Query 009140
Match_columns 542
No_of_seqs 94 out of 120
Neff 2.5
Searched_HMMs 46136
Date Thu Mar 28 20:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 100.0 1E-148 2E-153 1150.8 24.9 302 31-335 24-334 (599)
2 PF04873 EIN3: Ethylene insens 100.0 4E-117 8E-122 885.8 1.5 347 47-426 1-354 (354)
3 PF11001 DUF2841: Protein of u 97.1 0.00098 2.1E-08 60.7 5.7 82 175-272 16-103 (126)
4 PF00843 Arena_nucleocap: Aren 38.3 24 0.00052 39.2 2.6 159 95-289 269-486 (533)
5 KOG3263 Nucleic acid binding p 38.2 19 0.00041 35.7 1.7 22 100-128 145-166 (196)
6 KOG4215 Hepatocyte nuclear fac 36.7 7.8 0.00017 41.9 -1.2 24 410-433 40-63 (432)
7 PHA02767 hypothetical protein; 36.3 28 0.0006 31.3 2.2 26 80-105 43-68 (101)
8 PF07440 Caerin_1: Caerin 1 pr 27.5 31 0.00066 24.4 0.9 15 247-261 3-17 (24)
9 PF11628 TCR_zetazeta: T-cell 24.7 16 0.00035 27.5 -1.0 6 113-118 13-18 (33)
10 COG2091 Sfp Phosphopantetheiny 22.6 81 0.0018 31.4 3.1 36 88-126 41-78 (223)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=100.00 E-value=9.5e-149 Score=1150.78 Aligned_cols=302 Identities=66% Similarity=1.119 Sum_probs=281.7
Q ss_pred ccccccccCCccCCCHHHHHHhhhhhhHhHHHhhhhccchhhh--hhhhccccHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 009140 31 QETAAEEDYSDEEMDVDELERRMWRDRMLLKKLKEQSKSKECV--DSAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVC 108 (542)
Q Consensus 31 ~~~~~e~~~sdeei~~eeLerRmWkDr~~Lkrlke~~~~~~~~--~~~k~~~~~eqarRKkMsRAQDgILkyMlKmMEvC 108 (542)
.++++|+|+||||||+||||||||||||+||||||++|..+.. +..|+++++||||||||+|||||||||||||||||
T Consensus 24 c~~~~~~~~sdeei~~~el~rrmwkd~~~l~rlke~~~~~~~~~~e~~~~~~~~~~arrkkm~raqdgilkymlk~me~c 103 (599)
T PLN03109 24 CDNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEVC 103 (599)
T ss_pred cCCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998875544 36788999999999999999999999999999999
Q ss_pred hhccceeeecCCCCcccCCCChhhHHHHhhhhcccccchhhhhhhhhhhhccCCCCCCCCCCCCcchhhhcchhhhhhHH
Q 009140 109 KAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAILGKNEDCGSVVSTPHSLQELQDTTLGSLL 188 (542)
Q Consensus 109 ~AqGFVYGIIpekGKPvsGaSDnLR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~L~dLqDtTLGSLL 188 (542)
|||||||||||||||||||||||||+|||||||||||||||||||++||++++.++.... +++|+|+|||||||||||
T Consensus 104 ~a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~~~~--~~~~~l~~lqd~tLgsll 181 (599)
T PLN03109 104 KARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGN--NSQHSLQDLQDATLGSLL 181 (599)
T ss_pred hhcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhcccccccccCCc--ccHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765553 899999999999999999
Q ss_pred HHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhccCcCHHHHHHHH
Q 009140 189 SALMQHCDPPQRRFPLEKGVAPPWWPNGNEEWWPQLGLPKDLGPPPYKKPHDLKKAWKVSVLTAVIKHMFPDIAKIRKLV 268 (542)
Q Consensus 189 SaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKawKV~VLtAVIKHmsPd~~kir~lV 268 (542)
|||||||+|||||||||||+||||||||+|+||+++|++++++ |||||||||||||||+|||||||||||||+|||+||
T Consensus 182 salmqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~~-pPykkphdLkK~wKv~vl~avikhmsPd~~kir~~v 260 (599)
T PLN03109 182 SSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDFDKIRRHV 260 (599)
T ss_pred HHHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCCC-CCCCCchhhhhHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred hhhccchhhhhhHhHhhHHHHHhhHHHHhhhcCCCCC-------CCCCCCCCCcccccCCCCccccCcccccch
Q 009140 269 RQSKCLQDKMTAKESATWLAVINQEEALSRKLYPDSC-------PPVSAGGSGSFIISDSSDYDVEGVEDDRNV 335 (542)
Q Consensus 269 rqSkcLQdKmTakEs~tW~~vl~qEE~l~~~l~p~~~-------~p~s~~g~g~~~~~~~~eYDVdg~e~~~~~ 335 (542)
|||||||||||||||+||++||+|||+|++++..++. |..+.++....++|+++||||||+||.+..
