Query 009143
Match_columns 542
No_of_seqs 814 out of 3263
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 20:56:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5E-65 1.1E-69 532.9 59.2 478 49-537 370-873 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.5E-63 1.4E-67 517.0 59.1 446 83-540 370-841 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.8E-60 1.3E-64 492.5 48.2 433 85-540 89-523 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.7E-60 1.9E-64 502.9 46.9 420 97-537 136-651 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-58 2.6E-63 482.7 46.0 453 63-540 101-557 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 8.7E-58 1.9E-62 487.5 47.7 417 98-540 269-686 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-27 4.5E-32 259.4 57.0 402 117-539 498-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-26 6.3E-31 250.3 55.9 405 116-541 463-867 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.9E-21 4.1E-26 190.7 35.9 303 125-434 42-351 (389)
10 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-19 3.4E-24 186.4 51.3 401 120-540 129-571 (615)
11 KOG4626 O-linked N-acetylgluco 99.9 1.4E-21 3E-26 183.0 32.2 386 117-527 115-506 (966)
12 PRK11447 cellulose synthase su 99.9 7.4E-20 1.6E-24 201.0 51.3 395 125-539 276-739 (1157)
13 PRK11788 tetratricopeptide rep 99.9 2.8E-21 6.1E-26 189.5 36.1 310 156-477 38-354 (389)
14 PRK11447 cellulose synthase su 99.9 4.4E-19 9.5E-24 195.0 56.1 404 116-540 179-700 (1157)
15 KOG4626 O-linked N-acetylgluco 99.9 5.3E-21 1.1E-25 179.1 34.6 399 120-541 84-486 (966)
16 PRK15174 Vi polysaccharide exp 99.9 9E-19 1.9E-23 180.2 45.9 334 120-470 44-381 (656)
17 PRK15174 Vi polysaccharide exp 99.9 1.4E-18 2.9E-23 178.9 45.4 359 129-506 16-382 (656)
18 PRK10049 pgaA outer membrane p 99.9 4.1E-18 9E-23 179.1 47.6 406 117-541 14-457 (765)
19 PRK09782 bacteriophage N4 rece 99.9 1.4E-17 3.1E-22 175.1 50.5 232 295-541 476-707 (987)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-17 2.6E-22 172.5 48.0 397 96-505 141-571 (615)
21 PRK14574 hmsH outer membrane p 99.8 8.1E-16 1.8E-20 158.8 50.2 432 88-540 40-513 (822)
22 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.6E-21 166.2 46.5 389 116-521 47-470 (765)
23 PRK14574 hmsH outer membrane p 99.8 5E-15 1.1E-19 153.0 49.3 400 121-539 38-478 (822)
24 KOG2002 TPR-containing nuclear 99.8 6.4E-16 1.4E-20 152.9 39.4 413 116-538 268-743 (1018)
25 PRK09782 bacteriophage N4 rece 99.8 7.6E-15 1.6E-19 154.8 50.0 156 374-541 517-673 (987)
26 KOG4422 Uncharacterized conser 99.8 3.5E-14 7.6E-19 128.2 40.5 408 118-541 116-591 (625)
27 KOG2002 TPR-containing nuclear 99.8 6.7E-15 1.5E-19 145.8 39.0 426 80-518 266-758 (1018)
28 KOG4422 Uncharacterized conser 99.8 1.5E-13 3.2E-18 124.3 39.2 380 115-522 204-607 (625)
29 COG2956 Predicted N-acetylgluc 99.7 1E-14 2.2E-19 127.1 29.2 302 82-395 35-347 (389)
30 TIGR00540 hemY_coli hemY prote 99.7 6.5E-14 1.4E-18 136.9 35.2 294 200-539 96-398 (409)
31 KOG0495 HAT repeat protein [RN 99.7 5.9E-12 1.3E-16 119.9 45.6 407 115-538 437-878 (913)
32 KOG1915 Cell cycle control pro 99.7 5E-12 1.1E-16 116.0 42.7 425 97-542 88-538 (677)
33 PRK10747 putative protoheme IX 99.7 1.8E-13 4E-18 132.9 34.7 292 201-539 97-389 (398)
34 KOG2076 RNA polymerase III tra 99.7 1.2E-12 2.5E-17 129.3 39.9 189 130-324 151-344 (895)
35 KOG2003 TPR repeat-containing 99.7 1E-13 2.2E-18 126.1 30.2 214 308-534 502-716 (840)
36 KOG2003 TPR repeat-containing 99.7 5.1E-13 1.1E-17 121.6 31.9 359 120-491 278-709 (840)
37 KOG0495 HAT repeat protein [RN 99.7 1.7E-11 3.6E-16 116.9 43.1 394 111-519 472-893 (913)
38 KOG2076 RNA polymerase III tra 99.7 3.4E-12 7.4E-17 126.1 39.6 327 95-428 152-510 (895)
39 PRK10747 putative protoheme IX 99.7 6.1E-13 1.3E-17 129.3 34.6 286 131-429 97-389 (398)
40 PF13429 TPR_15: Tetratricopep 99.7 9.8E-16 2.1E-20 142.3 12.9 262 123-393 13-275 (280)
41 COG2956 Predicted N-acetylgluc 99.6 1.2E-12 2.7E-17 114.3 30.0 292 200-505 47-347 (389)
42 TIGR00540 hemY_coli hemY prote 99.6 1.9E-12 4.2E-17 126.6 34.5 188 165-360 96-292 (409)
43 PF13429 TPR_15: Tetratricopep 99.6 2.9E-15 6.4E-20 139.1 13.5 262 158-429 13-276 (280)
44 KOG0547 Translocase of outer m 99.6 3.7E-11 8E-16 110.9 37.8 395 121-539 118-565 (606)
45 KOG1155 Anaphase-promoting com 99.6 8.4E-11 1.8E-15 107.9 38.3 162 332-503 331-493 (559)
46 KOG1126 DNA-binding cell divis 99.6 9.7E-13 2.1E-17 126.0 26.7 285 133-431 334-621 (638)
47 KOG1155 Anaphase-promoting com 99.6 9.1E-12 2E-16 114.1 30.5 256 128-394 237-494 (559)
48 COG3071 HemY Uncharacterized e 99.6 3.5E-11 7.5E-16 108.7 32.9 192 201-398 97-295 (400)
49 COG3071 HemY Uncharacterized e 99.6 4.1E-11 9E-16 108.2 33.0 286 166-469 97-389 (400)
50 KOG1915 Cell cycle control pro 99.6 8.4E-10 1.8E-14 101.7 40.3 410 116-541 71-501 (677)
51 KOG1126 DNA-binding cell divis 99.6 2.9E-12 6.2E-17 122.8 25.2 286 204-509 335-624 (638)
52 PRK12370 invasion protein regu 99.5 1.1E-10 2.3E-15 118.8 30.6 147 239-392 320-467 (553)
53 KOG1174 Anaphase-promoting com 99.4 1.7E-08 3.8E-13 91.6 39.1 307 220-541 191-501 (564)
54 PRK12370 invasion protein regu 99.4 9E-11 2E-15 119.3 28.1 266 152-430 255-535 (553)
55 TIGR02521 type_IV_pilW type IV 99.4 1.1E-10 2.5E-15 105.5 26.1 199 118-323 31-230 (234)
56 TIGR02521 type_IV_pilW type IV 99.4 1.4E-10 3.1E-15 104.8 26.6 200 153-358 31-230 (234)
57 KOG1173 Anaphase-promoting com 99.4 1.3E-09 2.8E-14 102.8 32.7 288 219-522 240-533 (611)
58 KOG2047 mRNA splicing factor [ 99.4 2.7E-08 5.8E-13 95.4 40.7 395 120-537 140-612 (835)
59 KOG1129 TPR repeat-containing 99.4 3.2E-11 6.9E-16 105.7 18.9 234 192-436 227-462 (478)
60 KOG1173 Anaphase-promoting com 99.4 8.3E-10 1.8E-14 104.1 28.4 284 151-445 242-531 (611)
61 KOG1156 N-terminal acetyltrans 99.4 5.1E-08 1.1E-12 93.8 39.8 371 117-507 74-470 (700)
62 KOG0547 Translocase of outer m 99.4 6.8E-09 1.5E-13 96.3 32.3 371 113-505 143-566 (606)
63 KOG1129 TPR repeat-containing 99.4 7.4E-11 1.6E-15 103.4 18.4 231 157-397 227-460 (478)
64 KOG4318 Bicoid mRNA stability 99.4 8.8E-10 1.9E-14 109.0 27.0 82 113-206 20-101 (1088)
65 KOG2047 mRNA splicing factor [ 99.4 1.8E-07 3.9E-12 89.9 41.4 379 117-503 168-613 (835)
66 KOG4162 Predicted calmodulin-b 99.4 2.1E-08 4.5E-13 98.3 35.9 409 114-541 319-784 (799)
67 KOG4318 Bicoid mRNA stability 99.3 5.6E-10 1.2E-14 110.3 25.0 254 139-416 11-286 (1088)
68 PF12569 NARP1: NMDA receptor- 99.3 6E-09 1.3E-13 102.5 32.5 292 196-504 12-333 (517)
69 KOG1156 N-terminal acetyltrans 99.3 7.7E-08 1.7E-12 92.6 38.5 84 451-537 381-465 (700)
70 PF12569 NARP1: NMDA receptor- 99.3 9.6E-09 2.1E-13 101.1 32.4 296 227-539 8-333 (517)
71 KOG3785 Uncharacterized conser 99.3 2.4E-08 5.2E-13 88.9 31.4 384 123-537 62-487 (557)
72 KOG1840 Kinesin light chain [C 99.3 3.5E-09 7.5E-14 102.9 28.7 245 223-503 199-477 (508)
73 KOG2376 Signal recognition par 99.3 7.7E-08 1.7E-12 91.6 36.6 406 97-536 27-516 (652)
74 KOG1174 Anaphase-promoting com 99.3 1.5E-07 3.2E-12 85.8 35.6 299 193-507 199-502 (564)
75 COG3063 PilF Tfp pilus assembl 99.3 5.2E-09 1.1E-13 87.9 24.0 206 120-334 37-243 (250)
76 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.5E-14 104.4 25.1 198 337-539 247-478 (508)
