgl~~~---------- 349 (542)
++-+||.|+.|++++.. +++.....+++ ..+.-+++|-|+....+ .||...+..+ +|..
T Consensus 313 ~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~-lpr~l~Ii~eIn~~ 391 (815)
T PRK14986 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKI-LPRHLQIIFEINDY 391 (815)
T ss_pred cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHH-ccHhhhHHHHHHHH
Confidence 55699999998865443 33322211110 12356899999985433 2444333222 1111
Q ss_pred hhccccccccc-c---cccccccc--hhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCC
Q 009139 350 WYGALEWVFPT-W---ARTHALDT--GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNG 423 (542)
Q Consensus 350 ~~~~l~~~~~~-~---~~~~~~~~--~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNG 423 (542)
+...+...+|. + .+...++. ...++|...++..+..|-.||+-..+-+.+..+ ..+....++|+.-|.||
T Consensus 392 fl~~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f----~df~~l~P~kf~niTNG 467 (815)
T PRK14986 392 FLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF----ADFAKIFPGRFCNVTNG 467 (815)
T ss_pred HHHHHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHH----HHHHhhCCCcccccCCC
Confidence 11101011111 0 11111121 124677788899999999999876655433221 01112347788889999
Q ss_pred CcCCCcC----CCCccccccccc------------------ccc----c-chhHHHHHH----HHHHhCCCCCCCCCEEE
Q 009139 424 IDITEWN----PSSDEHIASHYS------------------IDD----L-SGKVQCKIA----LQKELGLPIRPDCPLIG 472 (542)
Q Consensus 424 VD~~~f~----p~~~~~~~~~~~------------------~~d----~-~~k~~~k~~----lr~~lGl~~~~~~~vIl 472 (542)
|...+|- |.-...+...++ ..+ + ..|...|.+ ++++.|+..+++...++
T Consensus 468 V~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~ 547 (815)
T PRK14986 468 VTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDV 547 (815)
T ss_pred CChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceee
Confidence 9998886 321111111111 001 1 123334443 45677888788999999
Q ss_pred EEccCccccCHHH-HHHHHHh---hhcC------CcEEEEEecCchh------hHHHHHHHHH------HcCC--CEEEE
Q 009139 473 FIGRLDYQKGIDL-IRLAAPE---ILAD------DIQFVMLGSGDPQ------FESWMRDTEA------TYKD--KYRGW 528 (542)
Q Consensus 473 fVGRl~~~KGid~-LieA~~~---L~~~------dv~LVIvG~G~~~------~~~~l~~la~------~~~~--~v~~~ 528 (542)
++-|+..+|...+ ++..+.+ +++. ++++|++|+..+. ..+.+...++ ...+ +|++.
T Consensus 548 qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFl 627 (815)
T PRK14986 548 QIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFI 627 (815)
T ss_pred eehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEEe
Confidence 9999999999999 6666544 4432 5889999985442 2334444444 2334 78777
Q ss_pred ccCChhhhhhhhcC
Q 009139 529 VGFNVPISHRITAG 542 (542)
Q Consensus 529 ~Gy~~~l~~~~~A~ 542 (542)
-.|+..++++|..|
T Consensus 628 enY~vslAe~lipg 641 (815)
T PRK14986 628 PNYSVSLAQLIIPA 641 (815)
T ss_pred CCCCHHHHHHhhhh
Confidence 79999999998764
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.12 E-value=0.00073 Score=71.01 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=41.8
Q ss_pred HHHHHHhCCCCCCCCCEEEEEccCccccCH-HHHHHHHHhhhcCCcEEEE-EecCchhhHHHHHHHHHHcCCCEEEEccC
Q 009139 454 IALQKELGLPIRPDCPLIGFIGRLDYQKGI-DLIRLAAPEILADDIQFVM-LGSGDPQFESWMRDTEATYKDKYRGWVGF 531 (542)
Q Consensus 454 ~~lr~~lGl~~~~~~~vIlfVGRl~~~KGi-d~LieA~~~L~~~dv~LVI-vG~G~~~~~~~l~~la~~~~~~v~~~~Gy 531 (542)
...++.++++ +++++|+.+|--.--+.+ +.+.++++.+. .++++++ .|... +++.+.. +. ++. ..+|
T Consensus 173 ~~~~~~~~l~--~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--~~~~~~~----~~-~~~-~~~f 241 (352)
T PRK12446 173 EKGLAFLGFS--RKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--LDDSLQN----KE-GYR-QFEY 241 (352)
T ss_pred hHHHHhcCCC--CCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch--HHHHHhh----cC-CcE-Eecc
Confidence 3456678875 467888777655445556 33444555553 2566654 45432 3333322 22 332 3487
Q ss_pred C-hhhhhhhhc
Q 009139 532 N-VPISHRITA 541 (542)
Q Consensus 532 ~-~~l~~~~~A 541 (542)
- +++.+++.+
T Consensus 242 ~~~~m~~~~~~ 252 (352)
T PRK12446 242 VHGELPDILAI 252 (352)
T ss_pred hhhhHHHHHHh
Confidence 5 678877654
No 97
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.00011 Score=82.46 Aligned_cols=368 Identities=18% Similarity=0.147 Sum_probs=195.8
Q ss_pred CCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCc---cc-----chhhh------hcccC-----ceeEEeecC-
Q 009139 162 APYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTA---AD-----ENFTL------AKDLG-----CCMKICCFG- 221 (542)
Q Consensus 162 ~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~---~~-----~~~~~------~~~~~-----~~~~v~~~g- 221 (542)
.|-. .||+|+......+.++.+|...+.+...|..+.. .. +.+.. -++.. ...+++..|
T Consensus 110 ~p~l-gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~ 188 (750)
T COG0058 110 DPGL-GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGY 188 (750)
T ss_pred Cccc-cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEec
Confidence 3533 4999999999999999999999999988765532 00 00100 01100 122333333
Q ss_pred --CceeEEEEEeeeCCeEEEEEcCCCC-----CC--CCCCCCCCCCCCCChHHHH---HHHHHHHHHhcccc-CCCCCCC
Q 009139 222 --GEQEIAFFHEYREGVDWVFVDHPSY-----HR--PGNPYGDINGAFGDNQFRY---TLLCYAACEAPLVL-PLGGFTY 288 (542)
Q Consensus 222 --~~~~~~~~~~~~~gv~v~~i~~p~~-----~~--~~~~y~~~~~~~~~~~~r~---~~~~~a~~~~~~~l-~~~~f~~ 288 (542)
....+++|..+...+++++.+...- .+ ...+|+.++ ..+|+ -++..+.++.+..+ ..... .
T Consensus 189 ~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds-----~elRl~Qeyfl~~agvq~I~~~~~~~~~-~ 262 (750)
T COG0058 189 DNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDS-----KELRLKQEYFLGSAGVQDILARGHLEHH-D 262 (750)
T ss_pred cCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCc-----HHHHHhhhheeeeHHHHHHHHHhhhccc-c
Confidence 2344566766665667666643210 01 023454321 23342 23333333333222 10000 1
Q ss_pred CCccEEEECCCchhHHHH-HHHHhcCCCCC-------CCCCcEEEEecCCCcCC--CCchhhhhhcCCChhh--------
Q 009139 289 GEKCIFLVNDWHAGLVPV-LLASKYRPHGV-------YKDARSILVIHNLSHQG--VEPAATYKNLGLPSEW-------- 350 (542)
Q Consensus 289 ~~pDIIH~H~~~~~~~~~-~l~~~~~~~~~-------~~~ipvV~TiH~~~~~g--~~~~~~~~~lgl~~~~-------- 350 (542)
.++-..|.|+.|++++.. +++......++ ....-+++|.|++...+ .||...++.+ +|..+
T Consensus 263 ~~~~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~-lpr~~~ii~~in~ 341 (750)
T COG0058 263 LDVLADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKL-LPRHLQIIYEINA 341 (750)
T ss_pred ccchhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHH-hhhhhhhHHHHHh
Confidence 255677899988765543 33311111111 12345799999985433 2343333221 11000
Q ss_pred --hcccccccccccccccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCC
Q 009139 351 --YGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITE 428 (542)
Q Consensus 351 --~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~ 428 (542)
........+.. ..+..+....++|...+++.+..|..||+-..+-+.+... ....+..+.||.-+.|||...+
T Consensus 342 ~~l~~~~~~~~~~-~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~----~~~~~~~p~~i~nvTNGIt~rr 416 (750)
T COG0058 342 RFLPEVRLLYLGD-LIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWF----ADFHGLYPEKINNVTNGITPRR 416 (750)
T ss_pred hhhHHHHhhcccc-ccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHH----HHhcccCccccccccCCcCCch
Confidence 00000000000 0011111112677778899999999999877665543211 1112234789999999999998
Q ss_pred cCCCCccccccccccc--------------------cc-------chhHHHHHH----HHHHhCCCCCCCCCEEEEEccC
Q 009139 429 WNPSSDEHIASHYSID--------------------DL-------SGKVQCKIA----LQKELGLPIRPDCPLIGFIGRL 477 (542)
Q Consensus 429 f~p~~~~~~~~~~~~~--------------------d~-------~~k~~~k~~----lr~~lGl~~~~~~~vIlfVGRl 477 (542)
|--...+.+...++.. +. ..|...|++ ...+.|+..+++..+++++-|+
T Consensus 417 Wl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRi 496 (750)
T COG0058 417 WLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRI 496 (750)
T ss_pred hhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhh
Confidence 8543332222221111 00 012233332 3355677777899999999999
Q ss_pred ccccCHHHHHHHHHhhhc-------CCcEEEEEecCchh------hHHHHHHHHHHc--CCCEEEEccCChhhhhhhhcC
Q 009139 478 DYQKGIDLIRLAAPEILA-------DDIQFVMLGSGDPQ------FESWMRDTEATY--KDKYRGWVGFNVPISHRITAG 542 (542)
Q Consensus 478 ~~~KGid~LieA~~~L~~-------~dv~LVIvG~G~~~------~~~~l~~la~~~--~~~v~~~~Gy~~~l~~~~~A~ 542 (542)
.++|.+.+.+.-+.+|.. +.++++++|...|. +...+...++.- ..+|+++-+|+..++++|.-|
T Consensus 497 heYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa 576 (750)
T COG0058 497 HEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPA 576 (750)
T ss_pred hhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhccc
Confidence 999998887766555532 24777888986442 234444444432 357887779999999988643
No 98
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.94 E-value=0.00022 Score=82.71 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=97.0
Q ss_pred ccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccch
Q 009139 291 KCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTG 370 (542)
Q Consensus 291 pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~ 370 (542)
=|+|-+||+|-.++|.+++... .+.++-+.+|.. ||.. +.|..+-+
T Consensus 232 gD~VWVHDYHL~LlP~~LR~~~------p~~~IGfFlHiP-----FPs~---------Eifr~LP~-------------- 277 (934)
T PLN03064 232 GDVVWCHDYHLMFLPKCLKEYN------SNMKVGWFLHTP-----FPSS---------EIHRTLPS-------------- 277 (934)
T ss_pred CCEEEEecchhhHHHHHHHHhC------CCCcEEEEecCC-----CCCh---------HHHhhCCc--------------
Confidence 3899999999999999998753 578899999976 3322 12221111
Q ss_pred hHHHHHHHHHHhcCceeecChhhHHHHHhhcc-CCchhhh---hhc--CCccEEEEeCCCcCCCcCCCCccccccccccc
Q 009139 371 EAVNVLKGAIVTADRLLTVSKGYSWEITTVEG-GYGLHEI---LSS--RKSVLNGITNGIDITEWNPSSDEHIASHYSID 444 (542)
Q Consensus 371 ~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~-g~Gl~~~---l~~--~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~ 444 (542)
..-+-.++-.||.|-.-+..+++.+..... -.|++.. +.. ..-++.++|-|||++.|......
T Consensus 278 --r~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~--------- 346 (934)
T PLN03064 278 --RSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET--------- 346 (934)
T ss_pred --HHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC---------
Confidence 011223556788888877777776654210 0111100 000 12246788999999888643210
Q ss_pred ccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc
Q 009139 445 DLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA 495 (542)
Q Consensus 445 d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~ 495 (542)
.. -....+.++++++ ++++|+.|+|+++.||+...++|++++++
T Consensus 347 -~~-v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~ 390 (934)
T PLN03064 347 -PQ-VQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLE 390 (934)
T ss_pred -hh-HHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHH
Confidence 00 0122346777764 56799999999999999999999999775
No 99
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.91 E-value=4.1e-05 Score=71.01 Aligned_cols=83 Identities=27% Similarity=0.479 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhh---cCCcEEEEEecCchhhHHHHHHHHHHc--CCCEEE
Q 009139 453 KIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEIL---ADDIQFVMLGSGDPQFESWMRDTEATY--KDKYRG 527 (542)
Q Consensus 453 k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~---~~dv~LVIvG~G~~~~~~~l~~la~~~--~~~v~~ 527 (542)
|..+++.++.+ +++++|+|+||+.+.||++.+++|+..+. ..+++|+|+|+++ +...++.+++.+ ..++ .
T Consensus 2 ~~~~~~~~~~~--~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~i-~ 76 (172)
T PF00534_consen 2 KDKLREKLKIP--DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE--YKKELKNLIEKLNLKENI-I 76 (172)
T ss_dssp HHHHHHHTTT---TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC--HHHHHHHHHHHTTCGTTE-E
T ss_pred hHHHHHHcCCC--CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc--cccccccccccccccccc-c
Confidence 55677777775 47899999999999999999999999986 3589999999877 356677777664 3566 4
Q ss_pred EccCCh--hhhhhhh
Q 009139 528 WVGFNV--PISHRIT 540 (542)
Q Consensus 528 ~~Gy~~--~l~~~~~ 540 (542)
|+|+.. ++..++.
T Consensus 77 ~~~~~~~~~l~~~~~ 91 (172)
T PF00534_consen 77 FLGYVPDDELDELYK 91 (172)
T ss_dssp EEESHSHHHHHHHHH
T ss_pred ccccccccccccccc
Confidence 677754 6666654
No 100
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.56 E-value=0.00046 Score=78.41 Aligned_cols=248 Identities=19% Similarity=0.222 Sum_probs=141.9
Q ss_pred CccEEEECCCchhHHH-HHHHHhcCCCCC-------CCCCcEEEEecCCCcCC--CCchhhhhhcCCChhh---------
Q 009139 290 EKCIFLVNDWHAGLVP-VLLASKYRPHGV-------YKDARSILVIHNLSHQG--VEPAATYKNLGLPSEW--------- 350 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~-~~l~~~~~~~~~-------~~~ipvV~TiH~~~~~g--~~~~~~~~~lgl~~~~--------- 350 (542)
++.+||.|+.|++++. -+++.....+++ ....-+++|-|+....+ .||...+..+ +|..+
T Consensus 300 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~-lpr~~~II~~In~~ 378 (797)
T cd04300 300 DKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERL-LPRHLEIIYEINRR 378 (797)
T ss_pred CceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHH-ChHHHHHHHHHHHH
Confidence 7899999998876543 334322211111 12346899999984332 3444333322 12111
Q ss_pred -hccccccccc-cc---ccccccc--hhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCC
Q 009139 351 -YGALEWVFPT-WA---RTHALDT--GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNG 423 (542)
Q Consensus 351 -~~~l~~~~~~-~~---~~~~~~~--~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNG 423 (542)
...+...++. +. +...++. ...++|...++..+..|-.||+-..+-+.+..+ ..+....++|+.-+.||
T Consensus 379 ~~~~~~~~~~~~~~~~~~l~ii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~----~df~~l~P~kf~n~TNG 454 (797)
T cd04300 379 FLEEVRAKYPGDEDRIRRMSIIEEGGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVF----KDFYELYPEKFNNKTNG 454 (797)
T ss_pred HHHHHHHhcCCCHHHHHhhcccccCCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhH----HHHHhhCCCccCCcCCC
Confidence 0000001111 10 1111221 124778888999999999999876655543211 11222357888999999
Q ss_pred CcCCCcCCCCccccc----cccc----------------ccc------c-chhHHHHHH----HHHHhCCCCCCCCCEEE
Q 009139 424 IDITEWNPSSDEHIA----SHYS----------------IDD------L-SGKVQCKIA----LQKELGLPIRPDCPLIG 472 (542)
Q Consensus 424 VD~~~f~p~~~~~~~----~~~~----------------~~d------~-~~k~~~k~~----lr~~lGl~~~~~~~vIl 472 (542)
|...+|--...+.+. ..++ ++| + ..|...|.+ ++++.|+..+++...++
T Consensus 455 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdv 534 (797)
T cd04300 455 ITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDV 534 (797)
T ss_pred CCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEE
Confidence 999888522222111 1111 112 1 123344443 45677888788999999
Q ss_pred EEccCccccCHHH-HHHHH---HhhhcC------CcEEEEEecCchhh------HHHHHHHHHH------cCC--CEEEE
Q 009139 473 FIGRLDYQKGIDL-IRLAA---PEILAD------DIQFVMLGSGDPQF------ESWMRDTEAT------YKD--KYRGW 528 (542)
Q Consensus 473 fVGRl~~~KGid~-LieA~---~~L~~~------dv~LVIvG~G~~~~------~~~l~~la~~------~~~--~v~~~ 528 (542)
++-|+.++|...+ ++..+ .++++. +.++|++|+..|.| ...+...++. ..+ +|++.
T Consensus 535 q~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFl 614 (797)
T cd04300 535 QVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFL 614 (797)
T ss_pred EeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEEe
Confidence 9999999999999 55554 444432 47899999864422 3334444442 223 68777
Q ss_pred ccCChhhhhhhhcC
Q 009139 529 VGFNVPISHRITAG 542 (542)
Q Consensus 529 ~Gy~~~l~~~~~A~ 542 (542)
-.|+..+++.|..|
T Consensus 615 enY~VslAe~iipa 628 (797)
T cd04300 615 PNYNVSLAEKIIPA 628 (797)
T ss_pred CCCChHHHHHhhhh
Confidence 79999999988754
No 101
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.53 E-value=0.0016 Score=69.67 Aligned_cols=138 Identities=18% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCce--EEEEEecccC-------CCcCCChHhHHHhHHHHHHHHC--------CC----eEEEEEecCCCCCcccchhhh
Q 009139 149 RVSY--NIVFVTAEAA-------PYSKTGGLGDVCGSLPVALAAR--------GH----RVMVVSPRYFNGTAADENFTL 207 (542)
Q Consensus 149 ~~~M--kIl~Vt~e~~-------P~~~~GGl~~~v~~La~~L~~~--------Gh----eV~Vitp~~~~~~~~~~~~~~ 207 (542)
+.|| +|++++++-+ ....+||.-+|+.+++++|.+. |- +|.|+|..-+... ...+..
