BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009143
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 9/129 (6%)
Query: 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL---------NGDISSAFAY 318
+D K GD +AL L+++ + +Q YNVL+ L N +S F
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 319 FCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378
F QM+ +P+ T+ + + A + G+ P SY + G C
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Query: 379 HGDIVKARE 387
GD KA E
Sbjct: 153 KGDADKAYE 161
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 142 RKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201
++MI VP+ T D E A ++++M P +Y + G+CR
Sbjct: 94 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153
Query: 202 NELDKALHLFSTM 214
+ DKA + + M
Sbjct: 154 GDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 9/129 (6%)
Query: 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL---------NGDISSAFAY 318
+D K GD +AL L+++ + +Q YNVL+ L N +S F
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 319 FCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378
F Q + +P+ T+ + + A G+ P SY + G C
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 379 HGDIVKARE 387
GD KA E
Sbjct: 153 KGDADKAYE 161
>pdb|3IZ6|M Chain M, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 152
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 53 LNDIMSYVGDQCRSKTRHWFSNKDSDNEGN--PQAVFNALDLILKENLDRLKTMRDTGPV 110
++ +M+ V + + K WF N+ D + Q V NA+D+ L+++L+RLK +R+ +
Sbjct: 64 MDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGL 123
Query: 111 R 111
R
Sbjct: 124 R 124
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288
L +A K+G +A+++ + L D A + L ++Y+K GD +A+ +
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEA----WYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 289 QKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348
+ + ++ YN L N + GD A Y+ + L+ YN L N KQG D
Sbjct: 63 ELDPRSAEAWYN-LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-LGNAYYKQGDYD 120
Query: 349 EASHFY 354
EA +Y
Sbjct: 121 EAIEYY 126
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 267 LMDSYFKNGDKFQALALWNDMFQKNIQTD---IVAYNVLINGFCLNGDISSAFAYFCQML 323
L ++Y+K GD +A+ + +QK ++ D A+ L N + GD A Y+ + L
Sbjct: 15 LGNAYYKQGDYDEAI----EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 324 KRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354
+ YN L N KQG DEA +Y
Sbjct: 71 ELDPNNAEAWYN-LGNAYYKQGDYDEAIEYY 100
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 454 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP 513
L H L YD+ ++ Y + K H A N +EA+ FAK+ L A+ +
Sbjct: 86 LDHCSSILNKYDD--------NVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVV 137
Query: 514 FR---ILKKRYRRMKESDKAR 531
R L+ R R+ E DKAR
Sbjct: 138 SRELQALEARIRQKDEEDKAR 158
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 267 LMDSYFKNGDKFQALALWNDMFQKNIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQML 323
L ++Y+K GD +A+ + +QK ++ + A+ L N + GD A Y+ + L
Sbjct: 15 LGNAYYKQGDYDEAI----EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 324 KRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354
+ + + + L N KQG DEA +Y
Sbjct: 71 EL-YPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
>pdb|1ECR|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Dna
pdb|2EWJ|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Dna- Locked Form
pdb|2I05|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Tera Dna
pdb|2I06|A Chain A, Escherichia Coli Replication Terminator Protein (tus)
Complexed With Dna- Locked Form
Length = 309
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 26 FDSIKLNVARIFSNSRTCSDDDNLPCTLNDIMSYVGDQCRSKT----RHWFSNKDSDNEG 81
+ KL VAR+FS +D++ P ++ ++G+ +S RH F + S+N
Sbjct: 28 LEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRS 87
Query: 82 NPQAV 86
+ AV
Sbjct: 88 SKAAV 92
>pdb|3R8E|A Chain A, Crystal Structure Of A Hypothetical Sugar Kinase
(Chu_1875) From Cytophaga Hutchinsonii Atcc 33406 At
1.65 A Resolution
Length = 321
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 280 ALALWNDMFQKNIQTDIVAYNVL-INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNT 336
ALA+W D+ ++ + V +N L G IS AF YF LK+ L + TY T
Sbjct: 237 ALAVWADIGTIIGESLVNIVRVXDLNNILLGGGISGAFDYFVPNLKKAXLEHLPTYYT 294
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P+Q II +KAR +LLS+ K+ VP WN
Sbjct: 232 LDQLNHILGILG----SPEQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 275
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 276 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 306
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 234 LDQLNHILGILG----SPSQEDLNXIIN--------LKARNYLLSLPHKNKVP----WNR 277
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 278 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 308
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 238 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 281
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 282 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 312
>pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Recognition Sequence
pdb|1LWT|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Substrate Dna (Ca2+ Free)
Length = 454
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 203 ELDKALHLFSTMA-NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV 261
++ K ++L+S + NGIR N T N L A+ G L D VK + L+ D+
Sbjct: 259 QVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETF 318
Query: 262 ITSTILMDSY 271
+ I D Y
Sbjct: 319 LAGLIDSDGY 328
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 238 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 281
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 282 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 312
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 234 LDQLNHILGILG----SPSQEDLNXIIN--------LKARNYLLSLPHKNKVP----WNR 277
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 278 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 308
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 203 ELDKALHLFSTMA-NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV 261
++ K ++L+S + NGIR N T N L A+ G L D VK + L+ D+
Sbjct: 259 QVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETF 318
Query: 262 ITSTILMDSYFKNGDKFQA 280
+ I D Y + +A
Sbjct: 319 LAGLIDSDGYVTDEHGIKA 337
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 239 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 282
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 283 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 313
>pdb|1UM2|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 454