77 PF13041 PPR_2: PPR repeat fam 99.3 1E-11 2.2E-16 80.9 6.3 50 186-235 1-50 (50)
78 PF13041 PPR_2: PPR repeat fam 99.3 1.6E-11 3.6E-16 79.9 6.5 49 294-342 1-49 (50)
79 PRK11189 lipoprotein NlpI; Pro 99.2 1.5E-08 3.2E-13 94.4 27.0 225 203-440 41-274 (296)
80 COG3063 PilF Tfp pilus assembl 99.2 2.2E-08 4.7E-13 84.2 24.3 199 156-360 38-236 (250)
81 KOG3785 Uncharacterized conser 99.2 4.4E-07 9.6E-12 81.1 33.2 368 116-514 89-497 (557)
82 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 4E-12 90.5 34.3 304 117-429 5-335 (355)
83 PRK11189 lipoprotein NlpI; Pro 99.2 2.3E-08 4.9E-13 93.2 26.7 122 131-254 39-163 (296)
84 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 3.8E-12 90.6 33.4 200 153-359 6-214 (355)
85 KOG4340 Uncharacterized conser 99.1 4.1E-07 8.9E-12 79.4 27.7 293 120-427 12-336 (459)
86 KOG0548 Molecular co-chaperone 99.1 2.8E-07 6.1E-12 87.0 28.7 370 160-541 9-456 (539)
87 PRK04841 transcriptional regul 99.1 1.1E-06 2.4E-11 96.3 38.1 344 197-540 383-760 (903)
88 KOG0624 dsRNA-activated protei 99.1 7E-06 1.5E-10 73.3 36.0 304 116-430 36-370 (504)
89 KOG0624 dsRNA-activated protei 99.1 5.9E-07 1.3E-11 80.0 28.4 203 187-396 37-253 (504)
90 KOG4340 Uncharacterized conser 99.0 2.2E-07 4.9E-12 81.0 23.6 206 148-364 5-211 (459)
91 PF04733 Coatomer_E: Coatomer 99.0 2E-08 4.2E-13 92.2 18.0 150 269-429 110-264 (290)
92 KOG0548 Molecular co-chaperone 99.0 3.3E-06 7.3E-11 80.0 32.1 366 116-505 34-455 (539)
93 KOG4162 Predicted calmodulin-b 99.0 4.7E-06 1E-10 82.3 34.2 406 128-541 294-750 (799)
94 PRK04841 transcriptional regul 99.0 2.8E-06 6E-11 93.2 36.8 338 163-506 384-761 (903)
95 KOG1125 TPR repeat-containing 99.0 1.7E-07 3.6E-12 89.3 21.9 251 231-497 293-563 (579)
96 KOG2376 Signal recognition par 99.0 1.5E-05 3.2E-10 76.5 34.1 297 196-502 183-517 (652)
97 KOG3617 WD40 and TPR repeat-co 98.9 7E-06 1.5E-10 81.4 32.1 343 117-502 756-1171(1416)
98 PF04733 Coatomer_E: Coatomer 98.9 5E-08 1.1E-12 89.5 15.9 82 276-359 182-264 (290)
99 KOG1125 TPR repeat-containing 98.9 3.6E-07 7.8E-12 87.1 20.9 253 163-422 295-563 (579)
100 KOG1070 rRNA processing protei 98.9 1.7E-06 3.8E-11 90.3 27.1 224 117-347 1457-1687(1710)
101 KOG1914 mRNA cleavage and poly 98.9 8.6E-05 1.9E-09 70.7 36.9 409 115-538 17-499 (656)
102 KOG1070 rRNA processing protei 98.9 2E-06 4.3E-11 89.9 26.8 210 222-435 1457-1668(1710)
103 PRK14720 transcript cleavage f 98.9 1.1E-06 2.4E-11 90.9 25.0 239 114-412 26-268 (906)
104 PLN02789 farnesyltranstransfer 98.8 5.2E-06 1.1E-10 77.4 26.4 214 121-343 40-267 (320)
105 KOG1127 TPR repeat-containing 98.8 8.5E-06 1.8E-10 82.6 29.1 129 120-252 494-659 (1238)
106 KOG0985 Vesicle coat protein c 98.8 0.00017 3.6E-09 73.7 37.7 328 117-502 983-1338(1666)
107 KOG1127 TPR repeat-containing 98.8 1.5E-05 3.3E-10 80.8 29.7 185 132-324 472-658 (1238)
108 PLN02789 farnesyltranstransfer 98.8 1.1E-05 2.3E-10 75.3 26.8 205 165-378 49-267 (320)
109 KOG3616 Selective LIM binding 98.8 3.6E-05 7.7E-10 75.7 30.2 327 123-502 562-908 (1636)
110 TIGR03302 OM_YfiO outer membra 98.8 1.8E-06 4E-11 78.0 20.2 186 117-325 32-232 (235)
111 KOG0985 Vesicle coat protein c 98.7 7.1E-05 1.5E-09 76.2 32.1 335 139-538 968-1306(1666)
112 KOG3617 WD40 and TPR repeat-co 98.7 1.3E-05 2.9E-10 79.5 26.1 334 152-537 725-1106(1416)
113 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.8E-13 58.4 4.1 33 471-503 2-34 (34)
114 TIGR03302 OM_YfiO outer membra 98.7 3.6E-06 7.8E-11 76.1 20.2 59 371-429 171-231 (235)
115 KOG1128 Uncharacterized conser 98.7 8E-06 1.7E-10 80.2 22.6 212 157-393 402-614 (777)
116 COG5010 TadD Flp pilus assembl 98.7 8.2E-06 1.8E-10 70.6 20.2 158 265-426 70-227 (257)
117 KOG1128 Uncharacterized conser 98.7 2.3E-06 5E-11 83.9 18.9 217 189-429 399-615 (777)
118 KOG3081 Vesicle coat complex C 98.7 7.7E-05 1.7E-09 64.7 25.5 255 84-359 10-270 (299)
119 PRK10370 formate-dependent nit 98.7 5.3E-06 1.1E-10 72.0 19.0 124 166-296 52-178 (198)
120 PRK14720 transcript cleavage f 98.6 1.7E-05 3.6E-10 82.5 25.4 169 187-396 30-199 (906)
121 KOG3616 Selective LIM binding 98.6 5.8E-05 1.3E-09 74.2 27.2 48 368-424 884-931 (1636)
122 PRK10370 formate-dependent nit 98.6 1.2E-05 2.7E-10 69.6 20.7 119 236-360 52-173 (198)
123 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.6E-13 57.1 3.5 32 113-144 2-33 (34)
124 COG5010 TadD Flp pilus assembl 98.6 1.3E-05 2.8E-10 69.4 19.9 158 157-321 70-227 (257)
125 KOG3081 Vesicle coat complex C 98.6 5.3E-05 1.1E-09 65.7 23.2 139 268-417 115-257 (299)
126 PRK15179 Vi polysaccharide bio 98.6 4.5E-05 9.8E-10 78.6 25.9 201 200-414 64-268 (694)
127 PRK15179 Vi polysaccharide bio 98.5 5.6E-05 1.2E-09 77.9 25.7 214 117-359 27-244 (694)
128 PRK15359 type III secretion sy 98.5 1.6E-05 3.5E-10 65.1 17.1 92 229-325 30-121 (144)
129 PRK15359 type III secretion sy 98.5 1.5E-05 3.3E-10 65.3 16.3 93 159-253 30-122 (144)
130 KOG3060 Uncharacterized conser 98.5 0.00017 3.7E-09 62.1 22.7 188 131-325 25-220 (289)
131 COG4783 Putative Zn-dependent 98.4 0.00017 3.8E-09 68.1 23.1 118 199-322 317-434 (484)
132 COG4783 Putative Zn-dependent 98.4 0.00028 6.1E-09 66.7 24.1 240 125-395 209-454 (484)
133 TIGR02552 LcrH_SycD type III s 98.4 2.6E-05 5.6E-10 63.5 15.4 96 262-359 18-113 (135)
134 KOG3060 Uncharacterized conser 98.4 0.00047 1E-08 59.5 22.7 190 201-397 25-222 (289)
135 TIGR02552 LcrH_SycD type III s 98.3 3.2E-05 7E-10 62.9 15.3 95 226-325 20-114 (135)
136 PF09976 TPR_21: Tetratricopep 98.3 4.7E-05 1E-09 62.6 14.7 130 403-538 14-145 (145)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00013 2.8E-09 69.6 18.0 124 191-323 172-295 (395)
138 KOG2053 Mitochondrial inherita 98.1 0.014 3.1E-07 59.6 45.9 228 85-326 15-256 (932)
139 KOG1914 mRNA cleavage and poly 98.1 0.0098 2.1E-07 57.3 35.0 61 97-161 34-94 (656)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00018 4E-09 59.1 15.0 21 269-289 56-76 (145)
141 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 48.8 4.1 33 190-222 2-34 (35)
142 TIGR00756 PPR pentatricopeptid 98.1 7.7E-06 1.7E-10 48.4 4.3 33 120-152 2-34 (35)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.8E-09 68.0 15.3 123 158-289 174-296 (395)
144 KOG0550 Molecular chaperone (D 98.0 0.00065 1.4E-08 62.8 17.3 296 194-526 55-372 (486)
145 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 47.2 4.0 33 189-221 2-34 (34)
146 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3E-10 46.9 4.2 33 119-151 2-34 (34)
147 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00055 1.2E-08 54.1 13.9 22 229-250 45-66 (119)
148 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0006 1.3E-08 53.8 14.0 99 226-325 5-105 (119)
149 cd00189 TPR Tetratricopeptide 97.9 0.00035 7.6E-09 52.3 11.5 21 267-287 40-60 (100)
150 PF10037 MRP-S27: Mitochondria 97.8 0.00035 7.6E-09 67.0 13.5 124 291-414 61-186 (429)
151 PF10037 MRP-S27: Mitochondria 97.8 0.00041 8.8E-09 66.5 13.5 125 219-344 62-186 (429)
152 PRK10866 outer membrane biogen 97.8 0.0057 1.2E-07 55.0 20.1 78 120-198 34-114 (243)
153 KOG0550 Molecular chaperone (D 97.8 0.013 2.8E-07 54.5 21.8 227 125-359 56-315 (486)
154 PLN03088 SGT1, suppressor of 97.8 0.00088 1.9E-08 64.2 15.2 88 233-325 12-99 (356)
155 PF12895 Apc3: Anaphase-promot 97.8 4.5E-05 9.7E-10 56.0 5.0 82 454-537 2-84 (84)