T Consensus 261 r~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~s~DNGtS~ITe~P~g~~~~rk~~~~SSdsdYDVDg~eD~~gS 334 (599)
T PLN03109 261 RQSKCLQDKMTAKESLIWLGVLNREESLIRQPSSDNGTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPGS 334 (599)
T ss_pred HhchhHHhhhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCCCccccCCCCCcCCCcccccccccCCCCC
Confidence 9999999999999999999999999999999877754 232345555678899999999999998763
No 2
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=100.00 E-value=3.8e-117 Score=885.75 Aligned_cols=347 Identities=43% Similarity=0.771 Sum_probs=95.9
Q ss_pred HHHHHhhhhhhHhHHHhhhhccc----hhh-hhhhhccccHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccceeeecCCC
Q 009140 47 DELERRMWRDRMLLKKLKEQSKS----KEC-VDSAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEK 121 (542)
Q Consensus 47 eeLerRmWkDr~~Lkrlke~~~~----~~~-~~~~k~~~~~eqarRKkMsRAQDgILkyMlKmMEvC~AqGFVYGIIpek 121 (542)
|||++|||||+|+|+||++++.. ++. ....|..+..||+|||+|+||||||||||+||||||||+||||||||++
T Consensus 1 EElkk~~~~dq~~~r~~~~r~~~~~~~~e~a~~~~k~~~~~eq~~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~ 80 (354)
T PF04873_consen 1 EELKKRMWKDQMPVRRLHSRKLQLMEDQEPATGAKKSNKPNEQIRKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSS 80 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhhhccChhhcchHHHHhhcccccccccccccccccCCcHHHHHhhhhhhhhhHHHHhhccccccccCceeeecCCCCC
Confidence 79999999999999999997554 222 2333567889999999999999999999999999999999999999999
Q ss_pred CcccCCCChhhHHHHhhhhcccccchhhhhhhhhhhhccCCCCCCCC-CCCCcchhhhcchhhhhhHHHHhhhcCCCCcc
Q 009140 122 GKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAILGKNEDCGS-VVSTPHSLQELQDTTLGSLLSALMQHCDPPQR 200 (542)
Q Consensus 122 GKPvsGaSDnLR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~-~~~~~h~L~dLqDtTLGSLLSaLmqhC~PPQR 200 (542)
||||+|+|||||+||||+|+||+|||+||+||++++.+.+...++.. .....|+|++|||||||||||||||||+||||
T Consensus 81 ~k~~~~~s~slr~wwke~v~~~~ng~~~vs~~~~~~l~ls~~~~lq~~rs~~~~sl~~vpDTd~gSLL~a~~q~~~~p~~ 160 (354)
T PF04873_consen 81 GKPVEGVSPSLRAWWKEEVEFDRNGPIQVSKYDPKDLVLSGERGLQTERSSESTSLSLVPDTDLGSLLSALMQHCTPPQR 160 (354)
T ss_dssp -------------------------------------------------------STTS-HHHHHHHHHHHSSSSSS-TT
T ss_pred CCccCCcCCcccchhhhhhhcCcccccccCCcchhhhcccCCCCcccccccccccccccCCcccccccccccccCCCCcc
Confidence 99999999999999999999999999999999999999888777644 57899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhccCcCHHHHHHHHhhhccchhhhhh