T Consensus 268 RiPmvf~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~--~t~~~q 345 (550)
T PF00862_consen 268 RIPMVFNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAK--GTTCNQ 345 (550)
T ss_dssp HS---SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTT--CGGGTS
T ss_pred hcceeEEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCc--CCCccc
Confidence 4455 8999998621 1236899999999999999753 43 4888875433211 111111
Q ss_pred hcccCceeEEeecCCceeEEEEEeeeCCeEEEEEcCCC-------CCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHhcc
Q 009139 208 AKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPS-------YHRPGNPYGDINGAFGDNQFRYTLLCYAA-CEAPL 279 (542)
Q Consensus 208 ~~~~~~~~~v~~~g~~~~~~~~~~~~~gv~v~~i~~p~-------~~~~~~~y~~~~~~~~~~~~r~~~~~~a~-~~~~~ 279 (542)
.++ .+ ...++..+++++... |..+..+|. ...+| ...+ .++..
T Consensus 346 ~le-----~~-------------~gt~~a~IlRvPF~~~~gi~~kwisrf~lWP--------yLe~f---a~d~~~~i~~ 396 (550)
T PF00862_consen 346 RLE-----KV-------------SGTENARILRVPFGPEKGILRKWISRFDLWP--------YLEEF---ADDAEREILA 396 (550)
T ss_dssp SEE-----EE-------------TTESSEEEEEE-ESESTEEE-S---GGG-GG--------GHHHH---HHHHHHHHHH
T ss_pred ccc-----cc-------------CCCCCcEEEEecCCCCcchhhhccchhhchh--------hHHHH---HHHHHHHHHH
Confidence 100 00 113456777775321 211222221 12222 2222 22222
Q ss_pred ccCCCCCCCCCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCC
Q 009139 280 VLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 330 (542)
Q Consensus 280 ~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~ 330 (542)
.+ ..+||+||.|..-+++++.+++.++ ++|.++|-|.+
T Consensus 397 e~------~~~PdlI~GnYsDgnlvA~LLs~~l-------gv~~~~iaHsL 434 (550)
T PF00862_consen 397 EL------QGKPDLIIGNYSDGNLVASLLSRKL-------GVTQCFIAHSL 434 (550)
T ss_dssp HH------TS--SEEEEEHHHHHHHHHHHHHHH-------T-EEEEE-SS-
T ss_pred Hh------CCCCcEEEeccCcchHHHHHHHhhc-------CCceehhhhcc
Confidence 22 2589999999988899998888764 89999999987
No 102
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.50 E-value=0.00034 Score=79.23 Aligned_cols=249 Identities=18% Similarity=0.172 Sum_probs=142.3
Q ss_pred CccEEEECCCchhHHH-HHHHHhcCCCCC-------CCCCcEEEEecCCCcCC--CCchhhhhhc---------CCChhh
Q 009139 290 EKCIFLVNDWHAGLVP-VLLASKYRPHGV-------YKDARSILVIHNLSHQG--VEPAATYKNL---------GLPSEW 350 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~-~~l~~~~~~~~~-------~~~ipvV~TiH~~~~~g--~~~~~~~~~l---------gl~~~~ 350 (542)
++.+||.|+.|++++. -+++.....+++ ....-+++|-|+....+ .||...+..+ ++...+
T Consensus 297 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~f 376 (794)
T TIGR02093 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRF 376 (794)
T ss_pred cceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHH
Confidence 7899999998876544 334322211111 12345899999984332 3444333221 111111
Q ss_pred hccccccccc-c---cccccccc--hhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCC
Q 009139 351 YGALEWVFPT-W---ARTHALDT--GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGI 424 (542)
Q Consensus 351 ~~~l~~~~~~-~---~~~~~~~~--~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGV 424 (542)
...+...+|. | .+...++. ...++|...++..+..|-.||+-..+-+.+..+ ..+....++|+.-+.|||
T Consensus 377 l~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~----~df~~l~P~kf~n~TNGV 452 (794)
T TIGR02093 377 LAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLL----KDFYELYPEKFNNKTNGI 452 (794)
T ss_pred HHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHH----HHHHhhCCCccCCcCCCC
Confidence 1111111121 1 11122222 224778888999999999999877665553211 111123478889999999
Q ss_pred cCCCcCCCCccccc----cccc----------------ccc------c-chhHHHHH----HHHHHhCCCCCCCCCEEEE
Q 009139 425 DITEWNPSSDEHIA----SHYS----------------IDD------L-SGKVQCKI----ALQKELGLPIRPDCPLIGF 473 (542)
Q Consensus 425 D~~~f~p~~~~~~~----~~~~----------------~~d------~-~~k~~~k~----~lr~~lGl~~~~~~~vIlf 473 (542)
...+|--...+.+. ..++ ++| + ..|...|. .++++.|+..+++...+++
T Consensus 453 t~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq 532 (794)
T TIGR02093 453 TPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQ 532 (794)
T ss_pred CccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchhh
Confidence 99888632222221 1111 111 1 12333444 3456778887889999999
Q ss_pred EccCccccCHHH-HHHHHHh---hhcC------CcEEEEEecCchhh------HHHHHHHHHH------cCC--CEEEEc
Q 009139 474 IGRLDYQKGIDL-IRLAAPE---ILAD------DIQFVMLGSGDPQF------ESWMRDTEAT------YKD--KYRGWV 529 (542)
Q Consensus 474 VGRl~~~KGid~-LieA~~~---L~~~------dv~LVIvG~G~~~~------~~~l~~la~~------~~~--~v~~~~ 529 (542)
+-|+..+|...+ ++..+.+ +++. +.+++++|+..|.| .+.+...++. ..+ +|++.-
T Consensus 533 ~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFle 612 (794)
T TIGR02093 533 VKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVP 612 (794)
T ss_pred heechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEeC
Confidence 999999999999 5555444 4432 56899999864422 3333444432 223 687777
Q ss_pred cCChhhhhhhhcC
Q 009139 530 GFNVPISHRITAG 542 (542)
Q Consensus 530 Gy~~~l~~~~~A~ 542 (542)
.|+..+++.|..|
T Consensus 613 nY~VslAe~iipa 625 (794)
T TIGR02093 613 NYNVSLAELIIPA 625 (794)
T ss_pred CCChHHHHHhhhh
Confidence 9999999988654
No 103
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.48 E-value=0.0017 Score=70.02 Aligned_cols=294 Identities=13% Similarity=0.051 Sum_probs=157.2
Q ss_pred ccccCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHH---------CCCeEEEEEecCCCCCcccchhhhhc-ccCc
Q 009139 144 DKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAA---------RGHRVMVVSPRYFNGTAADENFTLAK-DLGC 213 (542)
Q Consensus 144 ~~~~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~---------~GheV~Vitp~~~~~~~~~~~~~~~~-~~~~ 213 (542)
..++..+.++++++.+. ...||.+.-+..-+-.+.. .||+|.+++....... .+-.+.... .+..
T Consensus 27 ~~t~~~~~~~~~~~~~~----~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~-~~~~~~~~~~~l~~ 101 (495)
T KOG0853|consen 27 VSTPEKPFEHVTFIHPD----LGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALE-MPLLLRCFAETLDG 101 (495)
T ss_pred cccccccchhheeeccc----cccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhc-chHHHHHHHHHhcC
Confidence 44556677889988754 4679999999998999999 9999999996543221 000011000 0000
Q ss_pred eeEEeecCCceeEEE---E--EeeeCCeEEEEEcCC-CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCC
Q 009139 214 CMKICCFGGEQEIAF---F--HEYREGVDWVFVDHP-SYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFT 287 (542)
Q Consensus 214 ~~~v~~~g~~~~~~~---~--~~~~~gv~v~~i~~p-~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~ 287 (542)
...+...|....... . .....++++++++.- .+...... |+ -+..+. .++..+.+.+
T Consensus 102 ~~~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~-------d~-~i~d~~---~~~~~l~~~~------ 164 (495)
T KOG0853|consen 102 TPPILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKV-------DP-IIEDFV---SACVPLLKQL------ 164 (495)
T ss_pred CCceEEEEeecCcccchhhhhhhccceeEEEEeccchhhhhhhhh-------ce-eecchH---HHHHHHHHHh------
Confidence 011111111000000 0 012234455554321 00000000 00 001111 1122222222
Q ss_pred CCCccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccc
Q 009139 288 YGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHAL 367 (542)
Q Consensus 288 ~~~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~ 367 (542)
. .||++|-|.|.+.+...+++.. .+++-+++-|.+..
T Consensus 165 ~-~p~~~~~i~~~~h~~~~lla~r-------~g~~~~l~~~~l~~----------------------------------- 201 (495)
T KOG0853|consen 165 S-GPDVIIKIYFYCHFPDSLLAKR-------LGVLKVLYRHALDK----------------------------------- 201 (495)
T ss_pred c-CCcccceeEEeccchHHHhccc-------cCccceeehhhhhh-----------------------------------
Confidence 1 2778887777666555554432 35666666665421
Q ss_pred cchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccc
Q 009139 368 DTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLS 447 (542)
Q Consensus 368 ~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~ 447 (542)
.+-.....+|++++-|...+..+.... ......++.+.+-+||.+.+.+..-.
T Consensus 202 -------~e~e~~~~~~~~~~ns~~~~~~f~~~~--------~~L~~~d~~~~y~ei~~s~~~~~~~~------------ 254 (495)
T KOG0853|consen 202 -------IEEETTGLAWKILVNSYFTKRQFKATF--------VSLSNSDITSTYPEIDGSWFTYGQYE------------ 254 (495)
T ss_pred -------hhhhhhhccceEecchhhhhhhhhhhh--------hhcCCCCcceeeccccchhccccccc------------
Confidence 001122346777777776666554321 11234458899999998877653210
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc-------CCcEEEEEecC--------chhhHH
Q 009139 448 GKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA-------DDIQFVMLGSG--------DPQFES 512 (542)
Q Consensus 448 ~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~-------~dv~LVIvG~G--------~~~~~~ 512 (542)
.+.+.+...|...+.. ..+.+++-+-|+.|.|+++++++|+.++.. .+.+++++|+. .-.+.+
T Consensus 255 ~~~~~~~~~r~~~~v~--~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~ 332 (495)
T KOG0853|consen 255 SHLELRLPVRLYRGVS--GIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLK 332 (495)
T ss_pred cchhcccccceeeeec--ccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHH
Confidence 0111222333444442 235677888999999999999999998864 25789999942 126788
Q ss_pred HHHHHHHHcC--CCEEEEccC
Q 009139 513 WMRDTEATYK--DKYRGWVGF 531 (542)
Q Consensus 513 ~l~~la~~~~--~~v~~~~Gy 531 (542)
+|++++++++ ++++.|+--
T Consensus 333 el~~lie~~~l~g~~v~~~~s 353 (495)
T KOG0853|consen 333 ELLSLIEEYDLLGQFVWFLPS 353 (495)
T ss_pred HHHHHHHHhCccCceEEEecC
Confidence 8899999873 567767543
No 104
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.40 E-value=0.007 Score=65.60 Aligned_cols=178 Identities=17% Similarity=0.129 Sum_probs=109.7
Q ss_pred ccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccch
Q 009139 291 KCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTG 370 (542)
Q Consensus 291 pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~ 370 (542)
-|+|-+||+|-.++|.+++... .+.++-+.+|.. ||.. +.|..+-+ .
T Consensus 124 ~D~VWVHDYhL~llp~~LR~~~------~~~~IgFFlHiP-----FPs~---------eifr~LP~-------------r 170 (474)
T PRK10117 124 DDIIWIHDYHLLPFASELRKRG------VNNRIGFFLHIP-----FPTP---------EIFNALPP-------------H 170 (474)
T ss_pred CCEEEEeccHhhHHHHHHHHhC------CCCcEEEEEeCC-----CCCh---------HHHhhCCC-------------h
Confidence 4899999999999999988653 467899999975 3322 22221111 0
Q ss_pred hHHHHHHHHHHhcCceeecChhhHHHHHhhccC-Cchhh----hhh--cCCccEEEEeCCCcCCCcCCCCcccccccccc
Q 009139 371 EAVNVLKGAIVTADRLLTVSKGYSWEITTVEGG-YGLHE----ILS--SRKSVLNGITNGIDITEWNPSSDEHIASHYSI 443 (542)
Q Consensus 371 ~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g-~Gl~~----~l~--~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~ 443 (542)
.-.-.++-.+|.|-.-+..+++.+...... .|++. .+. -..-++.+.|-|||++.|......
T Consensus 171 ---~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~-------- 239 (474)
T PRK10117 171 ---DELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAG-------- 239 (474)
T ss_pred ---HHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhc--------
Confidence 112235567888888777777666532110 01110 000 012357788999998877432110
Q ss_pred cccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC------CcEEEEEecC----ch---hh
Q 009139 444 DDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD------DIQFVMLGSG----DP---QF 510 (542)
Q Consensus 444 ~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~------dv~LVIvG~G----~~---~~ 510 (542)
. .....+.++++++ ++++|+-|.|+++.||+..=++|++++++. ++.|+-+... .+ .+
T Consensus 240 --~--~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l 310 (474)
T PRK10117 240 --P--LPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDI 310 (474)
T ss_pred --h--HHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHH
Confidence 0 0112345666664 567999999999999999999999998852 5777766532 12 34
Q ss_pred HHHHHHHHHHc
Q 009139 511 ESWMRDTEATY 521 (542)
Q Consensus 511 ~~~l~~la~~~ 521 (542)
..++.+++.+-
T Consensus 311 ~~~v~~~vg~I 321 (474)
T PRK10117 311 RHQLETEAGRI 321 (474)
T ss_pred HHHHHHHHHHH
Confidence 55666666553
No 105
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.37 E-value=0.00062 Score=77.06 Aligned_cols=247 Identities=17% Similarity=0.160 Sum_probs=139.1
Q ss_pred CccEEEECCCchhHHH-HHHHHhcCCCCC-------CCCCcEEEEecCCCcCC--CCchhhhhhcCCChhh---------
Q 009139 290 EKCIFLVNDWHAGLVP-VLLASKYRPHGV-------YKDARSILVIHNLSHQG--VEPAATYKNLGLPSEW--------- 350 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~-~~l~~~~~~~~~-------~~~ipvV~TiH~~~~~g--~~~~~~~~~lgl~~~~--------- 350 (542)
++.+||.|+.|++++. -+++.....+++ ....-+++|-|+....+ .||...++.+ +|..+
T Consensus 302 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~-Lpr~~~ii~~in~~ 380 (798)
T PRK14985 302 DYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSL-LPRHMQIIKEINTR 380 (798)
T ss_pred CCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHH-hHHHHHHHHHHHHH
Confidence 7899999998876543 344322211111 12346899999985433 3444333222 12110
Q ss_pred -hccccccccc----ccccccccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCc
Q 009139 351 -YGALEWVFPT----WARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGID 425 (542)
Q Consensus 351 -~~~l~~~~~~----~~~~~~~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD 425 (542)
.......++. +++...++. +.++|...++..+..|-.||+-..+-+.+..+ ..+....+.|+.-|.|||.
T Consensus 381 fl~~~~~~~~~d~~~~~~~sii~~-~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f----~df~~l~p~kf~nvTNGVt 455 (798)
T PRK14985 381 FKTLVEKTWPGDKKVWAKLAVVHD-KQVRMANLCVVSGFAVNGVAALHSDLVVKDLF----PEYHQLWPNKFHNVTNGIT 455 (798)
T ss_pred HHHHHHHhCCCcHHHhhhhhhccC-CeeehHHHHHHhcchhHhhHHHHhchhHHhhh----hhhHhhCCCccCCcCCCcC
Confidence 0000011110 011112221 24677888888999999999866554443221 1111234788899999999
Q ss_pred CCCcCCCCcc----cccccc-----------------ccc-cc-----chhHHHHHH----HHHHhCCCCCCCCCEEEEE
Q 009139 426 ITEWNPSSDE----HIASHY-----------------SID-DL-----SGKVQCKIA----LQKELGLPIRPDCPLIGFI 474 (542)
Q Consensus 426 ~~~f~p~~~~----~~~~~~-----------------~~~-d~-----~~k~~~k~~----lr~~lGl~~~~~~~vIlfV 474 (542)
..+|--...+ .+...+ ..+ ++ ..|...|.. ++++.|+..+++...++++
T Consensus 456 ~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~ 535 (798)
T PRK14985 456 PRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQI 535 (798)
T ss_pred cchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchhhH
Confidence 9998421111 111111 111 11 123333333 4577788878899999999
Q ss_pred ccCccccCHHH-HHHHHHhh---hcC------CcEEEEEecCchhh------HHHHHHHHHHc------CC--CEEEEcc
Q 009139 475 GRLDYQKGIDL-IRLAAPEI---LAD------DIQFVMLGSGDPQF------ESWMRDTEATY------KD--KYRGWVG 530 (542)
Q Consensus 475 GRl~~~KGid~-LieA~~~L---~~~------dv~LVIvG~G~~~~------~~~l~~la~~~------~~--~v~~~~G 530 (542)
-|+..+|...+ ++..+.++ ++. ++++|++|+..+.| .+.+...++.. .+ +|++.-.
T Consensus 536 kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlen 615 (798)
T PRK14985 536 KRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPD 615 (798)
T ss_pred hhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCC
Confidence 99999999999 66665444 321 47899999864422 23333444322 23 6877779
Q ss_pred CChhhhhhhhcC
Q 009139 531 FNVPISHRITAG 542 (542)
Q Consensus 531 y~~~l~~~~~A~ 542 (542)
|+..+++.|..|
T Consensus 616 Y~VslAe~lipa 627 (798)
T PRK14985 616 YCVSAAELLIPA 627 (798)
T ss_pred CChHHHHHHhhh
Confidence 999999988754
No 106
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.28 E-value=0.011 Score=60.42 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=74.8
Q ss_pred HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHH
Q 009139 375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKI 454 (542)
Q Consensus 375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~ 454 (542)
+.+.+=..||.+++.|....+.+.+- . ...++.+|+..++++.+
T Consensus 215 lY~~~G~~ad~vm~NssWT~nHI~qi---------W--~~~~~~iVyPPC~~e~l------------------------- 258 (465)
T KOG1387|consen 215 LYQSAGSKADIVMTNSSWTNNHIKQI---------W--QSNTCSIVYPPCSTEDL------------------------- 258 (465)
T ss_pred HHHhccccceEEEecchhhHHHHHHH---------h--hccceeEEcCCCCHHHH-------------------------
Confidence 33444457899999999888777641 1 13567778877776533
Q ss_pred HHHHHhCCCCCCCCCEEEEEccCccccCHH-HHHHHHHhhhc------CCcEEEEEecC----chhhHHHHHHHHHHcC-
Q 009139 455 ALQKELGLPIRPDCPLIGFIGRLDYQKGID-LIRLAAPEILA------DDIQFVMLGSG----DPQFESWMRDTEATYK- 522 (542)
Q Consensus 455 ~lr~~lGl~~~~~~~vIlfVGRl~~~KGid-~LieA~~~L~~------~dv~LVIvG~G----~~~~~~~l~~la~~~~- 522 (542)
.+..+- ++.+.+.++.+|.+.|+|+.. +=++|+-.... .+++|+|||+- +++....|+.+++++.