156 cd00189 TPR Tetratricopeptide 97.7 0.00065 1.4E-08 50.8 11.4 92 157-250 4-95 (100)
157 PF14938 SNAP: Soluble NSF att 97.7 0.0087 1.9E-07 55.5 20.7 145 268-428 101-264 (282)
158 PRK15363 pathogenicity island 97.7 0.0015 3.3E-08 52.9 12.9 90 230-324 42-131 (157)
159 CHL00033 ycf3 photosystem I as 97.7 0.0013 2.7E-08 55.8 13.2 62 227-289 39-100 (168)
160 PF01535 PPR: PPR repeat; Int 97.7 6.2E-05 1.3E-09 42.9 3.6 29 120-148 2-30 (31)
161 PF05843 Suf: Suppressor of fo 97.7 0.00071 1.5E-08 62.4 12.4 130 368-505 3-136 (280)
162 KOG2796 Uncharacterized conser 97.7 0.0068 1.5E-07 52.8 17.0 131 156-290 180-315 (366)
163 PF01535 PPR: PPR repeat; Int 97.7 5.9E-05 1.3E-09 43.0 3.4 29 478-506 2-30 (31)
164 PF13414 TPR_11: TPR repeat; P 97.6 0.00029 6.3E-09 49.3 7.4 66 475-541 2-68 (69)
165 PRK10866 outer membrane biogen 97.6 0.014 3.1E-07 52.4 19.9 58 371-428 180-239 (243)
166 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.7E-08 49.4 10.4 78 265-342 29-115 (120)
167 PF08579 RPM2: Mitochondrial r 97.6 0.00093 2E-08 50.1 9.5 73 415-487 39-115 (120)
168 PRK02603 photosystem I assembl 97.6 0.0044 9.5E-08 52.7 15.3 89 189-281 36-126 (172)
169 PRK15363 pathogenicity island 97.6 0.0057 1.2E-07 49.6 14.8 90 195-289 42-131 (157)
170 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.5E-09 53.0 5.5 47 167-213 3-50 (84)
171 PRK10153 DNA-binding transcrip 97.6 0.0076 1.6E-07 60.5 18.9 135 219-359 333-481 (517)
172 PRK02603 photosystem I assembl 97.6 0.0051 1.1E-07 52.3 15.5 93 223-317 35-127 (172)
173 PF14938 SNAP: Soluble NSF att 97.6 0.0094 2E-07 55.3 18.3 96 404-504 117-224 (282)
174 COG4235 Cytochrome c biogenesi 97.6 0.0049 1.1E-07 55.2 15.3 108 177-290 146-256 (287)
175 COG3898 Uncharacterized membra 97.5 0.071 1.5E-06 49.5 30.6 250 236-505 133-392 (531)
176 CHL00033 ycf3 photosystem I as 97.5 0.0021 4.5E-08 54.5 12.6 81 188-272 35-117 (168)
177 PLN03088 SGT1, suppressor of 97.5 0.0036 7.7E-08 60.0 15.5 92 161-254 10-101 (356)
178 KOG2041 WD40 repeat protein [G 97.5 0.12 2.5E-06 51.7 27.0 124 150-286 689-821 (1189)
179 PF12688 TPR_5: Tetratrico pep 97.5 0.006 1.3E-07 47.6 13.6 92 196-288 9-102 (120)
180 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.7E-08 58.2 14.2 130 190-325 3-136 (280)
181 KOG0553 TPR repeat-containing 97.5 0.0017 3.6E-08 57.8 11.5 95 234-335 92-186 (304)
182 COG4700 Uncharacterized protei 97.5 0.042 9.1E-07 45.4 18.6 103 186-290 87-189 (251)
183 KOG0553 TPR repeat-containing 97.5 0.002 4.4E-08 57.3 11.8 95 198-299 91-185 (304)
184 COG4700 Uncharacterized protei 97.5 0.044 9.4E-07 45.3 18.5 128 150-282 86-214 (251)
185 PF13525 YfiO: Outer membrane 97.5 0.013 2.7E-07 51.3 16.9 76 121-196 8-85 (203)
186 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.12 2.5E-06 49.0 35.3 94 103-202 30-123 (660)
187 KOG2053 Mitochondrial inherita 97.4 0.2 4.3E-06 51.7 43.6 398 117-538 76-534 (932)
188 PRK10153 DNA-binding transcrip 97.4 0.012 2.6E-07 59.1 18.0 145 183-335 332-490 (517)
189 KOG2041 WD40 repeat protein [G 97.4 0.087 1.9E-06 52.5 22.5 49 453-501 1033-1082(1189)
190 PF13432 TPR_16: Tetratricopep 97.4 0.00081 1.8E-08 46.4 6.7 57 483-540 4-60 (65)
191 PF12688 TPR_5: Tetratrico pep 97.4 0.016 3.4E-07 45.3 14.3 93 302-394 7-103 (120)
192 PF06239 ECSIT: Evolutionarily 97.4 0.0047 1E-07 52.6 12.0 91 399-489 45-151 (228)
193 PF13432 TPR_16: Tetratricopep 97.3 0.0013 2.9E-08 45.2 7.2 55 231-289 5-59 (65)
194 PF07079 DUF1347: Protein of u 97.3 0.16 3.6E-06 48.2 37.9 108 89-200 52-179 (549)
195 PF14559 TPR_19: Tetratricopep 97.3 0.00097 2.1E-08 46.5 6.2 52 235-290 3-54 (68)
196 COG3898 Uncharacterized membra 97.3 0.16 3.5E-06 47.2 28.4 295 121-430 85-392 (531)
197 PF03704 BTAD: Bacterial trans 97.2 0.0088 1.9E-07 49.2 12.6 58 264-322 65-122 (146)
198 COG4235 Cytochrome c biogenesi 97.2 0.023 5.1E-07 51.0 15.7 99 222-325 155-256 (287)
199 COG4105 ComL DNA uptake lipopr 97.2 0.11 2.3E-06 45.9 19.3 80 120-200 37-118 (254)
200 PF06239 ECSIT: Evolutionarily 97.2 0.0064 1.4E-07 51.8 11.2 114 328-468 44-162 (228)
201 PF14559 TPR_19: Tetratricopep 97.2 0.0016 3.4E-08 45.4 6.6 52 273-325 3-54 (68)
202 PF13525 YfiO: Outer membrane 97.2 0.048 1E-06 47.7 17.3 49 372-420 147-197 (203)
203 KOG1130 Predicted G-alpha GTPa 97.2 0.0061 1.3E-07 56.5 11.7 132 298-429 197-343 (639)
204 PF13414 TPR_11: TPR repeat; P 97.2 0.0023 4.9E-08 44.7 7.2 61 224-288 4-65 (69)
205 PF03704 BTAD: Bacterial trans 97.1 0.007 1.5E-07 49.8 11.0 98 128-226 16-139 (146)
206 KOG1130 Predicted G-alpha GTPa 97.1 0.0035 7.6E-08 58.0 9.3 131 368-503 197-342 (639)
207 PF07079 DUF1347: Protein of u 97.1 0.28 6.1E-06 46.7 37.7 124 411-539 389-523 (549)
208 KOG2796 Uncharacterized conser 97.1 0.19 4.1E-06 44.2 22.5 138 367-505 178-315 (366)
209 PRK10803 tol-pal system protei 97.1 0.018 3.9E-07 52.2 13.6 91 234-325 154-246 (263)
210 PF13281 DUF4071: Domain of un 97.0 0.24 5.1E-06 47.0 21.0 32 294-325 303-334 (374)
211 PF13281 DUF4071: Domain of un 97.0 0.31 6.8E-06 46.2 23.0 32 399-430 303-334 (374)
212 PRK10803 tol-pal system protei 97.0 0.015 3.3E-07 52.7 12.7 99 189-290 144-246 (263)
213 PF13424 TPR_12: Tetratricopep 97.0 0.0025 5.4E-08 45.8 6.0 64 477-540 6-75 (78)
214 PF04840 Vps16_C: Vps16, C-ter 96.9 0.38 8.3E-06 45.1 27.0 107 298-424 179-285 (319)
215 KOG2280 Vacuolar assembly/sort 96.9 0.65 1.4E-05 47.1 24.0 113 364-500 682-794 (829)
216 KOG1538 Uncharacterized conser 96.9 0.061 1.3E-06 53.1 15.7 221 153-394 556-801 (1081)
217 COG3118 Thioredoxin domain-con 96.8 0.29 6.3E-06 44.0 17.9 51 128-179 144-194 (304)
218 PF13371 TPR_9: Tetratricopept 96.6 0.016 3.4E-07 40.9 7.8 53 233-289 5-57 (73)
219 PRK15331 chaperone protein Sic 96.6 0.019 4.1E-07 46.9 8.9 87 411-504 47-133 (165)
220 PF13371 TPR_9: Tetratricopept 96.6 0.018 3.8E-07 40.6 8.0 56 269-325 3-58 (73)
221 COG1729 Uncharacterized protei 96.4 0.064 1.4E-06 47.6 11.9 90 235-325 153-244 (262)
222 PRK15331 chaperone protein Sic 96.3 0.41 8.8E-06 39.3 14.7 88 232-324 46-133 (165)
223 KOG1941 Acetylcholine receptor 96.2 0.87 1.9E-05 42.2 17.6 230 274-503 19-273 (518)
224 smart00299 CLH Clathrin heavy 96.1 0.5 1.1E-05 38.4 15.1 126 121-272 10-136 (140)
225 PF13424 TPR_12: Tetratricopep 96.1 0.023 4.9E-07 40.7 6.1 60 263-322 7-72 (78)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.24 5.3E-06 47.7 14.3 65 222-290 74-141 (453)
227 PF04840 Vps16_C: Vps16, C-ter 96.0 1.3 2.9E-05 41.5 29.3 107 368-499 179-285 (319)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.5 3.3E-05 41.9 29.9 94 137-235 28-121 (660)
229 COG3118 Thioredoxin domain-con 96.0 1 2.2E-05 40.7 17.0 51 234-288 145-195 (304)
230 PF12921 ATP13: Mitochondrial 96.0 0.26 5.7E-06 38.9 12.0 100 400-524 1-101 (126)
231 PF10300 DUF3808: Protein of u 95.9 0.37 8.1E-06 48.1 15.9 161 370-537 192-373 (468)
232 COG1729 Uncharacterized protei 95.9 0.18 3.9E-06 44.9 12.0 98 437-540 143-244 (262)
233 KOG0543 FKBP-type peptidyl-pro 95.9 0.23 5E-06 46.7 13.2 61 226-290 260-320 (397)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.21 4.5E-06 48.1 13.0 66 115-182 72-141 (453)
235 PF13512 TPR_18: Tetratricopep 95.8 0.3 6.6E-06 39.0 11.8 55 235-290 22-76 (142)
236 KOG1538 Uncharacterized conser 95.8 1.7 3.7E-05 43.5 19.0 90 400-505 746-846 (1081)