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 203 ELDKALHLFSTMA-NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV 261
++ K ++L+S + NGIR N T N L A+ G L D VK + L+ D+
Sbjct: 259 QVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETF 318
Query: 262 ITSTILMDSYFKNGDKFQA 280
+ I D Y + +A
Sbjct: 319 LAGLIDSDGYVTDEHGIKA 337
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 203 ELDKALHLFSTMA-NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV 261
++ K ++L+S + NGIR N T N L A+ G L D VK + L+ D+
Sbjct: 270 QVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETF 329
Query: 262 ITSTILMDSYFKNGDKFQA 280
+ I D Y + +A
Sbjct: 330 LAGLIDSDGYVTDEHGIKA 348
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 232 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 275
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 276 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 306
>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine
Mutation At Position 52
Length = 364
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 238 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 281
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 282 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 312
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 242 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 285
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 286 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 316
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 234 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 277
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 278 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 308
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 254 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 297
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 298 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 328
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 239 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 282
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 283 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 313
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 240 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 283
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 284 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 314
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 231 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 274
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 275 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 305
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 238 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 281
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 282 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 312
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 203 ELDKALHLFSTMA-NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV 261
++ K ++L+S + NGIR N T N L A+ G L D VK + L+ D+
Sbjct: 263 QVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETF 322
Query: 262 ITSTILMDSYFKNGDKFQA 280
+ I D Y + +A
Sbjct: 323 LAGLIDSDGYVTDEHGIKA 341
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 234 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 277
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 278 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 308
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 236 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 279
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 280 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 310
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 238 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 281
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 282 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 312
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 254 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 297
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 298 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 328
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 234 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 277
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 278 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 308
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 236 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 279
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 280 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 310
>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2
Length = 364
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV 406
LD+ +H G+L +P Q II +KAR +LLS+ K+ VP WN
Sbjct: 238 LDQLNHILGILG----SPSQEDLNCIIN--------LKARNYLLSLPHKNKVP----WNR 281
Query: 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442
+ S A + D ML+F + AL
Sbjct: 282 LFPNAD-----SKALDLLDKMLTFNPHKRIEVEQAL 312
>pdb|2ZKQ|MM Chain m, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 152
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 67 KTRHWFSNKDSD-NEGN-PQAVFNALDLILKENLDRLKTMR 105
K WF N+ D +G Q + N LD L+E+L+RLK +R
Sbjct: 78 KIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 368 SYKTIIQGL-----CIHGDI--VKAR-EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN 419
+Y I+QGL +H D+ V+ R EF+LS ++ E H V+ G GDL
Sbjct: 643 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 702
Query: 420 AF 421
AF
Sbjct: 703 AF 704
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 368 SYKTIIQGL-----CIHGDI--VKAR-EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN 419
+Y I+QGL +H D+ V+ R EF+LS ++ E H V+ G GDL
Sbjct: 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827
Query: 420 AF 421
AF
Sbjct: 828 AF 829
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 368 SYKTIIQGL-----CIHGDI--VKAR-EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN 419
+Y I+QGL +H D+ V+ R EF+LS ++ E H V+ G GDL
Sbjct: 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827
Query: 420 AF 421
AF
Sbjct: 828 AF 829
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 368 SYKTIIQGL-----CIHGDI--VKAR-EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN 419
+Y I+QGL +H D+ V+ R EF+LS ++ E H V+ G GDL
Sbjct: 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827
Query: 420 AF 421
AF
Sbjct: 828 AF 829
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,122,471
Number of Sequences: 62578
Number of extensions: 664407
Number of successful extensions: 1842
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1815
Number of HSP's gapped (non-prelim): 62
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)