T Consensus 259 --ks~~~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i 335 (465)
T KOG1387|consen 259 --KSKFGT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKI 335 (465)
T ss_pred --HHHhcc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCC
Confidence 222222 245678999999999999999 33344433322 26899999973 3455677788888763
Q ss_pred -CCEEEE
Q 009139 523 -DKYRGW 528 (542)
Q Consensus 523 -~~v~~~ 528 (542)
.++.+.
T Consensus 336 ~~~v~F~ 342 (465)
T KOG1387|consen 336 PKHVQFE 342 (465)
T ss_pred ccceEEE
Confidence 555433
No 107
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.073 Score=54.64 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=101.1
Q ss_pred CCccEEEECCCchh--HHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhccccccccccccccc
Q 009139 289 GEKCIFLVNDWHAG--LVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHA 366 (542)
Q Consensus 289 ~~pDIIH~H~~~~~--~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~ 366 (542)
..+|+|-++++++. ++..++... .++.++|+.+||..|. . .+++.....+.+-
T Consensus 102 ~~~~~ilvQNPP~iPtliv~~~~~~------l~~~KfiIDWHNy~Ys----l----~l~~~~g~~h~lV----------- 156 (444)
T KOG2941|consen 102 RPPDIILVQNPPSIPTLIVCVLYSI------LTGAKFIIDWHNYGYS----L----QLKLKLGFQHPLV----------- 156 (444)
T ss_pred cCCcEEEEeCCCCCchHHHHHHHHH------HhcceEEEEehhhHHH----H----HHHhhcCCCCchH-----------
Confidence 47899999997653 222222222 2689999999997431 0 1111110111100
Q ss_pred ccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCC-----cCCC----cCCCCcccc
Q 009139 367 LDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGI-----DITE----WNPSSDEHI 437 (542)
Q Consensus 367 ~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGV-----D~~~----f~p~~~~~~ 437 (542)
.-....++..-+.||.-.||++.+++++.+. ||+ .+..|+|.-. +.+. |.+....+-
T Consensus 157 ---~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qn---Wgi--------~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~ 222 (444)
T KOG2941|consen 157 ---RLVRWLEKYFGKLADYNLCVTKAMREDLIQN---WGI--------NRAKVLYDRPPSKPTPLDEQHELFMKLAGDHS 222 (444)
T ss_pred ---HHHHHHHHHhhcccccchhhHHHHHHHHHHh---cCC--------ceeEEEecCCCCCCCchhHHHHHHhhhccccc
Confidence 0112245555678999999999999998763 443 1333444221 1111 222111000
Q ss_pred cccccccccchhHHHHHHHHHHhC---CCCCCCC-CEEEEEccCccccCHHHHHHHHHhh-----hc----CCcEEEEEe
Q 009139 438 ASHYSIDDLSGKVQCKIALQKELG---LPIRPDC-PLIGFIGRLDYQKGIDLIRLAAPEI-----LA----DDIQFVMLG 504 (542)
Q Consensus 438 ~~~~~~~d~~~k~~~k~~lr~~lG---l~~~~~~-~vIlfVGRl~~~KGid~LieA~~~L-----~~----~dv~LVIvG 504 (542)
.|-+...+.++..+.++-++.. ....++. .+++..-.++|...+..|++|+..- .+ +.+-++|-|
T Consensus 223 --~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITG 300 (444)
T KOG2941|consen 223 --PFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITG 300 (444)
T ss_pred --hhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcC
Confidence 0111122234444455555543 1111233 4566677899999999999999833 11 246778889
Q ss_pred cCchhhHHHHHHHHHHcC
Q 009139 505 SGDPQFESWMRDTEATYK 522 (542)
Q Consensus 505 ~G~~~~~~~l~~la~~~~ 522 (542)
.||. .+...+.++++.
T Consensus 301 KGPl--kE~Y~~~I~~~~ 316 (444)
T KOG2941|consen 301 KGPL--KEKYSQEIHEKN 316 (444)
T ss_pred CCch--hHHHHHHHHHhc
Confidence 9984 555555555543
No 108
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.00015 Score=75.57 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=93.0
Q ss_pred cEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchh
Q 009139 292 CIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGE 371 (542)
Q Consensus 292 DIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~ 371 (542)
-|.|.|+|.++....+.+++. ..+-+|+|.|..- .|.+ -..| ...+|+.+... ...+.+.....+.
T Consensus 176 vVahFHEW~AGVgL~l~R~rr------l~iaTifTTHATL-LGRy-----LCA~-~~DfYNnLd~f-~vD~EAGkr~IYH 241 (692)
T KOG3742|consen 176 VVAHFHEWQAGVGLILCRARR------LDIATIFTTHATL-LGRY-----LCAG-NVDFYNNLDSF-DVDKEAGKRQIYH 241 (692)
T ss_pred HHHHHHHHHhccchheehhcc------cceEEEeehhHHH-HHHH-----Hhcc-cchhhhchhhc-ccchhhccchhHH
Confidence 466999999876544444321 4677899999762 1111 0000 11222222110 0000011112344
Q ss_pred HHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccc--hh
Q 009139 372 AVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLS--GK 449 (542)
Q Consensus 372 ~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~--~k 449 (542)
...+++++...|+..++||+-.+-+.. .+|+..+ =.+.|||.++..|...-. |. ++. .|
T Consensus 242 rYC~ERaa~h~AhVFTTVSeITa~EAe---------HlLkRKP--D~itPNGLNV~KFsA~HE------FQ--NLHA~~K 302 (692)
T KOG3742|consen 242 RYCLERAAAHTAHVFTTVSEITALEAE---------HLLKRKP--DVITPNGLNVKKFSAVHE------FQ--NLHAQKK 302 (692)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHH---------HHHhcCC--CeeCCCCcceeehhHHHH------HH--HHHHHHH
Confidence 567899999999999999987654432 2344333 346899999988754210 00 011 12
Q ss_pred HHHHHHHHHHh-C-CCCC-CCCCEEEEEccCcc-ccCHHHHHHHHHhhh
Q 009139 450 VQCKIALQKEL-G-LPIR-PDCPLIGFIGRLDY-QKGIDLIRLAAPEIL 494 (542)
Q Consensus 450 ~~~k~~lr~~l-G-l~~~-~~~~vIlfVGRl~~-~KGid~LieA~~~L~ 494 (542)
+....-+|-.+ | +.-+ ++..++...||... .||.|.+||++++|-
T Consensus 303 ekIndFVRGHF~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN 351 (692)
T KOG3742|consen 303 EKINDFVRGHFHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLN 351 (692)
T ss_pred HHHHHHhhhhccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhH
Confidence 22223334333 1 2211 23445666799996 999999999999884
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.10 E-value=0.013 Score=68.18 Aligned_cols=179 Identities=18% Similarity=0.229 Sum_probs=110.6
Q ss_pred cEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchh
Q 009139 292 CIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGE 371 (542)
Q Consensus 292 DIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~ 371 (542)
|+|-+||+|-.++|.+++... .+.++-+.+|.. ||.. +.|..+-+
T Consensus 203 d~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHiP-----FPs~---------eifr~LP~--------------- 247 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRF------NRVKLGFFLHSP-----FPSS---------EIYKTLPI--------------- 247 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhC------CCCcEEEEecCC-----CCCh---------HHHhhCCc---------------
Confidence 899999999999999988653 578999999976 3332 22222111
Q ss_pred HHHHHHHHHHhcCceeecChhhHHHHHhhcc-CCchhhh-----hhc----CCccEEEEeCCCcCCCcCCCCcccccccc
Q 009139 372 AVNVLKGAIVTADRLLTVSKGYSWEITTVEG-GYGLHEI-----LSS----RKSVLNGITNGIDITEWNPSSDEHIASHY 441 (542)
Q Consensus 372 ~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~-g~Gl~~~-----l~~----~~~ki~vIpNGVD~~~f~p~~~~~~~~~~ 441 (542)
..-.-.++-.||.|-.-+..+++.+..... -.|++.. +.. ..-+|.+.|-|||++.|......
T Consensus 248 -r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~------ 320 (854)
T PLN02205 248 -REELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSL------ 320 (854)
T ss_pred -HHHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcC------
Confidence 011233566788888888888876654211 0111100 000 22356788889998877432110
Q ss_pred cccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC------CcEEEEEec-----Cc--h
Q 009139 442 SIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD------DIQFVMLGS-----GD--P 508 (542)
Q Consensus 442 ~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~------dv~LVIvG~-----G~--~ 508 (542)
.+ -....++++++++- +++++|+-|.|+++.||+..=+.|++++++. ++.||-+.. ++ .
T Consensus 321 ----~~-~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~ 392 (854)
T PLN02205 321 ----PE-TEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVK 392 (854)
T ss_pred ----hh-HHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHH
Confidence 00 01223457777652 2568999999999999999999999999752 567776653 11 1
Q ss_pred hhHHHHHHHHHH
Q 009139 509 QFESWMRDTEAT 520 (542)
Q Consensus 509 ~~~~~l~~la~~ 520 (542)
++..++.+++.+
T Consensus 393 ~~~~ev~~~v~r 404 (854)
T PLN02205 393 EVQAETHSTVKR 404 (854)
T ss_pred HHHHHHHHHHHH
Confidence 345555566555
No 110
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.093 Score=55.24 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=37.5
Q ss_pred CCCEEEEEccCccccCHHHHHH-HHHhhhcCCcEEEEE-ecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhcC
Q 009139 467 DCPLIGFIGRLDYQKGIDLIRL-AAPEILADDIQFVML-GSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG 542 (542)
Q Consensus 467 ~~~vIlfVGRl~~~KGid~Lie-A~~~L~~~dv~LVIv-G~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A~ 542 (542)
++++|+++|--.--+.+..++. +.+.+. ++++++.. |.+. +++....+ .++.. ....+|.+++..++.++
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~-~~~~v~~~~G~~~--~~~~~~~~-~~~~~--~~v~~f~~dm~~~~~~A 253 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLA-NRIQVIHQTGKND--LEELKSAY-NELGV--VRVLPFIDDMAALLAAA 253 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhh-hCeEEEEEcCcch--HHHHHHHH-hhcCc--EEEeeHHhhHHHHHHhc
Confidence 5778887765544333544443 333433 25666554 3332 33333333 22332 45779999999888653
No 111
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=96.95 E-value=0.015 Score=63.38 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=95.6
Q ss_pred CccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccc
Q 009139 290 EKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT 369 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~ 369 (542)
.-|+|-+||+|-.++|.+++... .+.++.+.+|.. ||.. +.|..+-+
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHiP-----FPs~---------e~fr~lP~------------- 187 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERG------PDARIGFFLHIP-----FPSS---------EIFRCLPW------------- 187 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--------SEEEEEE-S---------H---------HHHTTSTT-------------
T ss_pred CCCEEEEeCCcHHHHHHHHHhhc------CCceEeeEEecC-----CCCH---------HHHhhCCc-------------
Confidence 55999999999999999988753 578999999975 3322 12221111
Q ss_pred hhHHHHHHHHHHhcCceeecChhhHHHHHhhccC-Cchhh-----hhhc--CCccEEEEeCCCcCCCcCCCCcccccccc
Q 009139 370 GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGG-YGLHE-----ILSS--RKSVLNGITNGIDITEWNPSSDEHIASHY 441 (542)
Q Consensus 370 ~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g-~Gl~~-----~l~~--~~~ki~vIpNGVD~~~f~p~~~~~~~~~~ 441 (542)
..-+-.++-.||.|-.-+..+++.+...... .|++. .+.. ..-++.+.|-|||++.|......
T Consensus 188 ---r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~------ 258 (474)
T PF00982_consen 188 ---REEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARS------ 258 (474)
T ss_dssp ---HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-------
T ss_pred ---HHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccC------
Confidence 0112335677999988888888777542110 01100 0000 12246778888888766321100
Q ss_pred cccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc------CCcEEEEEec----Cch---
Q 009139 442 SIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA------DDIQFVMLGS----GDP--- 508 (542)
Q Consensus 442 ~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~------~dv~LVIvG~----G~~--- 508 (542)
.+. .+..+.++++++- +.++|+-|.|+++.||+..=++|++++++ .++.|+-++. ..+
T Consensus 259 --~~v---~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~ 329 (474)
T PF00982_consen 259 --PEV---QERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQ 329 (474)
T ss_dssp --S------HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHH
T ss_pred --hHH---HHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHH
Confidence 000 1223567777641 35899999999999999999999999975 2577876664 122
Q ss_pred hhHHHHHHHHHH
Q 009139 509 QFESWMRDTEAT 520 (542)
Q Consensus 509 ~~~~~l~~la~~ 520 (542)
.+.+++.+++.+
T Consensus 330 ~~~~~v~~~v~~ 341 (474)
T PF00982_consen 330 ELRREVEELVGR 341 (474)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345666666554
No 112
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.031 Score=60.54 Aligned_cols=166 Identities=24% Similarity=0.339 Sum_probs=102.5
Q ss_pred CccEEEECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccc
Q 009139 290 EKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT 369 (542)
Q Consensus 290 ~pDIIH~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~ 369 (542)
+=|+|-+||+|-.++|.+++.+. .+.++.+.+|-. ||.. +.|..+-+ +
T Consensus 147 ~gDiIWVhDYhL~L~P~mlR~~~------~~~~IgfFlHiP-----fPss---------Evfr~lP~----r-------- 194 (486)
T COG0380 147 PGDIIWVHDYHLLLVPQMLRERI------PDAKIGFFLHIP-----FPSS---------EVFRCLPW----R-------- 194 (486)
T ss_pred CCCEEEEEechhhhhHHHHHHhC------CCceEEEEEeCC-----CCCH---------HHHhhCch----H--------
Confidence 33999999999999999998754 467899999976 3322 22221111 0
Q ss_pred hhHHHHHHHHHHhcCceeecChhhHHHHHhhcc---C----Cchhhh-hhcCCccEEEEeCCCcCCCcCCCCcccccccc
Q 009139 370 GEAVNVLKGAIVTADRLLTVSKGYSWEITTVEG---G----YGLHEI-LSSRKSVLNGITNGIDITEWNPSSDEHIASHY 441 (542)
Q Consensus 370 ~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~---g----~Gl~~~-l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~ 441 (542)
.-...++-.||.|-.-++.+++.+..... + .+...- ..-...++..+|-|||+..|........
T Consensus 195 ----~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~---- 266 (486)
T COG0380 195 ----EEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPS---- 266 (486)
T ss_pred ----HHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCc----
Confidence 01122456688887777777766543210 0 000000 0001246778899999887754321100
Q ss_pred cccccchhHHHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC------CcEEEEEecC
Q 009139 442 SIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD------DIQFVMLGSG 506 (542)
Q Consensus 442 ~~~d~~~k~~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~------dv~LVIvG~G 506 (542)
.. ....++++.++= ++++|+-+-|+++-||+..=+.|+++++.. ++.|+-+...