Q 009140 201 RFPLEKGVAPPWWPNGNEEWWPQLGLPKDLGPPPYKKPHDLKKAWKVSVLTAVIKHMFPDIAKIRKLVRQSKCLQDKMTA 280 (542)
Q Consensus 201 rfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKawKV~VLtAVIKHmsPd~~kir~lVrqSkcLQdKmTa 280 (542)
+|||++|++|||||||+|.||+++|+++++||||||+||||||||||+||+||||||+|+|.+||++|++|+|||+|||+
T Consensus 161 ~~~~~~~~~~Pwwp~gkE~~~~~~g~s~~~~~~~~k~p~~lkk~~k~~~L~~~ikH~~~~~~~me~seldtq~LQnK~Sk 240 (354)
T PF04873_consen 161 CFPLEKGIEPPWWPTGKELWWGELGCSKDTGPPPYKKPHDLKKAWKVSVLRAEIKHMSPTFDEMEESELDTQYLQNKMSK 240 (354)
T ss_dssp S--TTT--HHHH---S--HHHHHHT--TT--------GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--S
T ss_pred CcccccccCCCCCCCCccccccccCCcCCCCCCCccChHHhhhcccccchhhhhccCCcchHHHHHhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhHHHHHhhHHHHhhhcCCCCCCCCCCCCCCcccccCCCCccccCcccccchhhhhcCCcCcccccccccccccccC
Q 009140 281 KESATWLAVINQEEALSRKLYPDSCPPVSAGGSGSFIISDSSDYDVEGVEDDRNVEVEEIKPRDVNLFNMGAMGRDRLMM 360 (542)
Q Consensus 281 kEs~tW~~vl~qEE~l~~~l~p~~~~p~s~~g~g~~~~~~~~eYDVdg~e~~~~~~~~~~kp~~~~~~n~g~~~~~~~~~ 360 (542)
+||.||+++++|||++++.++++. .....++..+.++.+.+|||+|.++.....++.....
T Consensus 241 rqSfa~~s~~~qEEk~~~~v~a~s--~S~~kqsp~vt~e~~qeee~qG~~Es~i~~vq~~~~~----------------- 301 (354)
T PF04873_consen 241 RQSFAWFSNPGQEEKECRTVCAHS--RSLRKQSPKVTLECEQEEEVQGKEESKIKHVQAVSAT----------------- 301 (354)
T ss_dssp HHHHHHHHHHTTTTT-S---------------------------------------------------------------
T ss_pred hhhhhhhcccCchhhhccccCCCc--chhhccCCCccccccchhhccCccccccccccccccc-----------------
Confidence 999999999999999999999982 2224455666777888999999877654433221110
Q ss_pred CCCCCCCccccccccchhhhhhcCCCccccc-cccCCcccccCCCCCCCCCCCCCcccccccCcccc
Q 009140 361 TPPMVPQIKGELVETNSDFIQKRKQPADQSH-LMMDQKIYTCEFPQCPYGDYRLGFLERSSRNNHQL 426 (542)
Q Consensus 361 ~~~~~~~~k~e~~~~~~df~~KRk~~~~e~~-~~mdqkvYTCen~qCP~Sd~~~GFlDrnsR~nHq~ 426 (542)
.+..++.||+....+.. ..+...+|+|+++|||+|+..+||.|+|.|++|+|
T Consensus 302 --------------~~~~~v~Qrkrkpgd~a~~s~~~~srlCqssq~~gsE~eli~~Dkn~isqn~y 354 (354)
T PF04873_consen 302 --------------NGFPVVCQRKRKPGDYAKCSIKGVSRLCQSSQCPGSETELIFADKNGISQNPY 354 (354)
T ss_dssp -------------------------------------------------------------------
T ss_pred --------------cCCccccccCCCCCccccccccccccCCccccCCCcccccCcCCccccccCCC
Confidence 25567778873233333 22233479999999999999999999999999997
No 3
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=97.09 E-value=0.00098 Score=60.68 Aligned_cols=82 Identities=24% Similarity=0.629 Sum_probs=65.4