237 PF04053 Coatomer_WDAD: Coatom 95.8 0.37 8E-06 47.4 15.1 133 119-287 296-428 (443)
238 PF08631 SPO22: Meiosis protei 95.8 1.6 3.4E-05 40.4 26.1 167 367-538 85-273 (278)
239 KOG4555 TPR repeat-containing 95.8 0.42 9.1E-06 37.2 11.8 91 232-326 52-145 (175)
240 KOG0543 FKBP-type peptidyl-pro 95.7 0.23 5E-06 46.7 12.4 127 159-290 214-355 (397)
241 PRK11906 transcriptional regul 95.7 0.83 1.8E-05 44.2 16.3 145 239-391 274-432 (458)
242 PF12921 ATP13: Mitochondrial 95.7 0.23 4.9E-06 39.3 10.6 98 330-447 1-99 (126)
243 KOG4555 TPR repeat-containing 95.6 0.4 8.6E-06 37.3 11.1 92 162-254 52-146 (175)
244 PF13512 TPR_18: Tetratricopep 95.6 0.32 7E-06 38.9 11.1 82 121-202 13-96 (142)
245 PF04053 Coatomer_WDAD: Coatom 95.5 0.52 1.1E-05 46.4 14.8 58 259-325 345-402 (443)
246 PF10300 DUF3808: Protein of u 95.5 1 2.2E-05 45.0 17.0 163 192-359 192-375 (468)
247 KOG2114 Vacuolar assembly/sort 95.4 1.3 2.8E-05 45.8 16.9 214 225-469 336-549 (933)
248 KOG2610 Uncharacterized conser 95.3 0.74 1.6E-05 42.1 13.5 116 165-286 115-234 (491)
249 COG4105 ComL DNA uptake lipopr 95.3 2 4.3E-05 38.1 21.0 58 372-429 173-232 (254)
250 KOG2280 Vacuolar assembly/sort 95.3 4.1 9E-05 41.7 32.7 313 193-534 442-793 (829)
251 KOG1585 Protein required for f 95.2 2 4.2E-05 37.7 17.1 55 479-534 193-250 (308)
252 COG0457 NrfG FOG: TPR repeat [ 95.2 2 4.4E-05 37.9 29.7 154 275-429 37-195 (291)
253 PF08631 SPO22: Meiosis protei 95.1 2.7 5.9E-05 38.8 25.4 191 311-503 51-273 (278)
254 KOG2610 Uncharacterized conser 95.0 0.8 1.7E-05 41.9 12.9 152 343-502 115-273 (491)
255 KOG3941 Intermediate in Toll s 94.9 0.25 5.5E-06 43.9 9.3 93 399-491 65-173 (406)
256 COG4649 Uncharacterized protei 94.9 1.9 4E-05 35.7 14.0 123 199-324 69-195 (221)
257 KOG1550 Extracellular protein 94.9 5.4 0.00012 41.0 27.2 280 239-539 228-537 (552)
258 PRK11906 transcriptional regul 94.9 3.2 7E-05 40.3 17.3 79 241-324 322-400 (458)
259 PF13428 TPR_14: Tetratricopep 94.8 0.12 2.5E-06 32.1 5.3 29 226-254 4-32 (44)
260 PF13428 TPR_14: Tetratricopep 94.7 0.11 2.4E-06 32.2 5.0 28 156-183 4-31 (44)
261 PF04184 ST7: ST7 protein; In 94.6 3.8 8.3E-05 40.0 17.1 56 267-322 265-321 (539)
262 PF13176 TPR_7: Tetratricopept 94.5 0.079 1.7E-06 31.1 3.9 26 513-538 1-26 (36)
263 KOG1941 Acetylcholine receptor 94.5 1.2 2.6E-05 41.3 12.8 46 128-173 16-63 (518)
264 KOG1920 IkappaB kinase complex 94.5 9 0.00019 41.7 24.3 45 240-289 774-820 (1265)
265 PF04184 ST7: ST7 protein; In 94.4 3.3 7.3E-05 40.4 16.1 57 336-392 264-321 (539)
266 KOG3941 Intermediate in Toll s 94.4 0.33 7.1E-06 43.2 8.8 107 114-239 63-174 (406)
267 COG4649 Uncharacterized protei 94.3 2.6 5.6E-05 34.9 14.3 135 223-360 59-196 (221)
268 COG2976 Uncharacterized protei 94.3 2.2 4.7E-05 36.1 12.9 54 484-539 134-187 (207)
269 COG2909 MalT ATP-dependent tra 94.2 8.5 0.00018 40.5 26.3 230 305-538 424-686 (894)
270 COG0457 NrfG FOG: TPR repeat [ 94.2 3.7 8E-05 36.1 30.1 95 224-323 60-157 (291)
271 KOG1585 Protein required for f 94.1 3.8 8.3E-05 36.0 16.8 206 225-464 33-250 (308)
272 smart00299 CLH Clathrin heavy 94.1 2.7 5.8E-05 34.1 16.0 84 266-357 12-95 (140)
273 KOG1550 Extracellular protein 94.0 8.6 0.00019 39.6 25.1 246 169-431 228-505 (552)
274 PF10345 Cohesin_load: Cohesin 94.0 9.3 0.0002 40.0 32.0 127 122-249 104-251 (608)
275 PF09205 DUF1955: Domain of un 93.8 2.6 5.5E-05 33.1 14.4 62 265-327 90-151 (161)
276 PF13170 DUF4003: Protein of u 93.8 5.7 0.00012 36.9 20.0 135 348-486 79-227 (297)
277 PF09205 DUF1955: Domain of un 93.8 2.7 5.8E-05 33.0 15.1 54 453-507 98-151 (161)
278 COG3629 DnrI DNA-binding trans 93.7 0.97 2.1E-05 41.0 10.8 78 262-340 154-236 (280)
279 PF00515 TPR_1: Tetratricopept 93.5 0.2 4.4E-06 28.7 4.3 30 512-541 2-31 (34)
280 COG3629 DnrI DNA-binding trans 93.5 1 2.2E-05 40.9 10.6 79 223-305 153-236 (280)
281 COG4785 NlpI Lipoprotein NlpI, 93.5 4.6 9.9E-05 34.8 15.6 182 236-430 78-266 (297)
282 PF07719 TPR_2: Tetratricopept 93.2 0.24 5.2E-06 28.3 4.3 29 513-541 3-31 (34)
283 KOG2114 Vacuolar assembly/sort 93.0 13 0.00029 38.8 25.8 120 120-249 336-457 (933)
284 PF09613 HrpB1_HrpK: Bacterial 92.9 4.6 0.0001 33.2 13.5 53 234-290 21-73 (160)
285 PF04097 Nic96: Nup93/Nic96; 92.7 15 0.00031 38.5 19.2 49 152-201 110-158 (613)
286 KOG0890 Protein kinase of the 92.6 27 0.00058 41.4 26.4 317 193-541 1388-1732(2382)
287 PF10602 RPN7: 26S proteasome 92.6 1.4 3.1E-05 37.3 9.8 62 368-429 38-101 (177)
288 PF02259 FAT: FAT domain; Int 92.6 10 0.00022 36.4 18.6 64 476-539 146-212 (352)
289 PF13431 TPR_17: Tetratricopep 92.5 0.16 3.6E-06 29.3 2.8 31 247-281 3-33 (34)
290 PF13170 DUF4003: Protein of u 92.3 9.5 0.00021 35.5 20.6 87 204-292 78-174 (297)
291 KOG1258 mRNA processing protei 92.3 14 0.0003 37.2 32.7 184 330-525 296-489 (577)
292 PF07035 Mic1: Colon cancer-as 92.0 6.4 0.00014 32.8 14.9 101 387-502 15-115 (167)
293 PF13176 TPR_7: Tetratricopept 92.0 0.41 8.9E-06 28.0 4.1 27 478-504 1-27 (36)
294 COG1747 Uncharacterized N-term 91.9 14 0.00029 36.5 24.8 180 328-520 63-248 (711)
295 KOG4570 Uncharacterized conser 91.9 2.2 4.8E-05 38.8 10.2 106 147-254 58-166 (418)
296 PF10602 RPN7: 26S proteasome 91.7 2.9 6.2E-05 35.5 10.6 60 120-179 38-99 (177)
297 PF07035 Mic1: Colon cancer-as 91.7 6.9 0.00015 32.6 15.5 22 182-203 23-44 (167)
298 KOG1464 COP9 signalosome, subu 91.3 11 0.00023 33.8 22.7 53 236-288 40-92 (440)
299 PF00637 Clathrin: Region in C 91.2 0.0069 1.5E-07 49.6 -5.7 86 123-215 12-97 (143)
300 PF13431 TPR_17: Tetratricopep 91.2 0.28 6E-06 28.3 2.7 32 389-421 2-33 (34)
301 COG4785 NlpI Lipoprotein NlpI, 91.2 9.3 0.0002 33.0 17.2 63 332-395 100-162 (297)
302 PF13181 TPR_8: Tetratricopept 91.0 0.5 1.1E-05 27.0 3.8 29 513-541 3-31 (34)
303 KOG1258 mRNA processing protei 90.7 20 0.00043 36.1 33.7 358 120-490 81-489 (577)
304 PF09613 HrpB1_HrpK: Bacterial 90.5 8.7 0.00019 31.6 13.5 52 272-325 21-73 (160)
305 PF04097 Nic96: Nup93/Nic96; 90.4 25 0.00054 36.8 18.7 29 297-325 325-356 (613)
306 KOG4234 TPR repeat-containing 90.2 3.6 7.7E-05 35.0 9.2 95 408-505 102-197 (271)
307 PF02259 FAT: FAT domain; Int 90.0 18 0.0004 34.6 22.2 66 294-359 144-212 (352)
308 KOG0276 Vesicle coat complex C 89.9 7 0.00015 39.1 12.4 99 199-321 648-746 (794)
309 KOG4570 Uncharacterized conser 89.7 4.6 9.9E-05 36.9 10.2 104 290-395 58-164 (418)
310 PRK15180 Vi polysaccharide bio 89.6 2.7 5.8E-05 40.6 9.1 119 378-505 301-420 (831)
311 TIGR02561 HrpB1_HrpK type III 89.4 10 0.00022 30.7 12.2 51 236-290 23-73 (153)
312 KOG0276 Vesicle coat complex C 89.1 9.3 0.0002 38.3 12.5 98 234-355 648-745 (794)
313 PF13374 TPR_10: Tetratricopep 89.0 0.95 2.1E-05 27.2 4.2 28 512-539 3-30 (42)
314 PRK09687 putative lyase; Provi 88.9 19 0.00042 33.2 29.0 234 259-522 35-278 (280)
315 PF11207 DUF2989: Protein of u 88.5 4.9 0.00011 34.4 9.1 45 236-280 153-197 (203)
316 COG2976 Uncharacterized protei 88.5 15 0.00032 31.4 14.0 93 409-506 97-189 (207)
317 COG1747 Uncharacterized N-term 87.7 31 0.00066 34.2 25.2 178 222-410 65-248 (711)
318 PRK09687 putative lyase; Provi 87.6 23 0.00051 32.7 28.9 126 116-251 35-169 (280)
319 PF00515 TPR_1: Tetratricopept 87.5 1.9 4.1E-05 24.5 4.6 29 477-505 2-30 (34)
320 KOG4648 Uncharacterized conser 87.4 3.5 7.6E-05 38.0 8.1 85 198-288 107-192 (536)