T Consensus 267 ------v~-~~~~el~~~~~~----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~p 326 (486)
T COG0380 267 ------VQ-EKVLELKAELGR----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPP 326 (486)
T ss_pred ------hh-hHHHHHHHHhcC----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCC
Confidence 00 122455566542 478999999999999999999999999852 6777777753
No 113
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.93 E-value=0.012 Score=55.14 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCc
Q 009139 377 KGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEW 429 (542)
Q Consensus 377 k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f 429 (542)
...+..||..++++..-++..=. .-..||.||+-|||++.+
T Consensus 130 l~~l~~~D~~isPT~wQ~~~fP~------------~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 130 LLALEQADAGISPTRWQRSQFPA------------EFRSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHhCCcCcCCCHHHHHhCCH------------HHHcCcEEeecccchhhc
Confidence 34677899999999876554321 125799999999999765
No 114
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=96.70 E-value=0.019 Score=64.66 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccc----ccccc-----
Q 009139 372 AVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHI----ASHYS----- 442 (542)
Q Consensus 372 ~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~----~~~~~----- 442 (542)
.++|...+++.+..|-.||+-..+-+.+..+ .......++|+.-|.|||...+|--...+.+ ...++
T Consensus 321 ~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f----~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~ 396 (713)
T PF00343_consen 321 RFRMANLALRGSHSVNGVSKLHGEVLKQMVF----KDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRT 396 (713)
T ss_dssp EEEHHHHHHHCESEEEESSHHHHHHHHHTTT----HHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGC
T ss_pred hcchhHHHHHhcccccchHHHHHHHHHHHHh----hhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhcccccc
Confidence 4667788999999999999977665543211 1222345789999999999999954322211 11111
Q ss_pred -c----------ccc-------chhHHHH----HHHHHHhCCCCCCCCCEEEEEccCccccCHHHH----HHHHHhhhc-
Q 009139 443 -I----------DDL-------SGKVQCK----IALQKELGLPIRPDCPLIGFIGRLDYQKGIDLI----RLAAPEILA- 495 (542)
Q Consensus 443 -~----------~d~-------~~k~~~k----~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~L----ieA~~~L~~- 495 (542)
+ +|. ..|...| +.++++.|+..+++...++++-|+.++|...+. ++-..+|++
T Consensus 397 d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~ 476 (713)
T PF00343_consen 397 DLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNN 476 (713)
T ss_dssp SGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhc
Confidence 0 110 0122223 234566687667788899999999999999884 344455553
Q ss_pred -----CCcEEEEEecCchhh------HHHHHHHHHH------cCC--CEEEEccCChhhhhhhhcC
Q 009139 496 -----DDIQFVMLGSGDPQF------ESWMRDTEAT------YKD--KYRGWVGFNVPISHRITAG 542 (542)
Q Consensus 496 -----~dv~LVIvG~G~~~~------~~~l~~la~~------~~~--~v~~~~Gy~~~l~~~~~A~ 542 (542)
.++++|++|+..|.+ .+.+.+.++. ..+ +|++.-.|+..++++|..|
T Consensus 477 p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg 542 (713)
T PF00343_consen 477 PNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPG 542 (713)
T ss_dssp TTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG
T ss_pred ccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhh
Confidence 258999999865423 2233333331 123 6776669999999998765
No 115
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.59 E-value=0.0029 Score=56.06 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=45.6
Q ss_pred CCEEEEEccCccccCHHHHHH-HHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 468 CPLIGFIGRLDYQKGIDLIRL-AAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 468 ~~vIlfVGRl~~~KGid~Lie-A~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
.++|++.|++.+.||++.+++ |++++.+ ++++|+|+|.+++ +++++ .. .++ .+.|+.+++..++.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~----~l~~~--~~-~~v-~~~g~~~e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD----ELKRL--RR-PNV-RFHGFVEELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-----HHCCH--HH-CTE-EEE-S-HHHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH----HHHHh--cC-CCE-EEcCCHHHHHHHHHh
Confidence 368999999999999999999 9999875 4899999999874 25554 22 366 478887777766543
No 116
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.45 E-value=0.028 Score=55.79 Aligned_cols=119 Identities=25% Similarity=0.434 Sum_probs=78.3
Q ss_pred hcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhC
Q 009139 382 TADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELG 461 (542)
Q Consensus 382 ~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lG 461 (542)
.++.+++.+......+... ....++.+++|+++.+.+.+.. ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--------------------------~~ 192 (381)
T COG0438 150 LADRVIAVSPALKELLEAL-----------GVPNKIVVIPNGIDTEKFAPAR--------------------------IG 192 (381)
T ss_pred cccEEEECCHHHHHHHHHh-----------CCCCCceEecCCcCHHHcCccc--------------------------cC
Confidence 3677888888764433321 1233788999999988776520 11
Q ss_pred CCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHHHcC--CCEEEEccCCh--hh
Q 009139 462 LPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEATYK--DKYRGWVGFNV--PI 535 (542)
Q Consensus 462 l~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~~~~--~~v~~~~Gy~~--~l 535 (542)
+..+.....++++||+.+.||++.+++++..+... ++.++++|.++.. .+.+..+..++. .++ .+.|+.. ++
T Consensus 193 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v-~~~g~~~~~~~ 270 (381)
T COG0438 193 LLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER-REELEKLAKKLGLEDNV-KFLGYVPDEEL 270 (381)
T ss_pred CCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc-HHHHHHHHHHhCCCCcE-EEecccCHHHH
Confidence 11111136999999999999999999999998763 3899999998752 344444555553 344 5688744 44
Q ss_pred hhhh
Q 009139 536 SHRI 539 (542)
Q Consensus 536 ~~~~ 539 (542)
..++
T Consensus 271 ~~~~ 274 (381)
T COG0438 271 AELL 274 (381)
T ss_pred HHHH
Confidence 4433
No 117
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=95.76 E-value=0.38 Score=50.18 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=29.5
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYF 196 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~ 196 (542)
|||++=... +| --.....+.+.|.++||+|.|.+..+.
T Consensus 1 MkIwiDi~~-p~------hvhfFk~~I~eL~~~GheV~it~R~~~ 38 (335)
T PF04007_consen 1 MKIWIDITH-PA------HVHFFKNIIRELEKRGHEVLITARDKD 38 (335)
T ss_pred CeEEEECCC-ch------HHHHHHHHHHHHHhCCCEEEEEEeccc
Confidence 888885543 23 234678999999999999999998764
No 118
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=95.56 E-value=0.27 Score=49.72 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=35.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|+|++|+...+||+ .||+..-+.+|.+.|-+.-..|..|+++
T Consensus 1 ~~V~ll~EGtYPyv-~GGVSsW~~~LI~glpe~~F~v~~i~a~ 42 (268)
T PF11997_consen 1 MDVCLLTEGTYPYV-RGGVSSWVHQLIRGLPEHEFHVYAIGAN 42 (268)
T ss_pred CeEEEEecCcCCCC-CCchhHHHHHHHhcCCCceEEEEEEeCC
Confidence 89999999999996 7999999999999998765666666655
No 119
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=94.36 E-value=5.7 Score=40.22 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=50.2
Q ss_pred CCEEEEEccCccccCHHHHHHHHHhhhcCCcE-EEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139 468 CPLIGFIGRLDYQKGIDLIRLAAPEILADDIQ-FVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA 541 (542)
Q Consensus 468 ~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~-LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A 541 (542)
..++++.|-..+.+....+++++..+. .+++ .+|+|.+.+ ..+++++..+.++ ++. +.+|.++++.++.+
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~-~~~~l~~~~~~~~-~i~-~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNP-NLDELKKFAKEYP-NII-LFIDVENMAELMNE 241 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCc-CHHHHHHHHHhCC-CEE-EEeCHHHHHHHHHH
Confidence 457889999888887788889888753 3333 347787754 3467777776654 664 77999999888754
No 120
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=93.94 E-value=1.2 Score=45.35 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=27.1
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||++.... ..-|=...+..|+++| +||+|++++..
T Consensus 1 MkIl~~v~~-----~G~GH~~R~~~la~~L--rg~~v~~~~~~ 36 (318)
T PF13528_consen 1 MKILFYVQG-----HGLGHASRCLALARAL--RGHEVTFITSG 36 (318)
T ss_pred CEEEEEeCC-----CCcCHHHHHHHHHHHH--ccCceEEEEcC
Confidence 899998864 1244455667788899 59999999965
No 121
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.90 E-value=0.33 Score=53.72 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=42.0
Q ss_pred CCEEEEEc--cCccccCHHHHHHHHHhhhc--CCcEEEEEecCch-hhHHHHHHHHHHc
Q 009139 468 CPLIGFIG--RLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDP-QFESWMRDTEATY 521 (542)
Q Consensus 468 ~~vIlfVG--Rl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~-~~~~~l~~la~~~ 521 (542)
...+++++ || ++|-++.+|+|+.++.. ++++|.+.|.|.+ .+.+.++++++++
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~ 376 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQI 376 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHH
Confidence 34677888 99 99999999999999965 5899999998863 4566776665544
No 122
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=93.50 E-value=0.36 Score=39.94 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=25.4
Q ss_pred CCCccEEEECCCchhHHHH-HHHHhcCCCCCCCCCcEEEEecCC
Q 009139 288 YGEKCIFLVNDWHAGLVPV-LLASKYRPHGVYKDARSILVIHNL 330 (542)
Q Consensus 288 ~~~pDIIH~H~~~~~~~~~-~l~~~~~~~~~~~~ipvV~TiH~~ 330 (542)
+++.||||.|...+.+..- ++.+. ..+.++|+|-|++
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~hA~------~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILHAR------TMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHHHH------hCCCcEEeecccc
Confidence 3589999999865544332 22222 2589999999986
No 123
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=87.46 E-value=27 Score=36.81 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=24.1
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHH-CCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAA-RGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~-~GheV~Vitp~ 194 (542)
|||++|+..=+-| + -+.-+.++|.+ .+.++.+|...
T Consensus 1 ~ki~~v~GtRpe~---i----klapv~~~l~~~~~~~~~lv~tG 37 (365)
T TIGR03568 1 KKICVVTGTRADY---G----LLRPLLKALQDDPDLELQLIVTG 37 (365)
T ss_pred CeEEEEEecChhH---H----HHHHHHHHHhcCCCCcEEEEEeC
Confidence 6899888542221 2 46677778887 47888888743
No 124
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=85.99 E-value=9.7 Score=39.92 Aligned_cols=169 Identities=15% Similarity=0.104 Sum_probs=81.3
Q ss_pred CCccEEEECC-CchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccc
Q 009139 289 GEKCIFLVND-WHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHAL 367 (542)
Q Consensus 289 ~~pDIIH~H~-~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~ 367 (542)
.+||+|-+|. ....+.+++++.. .++| |.++|+--..+-. ..|.+.+..+
T Consensus 66 ~~Pd~Vlv~GD~~~~la~alaA~~-------~~ip-v~HieaGlRs~d~------~~g~~de~~R--------------- 116 (346)
T PF02350_consen 66 EKPDAVLVLGDRNEALAAALAAFY-------LNIP-VAHIEAGLRSGDR------TEGMPDEINR--------------- 116 (346)
T ss_dssp HT-SEEEEETTSHHHHHHHHHHHH-------TT-E-EEEES-----S-T------TSSTTHHHHH---------------
T ss_pred cCCCEEEEEcCCchHHHHHHHHHH-------hCCC-EEEecCCCCcccc------CCCCchhhhh---------------
Confidence 4899999985 4555666665553 5899 5555643100000 0122222211
Q ss_pred cchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeC-CCcCCCcCCCCccccccccccccc
Q 009139 368 DTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITN-GIDITEWNPSSDEHIASHYSIDDL 446 (542)
Q Consensus 368 ~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpN-GVD~~~f~p~~~~~~~~~~~~~d~ 446 (542)
+..-+.|+.-.+.++..++.+.+. | .++++|.++-| ++|.-..
T Consensus 117 ---------~~i~~la~lhf~~t~~~~~~L~~~----G------~~~~rI~~vG~~~~D~l~~----------------- 160 (346)
T PF02350_consen 117 ---------HAIDKLAHLHFAPTEEARERLLQE----G------EPPERIFVVGNPGIDALLQ----------------- 160 (346)
T ss_dssp ---------HHHHHH-SEEEESSHHHHHHHHHT----T--------GGGEEE---HHHHHHHH-----------------
T ss_pred ---------hhhhhhhhhhccCCHHHHHHHHhc----C------CCCCeEEEEChHHHHHHHH-----------------
Confidence 223456888899999999888752 2 35788888866 3442111
Q ss_pred chhHHHHHHHHHH---hCCCCCCCCCEEEEEc-cCc--c-ccCHHHHHHHHHhhhcC-CcEEEEEecCchhhHHHHHHHH
Q 009139 447 SGKVQCKIALQKE---LGLPIRPDCPLIGFIG-RLD--Y-QKGIDLIRLAAPEILAD-DIQFVMLGSGDPQFESWMRDTE 518 (542)
Q Consensus 447 ~~k~~~k~~lr~~---lGl~~~~~~~vIlfVG-Rl~--~-~KGid~LieA~~~L~~~-dv~LVIvG~G~~~~~~~l~~la 518 (542)
.+....+. .++.....++++++.. |.+ . ......+.++++.|.+. ++++|+.....+...+.+.+..
T Consensus 161 -----~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l 235 (346)
T PF02350_consen 161 -----NKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKL 235 (346)
T ss_dssp -----HHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHH
T ss_pred -----hHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHh
Confidence 11111100 1110012445555543 222 2 35567888888887764 8888888765455566666666
Q ss_pred HHcCCCEEEE
Q 009139 519 ATYKDKYRGW 528 (542)
Q Consensus 519 ~~~~~~v~~~ 528 (542)
.++ .+++++
T Consensus 236 ~~~-~~v~~~ 244 (346)
T PF02350_consen 236 KKY-DNVRLI 244 (346)
T ss_dssp TT--TTEEEE
T ss_pred ccc-CCEEEE
Confidence 666 467544
No 125
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=82.35 E-value=1.9 Score=41.55 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=28.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYF 196 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~ 196 (542)
||||+...+ |=-+.-+..|.++|.+.||+|+|++|...
T Consensus 1 M~ILlTNDD-------Gi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDD-------GIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCC-------CCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 899988765 22334588999999888899999999853
No 126
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=81.28 E-value=8.5 Score=41.76 Aligned_cols=106 Identities=10% Similarity=0.032 Sum_probs=70.1
Q ss_pred HhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHh
Q 009139 381 VTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKEL 460 (542)
Q Consensus 381 ~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~l 460 (542)
...|.||+.++.-.+++.... .+..++.+||-|+-.. + +...
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~----------~~~~~~~~ip~g~i~~-~-~~~~-------------------------- 279 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELL----------DNEYQEQISQLGYLYP-F-KKDN-------------------------- 279 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHh----------CcccCceEEEEEEEEe-e-cccc--------------------------
Confidence 457889988877666665421 1245677777776421 1 1100
Q ss_pred CCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCCh-hhhh
Q 009139 461 GLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNV-PISH 537 (542)
Q Consensus 461 Gl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~-~l~~ 537 (542)
....-++.++ + +.+|++++.|.+ ++++|-| |.+.+ ....|+++ +++ .+++.+.||.. ++..
T Consensus 280 -----r~~~~~l~~t---~----s~~I~~i~~Lv~~lPd~~f~I-ga~te-~s~kL~~L-~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 280 -----KYRKQALILT---N----SDQIEHLEEIVQALPDYHFHI-AALTE-MSSKLMSL-DKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred -----CCcccEEEEC---C----HHHHHHHHHHHHhCCCcEEEE-EecCc-ccHHHHHH-Hhc-CCcEEECCcChHHHHH
Confidence 1223444555 1 899999999976 5999999 87764 35788888 777 57888999977 7776
Q ss_pred hhh
Q 009139 538 RIT 540 (542)
Q Consensus 538 ~~~ 540 (542)
++.
T Consensus 344 ly~ 346 (438)
T TIGR02919 344 LYQ 346 (438)
T ss_pred HHH
Confidence 653
No 127
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=79.02 E-value=3.2 Score=36.59 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=25.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||+++.. |.....--......|..+.+++||+|.++.+.
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 89999986 32222223346778889999999999999876
No 128
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=77.49 E-value=3.3 Score=43.73 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=28.8
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||++++. | ..|=+. -+..|+++|+++||+|+++++.
T Consensus 1 mrIl~~~~---p--~~GHv~-P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 1 MRVLITTI---G--SRGDVQ-PLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred CeEEEEeC---C--CcchHH-HHHHHHHHHHHCCCeEEEeeCH
Confidence 89999885 3 123333 4568999999999999999975
No 129
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=73.09 E-value=22 Score=36.54 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.2
Q ss_pred CC-hHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 167 TG-GLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 167 ~G-Gl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.| |=-.....++++|.+ ||+|.+++..
T Consensus 9 ~G~GH~~r~~ala~~L~~-g~ev~~~~~~ 36 (321)
T TIGR00661 9 EGFGHTTRSVAIGEALKN-DYEVSYIASG 36 (321)
T ss_pred cCccHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence 47 878888999999999 9999999744
No 130
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=72.80 E-value=5.7 Score=35.04 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=20.5
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|==.=...|+++|+++||+|.+.++.
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 444444568999999999999998865
No 131
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=69.09 E-value=6.6 Score=43.46 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=29.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
-||+.+.+.+ .+-=-..+..++++|+++||+|+|++|.
T Consensus 21 ~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 21 ARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred ccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3687775431 2444567899999999999999999885
No 132
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=68.54 E-value=8.1 Score=36.77 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=26.2
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||++|+.. |=++ ..+.++..+|||+|+-|+.+
T Consensus 1 mKIaiIgAs-------G~~G---s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGAS-------GKAG---SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecC-------chhH---HHHHHHHHhCCCeeEEEEeC
Confidence 899999863 4444 56778888999999999965
No 133
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=64.74 E-value=14 Score=32.98 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=30.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCe-EEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHR-VMVVS 192 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~Ghe-V~Vit 192 (542)
|||+++... .||. +-..+...++++++.+.||+ |.|+-
T Consensus 1 m~~~iv~~~-~Py~--~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVTG-PAYG--TQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEcC-CCCC--CHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 899988764 6753 66778899999999999999 47775
No 134
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=64.13 E-value=16 Score=31.18 Aligned_cols=32 Identities=6% Similarity=0.254 Sum_probs=24.7
Q ss_pred CCcEEEEEecCchhhHHHHHHHHHHcCCCEEE
Q 009139 496 DDIQFVMLGSGDPQFESWMRDTEATYKDKYRG 527 (542)
Q Consensus 496 ~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~ 527 (542)
++.+||++||..+...+...++++++|+++..
T Consensus 63 P~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~a 94 (100)
T PF09949_consen 63 PERKFILIGDSGQHDPEIYAEIARRFPGRILA 94 (100)
T ss_pred CCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEE
Confidence 36789999985443467778899999998864
No 135
>PLN00016 RNA-binding protein; Provisional
Probab=63.42 E-value=7.7 Score=40.92 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
..+|||+++... .||.+..=..|++.|.++||+|++++..
T Consensus 50 ~~~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 50 VEKKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cccceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 345788877542 4777777788999999999999999854
No 136
>PRK06756 flavodoxin; Provisional
Probab=61.76 E-value=15 Score=33.23 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=31.9
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
+|||+++... ..|-.+.++..++++|.+.|++|.++-.
T Consensus 1 mmkv~IiY~S-----~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFAS-----MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEEC-----CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 4788888643 4799999999999999999999987754
No 137
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=60.71 E-value=2.3e+02 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=23.9
Q ss_pred CCCEEE-EEccC-c-cccCHHHHHHHHHhhhc-CCcEEEEE
Q 009139 467 DCPLIG-FIGRL-D-YQKGIDLIRLAAPEILA-DDIQFVML 503 (542)
Q Consensus 467 ~~~vIl-fVGRl-~-~~KGid~LieA~~~L~~-~dv~LVIv 503 (542)
+.++|+ +.|-- . -.+.+..++++++.|.+ .++++++.