Q ss_pred hhhhcchhhhhhHHHHhhhcCCC-CccCCCCCCC--CCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhhhhhhhh
Q 009140 175 SLQELQDTTLGSLLSALMQHCDP-PQRRFPLEKG--VAPPWWPNGNEEWWPQLGLPKDLGPPPYKKPHDLKKAWKVSVLT 251 (542)
Q Consensus 175 ~L~dLqDtTLGSLLSaLmqhC~P-PQRrfPLekG--~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKawKV~VLt 251 (542)
.+..||-+.-=.+..|-..-=.| -|.+||-.+| ..|+|||.+ .+++-|.-|+|.-.|.+|+
T Consensus 16 ~F~~lqQ~~Ck~IAKawIK~IEPkKQ~~~PY~~g~~tkP~WWP~~----------------V~HkEPDHL~K~eRi~LLi 79 (126)
T PF11001_consen 16 AFKALQQVNCKQIAKAWIKVIEPKKQAKYPYNGGDKTKPPWWPED----------------VRHKEPDHLKKPERIRLLI 79 (126)
T ss_pred HHHHcChhHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC----------------CCcCCCCccCHHHHHHHHH
Confidence 35567777777777777766666 4899999998 499999944 6899999999999999999
Q ss_pred hhhhccCc---CHHHHHHHHhhhc
Q 009140 252 AVIKHMFP---DIAKIRKLVRQSK 272 (542)
Q Consensus 252 AVIKHmsP---d~~kir~lVrqSk 272 (542)
.+++.+.+ ..++++.+...+.
T Consensus 80 hIlr~l~~~~~t~~kL~~a~~~~~ 103 (126)
T PF11001_consen 80 HILRNLRPHGITVDKLEEATQDVR 103 (126)
T ss_pred HHHHhccccCCcHHHHHHHHHHHH
Confidence 99998777 6677776665543
No 4
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=38.35 E-value=24 Score=39.20 Aligned_cols=159 Identities=26% Similarity=0.366 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHhhccceeeecC----------------CCCcccCCCChhh--HHHHhhhhcccccchhhhhhhhhh
Q 009140 95 DGILKYMLKMMEVCKAQGFVYGIIP----------------EKGKPVSGASDNL--RAWWKEKVRFDRNGPAAIAKYQAD 156 (542)
Q Consensus 95 DgILkyMlKmMEvC~AqGFVYGIIp----------------ekGKPvsGaSDnL--R~WWKekVrFDrngPaAiaky~~~ 156 (542)
+.|+|-+|+ |=+.-|..-+..| -.|=|-.||--.| |+|=---|-|+...+..-
T Consensus 269 ~~iiK~~L~---vK~~e~MFv~~~pG~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAWDNT~VDl~~~p~~~~------ 339 (533)
T PF00843_consen 269 STIIKAVLK---VKRREGMFVSETPGQRNPYENLLYKLCLSGEGWPYIGSRSQIKGRAWDNTTVDLTGKPDSGP------ 339 (533)
T ss_dssp HHHHHHHHH---HHHHHT----SSSSS--HHHHHHHHHHH-SSB-TTTSBGTT--S-HHHHEEEE---------------
T ss_pred HHHHHHHHH---HHHhcCcccCCCCCCCCcHHHHHHHHhcCCCCCCceeecccccccccCCcEEeCCCCCCCCC------
Confidence 457776654 4455554445444 3577777776666 889888888888765111
Q ss_pred hhccCCCCCCCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCC----
Q 009140 157 HAILGKNEDCGSVVSTPHSLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPNGNEEWWPQLGLPKDLGP---- 232 (542)
Q Consensus 157 ~~~~~~~~~~~~~~~~~h~L~dLqDtTLGSLLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gp---- 232 (542)
