BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009140
         (542 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WIJ|A Chain A, Solution Structure Of The Dna-Binding Domain Of Ethylene-
           Insensitive3-Like3
          Length = 140

 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 99/129 (76%), Gaps = 1/129 (0%)

Query: 176 LQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAXXXXXXXXXXXXXQLGLPKDLGPPPY 235
           LQ+LQD TLGSLLS+LMQHCDPPQR++PLEKG               +LGLPK   PP Y
Sbjct: 12  LQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQSPP-Y 70

Query: 236 KKPHDLKKAWKVSVLTAVIKHMFPDIAKIRKLVRQSKCLQDKMTAKESATWLAVINQEEA 295
           +KPHDLKK WKV VLTAVI HM PDIAKI++ VRQSKCLQDKMTAKESA WLAV+NQEE+
Sbjct: 71  RKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEES 130

Query: 296 LSRKLYPDS 304
           L ++  P S
Sbjct: 131 LIQQSGPSS 139


>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
 pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
 pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
 pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
          Length = 559

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 96  GILKYMLKMMEV-CKAQGFVYGIIPEKGKPVSGASD-NLRAWWKEKVRFDRN 145
           G L  M+K++E+ C     VYG+ P+KG  + G SD +L  W+ +  + + N
Sbjct: 411 GNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYN 462


>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
           (Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
           At 1.90 A Resolution
          Length = 248

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 395 DQKIYTCEFPQCPYGDYRLGFLERSSRNNHQLNCPYRHNSSQGFGMPNFQVNNDQTVAFS 454
           + KI T +F   P+     G L      NH LNC   H S +GFG+     +N  T   S
Sbjct: 5   ENKIGTYQFVAEPFHVDFNGRLTXGVLGNHLLNCAGFHASDRGFGIATLNEDN-YTWVLS 63

Query: 455 R 455
           R
Sbjct: 64  R 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,774,297
Number of Sequences: 62578
Number of extensions: 555070
Number of successful extensions: 1014
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 6
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)