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~ 244 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAA 244 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEE
Confidence 445444 44433 2 25678899999999864 36777664
No 138
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.73 E-value=59 Score=30.34 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=36.6
Q ss_pred EEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEcc
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVG 530 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~G 530 (542)
.+|...+.-..+..-+.+..+.+.+..+|++|-|.+.-+..+.+....++..+.+-+|
T Consensus 77 ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 77 IVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVG 134 (172)
T ss_pred EEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
Confidence 4454444334333334444444457789999999877778888888888766554444
No 139
>PRK09271 flavodoxin; Provisional
Probab=58.40 E-value=18 Score=33.35 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=30.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
|||+++... ..|-.+.++..+++.|.+.|++|.+.-
T Consensus 1 mkv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYAS-----LSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEc-----CCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 788888653 579999999999999999999988764
No 140
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.26 E-value=57 Score=30.42 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=36.3
Q ss_pred EEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEcc
Q 009139 473 FIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVG 530 (542)
Q Consensus 473 fVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~G 530 (542)
.+|...+.-+.+..-+.++.+.+.+..+|++|-|.+.-|..+.+..+..+..+.+-+|
T Consensus 75 i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~vG 132 (171)
T cd06533 75 IVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKDRLPVPVAIGVG 132 (171)
T ss_pred EEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEec
Confidence 4454454444444444555555457889999999876677777777777655544333
No 141
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=56.66 E-value=26 Score=31.46 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=31.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||++|....- ..|-....+..+++.+.+.|++|.++-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999986522 34778888888888898899999999765
No 142
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.07 E-value=61 Score=32.24 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEE-EccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEc
Q 009139 451 QCKIALQKELGLPIRPDCPLIGF-IGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWV 529 (542)
Q Consensus 451 ~~k~~lr~~lGl~~~~~~~vIlf-VGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~ 529 (542)
...+.+++++|+. ++++ .|=+. .+.--+.++.+.+.+..+|+||-|.+.-|.++.+....++..+.+-+
T Consensus 120 ~a~~~l~~~y~l~------i~g~~~Gyf~----~~e~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gv 189 (243)
T PRK03692 120 QTEAKLRTQWNVN------IVGSQDGYFT----PEQRQALFERIHASGAKIVTVAMGSPKQEIFMRDCRLVYPDALYMGV 189 (243)
T ss_pred HHHHHHHHHhCCE------EEEEeCCCCC----HHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHhCCCCEEEEe
Confidence 4556677777652 3332 34443 32322334444445788999999987667777777777665554333
Q ss_pred c
Q 009139 530 G 530 (542)
Q Consensus 530 G 530 (542)
|
T Consensus 190 G 190 (243)
T PRK03692 190 G 190 (243)
T ss_pred C
Confidence 3
No 143
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=55.38 E-value=19 Score=33.43 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=32.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
||+|++.+. +.|-.......++..|.++|++|.+.-.
T Consensus 1 Mk~LIlYst-----r~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYST-----RDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEec-----CCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 788887653 5799999999999999999999999853
No 144
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.64 E-value=2.7e+02 Score=28.94 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=28.2
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFN 197 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~ 197 (542)
|||++=... +|. ..+..++...|.++||+|.+-|..+..
T Consensus 1 mkVwiDI~n-~~h------vhfFk~lI~elekkG~ev~iT~rd~~~ 39 (346)
T COG1817 1 MKVWIDIGN-PPH------VHFFKNLIWELEKKGHEVLITCRDFGV 39 (346)
T ss_pred CeEEEEcCC-cch------hhHHHHHHHHHHhCCeEEEEEEeecCc
Confidence 677764432 232 246789999999999999999987643
No 145
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=54.20 E-value=1.9e+02 Score=30.80 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCCCCCCCEEEEEc-cCcc-ccCHHHHHHHHHhhhc--CCcEEEEEecC
Q 009139 452 CKIALQKELGLPIRPDCPLIGFIG-RLDY-QKGIDLIRLAAPEILA--DDIQFVMLGSG 506 (542)
Q Consensus 452 ~k~~lr~~lGl~~~~~~~vIlfVG-Rl~~-~KGid~LieA~~~L~~--~dv~LVIvG~G 506 (542)
.|+.+|+++|++. +.+.+.+..| |-++ ..-...+.+|+..+.+ ++.++++-=.-
T Consensus 174 ~r~~ar~~l~~~~-~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~ 231 (381)
T COG0763 174 DREAAREKLGIDA-DEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVN 231 (381)
T ss_pred cHHHHHHHhCCCC-CCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence 3667999999974 2333444555 5555 5557888899988874 48888886443
No 146
>PRK10037 cell division protein; Provisional
Probab=53.56 E-value=17 Score=35.96 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=27.3
Q ss_pred eEEEEEecccCCCcCCChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
|||+-|.. .-||+|.. +.+|+.+|+++|++|.+|=
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 66655554 24888865 5889999999999999994
No 147
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=52.87 E-value=1.1e+02 Score=28.26 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=16.1
Q ss_pred hcCceeecChhhHHHHHh
Q 009139 382 TADRLLTVSKGYSWEITT 399 (542)
Q Consensus 382 ~ad~Vi~vS~~~~~~l~~ 399 (542)
.+|..++.|+..++++.+
T Consensus 137 ~~D~y~Vase~~~~~l~~ 154 (169)
T PF06925_consen 137 GVDRYFVASEEVKEELIE 154 (169)
T ss_pred CCCEEEECCHHHHHHHHH
Confidence 489999999999999886
No 148
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=52.53 E-value=20 Score=34.81 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=24.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|||++| ||.+.+-..|+..|++.||+|+++..
T Consensus 1 MkI~II----------GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVL----------GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 677765 55555667889999999999998754
No 149
>CHL00175 minD septum-site determining protein; Validated
Probab=52.13 E-value=25 Score=35.30 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=29.1
Q ss_pred CCceEEEEEecccCCCcCCChHh--HHHhHHHHHHHHCCCeEEEEEe
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLG--DVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~--~~v~~La~~L~~~GheV~Vitp 193 (542)
++++||+.|+.. .||+| +.+.+|+.+|+++|.+|.+|=.
T Consensus 12 ~~~~~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~vlliD~ 52 (281)
T CHL00175 12 ATMSRIIVITSG------KGGVGKTTTTANLGMSIARLGYRVALIDA 52 (281)
T ss_pred CCCceEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 445677777652 36666 5578999999999999999843
No 150
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=51.78 E-value=18 Score=36.93 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=27.4
Q ss_pred eEEEEEecccCCCcCCChHhH--HHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGD--VCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~--~v~~La~~L~~~GheV~Vitp 193 (542)
|||++.. -||+|. .+.+|+.+|+++|++|.+|=.
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7877654 388875 578999999999999999954
No 151
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=51.72 E-value=21 Score=32.40 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=31.4
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
+|||++|... ..|..+.++..++..|.+.|++|.+..
T Consensus 1 M~ki~Ivy~S-----~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 1 MMKILIVYGS-----RTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CCeEEEEEEc-----CCCcHHHHHHHHHHHhccCCceEEEee
Confidence 5899998753 579999999999999999999995543
No 152
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=50.96 E-value=3.5e+02 Score=29.18 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCC-CcCCCcCCCCcccccccccccccchhHHH
Q 009139 374 NVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNG-IDITEWNPSSDEHIASHYSIDDLSGKVQC 452 (542)
Q Consensus 374 ~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNG-VD~~~f~p~~~~~~~~~~~~~d~~~k~~~ 452 (542)
.+.+..++..|.|++-|+..++.+..- | . .++.+.-|= .|.+ |... -...
T Consensus 169 ~~~~~~~~~i~li~aQse~D~~Rf~~L----G------a--~~v~v~GNlKfd~~---~~~~--------------~~~~ 219 (419)
T COG1519 169 FLARLLFKNIDLILAQSEEDAQRFRSL----G------A--KPVVVTGNLKFDIE---PPPQ--------------LAAE 219 (419)
T ss_pred HHHHHHHHhcceeeecCHHHHHHHHhc----C------C--cceEEecceeecCC---CChh--------------hHHH
Confidence 356677889999999999998888752 2 1 224444331 1211 1110 1234
Q ss_pred HHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcC--CcEEEEEecCchhhHHHHHHHHHHcC
Q 009139 453 KIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILAD--DIQFVMLGSGDPQFESWMRDTEATYK 522 (542)
Q Consensus 453 k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~--dv~LVIvG~G~~~~~~~l~~la~~~~ 522 (542)
...+|++++. .++++++.+. ...--+.+++++.++++. |+.+++|= -.++--+.+.+++++.+
T Consensus 220 ~~~~r~~l~~----~r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVP-RHpERf~~v~~l~~~~g 284 (419)
T COG1519 220 LAALRRQLGG----HRPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVP-RHPERFKAVENLLKRKG 284 (419)
T ss_pred HHHHHHhcCC----CCceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEec-CChhhHHHHHHHHHHcC
Confidence 5677888764 2688888887 333345688999988863 78777774 33334566677776654
No 153
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=49.92 E-value=18 Score=38.88 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=29.1
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|||+++.. | . =|--.-+..|+++|.++||+|+.+|..
T Consensus 1 ~mkil~~~~---~--~-~Ghv~p~~aL~~eL~~~gheV~~~~~~ 38 (406)
T COG1819 1 RMKILFVVC---G--A-YGHVNPCLALGKELRRRGHEVVFASTG 38 (406)
T ss_pred CceEEEEec---c--c-cccccchHHHHHHHHhcCCeEEEEeCH
Confidence 589999874 2 1 333345678999999999999999954
No 154
>PRK06703 flavodoxin; Provisional
Probab=49.05 E-value=30 Score=31.23 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=31.4
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
+|||+++... ..|-.+.++..+++.|.+.|++|.++-.
T Consensus 1 mmkv~IiY~S-----~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 1 MAKILIAYAS-----MSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CCeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 4787777642 4699999999999999999999998754
No 155
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=48.70 E-value=23 Score=36.45 Aligned_cols=36 Identities=39% Similarity=0.674 Sum_probs=27.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhH--HHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGS--LPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~--La~~L~~~GheV~Vitp~ 194 (542)
|||++++- -||+|..+.. +|-+++++|++|.+++.+
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~D 38 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTD 38 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESS
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecC
Confidence 78999884 4999887777 777788999999999865
No 156
>PLN02572 UDP-sulfoquinovose synthase
Probab=47.67 E-value=39 Score=36.61 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=25.7
Q ss_pred cccCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 145 KAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 145 ~~~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
.+.....|||++. ||.+-.=..|++.|.++|++|+++.
T Consensus 41 ~~~~~~~k~VLVT----------GatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 41 SSSSSKKKKVMVI----------GGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCccccCCEEEEE----------CCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 3344455777653 3444444778899999999999874
No 157
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=47.46 E-value=31 Score=32.08 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=34.0
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
+|+|+-|+.. +..|=.+.+..|.+.|.++|+.|.+|-...
T Consensus 1 m~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 5888888853 568899999999999999999999997543
No 158
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=46.37 E-value=33 Score=35.26 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=26.2
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
..|||+++.. |++|.+ ++..|++.||+|++++..
T Consensus 4 ~~m~I~IiG~--------GaiG~~---lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGT--------GAIGGF---YGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECC--------CHHHHH---HHHHHHHCCCeEEEEEeC
Confidence 4589999863 777754 566788899999999864
No 159
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=46.35 E-value=25 Score=35.06 Aligned_cols=33 Identities=30% Similarity=0.557 Sum_probs=26.2
Q ss_pred eEEEEEecccCCCcCCChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
|+|++. . -||+|.. +.+||.+|+++|++|.||=
T Consensus 1 ~~i~~~-g-------KGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVY-G-------KGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEE-c-------CCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 667765 2 2888754 6899999999999999994
No 160
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=46.31 E-value=39 Score=29.80 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=25.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||++.... .++.. .+.++.+.|.+.|++|.|+...
T Consensus 1 k~i~l~vtG------s~~~~-~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG------SIAAY-KAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S------SGGGG-GHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC------HHHHH-HHHHHHHHHhhCCCEEEEEECC
Confidence 688887652 23333 3889999999999999999754
No 161
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=45.25 E-value=28 Score=35.00 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=28.1
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
..||||+...+-. -+.-+..|.++|.+.| +|+|++|..
T Consensus 4 ~~M~ILltNDDGi-------~a~Gi~aL~~~l~~~g-~V~VvAP~~ 41 (257)
T PRK13932 4 KKPHILVCNDDGI-------EGEGIHVLAASMKKIG-RVTVVAPAE 41 (257)
T ss_pred CCCEEEEECCCCC-------CCHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 4589998776522 2224788889998888 899999974
No 162
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=45.16 E-value=23 Score=36.46 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=31.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
|||+++.. |.....--......|..+.+++||+|.++.|..
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 89999885 332233334467889999999999999999873
No 163
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=44.42 E-value=35 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=29.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVV 191 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vi 191 (542)
|||+++... ..|-.+.++..+++.|.+.|++|.++
T Consensus 1 M~i~IiY~S-----~tGnTe~iA~~ia~~l~~~g~~v~~~ 35 (140)
T TIGR01754 1 MRILLAYLS-----LSGNTEEVAFMIQDYLQKDGHEVDIL 35 (140)
T ss_pred CeEEEEEEC-----CCChHHHHHHHHHHHHhhCCeeEEec
Confidence 788877643 57999999999999999999998743
No 164
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=43.92 E-value=29 Score=34.60 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=27.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
||||+.-.+ |=.+..+..|.++|.+.| +|+|++|..
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~ 36 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPAR 36 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCC
Confidence 899976654 222335788999999988 999999974
No 165
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=42.88 E-value=70 Score=30.17 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCC
Q 009139 482 GIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKD 523 (542)
Q Consensus 482 Gid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~ 523 (542)
|.|++.+.++...+++.++.++|..++..++..+.+.+++|+
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~ 74 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPK 74 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCC
Confidence 666666666655444566666666655445555555556653
No 166
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=42.06 E-value=32 Score=37.24 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=29.6
Q ss_pred cCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 147 QTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 147 ~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
..+++|||++. ||.|-.=.+|++.|.++|++|+++..
T Consensus 116 ~~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 116 IGRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred cccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 34677998863 66777778999999999999998864
No 167
>PLN02778 3,5-epimerase/4-reductase
Probab=41.96 E-value=36 Score=34.64 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=27.1
Q ss_pred ccCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEE
Q 009139 146 AQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVV 191 (542)
Q Consensus 146 ~~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vi 191 (542)
++.+..|||++. ||.|-.=..|++.|.++||+|++.
T Consensus 4 ~~~~~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 4 TAGSATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 455667998864 555556688899999999999754
No 168
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=41.88 E-value=54 Score=37.54 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCC
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFN 197 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~ 197 (542)
..++||++|+++ | .=....+......|+++||+|+|++...+.
T Consensus 367 ~~~~rvLv~spH--P----DDevi~~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 367 PYPKRVIIFSPH--P----DDDVISMGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred cCCceEEEEEeC--C----CchHhhhHHHHHHHHHCCCcEEEEEecCCc
Confidence 346899999976 4 223333444557788899999999865443
No 169
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=41.84 E-value=10 Score=41.47 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=21.8
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
+.=-..+..++++|+++||+|++++|..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4445678999999999999999999863
No 170
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=41.67 E-value=50 Score=31.76 Aligned_cols=36 Identities=19% Similarity=0.042 Sum_probs=28.0
Q ss_pred ceEEEEEecccCCCcCCChHhHHH--hHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVC--GSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v--~~La~~L~~~GheV~Vitp~ 194 (542)
.+||++-. +||.+.+- .++.+.|.+.|++|.|+...
T Consensus 5 ~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 5 GKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 34677644 37777774 79999999999999999854
No 171
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=41.66 E-value=5.8e+02 Score=29.04 Aligned_cols=64 Identities=17% Similarity=0.388 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCCCCCCEE-EEEc-cCcc-ccCHHHHHHHHH--hhhcCCcEEEEEecCchhhHHHHHHHHHH
Q 009139 453 KIALQKELGLPIRPDCPLI-GFIG-RLDY-QKGIDLIRLAAP--EILADDIQFVMLGSGDPQFESWMRDTEAT 520 (542)
Q Consensus 453 k~~lr~~lGl~~~~~~~vI-lfVG-Rl~~-~KGid~LieA~~--~L~~~dv~LVIvG~G~~~~~~~l~~la~~ 520 (542)
+.++++++|++ +++++| ++.| |-.+ .+-+..+++|++ .+. ++.++++.- .++...+.+++..+.
T Consensus 400 ~~~~r~~lgl~--~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~-a~~~~~~~i~~~~~~ 468 (608)
T PRK01021 400 NLSWKEQLHLP--SDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSS-ANPKYDHLILEVLQQ 468 (608)
T ss_pred HHHHHHHcCCC--CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEec-CchhhHHHHHHHHhh
Confidence 34568899985 355555 4454 6655 566789999997 553 368887753 333345566665543
No 172
>CHL00194 ycf39 Ycf39; Provisional
Probab=41.46 E-value=35 Score=34.88 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=25.3
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||+++ ||.|..=..++++|.++||+|++++..
T Consensus 1 MkIlVt----------GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI----------GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE----------CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 677754 555555677888999999999999754
No 173
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=41.46 E-value=1e+02 Score=31.60 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCCCCCCEE-EEEcc-CccccC--HHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCC
Q 009139 453 KIALQKELGLPIRPDCPLI-GFIGR-LDYQKG--IDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDK 524 (542)
Q Consensus 453 k~~lr~~lGl~~~~~~~vI-lfVGR-l~~~KG--id~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~ 524 (542)
+..+..+++++ .++++| +..|- ..+.|. .+...+.++.+.+.+.++++.|...+ .+..+++.+..+..
T Consensus 161 ~~~~~~~~~~~--~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e--~~~~~~i~~~~~~~ 232 (334)
T TIGR02195 161 QAAALAKFGLD--TERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKD--HPAGNEIEALLPGE 232 (334)
T ss_pred HHHHHHHcCCC--CCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhh--HHHHHHHHHhCCcc
Confidence 44566777764 244554 45554 456675 45777888777666788999986543 33444444444433
No 174
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=41.19 E-value=56 Score=33.42 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=29.9
Q ss_pred ccCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 146 AQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 146 ~~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
.....+|||++. ||.+-+-.+|++.|...||+|.++-
T Consensus 22 ~~p~~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~D 58 (350)
T KOG1429|consen 22 VKPSQNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALD 58 (350)
T ss_pred ccCCCCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEe
Confidence 333455899873 7778888999999999999999885
No 175
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=40.40 E-value=4.8e+02 Score=27.73 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=42.4
Q ss_pred HHHHHHhCCCCCCCCCEEEE-Ec-cCcc-ccCHHHHHHHHHhhhc--CCcEEEEEecCchhhHHHHHHHHHHcCCCE
Q 009139 454 IALQKELGLPIRPDCPLIGF-IG-RLDY-QKGIDLIRLAAPEILA--DDIQFVMLGSGDPQFESWMRDTEATYKDKY 525 (542)
Q Consensus 454 ~~lr~~lGl~~~~~~~vIlf-VG-Rl~~-~KGid~LieA~~~L~~--~dv~LVIvG~G~~~~~~~l~~la~~~~~~v 525 (542)
...++.+ ++ +++++|++ .| |-.+ .+-+..+++++..+.+ +++++++.... ....+.+++.......++
T Consensus 173 ~~~~~~~-l~--~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~-~~~~~~i~~~~~~~~~~~ 245 (373)
T PF02684_consen 173 AEAREKL-LD--PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP-EVHEELIEEILAEYPPDV 245 (373)
T ss_pred HHHHHhc-CC--CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-HHHHHHHHHHHHhhCCCC
Confidence 4456666 65 46665544 44 6665 4556899999999876 37888887543 334555666555554433
No 176
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=40.20 E-value=44 Score=35.14 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=29.1
Q ss_pred cCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 147 QTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 147 ~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
+.+..|||++. ||.|-.=..|++.|.++||+|+.+..