321 PF07719 TPR_2: Tetratricopept 87.4 1.9 4.1E-05 24.4 4.5 29 477-505 2-30 (34)
322 KOG2063 Vacuolar assembly/sort 87.3 47 0.001 35.8 20.1 116 263-378 506-638 (877)
323 KOG1920 IkappaB kinase complex 87.2 52 0.0011 36.3 25.5 74 452-536 976-1051(1265)
324 PF11207 DUF2989: Protein of u 87.1 7.2 0.00016 33.4 9.3 75 456-531 121-198 (203)
325 PF13374 TPR_10: Tetratricopep 86.4 1.9 4.2E-05 25.8 4.5 29 476-504 2-30 (42)
326 KOG2396 HAT (Half-A-TPR) repea 86.2 37 0.0008 33.5 36.4 399 115-539 102-558 (568)
327 KOG4234 TPR repeat-containing 85.4 20 0.00044 30.7 10.8 19 163-181 105-123 (271)
328 COG3947 Response regulator con 84.5 32 0.0007 31.4 17.1 60 263-323 281-340 (361)
329 PF06552 TOM20_plant: Plant sp 84.4 20 0.00043 30.2 10.4 41 313-361 97-137 (186)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 9 0.00019 28.3 7.3 64 456-520 22-85 (103)
331 KOG4648 Uncharacterized conser 84.0 7 0.00015 36.2 8.3 93 231-330 105-197 (536)
332 PF02284 COX5A: Cytochrome c o 83.9 8.3 0.00018 28.8 7.1 61 459-520 28-88 (108)
333 PF02284 COX5A: Cytochrome c o 83.4 9.7 0.00021 28.4 7.3 47 279-325 28-74 (108)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 83.1 12 0.00027 27.6 7.6 45 279-323 25-69 (103)
335 KOG1586 Protein required for f 82.5 34 0.00074 30.2 19.0 28 408-435 161-188 (288)
336 COG4455 ImpE Protein of avirul 80.9 13 0.00028 32.3 8.2 54 230-287 8-61 (273)
337 COG5159 RPN6 26S proteasome re 80.9 32 0.00069 31.2 10.9 24 480-503 129-152 (421)
338 COG3947 Response regulator con 80.8 45 0.00098 30.5 16.6 71 298-369 281-356 (361)
339 PF10345 Cohesin_load: Cohesin 80.8 78 0.0017 33.2 42.5 418 117-539 58-605 (608)
340 PF06552 TOM20_plant: Plant sp 80.8 31 0.00068 29.0 10.2 76 383-472 52-138 (186)
341 PF07163 Pex26: Pex26 protein; 80.0 22 0.00048 32.2 9.7 90 335-424 87-181 (309)
342 COG4455 ImpE Protein of avirul 79.7 34 0.00074 29.8 10.3 76 369-445 4-81 (273)
343 KOG4507 Uncharacterized conser 79.5 12 0.00025 37.5 8.5 103 200-307 619-721 (886)
344 PF07721 TPR_4: Tetratricopept 79.4 3.2 6.9E-05 22.0 2.9 19 481-499 6-24 (26)
345 PF13181 TPR_8: Tetratricopept 79.1 6.3 0.00014 22.2 4.4 29 477-505 2-30 (34)
346 PF13174 TPR_6: Tetratricopept 79.0 3.8 8.2E-05 22.9 3.4 23 517-539 6-28 (33)
347 PF00637 Clathrin: Region in C 78.7 0.86 1.9E-05 37.1 0.7 82 159-247 13-94 (143)
348 PF07163 Pex26: Pex26 protein; 78.6 24 0.00051 32.0 9.4 89 123-211 88-181 (309)
349 TIGR02561 HrpB1_HrpK type III 78.4 35 0.00075 27.7 12.4 52 272-325 21-73 (153)
350 COG5159 RPN6 26S proteasome re 78.3 35 0.00076 31.0 10.3 127 123-249 8-151 (421)
351 TIGR02508 type_III_yscG type I 78.0 26 0.00057 26.1 8.4 52 269-326 47-98 (115)
352 TIGR02508 type_III_yscG type I 77.9 24 0.00052 26.3 7.7 58 162-226 48-105 (115)
353 PF13174 TPR_6: Tetratricopept 77.6 3.3 7.2E-05 23.1 2.9 22 160-181 7-28 (33)
354 KOG2582 COP9 signalosome, subu 77.4 66 0.0014 30.4 17.9 187 6-216 12-211 (422)
355 KOG4642 Chaperone-dependent E3 77.2 52 0.0011 29.2 10.9 114 235-354 22-140 (284)
356 PRK11619 lytic murein transgly 76.6 1.1E+02 0.0023 32.4 29.9 135 163-311 43-178 (644)
357 TIGR03504 FimV_Cterm FimV C-te 76.3 5.8 0.00013 24.5 3.7 21 160-180 6-26 (44)
358 KOG2471 TPR repeat-containing 76.2 59 0.0013 32.1 11.9 304 166-487 30-380 (696)
359 smart00028 TPR Tetratricopepti 75.6 5 0.00011 21.5 3.4 26 514-539 4-29 (34)
360 TIGR03504 FimV_Cterm FimV C-te 74.8 7.7 0.00017 23.9 4.0 25 481-505 4-28 (44)
361 PHA02875 ankyrin repeat protei 74.4 93 0.002 30.7 15.6 16 458-473 297-312 (413)
362 PF00244 14-3-3: 14-3-3 protei 74.1 39 0.00085 30.3 10.0 52 418-469 143-197 (236)
363 PHA02875 ankyrin repeat protei 73.7 96 0.0021 30.5 16.6 113 123-247 37-156 (413)
364 KOG4507 Uncharacterized conser 72.9 18 0.0004 36.2 7.9 151 186-342 569-721 (886)
365 PF09986 DUF2225: Uncharacteri 72.4 68 0.0015 28.2 11.1 24 516-539 170-193 (214)
366 PF14689 SPOB_a: Sensor_kinase 71.2 12 0.00025 25.2 4.6 46 457-504 6-51 (62)
367 PF11846 DUF3366: Domain of un 71.1 20 0.00044 30.9 7.4 53 453-505 120-173 (193)
368 PF10579 Rapsyn_N: Rapsyn N-te 70.4 12 0.00027 26.4 4.6 46 453-498 18-65 (80)
369 PF09670 Cas_Cas02710: CRISPR- 69.1 64 0.0014 31.4 11.0 53 376-429 141-197 (379)
370 COG2909 MalT ATP-dependent tra 68.4 1.8E+02 0.0038 31.4 31.3 321 136-466 299-684 (894)
371 PF14689 SPOB_a: Sensor_kinase 66.9 17 0.00037 24.4 4.7 47 491-539 5-51 (62)
372 KOG2063 Vacuolar assembly/sort 66.0 2.1E+02 0.0045 31.3 18.9 116 120-235 506-638 (877)
373 PF11848 DUF3368: Domain of un 65.7 26 0.00056 22.1 5.0 35 485-519 11-45 (48)
374 PF07575 Nucleopor_Nup85: Nup8 65.2 1.8E+02 0.0039 30.3 17.4 28 116-144 147-174 (566)
375 PF11846 DUF3366: Domain of un 63.5 22 0.00047 30.7 6.1 33 432-469 140-172 (193)
376 KOG3364 Membrane protein invol 62.9 78 0.0017 25.3 8.2 66 474-539 30-99 (149)
377 PF10579 Rapsyn_N: Rapsyn N-te 61.6 23 0.0005 25.1 4.6 19 299-317 46-64 (80)
378 PF13929 mRNA_stabil: mRNA sta 61.6 1.3E+02 0.0029 27.6 17.5 113 277-389 144-261 (292)
379 PF08424 NRDE-2: NRDE-2, neces 60.8 1.5E+02 0.0033 28.0 18.5 79 240-323 48-129 (321)
380 KOG4077 Cytochrome c oxidase, 59.8 71 0.0015 25.1 7.2 47 279-325 67-113 (149)
381 PF08424 NRDE-2: NRDE-2, neces 58.9 1.6E+02 0.0036 27.8 17.6 79 205-288 48-129 (321)
382 COG0790 FOG: TPR repeat, SEL1 58.8 1.5E+02 0.0033 27.4 22.0 16 381-396 206-221 (292)
383 PF14853 Fis1_TPR_C: Fis1 C-te 58.4 48 0.001 21.5 6.1 32 407-440 7-38 (53)
384 PF12862 Apc5: Anaphase-promot 58.2 53 0.0012 24.2 6.5 22 267-288 47-68 (94)
385 KOG4642 Chaperone-dependent E3 57.7 1.4E+02 0.0031 26.6 11.1 55 229-287 50-104 (284)
386 PF04190 DUF410: Protein of un 57.5 1.5E+02 0.0033 27.0 18.4 81 365-469 89-169 (260)
387 KOG4077 Cytochrome c oxidase, 57.4 84 0.0018 24.7 7.2 46 460-505 68-113 (149)
388 KOG4521 Nuclear pore complex, 57.3 3.2E+02 0.007 30.6 14.0 153 198-352 930-1123(1480)
389 PRK15180 Vi polysaccharide bio 56.8 2.1E+02 0.0046 28.4 26.0 120 165-291 301-421 (831)
390 COG0735 Fur Fe2+/Zn2+ uptake r 56.8 61 0.0013 26.4 7.1 65 462-527 7-71 (145)
391 PF09477 Type_III_YscG: Bacter 56.7 86 0.0019 23.9 9.6 10 271-280 50-59 (116)
392 PF04190 DUF410: Protein of un 55.6 1.7E+02 0.0036 26.8 19.7 82 222-325 89-170 (260)
393 cd00280 TRFH Telomeric Repeat 55.2 1E+02 0.0022 26.2 8.0 67 457-526 85-158 (200)
394 PRK10941 hypothetical protein; 54.7 1.7E+02 0.0038 26.8 10.8 59 194-253 187-245 (269)
395 PF12862 Apc5: Anaphase-promot 54.5 85 0.0018 23.1 7.8 67 452-518 9-84 (94)
396 COG5187 RPN7 26S proteasome re 53.7 1.8E+02 0.0039 26.7 13.5 114 259-374 113-235 (412)
397 KOG0687 26S proteasome regulat 53.6 2E+02 0.0043 27.1 15.1 136 219-360 66-210 (393)
398 PRK13342 recombination factor 52.7 2.4E+02 0.0052 27.9 19.4 30 414-443 243-272 (413)
399 KOG2066 Vacuolar assembly/sort 52.5 3.2E+02 0.0069 29.1 32.2 75 119-200 393-467 (846)
400 KOG0376 Serine-threonine phosp 52.5 35 0.00076 33.5 5.7 102 196-305 12-114 (476)
401 KOG2908 26S proteasome regulat 52.5 2E+02 0.0044 27.1 10.2 68 371-438 80-157 (380)
402 KOG2066 Vacuolar assembly/sort 52.4 3.2E+02 0.0069 29.1 28.2 168 125-324 363-533 (846)
403 PF11817 Foie-gras_1: Foie gra 51.6 79 0.0017 28.6 7.8 60 479-538 181-245 (247)
404 PRK10564 maltose regulon perip 51.5 41 0.0009 31.0 5.7 28 301-328 262-289 (303)
405 PF13929 mRNA_stabil: mRNA sta 51.4 2E+02 0.0044 26.5 18.6 116 201-318 141-260 (292)