..|..+ .....+..|.+.|-.. |...|..-||-- ..|=.=.|-|.|+.-
T Consensus 340 -~~p~~n----g~~~~l~~Lt~~qe~~----lk~am~~Ldp~~------------------ttWiDIEG~p~DPVElAiy 392 (533)
T PF00843_consen 340 -PPPVRN----GGNPRLSGLTESQEMQ----LKDAMEKLDPNA------------------TTWIDIEGPPNDPVELAIY 392 (533)
T ss_dssp -----------------SSS-HHHHHH----HHHHHCCS-TTS-------------------EEEEEESETTSESEEEEE
T ss_pred -CCccCC----CCCCCCCCCCHHHHHH----HHHHHHhCCCCC------------------CeeEecCCCCCCCeEEEEe
Confidence 112222 1223334455555544 444555555532 234444565555421
Q ss_pred --------CCCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHhh-----hccch
Q 009140 233 --------PPYKKPHDLKKAW-----------------KVSVLTAVIKHMFPDI-------AKIRKLVRQ-----SKCLQ 275 (542)
Q Consensus 233 --------PPYkKPHdLKKaw-----------------KV~VLtAVIKHmsPd~-------~kir~lVrq-----SkcLQ 275 (542)
-=||+|||.|-.= .-|+++|||+|+-++. +.||+|.-. =|-+-
T Consensus 393 QP~sg~YiHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~vi~~LP~~MVlT~QGsDDIrkLld~hGRrDiKlvD 472 (533)
T PF00843_consen 393 QPSSGNYIHCYREPHDEKQFKNQSKYSHGILLKDLENAQPGLTSAVIELLPKNMVLTCQGSDDIRKLLDMHGRRDIKLVD 472 (533)
T ss_dssp ETTTTEEEEEE---S-HHHHHHHHHHTT-B-GGGCTTB-TTHHHHHHHHS-TT-EEEESSHHHHHHHHHCTT-TTSEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccccccccccHHHHhhhccchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCCcceEEE
Confidence 1399999987431 2479999999998875 789988743 34555
Q ss_pred hhhhhHhHhhHHHH
Q 009140 276 DKMTAKESATWLAV 289 (542)
Q Consensus 276 dKmTakEs~tW~~v 289 (542)
=|||+.+|......
T Consensus 473 V~lt~eqaR~FEd~ 486 (533)
T PF00843_consen 473 VKLTSEQARKFEDQ 486 (533)
T ss_dssp ----HHHHTTTHHH
T ss_pred eecCHHHHHHHHHH
Confidence 68999988765443
No 5
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=38.18 E-value=19 Score=35.71 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhccceeeecCCCCcccCCC
Q 009140 100 YMLKMMEVCKAQGFVYGIIPEKGKPVSGA 128 (542)
Q Consensus 100 yMlKmMEvC~AqGFVYGIIpekGKPvsGa 128 (542)
-|+|||. |+ |+=--|||+|.|+
T Consensus 145 EMmk~MG------f~-gFDtTkgkkv~g~ 166 (196)
T KOG3263|consen 145 EMMKIMG------FS-GFDTTKGKKVGGS 166 (196)
T ss_pred HHHHHhC------cC-cccCCCCccccCc
Confidence 5888885 55 6778999999886
No 6
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=36.71 E-value=7.8 Score=41.94 Aligned_cols=24 Identities=42% Similarity=0.751 Sum_probs=21.2
Q ss_pred CCCCCcccccccCcccccCCCCCC
Q 009140 410 DYRLGFLERSSRNNHQLNCPYRHN 433 (542)
Q Consensus 410 d~~~GFlDrnsR~nHq~~C~yr~~ 433 (542)
|.+=||--|+.|.||||+|+|...