T Consensus 17 ~~~~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICIT----------GAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 34466898853 66666778999999999999999874
No 177
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.95 E-value=37 Score=33.80 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=26.2
Q ss_pred eEEEEEecccCCCcCCChHhH--HHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGD--VCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~--~v~~La~~L~~~GheV~Vitp 193 (542)
|+|++.. -||+|. .+.+||.+|+++|.+|.+|=.
T Consensus 1 ~~i~v~g--------KGGvGKTT~a~nLA~~la~~G~rvlliD~ 36 (267)
T cd02032 1 MVLAVYG--------KGGIGKSTTSSNLSVALAKRGKKVLQIGC 36 (267)
T ss_pred CEEEEec--------CCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 6676653 277765 468999999999999999953
No 178
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=38.11 E-value=39 Score=31.75 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=30.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|||+++... ..|-.+.++..+++.|.. |++|.++-.
T Consensus 1 MkilIvY~S-----~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYSS-----RDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEEC-----CCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 788887643 579999999999999988 999988753
No 179
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=37.66 E-value=41 Score=32.72 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=22.9
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
+|.+..=..|++.|++.||||++...+.
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 5555566889999999999999997664
No 180
>PRK05246 glutathione synthetase; Provisional
Probab=36.72 E-value=38 Score=34.89 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=32.0
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
.|||+++.. |.....--......|+++.+++||+|.+++|..
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 489999985 433334444566889999999999999999873
No 181
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.54 E-value=53 Score=33.44 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.5
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|||++++....- ..+|=-..+..||++|.++|..+..++-
T Consensus 1 M~V~i~~Dgg~~--iGmGHV~R~l~LA~~l~k~~~~~~fl~k 40 (318)
T COG3980 1 MKVLIRCDGGLE--IGMGHVMRTLTLARELEKRGFACLFLTK 40 (318)
T ss_pred CcEEEEecCCcc--cCcchhhhHHHHHHHHHhcCceEEEecc
Confidence 899999975432 3455556677899999999988888763
No 182
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=36.48 E-value=43 Score=33.13 Aligned_cols=26 Identities=42% Similarity=0.712 Sum_probs=21.9
Q ss_pred ChHhH--HHhHHHHHHHHCCCeEEEEEe
Q 009139 168 GGLGD--VCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 168 GGl~~--~v~~La~~L~~~GheV~Vitp 193 (542)
||+|. .+.+||.+|+++|++|.+|=.
T Consensus 10 GGvGKTT~~~nLA~~La~~G~kVlliD~ 37 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMGKKVMIVGC 37 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 77775 468999999999999999943
No 183
>PRK05723 flavodoxin; Provisional
Probab=36.08 E-value=55 Score=29.96 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=29.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
|||.++... .+|-.+.+...|++.|.++|++|.++.
T Consensus 1 ~~i~I~ygS-----~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSGS-----VYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEEc-----CchHHHHHHHHHHHHHHHCCCceeecC
Confidence 677777432 579999999999999999999998764
No 184
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=35.36 E-value=3.4e+02 Score=28.71 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=30.6
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHC--CCeEEEEEec
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAAR--GHRVMVVSPR 194 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~--GheV~Vitp~ 194 (542)
+.|||++.+.+... =|==+.+..+|++|++. |.+|.+|+..
T Consensus 8 ~~~Ri~~Yshd~~G----lGHlrR~~~Ia~aLv~d~~~~~Il~IsG~ 50 (400)
T COG4671 8 KRPRILFYSHDLLG----LGHLRRALRIAHALVEDYLGFDILIISGG 50 (400)
T ss_pred ccceEEEEehhhcc----chHHHHHHHHHHHHhhcccCceEEEEeCC
Confidence 46799999876322 23334677899999997 9999999854
No 185
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=35.32 E-value=2.1e+02 Score=26.98 Aligned_cols=68 Identities=28% Similarity=0.377 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEE
Q 009139 451 QCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRG 527 (542)
Q Consensus 451 ~~k~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~ 527 (542)
...+.+++++. +-.++++.|-+.+. .--+.++.+.+.+..+|+||-|.+.-|.++.+....++..+.+
T Consensus 63 ~~~~~l~~~yP-----~l~i~g~~g~f~~~----~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 63 QLKVKLIKEYP-----KLKIVGAFGPLEPE----ERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMI 130 (177)
T ss_pred HHHHHHHHHCC-----CCEEEEECCCCChH----HHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEEE
Confidence 34566777652 33455554555432 2222334444457789999999876677777776666655543
No 186
>PRK13236 nitrogenase reductase; Reviewed
Probab=35.04 E-value=58 Score=33.21 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=29.2
Q ss_pred CCCceEEEEEecccCCCcCCChHhHH--HhHHHHHHHHCCCeEEEEEe
Q 009139 148 TRVSYNIVFVTAEAAPYSKTGGLGDV--CGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 148 ~~~~MkIl~Vt~e~~P~~~~GGl~~~--v~~La~~L~~~GheV~Vitp 193 (542)
+...||++-|. .-||+|.. +.+||.+|+++|.+|.++=.
T Consensus 2 ~~~~~~~~~~~-------GKGGVGKTt~a~NLA~~La~~G~rVLliD~ 42 (296)
T PRK13236 2 TDENIRQIAFY-------GKGGIGKSTTSQNTLAAMAEMGQRILIVGC 42 (296)
T ss_pred CCcCceEEEEE-------CCCcCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 34456766663 24888865 58999999999999999943
No 187
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=34.93 E-value=57 Score=32.08 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=28.2
Q ss_pred eEEEEEecccCCCcCCChHhHH--HhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDV--CGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~--v~~La~~L~~~GheV~Vitp~ 194 (542)
|||+.|+. .-||+|.. ..+|+.+|+++|.+|.+|=.+
T Consensus 1 M~iI~v~n------~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 1 MKLLTFCS------FKGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred CeEEEEEC------CCCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 66666664 24888865 578899999999999998543
No 188
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=34.64 E-value=1.2e+02 Score=28.22 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=21.7
Q ss_pred cCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcC
Q 009139 481 KGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYK 522 (542)
Q Consensus 481 KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~ 522 (542)
-|.|++.+.++...+++.++.++|..++...+..+.+.++++
T Consensus 30 ~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp 71 (171)
T cd06533 30 TGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYP 71 (171)
T ss_pred CcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCC
Confidence 355666555555544455666666554433333344444555
No 189
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=34.59 E-value=47 Score=33.31 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=25.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
||||+...+-.. .-| +..|+++|.+ +++|+|++|..
T Consensus 1 M~ILvtNDDGi~---apG----l~aL~~~l~~-~~~V~VvAP~~ 36 (253)
T PRK13933 1 MNILLTNDDGIN---AEG----INTLAELLSK-YHEVIIVAPEN 36 (253)
T ss_pred CeEEEEcCCCCC---Chh----HHHHHHHHHh-CCcEEEEccCC
Confidence 899987765322 122 7788888876 57999999974
No 190
>PRK07454 short chain dehydrogenase; Provisional
Probab=34.42 E-value=59 Score=31.31 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=23.8
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
.||.++|+- ..||++ ..+++.|.++|++|.++..
T Consensus 5 ~~k~vlItG------~sg~iG---~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITG------ASSGIG---KATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 456666662 135554 6788888999999888864
No 191
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=34.40 E-value=50 Score=33.00 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=27.3
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYF 196 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~ 196 (542)
||||+...+ |=-..-+.-|+++|. .+++|+|++|...
T Consensus 1 mrILlTNDD-------Gi~a~Gi~aL~~al~-~~~dV~VVAP~~~ 37 (252)
T COG0496 1 MRILLTNDD-------GIHAPGIRALARALR-EGADVTVVAPDRE 37 (252)
T ss_pred CeEEEecCC-------ccCCHHHHHHHHHHh-hCCCEEEEccCCC
Confidence 899976654 222234778888888 8999999999753
No 192
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=33.73 E-value=70 Score=30.29 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=28.3
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
||++.|+.. ...-|-.+.+..|+.+|+++|++|.+|=.
T Consensus 17 ~kvI~v~s~----kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSV----KPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CcEEEEecC----CCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 788777752 11234555889999999999999999853
No 193
>PRK05568 flavodoxin; Provisional
Probab=33.67 E-value=81 Score=27.88 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=28.8
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
||++|... ..|-.+.++..+++.+.+.|++|.++-.
T Consensus 3 ~~~IvY~S-----~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 3 KINIIYWS-----GTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred eEEEEEEC-----CCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 45555432 4699999999999999999999998854
No 194
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=33.51 E-value=74 Score=30.33 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=31.0
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHH-CCCeEEEEEe
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAA-RGHRVMVVSP 193 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~-~GheV~Vitp 193 (542)
+|||++|... + .|-.+..+..+++.+.+ .|++|.++..
T Consensus 1 M~kilIvy~S--~---~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYS--M---YGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcC--C---CCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 3699988743 3 47789999999999988 9999999974
No 195
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=33.32 E-value=62 Score=34.38 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=29.4
Q ss_pred CCceEEEEEecccCCCcCCChHhHH--HhHHHHHHHHCCCeEEEEEe
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGDV--CGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~~--v~~La~~L~~~GheV~Vitp 193 (542)
..+|+|+.|+.. .||+|.. +.+||.+|+++|++|.+|=.
T Consensus 101 g~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~ 141 (387)
T TIGR03453 101 GEHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAIDL 141 (387)
T ss_pred CCCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 356777777652 4777754 57899999999999999953
No 196
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=33.24 E-value=59 Score=32.37 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=21.5
Q ss_pred ChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 168 GGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 168 GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
||+|.. +.+||.+|+++|++|.||=
T Consensus 11 GGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 777754 6899999999999999994
No 197
>PRK09004 FMN-binding protein MioC; Provisional
Probab=33.17 E-value=71 Score=28.93 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=28.4
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
||.++... .+|-.+.+...|++.+.++|++|.++.
T Consensus 3 ~i~I~ygS-----~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 3 DITLISGS-----TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred eEEEEEEc-----CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 55555432 579999999999999999999999864
No 198
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=33.08 E-value=51 Score=33.26 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=26.5
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
||||+....-. -+.-+..|.++|.+.| +|+|++|..
T Consensus 1 M~ILlTNDDGi-------~apGi~aL~~al~~~g-~V~VvAP~~ 36 (266)
T PRK13934 1 MKILVTNDDGV-------HSPGLRLLYEFVSPLG-EVDVVAPET 36 (266)
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhCC-cEEEEccCC
Confidence 78988766522 2233778888888887 899999974
No 199
>PRK07308 flavodoxin; Validated
Probab=32.64 E-value=79 Score=28.31 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 166 KTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 166 ~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
..|-.+.++..+++.|.+.|++|.+.-
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEe
Confidence 469999999999999999999988764
No 200
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=32.63 E-value=62 Score=32.46 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=25.5
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||+++ ||.+. -..|++.|.+.||+|.+.+..
T Consensus 1 m~ILvl----------GGT~e-gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLM----------GGTVD-SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEE----------echHH-HHHHHHHHHhCCCeEEEEEcc
Confidence 677765 66555 799999999999999988754
No 201
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=32.51 E-value=1e+02 Score=27.41 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=29.1
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCC-CeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARG-HRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~G-heV~Vitp 193 (542)
||+.++... +||. -=-.....++|++|.+.| ++|.|+--
T Consensus 1 m~~~Ivvt~-ppYg--~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 1 MKYTIVVTG-PPYG--TESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred CeEEEEEec-CCCc--cHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 788887765 5653 245667899999999997 68888863
No 202
>PRK09739 hypothetical protein; Provisional
Probab=31.96 E-value=95 Score=29.48 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=29.6
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|||++|... |. ..+=....+..+.+++.+.|++|+++-..
T Consensus 3 mmkiliI~~s--p~-~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 3 SMRIYLVWAH--PR-HDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CceEEEEEcC--CC-CCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 7899999875 52 22334566777778888899999988643
No 203
>PRK06924 short chain dehydrogenase; Provisional
Probab=31.81 E-value=60 Score=31.44 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=18.8
Q ss_pred CChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 167 TGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 167 ~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
.||++ ..+++.|+++|++|.+++.
T Consensus 10 sggiG---~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 10 SQGLG---EAIANQLLEKGTHVISISR 33 (251)
T ss_pred CchHH---HHHHHHHHhcCCEEEEEeC
Confidence 36655 6679999999999988764
No 204
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=31.57 E-value=87 Score=29.59 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=27.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCC-CeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARG-HRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~G-heV~Vitp 193 (542)
||||+|... |....+-.......+.+++.+.| ++|+++=.
T Consensus 1 mkiLvI~as--p~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL 41 (199)
T PF02525_consen 1 MKILVINAS--PRPEGSFSRALADAFLEGLQEAGPHEVEIRDL 41 (199)
T ss_dssp EEEEEEE----SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEEEEEcC--CCCccCHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 899999875 42112334666788889999999 99998843
No 205
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=31.45 E-value=83 Score=31.76 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=27.4
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.++-++||- -.+|+| ..+++.|+++|++|.++..+
T Consensus 5 ~~~~~lITG------ASsGIG---~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 5 KGKTALITG------ASSGIG---AELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCcEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeCc
Confidence 345566664 258887 78999999999999999865
No 206
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=31.37 E-value=59 Score=32.55 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=26.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
||||+....-. -+.-+..|.++|.+. |+|+|++|..
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~~-~~V~VvAP~~ 36 (250)
T PRK00346 1 MRILLTNDDGI-------HAPGIRALAEALREL-ADVTVVAPDR 36 (250)
T ss_pred CeEEEECCCCC-------CChhHHHHHHHHHhC-CCEEEEeCCC
Confidence 78998766522 222378888999988 7999999974
No 207
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=31.35 E-value=59 Score=31.25 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=22.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
||+++|+- ..||++ ..+++.|+++|++|.++..
T Consensus 1 ~~~~lItG------a~g~iG---~~l~~~l~~~g~~v~~~~~ 33 (247)
T PRK09730 1 MAIALVTG------GSRGIG---RATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 56666662 135555 6688899999999987653
No 208
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=31.19 E-value=64 Score=32.32 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=25.9
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYF 196 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~ 196 (542)
||||+....-. -+.-+..|.++|++ +|+|+|++|...
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13935 1 MNILVTNDDGI-------TSPGIIILAEYLSE-KHEVFVVAPDKE 37 (253)
T ss_pred CeEEEECCCCC-------CCHHHHHHHHHHHh-CCcEEEEccCCC
Confidence 79998766522 12236778888875 579999999753
No 209
>PLN03007 UDP-glucosyltransferase family protein
Probab=31.17 E-value=78 Score=34.76 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
+++++|+++.. | .-|==.-+.+|++.|+.+|++|++++...
T Consensus 3 ~~~~hVvlvp~---p---a~GHi~P~L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 3 HEKLHILFFPF---M---AHGHMIPTLDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred CCCcEEEEECC---C---ccccHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 34568998864 3 23444457899999999999999998653
No 210
>PRK05693 short chain dehydrogenase; Provisional
Probab=31.12 E-value=60 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=24.3
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||+++|+- ..||+| ..+++.|.++|++|.+++..
T Consensus 1 mk~vlItG------asggiG---~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITG------CSSGIG---RALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEec------CCChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 56666763 247777 56777888999999887643
No 211
>PRK05569 flavodoxin; Provisional
Probab=30.97 E-value=96 Score=27.40 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=29.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+||+++... + .|-.+.++..+++.+.+.|++|.++-..
T Consensus 2 ~ki~iiY~S--~---tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 2 KKVSIIYWS--C---GGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred CeEEEEEEC--C---CCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 366666532 3 6999999999999999999998877543
No 212
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=30.82 E-value=69 Score=34.39 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=28.4
Q ss_pred CceEEEEEecccCCCcCCChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
..|+|+-|+.. -||+|.. +.+||.+|+++|++|.+|=
T Consensus 119 ~~~~vIav~n~------KGGvGKTTta~nLA~~LA~~G~rVLlID 157 (405)
T PRK13869 119 EHLQVIAVTNF------KGGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred CCceEEEEEcC------CCCCCHHHHHHHHHHHHHhcCCceEEEc
Confidence 35677666642 4887764 6889999999999999994
No 213
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=30.80 E-value=61 Score=32.96 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=27.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||++++.+-.-+ ....+.+++.++||+|.++.+.
T Consensus 1 m~~~i~~~~~s~~--------s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTLY--------SCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcch--------hHHHHHHHHHHcCCeEEEEehH
Confidence 8999998763221 3478999999999999999765
No 214
>PRK05920 aromatic acid decarboxylase; Validated
Probab=30.58 E-value=94 Score=30.09 Aligned_cols=37 Identities=19% Similarity=0.035 Sum_probs=27.2
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.+||++-.+ .+.......++.+.|.+.|++|.|++..