406 PF09670 Cas_Cas02710: CRISPR- 50.9 2E+02 0.0044 28.0 10.8 57 125-182 138-198 (379)
407 COG5108 RPO41 Mitochondrial DN 50.8 1.4E+02 0.003 30.9 9.5 48 193-240 33-82 (1117)
408 PF09477 Type_III_YscG: Bacter 50.3 1.1E+02 0.0024 23.3 8.8 79 203-291 21-99 (116)
409 PF07575 Nucleopor_Nup85: Nup8 49.5 2E+02 0.0043 29.9 11.2 22 84-105 149-171 (566)
410 KOG0686 COP9 signalosome, subu 49.5 2.6E+02 0.0056 27.2 13.4 94 154-249 151-255 (466)
411 KOG0686 COP9 signalosome, subu 49.5 2.6E+02 0.0056 27.2 14.9 95 224-321 151-254 (466)
412 COG0790 FOG: TPR repeat, SEL1 49.1 2.2E+02 0.0047 26.3 23.9 59 453-515 203-276 (292)
413 KOG0890 Protein kinase of the 48.8 6E+02 0.013 31.3 27.5 152 158-320 1388-1542(2382)
414 COG0735 Fur Fe2+/Zn2+ uptake r 48.8 1.3E+02 0.0029 24.5 7.9 26 159-184 26-51 (145)
415 cd08819 CARD_MDA5_2 Caspase ac 48.4 1E+02 0.0023 22.4 7.5 67 460-532 21-87 (88)
416 PRK10564 maltose regulon perip 48.3 35 0.00076 31.4 4.8 39 190-228 259-297 (303)
417 cd00280 TRFH Telomeric Repeat 48.2 1E+02 0.0022 26.2 6.9 14 382-395 85-98 (200)
418 cd08819 CARD_MDA5_2 Caspase ac 47.6 1.1E+02 0.0023 22.3 6.8 36 165-205 48-83 (88)
419 COG5108 RPO41 Mitochondrial DN 47.3 1.2E+02 0.0027 31.3 8.6 90 123-215 33-130 (1117)
420 KOG3364 Membrane protein invol 47.2 1.5E+02 0.0032 23.8 8.8 69 220-290 29-100 (149)
421 PRK13342 recombination factor 47.1 3E+02 0.0064 27.2 19.0 121 276-415 152-279 (413)
422 KOG0376 Serine-threonine phosp 47.1 48 0.001 32.6 5.7 102 304-411 12-115 (476)
423 PF03745 DUF309: Domain of unk 46.9 76 0.0016 21.3 5.1 12 415-426 13-24 (62)
424 PF11848 DUF3368: Domain of un 46.5 73 0.0016 20.0 5.1 33 199-231 13-45 (48)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 46.2 1.5E+02 0.0032 23.5 8.7 45 494-538 81-126 (126)
426 KOG2297 Predicted translation 46.0 2.5E+02 0.0055 26.1 16.8 19 402-420 322-340 (412)
427 PF11663 Toxin_YhaV: Toxin wit 46.0 28 0.00062 27.6 3.3 31 129-161 106-136 (140)
428 PF11663 Toxin_YhaV: Toxin wit 45.8 23 0.00049 28.1 2.8 31 273-305 107-137 (140)
429 KOG0551 Hsp90 co-chaperone CNS 45.5 2E+02 0.0042 27.2 8.9 92 229-321 87-178 (390)
430 PF14561 TPR_20: Tetratricopep 44.8 1.2E+02 0.0027 22.2 8.1 23 229-251 28-50 (90)
431 KOG0687 26S proteasome regulat 43.6 2.9E+02 0.0062 26.1 14.1 95 368-469 106-209 (393)
432 KOG0128 RNA-binding protein SA 43.2 4.5E+02 0.0098 28.3 32.9 57 452-509 473-530 (881)
433 PRK11619 lytic murein transgly 42.9 4.4E+02 0.0095 28.0 37.5 337 160-535 106-463 (644)
434 KOG1586 Protein required for f 42.5 2.5E+02 0.0054 25.1 19.8 22 305-326 163-184 (288)
435 KOG1464 COP9 signalosome, subu 42.4 2.7E+02 0.0058 25.4 24.7 272 182-466 20-328 (440)
436 PRK13184 pknD serine/threonine 42.0 5.3E+02 0.012 28.7 25.4 95 159-256 481-585 (932)
437 PRK10941 hypothetical protein; 41.7 2.8E+02 0.0061 25.4 10.5 59 370-429 185-243 (269)
438 PF11817 Foie-gras_1: Foie gra 41.5 1.8E+02 0.0038 26.3 8.4 54 301-354 183-241 (247)
439 PF14853 Fis1_TPR_C: Fis1 C-te 41.5 97 0.0021 20.0 5.5 34 482-517 7-40 (53)
440 smart00386 HAT HAT (Half-A-TPR 41.3 59 0.0013 17.5 3.7 12 240-251 4-15 (33)
441 TIGR01503 MthylAspMut_E methyl 41.2 2.8E+02 0.006 27.6 9.7 48 275-325 68-115 (480)
442 KOG1308 Hsp70-interacting prot 40.9 37 0.00081 31.8 3.8 119 306-429 124-243 (377)
443 KOG0991 Replication factor C, 40.7 2.7E+02 0.0058 24.9 15.6 87 334-428 133-219 (333)
444 PHA02537 M terminase endonucle 40.3 2.7E+02 0.0058 24.8 9.4 21 411-431 93-113 (230)
445 PRK11639 zinc uptake transcrip 39.9 1.7E+02 0.0037 24.5 7.5 60 467-527 17-76 (169)
446 KOG1308 Hsp70-interacting prot 39.9 20 0.00044 33.4 2.1 87 236-327 127-213 (377)
447 PF15297 CKAP2_C: Cytoskeleton 39.9 1.8E+02 0.0039 27.6 8.0 63 458-522 120-186 (353)
448 PRK09462 fur ferric uptake reg 39.7 1.6E+02 0.0034 24.0 7.1 60 467-527 8-68 (148)
449 PF13762 MNE1: Mitochondrial s 39.6 2.1E+02 0.0045 23.3 11.3 81 156-236 42-128 (145)
450 PF10475 DUF2450: Protein of u 38.7 3.2E+02 0.0069 25.4 9.8 114 229-356 104-222 (291)
451 PF10366 Vps39_1: Vacuolar sor 37.6 1.9E+02 0.004 22.2 8.0 26 264-289 42-67 (108)
452 PRK09857 putative transposase; 37.5 2.4E+02 0.0052 26.3 8.7 61 193-254 211-271 (292)
453 KOG2034 Vacuolar sorting prote 37.2 5.8E+02 0.013 27.8 25.4 281 122-428 362-688 (911)
454 KOG2659 LisH motif-containing 36.8 3E+02 0.0065 24.4 9.1 63 116-180 24-91 (228)
455 PF09454 Vps23_core: Vps23 cor 36.3 77 0.0017 21.6 3.9 30 189-218 9-38 (65)
456 KOG2582 COP9 signalosome, subu 36.1 4E+02 0.0087 25.6 17.6 55 451-505 287-345 (422)
457 PF10366 Vps39_1: Vacuolar sor 35.7 2E+02 0.0043 22.0 7.8 26 156-181 42-67 (108)
458 COG4976 Predicted methyltransf 35.7 67 0.0014 28.3 4.3 54 451-506 5-59 (287)
459 PF04910 Tcf25: Transcriptiona 35.6 4.2E+02 0.0091 25.6 18.4 162 370-540 14-222 (360)
460 PF08311 Mad3_BUB1_I: Mad3/BUB 35.4 2.2E+02 0.0048 22.4 9.0 43 241-285 81-123 (126)
461 PF14669 Asp_Glu_race_2: Putat 34.7 3E+02 0.0065 23.7 14.5 184 146-356 1-206 (233)
462 KOG0991 Replication factor C, 34.7 3.4E+02 0.0073 24.3 12.1 105 341-476 169-273 (333)
463 COG4715 Uncharacterized conser 34.5 5.2E+02 0.011 26.4 19.4 90 264-358 306-397 (587)
464 KOG4567 GTPase-activating prot 33.5 2.8E+02 0.006 25.9 7.9 56 352-412 264-319 (370)
465 PRK11639 zinc uptake transcrip 33.4 2.9E+02 0.0063 23.2 8.0 21 167-187 39-59 (169)
466 COG4976 Predicted methyltransf 33.4 1E+02 0.0022 27.3 5.0 52 235-290 7-58 (287)
467 KOG2300 Uncharacterized conser 33.3 5.2E+02 0.011 26.0 34.1 383 120-512 48-522 (629)
468 KOG2659 LisH motif-containing 33.0 3.5E+02 0.0076 24.0 9.0 28 399-426 24-51 (228)
469 COG4941 Predicted RNA polymera 32.5 4.4E+02 0.0096 25.0 12.4 117 311-430 271-394 (415)
470 PF09986 DUF2225: Uncharacteri 32.5 3.5E+02 0.0076 23.8 11.9 50 457-506 141-195 (214)
471 KOG0403 Neoplastic transformat 32.4 5.1E+02 0.011 25.7 16.6 337 74-432 201-574 (645)
472 PF15297 CKAP2_C: Cytoskeleton 31.9 4.1E+02 0.0088 25.3 9.0 47 261-307 140-186 (353)
473 PF13762 MNE1: Mitochondrial s 31.9 2.8E+02 0.0061 22.6 11.0 80 334-413 42-127 (145)
474 KOG2300 Uncharacterized conser 31.7 5.5E+02 0.012 25.8 35.4 123 124-246 13-150 (629)
475 PF00244 14-3-3: 14-3-3 protei 31.6 3.8E+02 0.0083 24.0 12.4 59 336-394 6-65 (236)
476 TIGR02710 CRISPR-associated pr 31.4 5E+02 0.011 25.3 11.3 22 376-397 140-161 (380)
477 PF12926 MOZART2: Mitotic-spin 31.4 2.1E+02 0.0045 20.9 7.9 42 352-393 29-70 (88)
478 PF09454 Vps23_core: Vps23 cor 31.4 1.7E+02 0.0037 19.9 5.0 47 365-412 7-53 (65)
479 KOG1839 Uncharacterized protei 31.4 6.5E+02 0.014 28.8 11.6 65 222-287 972-1041(1236)
480 COG4941 Predicted RNA polymera 31.0 4.7E+02 0.01 24.8 11.5 117 380-505 270-394 (415)
481 KOG4279 Serine/threonine prote 30.7 6.9E+02 0.015 26.7 12.6 204 99-337 184-406 (1226)
482 cd07153 Fur_like Ferric uptake 30.7 1.1E+02 0.0024 23.4 4.8 37 489-525 13-49 (116)
483 smart00101 14_3_3 14-3-3 homol 30.5 4.1E+02 0.0089 24.0 15.6 53 417-469 144-199 (244)
484 PRK09857 putative transposase; 30.5 4.1E+02 0.0088 24.8 9.0 64 226-293 209-272 (292)
485 cd07153 Fur_like Ferric uptake 29.9 1.8E+02 0.0039 22.3 5.8 45 195-239 7-51 (116)
486 PRK09462 fur ferric uptake reg 29.7 3.1E+02 0.0067 22.3 7.6 16 169-184 33-48 (148)
487 KOG2422 Uncharacterized conser 29.6 6.4E+02 0.014 26.0 17.5 94 195-288 349-446 (665)