T Consensus 40 dGCKGFFRRSVrk~~~YtCRF~k~ 63 (432)
T KOG4215|consen 40 DGCKGFFRRSVRKNHQYTCRFNKQ 63 (432)
T ss_pred CcchHHHHHHHHhcceeeeecccc
Confidence 567899999999999999999843
No 7
>PHA02767 hypothetical protein; Provisional
Probab=36.28 E-value=28 Score=31.31 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=21.9
Q ss_pred ccHHHHHHhhhhhhhhhHHHHHHHHH
Q 009140 80 QSQEQARRKKMSRAQDGILKYMLKMM 105 (542)
Q Consensus 80 ~~~eqarRKkMsRAQDgILkyMlKmM 105 (542)
|.+=-.|.|.|..|-|.||||+||..
T Consensus 43 QIk~~~k~~~~EK~~~~I~kYl~~TF 68 (101)
T PHA02767 43 QIKINMKKKEYEKAGMSILKYLVHTF 68 (101)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHc
Confidence 34456788999999999999999864
No 8
>PF07440 Caerin_1: Caerin 1 protein; InterPro: IPR010000 This family consists of several caerin 1 proteins from Litoria species, Australian tree frogs. The caerin 1 peptides are among the most powerful of the broad-spectrum antibiotic amphibian peptides []. These peptides are excreted from amphibian skin, and can interact with and disrupt bacterial membranes, leading to the permeabilisation of the cell membrane. Caerin 1.1 forms a helix-bend-helix sturcture, where both helices are required for activity, as well as the bend region for flexibility.; GO: 0005576 extracellular region
Probab=27.54 E-value=31 Score=24.43 Aligned_cols=15 Identities=47% Similarity=0.804 Sum_probs=12.9
Q ss_pred hhhhhhhhhccCcCH
Q 009140 247 VSVLTAVIKHMFPDI 261 (542)
Q Consensus 247 V~VLtAVIKHmsPd~ 261 (542)
.+||.+|.||+.|..
T Consensus 3 ~~vlgsvakhvlphv 17 (24)
T PF07440_consen 3 FSVLGSVAKHVLPHV 17 (24)
T ss_pred HHHHHHHHHHhcccc
Confidence 589999999999865
No 9
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=24.73 E-value=16 Score=27.53 Aligned_cols=6 Identities=83% Similarity=1.802 Sum_probs=4.4
Q ss_pred ceeeec
Q 009140 113 FVYGII 118 (542)
Q Consensus 113 FVYGII 118 (542)
|+||||
T Consensus 13 ~iYgii 18 (33)
T PF11628_consen 13 FIYGII 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 677776
No 10
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=22.63 E-value=81 Score=31.41 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=30.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhcc--ceeeecCCCCcccC
Q 009140 88 KKMSRAQDGILKYMLKMMEVCKAQG--FVYGIIPEKGKPVS 126 (542)
Q Consensus 88 KkMsRAQDgILkyMlKmMEvC~AqG--FVYGIIpekGKPvs 126 (542)
+.|-.|.+++|++.|+.|--|..+. |.|| +.|||.=
T Consensus 41 r~r~l~~~~~lr~lls~~l~~~~~~~~~~~~---~~GKP~~ 78 (223)
T COG2091 41 RERFLASRLLLRALLSIALGLDPELLQISYG---ERGKPYL 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceeeEC---CCCCccc
Confidence 6788999999999999999998776 4444 7999964
Done!