T Consensus 3 ~krIllgIT-------Gsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAIT-------GASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEEe-------CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 467776543 1333456788999999999999999855
No 215
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=30.56 E-value=2.4e+02 Score=28.30 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEE-ccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEc
Q 009139 451 QCKIALQKELGLPIRPDCPLIGFI-GRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWV 529 (542)
Q Consensus 451 ~~k~~lr~~lGl~~~~~~~vIlfV-GRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~ 529 (542)
+....+++++. .-.+++.- |=+++... +.+++.+.. ....+++||.|.+.-+.++.+...+++..+.+-+
T Consensus 123 ~a~~~l~~~~p-----~l~ivg~h~GYf~~~e~-~~i~~~I~~---s~pdil~VgmG~P~QE~wi~~~~~~~~~~v~igV 193 (253)
T COG1922 123 QAAAKLRAKYP-----GLKIVGSHDGYFDPEEE-EAIVERIAA---SGPDILLVGMGVPRQEIWIARNRQQLPVAVAIGV 193 (253)
T ss_pred HHHHHHHHHCC-----CceEEEecCCCCChhhH-HHHHHHHHh---cCCCEEEEeCCCchhHHHHHHhHHhcCCceEEec
Confidence 34455666653 22344444 66666555 555555544 4678899999988778888888888876654433
Q ss_pred c
Q 009139 530 G 530 (542)
Q Consensus 530 G 530 (542)
|
T Consensus 194 G 194 (253)
T COG1922 194 G 194 (253)
T ss_pred c
Confidence 3
No 216
>PRK07023 short chain dehydrogenase; Provisional
Probab=30.43 E-value=76 Score=30.61 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=23.6
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|+|++... .||++ ..+++.|++.|++|.+++.+
T Consensus 1 ~~~vlItGa-------sggiG---~~ia~~l~~~G~~v~~~~r~ 34 (243)
T PRK07023 1 AVRAIVTGH-------SRGLG---AALAEQLLQPGIAVLGVARS 34 (243)
T ss_pred CceEEEecC-------CcchH---HHHHHHHHhCCCEEEEEecC
Confidence 366665442 36666 66778888999999887643
No 217
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=30.18 E-value=70 Score=32.22 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=24.3
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||+++.. |.++ ..++..|++.||+|++++.+
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 78888763 5555 55677788899999999863
No 218
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.99 E-value=65 Score=32.57 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=23.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|||+++.. |.++ ..++..|++.||+|++++.
T Consensus 1 mkI~IiG~--------G~iG---~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVG---GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHH---HHHHHHHHHCCCceEEEec
Confidence 78888863 5555 4566778888999999986
No 219
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=29.75 E-value=69 Score=32.14 Aligned_cols=25 Identities=40% Similarity=0.748 Sum_probs=21.7
Q ss_pred ChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 168 GGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 168 GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
||+|.. +.+||.+|+++|.+|.+|=
T Consensus 10 GGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 10 GGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 888765 5899999999999999994
No 220
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.66 E-value=7.2e+02 Score=26.55 Aligned_cols=147 Identities=16% Similarity=0.032 Sum_probs=76.6
Q ss_pred CCCccEEEECC-CchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhccccccccccccccc
Q 009139 288 YGEKCIFLVND-WHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHA 366 (542)
Q Consensus 288 ~~~pDIIH~H~-~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~ 366 (542)
..+||+|-+|. ..+.+++++++.+ .++|+..--=+......+ +|.+.-+
T Consensus 90 ~~kPD~VlVhGDT~t~lA~alaa~~-------~~IpV~HvEAGlRt~~~~---------~PEE~NR-------------- 139 (383)
T COG0381 90 EEKPDLVLVHGDTNTTLAGALAAFY-------LKIPVGHVEAGLRTGDLY---------FPEEINR-------------- 139 (383)
T ss_pred hhCCCEEEEeCCcchHHHHHHHHHH-------hCCceEEEecccccCCCC---------CcHHHHH--------------
Confidence 35999999995 4555555554432 578887654444211100 1221110
Q ss_pred ccchhHHHHHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCC-cCCCcCCCCcccccccccccc
Q 009139 367 LDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGI-DITEWNPSSDEHIASHYSIDD 445 (542)
Q Consensus 367 ~~~~~~~~~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGV-D~~~f~p~~~~~~~~~~~~~d 445 (542)
+..=..|+.-+++++..++.+.+. | .++++|.++-|-+ |.-.+....
T Consensus 140 ----------~l~~~~S~~hfapte~ar~nLl~E----G------~~~~~IfvtGnt~iDal~~~~~~------------ 187 (383)
T COG0381 140 ----------RLTSHLSDLHFAPTEIARKNLLRE----G------VPEKRIFVTGNTVIDALLNTRDR------------ 187 (383)
T ss_pred ----------HHHHHhhhhhcCChHHHHHHHHHc----C------CCccceEEeCChHHHHHHHHHhh------------
Confidence 111234677788888888888752 2 3567788887753 321111000
Q ss_pred cchhHHHHHHHHHH-hCCCCCCCCCEEEE-EccCcc-ccCHHHHHHHHHhhhcC--CcEEEEE
Q 009139 446 LSGKVQCKIALQKE-LGLPIRPDCPLIGF-IGRLDY-QKGIDLIRLAAPEILAD--DIQFVML 503 (542)
Q Consensus 446 ~~~k~~~k~~lr~~-lGl~~~~~~~vIlf-VGRl~~-~KGid~LieA~~~L~~~--dv~LVIv 503 (542)
.......... ++. .++.+|+. .=|-+- -+++..+.+|+.++.+. ++.++.-
T Consensus 188 ----~~~~~~~~~~~~~~---~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp 243 (383)
T COG0381 188 ----VLEDSKILAKGLDD---KDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYP 243 (383)
T ss_pred ----hccchhhHHhhhcc---ccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEe
Confidence 0000111111 222 23344443 334333 49999999999998763 6666654
No 221
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=29.65 E-value=47 Score=33.73 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.6
Q ss_pred CChHhHHHhHHHHHHHHCCCeEEEEEecCC
Q 009139 167 TGGLGDVCGSLPVALAARGHRVMVVSPRYF 196 (542)
Q Consensus 167 ~GGl~~~v~~La~~L~~~GheV~Vitp~~~ 196 (542)
+||.+-.=..|...|.+.||+|+|++.+.+
T Consensus 4 TGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 4 TGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred eccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 488888889999999999999999997643
No 222
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=29.31 E-value=85 Score=35.31 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=22.8
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|+++|+- ..||+| ..+++.|.++|++|.++..+
T Consensus 81 KvVLVTG------ATGgIG---~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 81 DLAFVAG------ATGKVG---SRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCeEEEEeCC
Confidence 4556652 246666 55667888899999988654
No 223
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=29.00 E-value=68 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=22.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|||+++ ||.+-.-..|++.|.++|++|+++..
T Consensus 1 m~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVT----------GGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEE----------CCCChHHHHHHHHHHHCCCeEEEEec
Confidence 677754 33333446778888999999998853
No 224
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=28.84 E-value=79 Score=30.88 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=22.3
Q ss_pred CChHhH--HHhHHHHHHHHCCCeEEEEEe
Q 009139 167 TGGLGD--VCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 167 ~GGl~~--~v~~La~~L~~~GheV~Vitp 193 (542)
.||+|. .+.+||.+|+++|.+|.+|=.
T Consensus 10 kGGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 10 KGGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 477776 678999999999999999843
No 225
>PRK06953 short chain dehydrogenase; Provisional
Probab=28.80 E-value=66 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=23.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||.++|+- ..||++ ..+++.|.++|++|.++...
T Consensus 1 ~~~vlvtG------~sg~iG---~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVG------ASRGIG---REFVRQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEc------CCCchh---HHHHHHHHhCCCEEEEEECC
Confidence 55566652 134444 67788888999998887643
No 226
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=28.64 E-value=59 Score=29.84 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=23.3
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||.+..=..+++.|.++||+|++++.+
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 666667788999999999999999965
No 227
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.31 E-value=1e+02 Score=32.04 Aligned_cols=37 Identities=38% Similarity=0.662 Sum_probs=29.6
Q ss_pred ceEEEEEecccCCCcCCChHhH--HHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGD--VCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~--~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|||++++- -||+|. ....+|-.|++.|.+|.+++..
T Consensus 1 ~~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 1 MTRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred CcEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 368888884 499999 6667778899999888888754
No 228
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.19 E-value=79 Score=30.64 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=19.3
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||.+-.-..+++.|+++|++|.++...
T Consensus 9 G~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 9 GGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 333334477888999999999887643
No 229
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=28.00 E-value=96 Score=30.91 Aligned_cols=35 Identities=29% Similarity=0.620 Sum_probs=26.4
Q ss_pred eEEEEEecccCCCcCCChHh--HHHhHHHHHHHHCCCeEEEEE
Q 009139 152 YNIVFVTAEAAPYSKTGGLG--DVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~--~~v~~La~~L~~~GheV~Vit 192 (542)
||++.|.. + .||+| +.+..|+.+|+++|.+|.+|=
T Consensus 1 M~~iai~s---~---kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVS---P---KGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred CcEEEEec---C---CCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 66665553 2 36665 567899999999999999994
No 230
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.94 E-value=71 Score=31.22 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=23.0
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
||.+..-..+++.|.++||+|.+++++.
T Consensus 7 GatG~~G~~~~~~L~~~~~~v~~~~r~~ 34 (275)
T COG0702 7 GATGFVGGAVVRELLARGHEVRAAVRNP 34 (275)
T ss_pred ecccchHHHHHHHHHhCCCEEEEEEeCH
Confidence 5555566888999999999999999763
No 231
>PRK06849 hypothetical protein; Provisional
Probab=27.88 E-value=86 Score=33.16 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=27.0
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.+|+|+++... .....++++.|.+.||+|+++...
T Consensus 3 ~~~~VLI~G~~----------~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGAR----------APAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCC----------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899886532 224689999999999999999754
No 232
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=27.84 E-value=46 Score=35.01 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.0
Q ss_pred HhHHHHHHHHCCCeEEEEEec
Q 009139 174 CGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 174 v~~La~~L~~~GheV~Vitp~ 194 (542)
+..|+++|+++||+|+++++.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH
Confidence 468999999999999999975
No 233
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=27.66 E-value=90 Score=30.31 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=22.8
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|+|+++.. .||++ ..+++.|.++|++|.+++.
T Consensus 1 ~~vlItGa-------sg~iG---~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGA-------TAGFG---ECITRRFIQQGHKVIATGR 32 (248)
T ss_pred CEEEEECC-------CchHH---HHHHHHHHHCCCEEEEEEC
Confidence 56665442 46666 5568889999999988864
No 234
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=27.50 E-value=50 Score=32.35 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=22.4
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
-|++.+-..+|+.|.++||+|++|-..
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 355667799999999999999999643
No 235
>PRK08105 flavodoxin; Provisional
Probab=27.31 E-value=1e+02 Score=27.99 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 166 KTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 166 ~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
.+|-.+.+...|++.|.++|++|.++..
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 5799999999999999999999998754
No 236
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=27.23 E-value=71 Score=31.92 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=21.7
Q ss_pred ChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 168 GGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 168 GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
||+|.. +.+|+.+|+++|.+|.+|=
T Consensus 10 GGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 10 GGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 887765 5899999999999999994
No 237
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.07 E-value=1.1e+02 Score=28.89 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=25.8
Q ss_pred eEEEEEecccCCCcCCCh-HhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGG-LGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GG-l~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+||++..+ |+ ....+.++.+.|.+.|++|.|+...
T Consensus 2 k~Ill~vt--------Gsiaa~~~~~li~~L~~~g~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVS--------GSIAAYKAADLTSQLTKRGYQVTVLMTK 37 (182)
T ss_pred CEEEEEEe--------ChHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 46666553 33 3445789999999999999999754
No 238
>PRK08177 short chain dehydrogenase; Provisional
Probab=26.97 E-value=82 Score=30.07 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=23.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||.++|+- ..||++ ..+++.|+++|++|.+++..
T Consensus 1 ~k~vlItG------~sg~iG---~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIG------ASRGLG---LGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHhCCCEEEEEeCC
Confidence 45555553 236666 55788899999999888754
No 239
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=26.82 E-value=79 Score=31.62 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.0
Q ss_pred ChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 168 GGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 168 GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
||+|.. +.+|+.+|+++|.+|.+|=
T Consensus 10 GGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 888765 6899999999999999994
No 240
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=26.76 E-value=1.3e+02 Score=26.26 Aligned_cols=39 Identities=18% Similarity=0.035 Sum_probs=31.0
Q ss_pred ceEEEEEecccCCCcCCChHhHHH--hHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVC--GSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v--~~La~~L~~~GheV~Vitp~ 194 (542)
.|||+.|+. +| .|-...++ ..|.++-.++||++.|=+..
T Consensus 2 ~mkivaVta--cp---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 2 MAYLVAVTA--CV---SGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred CceEEEEee--CC---CcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 389999986 35 58888877 67778888899999998854
No 241
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.64 E-value=98 Score=27.52 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
...|||.+|... ++| ..|+++|.+.||+|.-+..+
T Consensus 8 ~~~l~I~iIGaG-----rVG------~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAG-----RVG------TALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTS-----CCC------CHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCC-----HHH------HHHHHHHHHCCCeEEEEEeC
Confidence 357999999753 344 78999999999999888644
No 242
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.49 E-value=58 Score=29.96 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.0
Q ss_pred hHHHhHHHHHHHHCCCeEEEEEec
Q 009139 171 GDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 171 ~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|.+....++.|.+.|++|+||.|.
T Consensus 22 G~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 22 GKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCc
Confidence 345688899999999999999765
No 243
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.46 E-value=86 Score=32.09 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=25.2
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.|||+++.. |++|.+. +-.|++.|++|++++..
T Consensus 2 ~m~I~IiGa--------GaiG~~~---a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGA--------GSLGSLW---ACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECC--------CHHHHHH---HHHHHhCCCCeEEEEec
Confidence 589998863 8877654 44567789999999864
No 244
>PLN02206 UDP-glucuronate decarboxylase
Probab=26.22 E-value=89 Score=33.93 Aligned_cols=35 Identities=40% Similarity=0.526 Sum_probs=27.6
Q ss_pred CCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEE
Q 009139 148 TRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 148 ~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vit 192 (542)
..+.|||++. ||.|-+=..|++.|.++|++|.++.
T Consensus 116 ~~~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 116 KRKGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred ccCCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 3456898853 6666667889999999999999875
No 245
>PRK06101 short chain dehydrogenase; Provisional
Probab=26.07 E-value=89 Score=30.18 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=23.4
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|+.++|+- ..||+| ..+++.|+++|++|.++..
T Consensus 1 ~~~vlItG------as~giG---~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITG------ATSGIG---KQLALDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEc------CCcHHH---HHHHHHHHhCCCEEEEEEC
Confidence 45555653 246666 6788889999999888764
No 246
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=26.02 E-value=5.4e+02 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=19.6
Q ss_pred CChHhHHHhHHHHHH--HHCCCeEEEEEecC
Q 009139 167 TGGLGDVCGSLPVAL--AARGHRVMVVSPRY 195 (542)
Q Consensus 167 ~GGl~~~v~~La~~L--~~~GheV~Vitp~~ 195 (542)
.||=-.-+..|.+.+ ....++..+++-..
T Consensus 7 sGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 7 SGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred CcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 488777777888877 22356777777543
No 247
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.91 E-value=81 Score=29.85 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=21.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|||+.+...| +| .-+|-.|++.||+|+.+=.
T Consensus 1 M~I~ViGlGy-----vG------l~~A~~lA~~G~~V~g~D~ 31 (185)
T PF03721_consen 1 MKIAVIGLGY-----VG------LPLAAALAEKGHQVIGVDI 31 (185)
T ss_dssp -EEEEE--ST-----TH------HHHHHHHHHTTSEEEEE-S
T ss_pred CEEEEECCCc-----ch------HHHHHHHHhCCCEEEEEeC
Confidence 8999887643 23 6788899999999999853
No 248
>PRK00170 azoreductase; Reviewed
Probab=25.89 E-value=1.3e+02 Score=28.32 Aligned_cols=40 Identities=8% Similarity=0.024 Sum_probs=27.3
Q ss_pred ceEEEEEecccCCCcCCChHh-HHHhHHHHHHHHC--CCeEEEEEe
Q 009139 151 SYNIVFVTAEAAPYSKTGGLG-DVCGSLPVALAAR--GHRVMVVSP 193 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~-~~v~~La~~L~~~--GheV~Vitp 193 (542)
+|||++|... |- ..+|.. ..+..+.+.|.+. ||+|+++-.
T Consensus 1 Mmkil~i~gS--pr-~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSS--IL-GDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecC--CC-CCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 5899999865 42 222443 4555677778777 999998864
No 249
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.83 E-value=1.2e+02 Score=30.69 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=29.3
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|||++++....|.... .=.....+.++|.++||+|.++-+.
T Consensus 4 ~~~v~~~~g~~~~~~~~--~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREV--SLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceE--eHHhHHHHHHHHHHCCCEEEEEecC
Confidence 35899988665553211 1123489999999999999999644
No 250
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=25.57 E-value=1.2e+02 Score=29.66 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=24.4
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.+|+|+++.. .|+++ ..+++.|.+.||+|++++..
T Consensus 16 ~~~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 16 KTKTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cCCeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEecC
Confidence 3577877653 36655 56677788899999887643
No 251
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.49 E-value=90 Score=30.10 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=18.9
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||++ ..+++.|.++|++|.++...
T Consensus 11 ~giG---~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 11 SDIA---RACARRYAAAGARLYLAARD 34 (243)
T ss_pred cHHH---HHHHHHHHhcCCEEEEEeCC
Confidence 5555 77888999999999888643
No 252
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=25.06 E-value=1.4e+02 Score=26.58 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=22.7
Q ss_pred CChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 167 TGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 167 ~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
..|....+.+||..|++.|++|.+|-...
T Consensus 11 g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 11 GVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp TSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 57888899999999999999988886543
No 253
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=25.05 E-value=1.4e+02 Score=29.66 Aligned_cols=40 Identities=10% Similarity=0.273 Sum_probs=29.6
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
...|++.|+.-- ..-|-.+.+.+||.+|++.|.+|.+|=.
T Consensus 101 ~~~~vi~vts~~----~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 101 EGRKALAVVSAK----SGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCCeEEEEECCC----CCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 345666666521 2456777889999999999999999943
No 254
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=25.04 E-value=1e+02 Score=32.80 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCceEEEEEecccCCCcCCChHhH--HHhHHHHHHHHCCCeEEEEE
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGD--VCGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~--~v~~La~~L~~~GheV~Vit 192 (542)
..+++|+-|+.. -||+|. .+.+||.+|+++|++|.+|=
T Consensus 103 ~~~~~vIav~n~------KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 103 DKNPVVLAVMSH------KGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCCceEEEEecC------CCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345677666642 488776 46889999999999999995
No 255
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=24.94 E-value=1.6e+02 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCceEEEEEecccCCCcCCChH--hHHHhHHHHHHHH-CCCeEEEEEec
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGL--GDVCGSLPVALAA-RGHRVMVVSPR 194 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl--~~~v~~La~~L~~-~GheV~Vitp~ 194 (542)
+..|||+.|+.. .||. .+...+||.+|++ .|++|.+|=..