488 PF13934 ELYS: Nuclear pore co 29.1 4.1E+02 0.009 23.6 11.2 88 121-216 79-168 (226)
489 PF10516 SHNi-TPR: SHNi-TPR; 28.8 1.3E+02 0.0028 17.9 3.5 27 513-539 3-29 (38)
490 PRK13800 putative oxidoreducta 28.8 8.6E+02 0.019 27.2 30.9 247 151-429 633-880 (897)
491 KOG4567 GTPase-activating prot 27.8 3.8E+02 0.0083 25.1 7.8 57 316-377 263-319 (370)
492 PF14561 TPR_20: Tetratricopep 27.7 2.5E+02 0.0054 20.6 9.9 31 187-217 21-51 (90)
493 PF03745 DUF309: Domain of unk 27.5 2E+02 0.0043 19.4 5.6 46 378-423 11-61 (62)
494 KOG1839 Uncharacterized protei 27.5 9.9E+02 0.021 27.5 12.4 62 259-320 1055-1123(1236)
495 KOG3807 Predicted membrane pro 27.2 5.4E+02 0.012 24.3 11.8 146 229-391 190-336 (556)
496 PF01475 FUR: Ferric uptake re 26.8 1.8E+02 0.004 22.5 5.4 45 193-237 12-56 (120)
497 PHA03100 ankyrin repeat protei 26.4 5.1E+02 0.011 26.0 9.9 242 159-436 38-311 (480)
498 smart00777 Mad3_BUB1_I Mad3/BU 26.3 3.3E+02 0.0071 21.5 9.1 75 457-536 49-124 (125)
499 KOG1166 Mitotic checkpoint ser 26.2 3.2E+02 0.007 30.4 8.4 61 455-515 92-153 (974)
500 PRK13341 recombination factor 26.0 8.6E+02 0.019 26.3 19.1 45 400-445 258-302 (725)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-65 Score=532.85 Aligned_cols=478 Identities=18% Similarity=0.231 Sum_probs=428.6
Q ss_pred CccccccccccccchhhhhhhhhhccccCcCC-CCchhHHHHHHHHHH--hhHHHHHHHHhhCCCCCCCCCChhhHHHHH
Q 009143 49 LPCTLNDIMSYVGDQCRSKTRHWFSNKDSDNE-GNPQAVFNALDLILK--ENLDRLKTMRDTGPVRCTLETDYRRHVAVI 125 (542)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 125 (542)
.|....-+.++...+...++.+.|+.+...+. .....+++.+...+. +..+.+..+++.++ .||..+|+.++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHH
Confidence 44444445555555566667777773333322 222334444444432 34566667777765 39999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChh
Q 009143 126 RDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (542)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (542)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (542)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 285 (542)
+|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+. ...||..+|+.++.+|++.|++++|.++|+
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~-gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH-PIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987432 233899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009143 286 DMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD 365 (542)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 365 (542)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009143 366 QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA 445 (542)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 445 (542)
..+|+.+|.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHH
Q 009143 446 ETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA----R-------------------GNMKEAEEVFAKI 502 (542)
Q Consensus 446 ~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m 502 (542)
+++.|++++|.+++++|.+.|+.||..+|++++..|.+ . +..++|..+|++|
T Consensus 764 -----~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 764 -----SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred -----HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 77889999999999999999999999999999876432 1 2246799999999
Q ss_pred hHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 503 QTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKW 537 (542)
Q Consensus 503 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (542)
.+.|+.||..+|+.++.++.+.+..+.+.++++.|
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 99999999999999998888888888888888776
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-63 Score=516.98 Aligned_cols=446 Identities=19% Similarity=0.278 Sum_probs=416.4
Q ss_pred chhHHHHHHHHHH-hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009143 83 PQAVFNALDLILK-ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVN 161 (542)
Q Consensus 83 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 161 (542)
...+...+..+.+ +.++.+.++++.++...-++++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 4456666766664 355667777777654333567888899999999999999999999999874 89999999999
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhH
Q 009143 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD 241 (542)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 241 (542)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009143 242 AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ--KNIQTDIVAYNVLINGFCLNGDISSAFAYF 319 (542)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 319 (542)
|.++|++|.+.+. . ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|
T Consensus 526 Al~lf~~M~~~Gv-~--PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 526 AFGAYGIMRSKNV-K--PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHcCC-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998876 6 9999999999999999999999999999986 578999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009143 320 CQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP 399 (542)
Q Consensus 320 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 399 (542)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009143 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITY 479 (542)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 479 (542)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+ |++.|++++|.++|++|.+.|+.||..||
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g-----y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA-----LCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999998 78899999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHh-----------------------cCChhHHHHHHHH
Q 009143 480 TELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRR-----------------------MKESDKARDIHQK 536 (542)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~ 536 (542)
+.++.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ .++.++|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876542 1345779999999
Q ss_pred Hhhc
Q 009143 537 WLLR 540 (542)
Q Consensus 537 ~l~~ 540 (542)
|++.
T Consensus 838 M~~~ 841 (1060)
T PLN03218 838 TISA 841 (1060)
T ss_pred HHHC
Confidence 9764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-60 Score=492.55 Aligned_cols=433 Identities=20% Similarity=0.263 Sum_probs=390.4
Q ss_pred hHHHHHHHHHH-hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009143 85 AVFNALDLILK-ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL 163 (542)
Q Consensus 85 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 163 (542)
.+...+..+.+ +..+.+..+++.+....++.||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44455555543 34455555555544333567999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 009143 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243 (542)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 243 (542)
++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||..++.++++.|..+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999984 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
+++..+.+.+. . ++..+|+.|+++|++.|++++|.++|++|. ++|..+|+.|+.+|++.|++++|+++|++|.