T Consensus 32 ~~~~~vi~v~s~------kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 32 KKNNNLIMVTSS------LPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCCeEEEEECC------CCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345677766642 2554 4566889999997 69999999543
No 256
>PRK08267 short chain dehydrogenase; Provisional
Probab=24.93 E-value=94 Score=30.33 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||++ ..+++.|+++|++|.++..+
T Consensus 11 g~iG---~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 11 SGIG---RATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred chHH---HHHHHHHHHCCCeEEEEeCC
Confidence 5555 67788889999999988643
No 257
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=24.88 E-value=1e+02 Score=30.48 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=28.9
Q ss_pred EEEEEecccCCCcCCChHhH--HHhHHHHHHHHCCCeEEEEEecC
Q 009139 153 NIVFVTAEAAPYSKTGGLGD--VCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~--~v~~La~~L~~~GheV~Vitp~~ 195 (542)
+|..||+ .-||++. ...+|+.+|+++|+.|.+|-...
T Consensus 3 ~iIVvTS------GKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTS------GKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEec------CCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 5777775 3588875 56789999999999999996543
No 258
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=24.66 E-value=1e+02 Score=31.34 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=24.4
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|||++|.. |.++ ..++..|++.||+|+++...
T Consensus 1 mmkI~iiG~--------G~mG---~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGA--------GSWG---TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECC--------CHHH---HHHHHHHHhCCCEEEEEECC
Confidence 478888763 5555 55677788899999988753
No 259
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=24.34 E-value=1.1e+02 Score=31.18 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.8
Q ss_pred ChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 168 GGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 168 GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
||+|.. +.+|+.+|+++|.+|.+|=
T Consensus 13 GGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 13 GGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 887765 6899999999999999994
No 260
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.13 E-value=89 Score=24.70 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=20.8
Q ss_pred hHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 171 GDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 171 ~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
+..-.++|..|+++|.+|+++....
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccc
Confidence 3456889999999999999998653
No 261
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=23.97 E-value=1.1e+02 Score=33.09 Aligned_cols=38 Identities=34% Similarity=0.432 Sum_probs=29.9
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
..+|++.. | ..|=-..+.++++.|+++||+|+++++..
T Consensus 6 ~~~il~~~----p---~~sH~~~~~~la~~L~~~gh~vt~~~~~~ 43 (496)
T KOG1192|consen 6 AHNILVPF----P---GQSHLNPMLQLAKRLAERGHNVTVVTPSF 43 (496)
T ss_pred ceeEEEEC----C---cccHHHHHHHHHHHHHHcCCceEEEEeec
Confidence 44555544 3 36777789999999999999999999765
No 262
>PLN02712 arogenate dehydrogenase
Probab=23.84 E-value=1.5e+02 Score=34.23 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=31.7
Q ss_pred ccCcccccCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 140 VEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 140 ~~~~~~~~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+..+..+....+|||++|.. |.+| ..++++|.+.|++|.++...
T Consensus 41 ~~~~~~~~~~~~~kIgIIG~--------G~mG---~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 41 PLPNSNPDNTTQLKIAIIGF--------GNYG---QFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCCCCCccCCCCEEEEEcc--------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 44455566667899999852 5444 56888999999999887653
No 263
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=23.71 E-value=1.1e+02 Score=31.13 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=24.8
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.+|.++|+- ..||++ ..+++.|+++|++|.+++.+
T Consensus 5 ~~k~vlVTG------as~gIG---~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 5 AKGTVIITG------ASSGVG---LYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CCCEEEEEc------CCChHH---HHHHHHHHHCCCEEEEEECC
Confidence 345666663 247766 56788999999999888643
No 264
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=23.70 E-value=1.1e+02 Score=29.79 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=23.3
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|+|++... .||++ ..+++.|+++|++|.++..
T Consensus 1 m~vlItGa-------s~gIG---~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 1 MNVLVTAS-------SRGIG---FNVARELLKKGARVVISSR 32 (259)
T ss_pred CeEEEEcC-------CcHHH---HHHHHHHHHcCCEEEEEeC
Confidence 66766542 36666 6678889999999888764
No 265
>PLN02208 glycosyltransferase family protein
Probab=23.67 E-value=1.3e+02 Score=32.74 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=29.6
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+.++|+++.. | .-|=-.-+.+||+.|+.+|++|+++++.
T Consensus 3 ~~~hvv~~P~---p---aqGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 3 PKFHAFMFPW---F---AFGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CCCEEEEecC---c---cccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 4567887753 2 2455556789999999999999999955
No 266
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=23.66 E-value=99 Score=31.87 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=24.6
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
+|||++|.. |.++ ..++..|++.||+|+++..
T Consensus 2 ~mkI~IiG~--------G~mG---~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 2 MARICVLGA--------GSIG---CYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CceEEEECC--------CHHH---HHHHHHHHhcCCcEEEEec
Confidence 488998863 5555 5567788889999999975
No 267
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=23.64 E-value=1.4e+02 Score=29.35 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=31.4
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|+|+.|+.. ...|-.+.+..|++.|.++|++|-++-+.
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 777777742 35788889999999999999999999754
No 268
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=23.38 E-value=1.6e+02 Score=25.97 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=27.2
Q ss_pred CCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 166 KTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 166 ~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
.+|-.+.+...+++.|.++|++|.++....
T Consensus 6 ~tG~te~~A~~ia~~l~~~g~~~~~~~~~~ 35 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRERGVEVRVVDLDD 35 (143)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSEEEEEEGGG
T ss_pred CchhHHHHHHHHHHHHHHcCCceeeechhh
Confidence 469999999999999999999999998663
No 269
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=23.31 E-value=1.5e+02 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=27.1
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeE-EEEE
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRV-MVVS 192 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV-~Vit 192 (542)
|++++... .||. +-.++...++++++.+.||+| .|+-
T Consensus 1 ~~~iv~~~-~P~~--~~~~~~al~~A~aa~~~gh~v~~vFf 38 (127)
T TIGR03012 1 KYTLLVTG-PPYG--TQAASSAYQFAQALLAKGHEIVRVFF 38 (127)
T ss_pred CEEEEEeC-CCCC--cHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 35555543 5753 557888999999999999995 6665
No 270
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=23.22 E-value=1.5e+02 Score=28.30 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=29.6
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHC-CCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAAR-GHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~-GheV~Vitp 193 (542)
|||++|... ..|-.+..+..+++.+.+. |++|.++-.
T Consensus 1 ~kilIiY~S-----~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 1 VKVLVLYYS-----MYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred CeEEEEEeC-----CCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 578887643 3599999999999999875 999998864
No 271
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.12 E-value=65 Score=35.09 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=34.8
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|++++...+||+ .||+..-+.+|.++|-+.-..|..|++.
T Consensus 1 ~v~l~~egtyp~~-~ggvs~w~~~~i~~~p~~~f~~~~~~~~ 41 (475)
T cd03813 1 DVCLVLEGTYPYV-RGGVSSWVHQLITGLPEHTFAVVFIGAD 41 (475)
T ss_pred CeEEEEecCCCCc-CCchhHHHHHHHhhCCCceEEEEEEecC
Confidence 5899998889997 7999999999999998866677777654
No 272
>PRK05993 short chain dehydrogenase; Provisional
Probab=22.77 E-value=1.1e+02 Score=30.34 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=24.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|+++|+- ..||+| ..+++.|+++|++|.++..+
T Consensus 4 ~k~vlItG------asggiG---~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITG------CSSGIG---AYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 45556663 247777 55788899999999888643
No 273
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=22.75 E-value=2.3e+02 Score=23.70 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=28.0
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCC---CeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARG---HRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~G---heV~Vitp~ 194 (542)
|||+++... .|+. .........++..+...| ++|.|+.-.
T Consensus 1 k~v~~i~~~-~p~~--~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPYD--DERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TTT--BSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCCC--CHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 688888764 3531 333677888888889999 999999743
No 274
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=22.70 E-value=1e+02 Score=29.68 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=19.1
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||++ ..+++.|.++|++|.+++..
T Consensus 11 g~lG---~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 11 SGIG---LAIALALAAAGANVVVNDLG 34 (255)
T ss_pred chHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5555 68889999999998888754
No 275
>PRK05884 short chain dehydrogenase; Provisional
Probab=22.66 E-value=1.3e+02 Score=28.77 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=23.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||+++... .||++ ..+++.|.++|++|.++..+
T Consensus 1 m~vlItGa-------s~giG---~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 1 VEVLVTGG-------DTDLG---RTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred CeEEEEeC-------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 57665542 36666 66888899999999888643
No 276
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=22.33 E-value=1.3e+02 Score=31.98 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=27.8
Q ss_pred CceEEEEEecccCCCcCCChHhHH--HhHHHHHHHHCCCeEEEEE
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDV--CGSLPVALAARGHRVMVVS 192 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~--v~~La~~L~~~GheV~Vit 192 (542)
.+++|+-|+.. -||+|.. +.+|+.+|+++|.+|.+|=
T Consensus 104 ~~~~vIai~n~------KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 104 VFPPVIGVAAH------KGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCCeEEEEECC------CCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 34566655542 4888765 6899999999999999993
No 277
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=22.27 E-value=1.4e+02 Score=27.53 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=28.8
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecC
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRY 195 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~ 195 (542)
.+||+++.. +-.+++..+...+++.|.+|++++|..
T Consensus 2 gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 467887762 225688999999999999999999873
No 278
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=21.96 E-value=1.6e+02 Score=28.22 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=33.5
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||+.|+-. |+. .|-....+...++++.+.|.||.++...
T Consensus 1 mki~~I~gs--~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~ 40 (207)
T COG0655 1 MKILGINGS--PRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLP 40 (207)
T ss_pred CeeeEEEec--CCC-CCcHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 788888753 543 6999999999999999999999999754
No 279
>PRK08655 prephenate dehydrogenase; Provisional
Probab=21.77 E-value=1.1e+02 Score=33.20 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=23.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|||+++. |.+.+-..+++.|.+.|++|+++...
T Consensus 1 MkI~IIG----------G~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 1 MKISIIG----------GTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred CEEEEEe----------cCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6777763 33344467888888999999888754
No 280
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.74 E-value=2.8e+02 Score=27.56 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=8.9
Q ss_pred HHHHhcCceeecChhh
Q 009139 378 GAIVTADRLLTVSKGY 393 (542)
Q Consensus 378 ~~l~~ad~Vi~vS~~~ 393 (542)
.++..||.+++-+..+
T Consensus 57 ~~l~~ad~i~~DG~gv 72 (243)
T PRK03692 57 ELINAAEYKYADGISV 72 (243)
T ss_pred HHHHhCCEEecCCHHH
Confidence 3455666666655443
No 281
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.72 E-value=1.3e+02 Score=28.55 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=18.1
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||++ ..|++.|.++||+|++++..
T Consensus 16 g~iG---~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 16 RGLG---RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred chHH---HHHHHHHHHCCCeEEEEeCC
Confidence 5555 67888889999999776643
No 282
>PRK08309 short chain dehydrogenase; Provisional
Probab=21.67 E-value=1.4e+02 Score=27.95 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=19.0
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
||.+ ....+++.|+++|++|.+++.
T Consensus 7 GGtG-~gg~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 7 GGTG-MLKRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CcCH-HHHHHHHHHHHCcCEEEEEEC
Confidence 4443 345699999999999998864
No 283
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=21.15 E-value=1.3e+02 Score=28.80 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.2
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
||.+-.-..+++.|.++|++|.++...
T Consensus 9 G~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 9 GAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 333344477899999999998777643
No 284
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.12 E-value=2.1e+02 Score=26.63 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=8.2
Q ss_pred HHhcCceeecChhhH
Q 009139 380 IVTADRLLTVSKGYS 394 (542)
Q Consensus 380 l~~ad~Vi~vS~~~~ 394 (542)
+..||.+++-+..+.
T Consensus 3 ~~~adlv~~DG~~i~ 17 (172)
T PF03808_consen 3 LNSADLVLPDGMPIV 17 (172)
T ss_pred HHhCCEEecCCHHHH
Confidence 345666666555543
No 285
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.05 E-value=1.4e+02 Score=30.39 Aligned_cols=34 Identities=35% Similarity=0.375 Sum_probs=25.5
Q ss_pred CceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 150 VSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 150 ~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
..|||+++.. |- +-..+++.|.+.||+|+++...
T Consensus 3 ~~m~I~iiG~--------G~---~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGA--------GA---WGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECc--------cH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 3589998763 33 3367888899999999988754
No 286
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=20.93 E-value=1.7e+02 Score=29.64 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=29.7
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
|||+++.-...+.. --.=....+++++|.+.||+|.++..
T Consensus 1 ~~v~v~~gg~s~e~--~~sl~s~~~i~~al~~~g~~~~~i~~ 40 (299)
T PRK14571 1 MRVALLMGGVSRER--EISLRSGERVKKALEKLGYEVTVFDV 40 (299)
T ss_pred CeEEEEeCCCCCCc--cchHHHHHHHHHHHHHcCCeEEEEcc
Confidence 78998876655522 22235678999999999999999953
No 287
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=20.91 E-value=1.6e+02 Score=28.07 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=26.1
Q ss_pred eEEEEEecccCCCcCCCh-HhHHHhHHHHHHHH-CCCeEEEEEec
Q 009139 152 YNIVFVTAEAAPYSKTGG-LGDVCGSLPVALAA-RGHRVMVVSPR 194 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GG-l~~~v~~La~~L~~-~GheV~Vitp~ 194 (542)
+||++-.+ || ......+|.+.|.+ .|++|.|++..
T Consensus 2 k~IllgVT--------Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGIS--------GASGAIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEE--------CHHHHHHHHHHHHHHHhhcCCeEEEEECH
Confidence 56766442 44 45668899999999 59999999855
No 288
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.78 E-value=3.4e+02 Score=22.82 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHhhhcCCcEEEEEe-cCchhhHHHHHHHHHHcCCCEEEEccCChhhhhh
Q 009139 481 KGIDLIRLAAPEILADDIQFVMLG-SGDPQFESWMRDTEATYKDKYRGWVGFNVPISHR 538 (542)
Q Consensus 481 KGid~LieA~~~L~~~dv~LVIvG-~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~ 538 (542)
.|....++++.+ ..+++||+- +-++...+.+..+++.+...+..+.|-.++|.+.
T Consensus 19 ~G~~~v~kai~~---gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a 74 (99)
T PRK01018 19 LGSKRTIKAIKL---GKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTL 74 (99)
T ss_pred EcHHHHHHHHHc---CCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHH
Confidence 366666666643 467777765 4456778888999888876665555666666553
No 289
>PLN02686 cinnamoyl-CoA reductase
Probab=20.68 E-value=1.6e+02 Score=30.93 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=20.1
Q ss_pred ChHhHHHhHHHHHHHHCCCeEEEEEe
Q 009139 168 GGLGDVCGSLPVALAARGHRVMVVSP 193 (542)
Q Consensus 168 GGl~~~v~~La~~L~~~GheV~Vitp 193 (542)
||.+-.=..|++.|.++||+|.++..
T Consensus 60 GatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 60 GGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 55555557888999999999988754
No 290
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=20.65 E-value=1.3e+02 Score=31.29 Aligned_cols=44 Identities=30% Similarity=0.365 Sum_probs=33.7
Q ss_pred CCceEEEEEecccCCCcCCChHhH--HHhHHHHHHHHCCCeEEEEEecCCC
Q 009139 149 RVSYNIVFVTAEAAPYSKTGGLGD--VCGSLPVALAARGHRVMVVSPRYFN 197 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~~~GGl~~--~v~~La~~L~~~GheV~Vitp~~~~ 197 (542)
+.+..|+.|.. ..+||.|. ++..|++.|.++|++|.|++..|+.
T Consensus 32 ~~~vpVIsVGN-----ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 32 RLPVPVISVGN-----LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred CCCCcEEEEcc-----cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 34455666654 24677775 6889999999999999999998865
No 291
>PRK00211 sulfur relay protein TusC; Validated
Probab=20.58 E-value=1.9e+02 Score=25.32 Aligned_cols=41 Identities=22% Similarity=0.086 Sum_probs=29.2
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+|||+++... .||. .-.+.-..+++-+++..+++|.|+-..
T Consensus 1 M~ki~~i~~~-~Pyg--~~~~~eaLd~ala~~a~~~~v~vff~~ 41 (119)
T PRK00211 1 MKRIAFVFRQ-APHG--TASGREGLDALLATSAFTEDIGVFFID 41 (119)
T ss_pred CceEEEEecC-CCCC--CHHHHHHHHHHHHHhcccCCeeEEEEh
Confidence 3578988865 6752 335555666788888888999999754
No 292
>PRK04155 chaperone protein HchA; Provisional
Probab=20.40 E-value=2.9e+02 Score=28.20 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=28.0
Q ss_pred CCceEEEEEecccCCCc-CCCh---Hh---HHHhHHHHHHHHCCCeEEEEEec
Q 009139 149 RVSYNIVFVTAEAAPYS-KTGG---LG---DVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 149 ~~~MkIl~Vt~e~~P~~-~~GG---l~---~~v~~La~~L~~~GheV~Vitp~ 194 (542)
+..+|||||.+...-.. ..|- .| .=+..-...|.+.|++|+++++.
T Consensus 47 ~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 47 RGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred CCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecC
Confidence 34459999987643221 1122 12 22333356788899999999985
No 293
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.40 E-value=3.3e+02 Score=25.88 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=23.2
Q ss_pred eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCC--eEEEEEecC
Q 009139 152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGH--RVMVVSPRY 195 (542)
Q Consensus 152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~Gh--eV~Vitp~~ 195 (542)
|||+++++ |-+.....+.+++.+.+. +|.++.++.
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~ 37 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISNK 37 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEECC
Confidence 68888873 334566788888877655 666655553
No 294
>PRK12367 short chain dehydrogenase; Provisional
Probab=20.38 E-value=1.3e+02 Score=29.56 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=23.8
Q ss_pred EEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 153 kIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
|.++|+- ..||+| ..+++.|+++|++|.++..+
T Consensus 15 k~~lITG------as~gIG---~ala~~l~~~G~~Vi~~~r~ 47 (245)
T PRK12367 15 KRIGITG------ASGALG---KALTKAFRAKGAKVIGLTHS 47 (245)
T ss_pred CEEEEEc------CCcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 5556663 246776 67788899999999887643
No 295
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.02 E-value=1.1e+02 Score=32.27 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.0
Q ss_pred ceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEec
Q 009139 151 SYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPR 194 (542)
Q Consensus 151 ~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~ 194 (542)
.+||++| ||+|.+=..+++.|.+.||+|+++...
T Consensus 98 ~~~I~Ii----------GG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIV----------GGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEE----------cCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4678765 566666689999999999999999753
Done!