T Consensus 245 ~l~~~~~~~g~-~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 245 QLHCCVLKTGV-V--GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHhCC-C--ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999998876 5 889999999999999999999999999996 5789999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 009143 324 KRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHI 403 (542)
Q Consensus 324 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (542)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965 68899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 009143 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR-RGITPDIITYTEL 482 (542)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l 482 (542)
||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+ +++.|.+++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-----~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-----CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-----HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 999999999999999999999999999999999999999998 6788999999999999986 6999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 483 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
+++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+.+.|.++++++++.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999999999998766 46788888888888888888888888888877543
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-60 Score=502.89 Aligned_cols=420 Identities=23% Similarity=0.288 Sum_probs=364.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh----------------------
Q 009143 97 NLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVL---------------------- 154 (542)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------------------- 154 (542)
..+.+..+++.++ +||+.+||++|.+|++.|++++|+++|++|...|+.||..
T Consensus 136 ~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 136 ELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred ChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 4555556666654 4666777777777777777777777777776666655544
Q ss_pred -------------hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCC
Q 009143 155 -------------THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRP 221 (542)
Q Consensus 155 -------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 221 (542)
+++.++.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 45777888889999999999999884 5788999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (542)
|..||+.++.+|++.|+.+.|.+++..+.+.+. . +|..+|+.|+.+|++.|++++|.++|++|. .||..+|+.
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGF-A--VDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-c--cchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 999999999999999999999999999999886 6 899999999999999999999999999997 578999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (542)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.++++|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh--------------
Q 009143 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET-------------- 447 (542)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------------- 447 (542)
+++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|+
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 9999999999875 5788899999999999999999999999975 47788777777776554
Q ss_pred ----------------------------------------------cccccccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009143 448 ----------------------------------------------RGASCNLGHIHLALQLYDEMLRRGITPDIITYTE 481 (542)
Q Consensus 448 ----------------------------------------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 481 (542)
+.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 1235667788888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh-HcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 482 LIKGHCARGNMKEAEEVFAKIQ-TLGLAIDHIPFRILKKRYRRMKESDKARDIHQKW 537 (542)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (542)
++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|.+.|++++|.+++++|
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 8888888888888888888888 5788888888888888888888888888888887
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-58 Score=482.66 Aligned_cols=453 Identities=15% Similarity=0.222 Sum_probs=407.6
Q ss_pred hhhhhhhhhhccccC-cCCCCchhHHHH-HHHHHH-hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 009143 63 QCRSKTRHWFSNKDS-DNEGNPQAVFNA-LDLILK-ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALW 139 (542)
Q Consensus 63 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 139 (542)
+...++...|..... .....+...++. +..+.+ +..+....++..+. +.|+.||+.+|+.++..|++.|+++.|.+
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence 344455555552222 212223444554 444442 23444455554442 44889999999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCC
Q 009143 140 LRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGI 219 (542)
Q Consensus 140 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 219 (542)
+|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+
T Consensus 180 lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 180 LFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 9999964 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009143 220 RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAY 299 (542)
Q Consensus 220 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 299 (542)
.||..+|+.|+++|++.|++++|.++|++|.. +++.+||.++.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999853 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 009143 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (542)
Q Consensus 300 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (542)
+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999864 7899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHhhcccccccCChH
Q 009143 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS-FGVSSNVFTFNALILAETRGASCNLGHIH 458 (542)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~g~~~ 458 (542)
|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+ +++.|+++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~-----l~r~G~~~ 479 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL-----LGREGLLD 479 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH-----HHhcCCHH
Confidence 99999999999999999999999999999999999999999999999986 6999999999999998 88999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 009143 459 LALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 459 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 538 (542)
+|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.++ .+..+|..+++.|.+.|++++|.+++++|.
T Consensus 480 eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 480 EAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999876 5789999999999999999999999999999976532 257799999999999999999999999997
Q ss_pred hc
Q 009143 539 LR 540 (542)
Q Consensus 539 ~~ 540 (542)
+.
T Consensus 556 ~~ 557 (697)
T PLN03081 556 RK 557 (697)
T ss_pred Hc
Confidence 65
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-58 Score=487.53 Aligned_cols=417 Identities=21% Similarity=0.271 Sum_probs=374.9
Q ss_pred HHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHH
Q 009143 98 LDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIR 177 (542)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 177 (542)
.+.+..++..+. ..|+.||..||+.++.++++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+
T Consensus 269 ~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 269 CLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred HHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 344444444432 3367788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 009143 178 EMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKA 257 (542)
Q Consensus 178 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 257 (542)
+|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|. .
T Consensus 348 ~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~- 421 (857)
T PLN03077 348 RME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-I- 421 (857)
T ss_pred hCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC-C-
Confidence 884 4788899999999999999999999999999999999999999999999999999999999999998876 5
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009143 258 TSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTL 337 (542)
Q Consensus 258 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 337 (542)
++..+|+.|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+.+
T Consensus 422 -~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 422 -SYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 888999999999999999999999999987 46888999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 009143 338 LNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDL 417 (542)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 417 (542)
+.+|++.|.++.+.+++..+.+.|+.++..+++.++++|++.|++++|.++|+.+ .||..+||++|.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 47999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009143 418 SNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEML-RRGITPDIITYTELIKGHCARGNMKEAE 496 (542)
Q Consensus 418 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~ 496 (542)
++|.++|++|.+.|+.||..||+.++.+ +++.|.+++|.++|++|. +.|+.|+..+|++++++|++.|++++|.
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-----~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCA-----CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHH-----HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999998 778899999999999999 6899999999999999999999999999
Q ss_pred HHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 497 EVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 497 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
+++++|. ++||..+|++|+.+|...|+.+.++...+++++.
T Consensus 646 ~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 646 NFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999984 6799999999999999999999888888887654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-27 Score=259.38 Aligned_cols=402 Identities=16% Similarity=0.091 Sum_probs=310.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
+...+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|+.++|...++++.+..+ .+...+..++.
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 575 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQ 575 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHH
Confidence 44456666666677777777777777776653 33556666777777777777777777777766554 35566667777
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
.+.+.|++++|..+++.+.+. .+.+..+|..+...+...|++++|...++++.+..+ .+...+..+...+.+.|+
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP----DSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCC
Confidence 777777888888877777664 344667777788888888888888888888877665 566777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (542)
+++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...+..
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888887664 5567778888888888888888888888887764 45667777788888888888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 009143 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (542)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 436 (542)
+...+ |+..++..+...+.+.|++++|.+.+.++.+..+. +...+..+...|...|++++|...|+++.+.. +++.
T Consensus 729 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 804 (899)
T TIGR02917 729 ALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA 804 (899)
T ss_pred HHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH
Confidence 88754 44567777888888889999999988888887654 78888888899999999999999999988753 3455
Q ss_pred HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHH
Q 009143 437 FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRI 516 (542)
Q Consensus 437 ~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 516 (542)
..++.+... +...|+ .+|+.+++++.+.. +-+..++..+...+...|++++|..+++++.+.+.. +..++..
T Consensus 805 ~~~~~l~~~-----~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~ 876 (899)
T TIGR02917 805 VVLNNLAWL-----YLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYH 876 (899)
T ss_pred HHHHHHHHH-----HHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHH
Confidence 666666655 566778 77999999988753 234567778889999999999999999999997654 8899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhh
Q 009143 517 LKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
+..++.+.|+.++|.+++++|++
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.9e-26 Score=250.34 Aligned_cols=405 Identities=13% Similarity=0.053 Sum_probs=289.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
+++.+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+..+ .+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 455567777777777777777777777776643 23455566667777777777777777777766554 3566677777
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (542)
..+.+.|++++|..+++++...+ +.+...+..++..+.+.|++++|.++++++.+..+ .+...|..++..+...|
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP----DSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcC
Confidence 77777777777777777776553 33556666677777777777777777777776555 56677777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (542)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (542)
++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777777654 4566677777777777777777777777777653 3346677777777777778888887777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 356 VLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (542)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (542)
.+.+.+ +.+...+..+...+...|++++|.+.++++...++ +..++..++.++.+.|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 777654 34566677777777778888888888888777653 33666677777888888888888888777642 234
Q ss_pred HHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHH
Q 009143 436 VFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR 515 (542)
Q Consensus 436 ~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 515 (542)
...+..+... +...|+.++|...|+++.+.. +++...+..++..+...|+ .+|..+++++.+... .++.++.
T Consensus 770 ~~~~~~la~~-----~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~ 841 (899)
T TIGR02917 770 AVLRTALAEL-----YLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILD 841 (899)
T ss_pred HHHHHHHHHH-----HHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHH
Confidence 4455544444 566788888888888888754 3466778888888888888 778888888877532 3566677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 516 ILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
.+...+...|++++|.++++++++.+
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78888888899999999999888754
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.9e-21 Score=190.71 Aligned_cols=303 Identities=15% Similarity=0.078 Sum_probs=149.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHHc
Q 009143 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN---CATYNAFITGYCRV 201 (542)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 201 (542)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+......++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334455566666666666666652 22444566666666666666666666666655322111 13455556666666
Q ss_pred CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHhcCCHHHH
Q 009143 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS-DVITSTILMDSYFKNGDKFQA 280 (542)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 280 (542)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.++..... ....+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66666666666665431 2344555556666666666666666666655544311000 011233444455555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 281 LALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
.+.++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555432 22344444455555555555555555555554321111233444445555555555555555554443
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCC
Q 009143 361 GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR---CGDLSNAFSIRDLMLSFGVSS 434 (542)
Q Consensus 361 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p 434 (542)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 233333344444445555555555555544443 2344444444444332 234444555555444433333
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.6e-19 Score=186.44 Aligned_cols=401 Identities=13% Similarity=0.029 Sum_probs=285.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++..| .+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4567788899999999999999999875 57888899999999999999999999999998765 36778899999999
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC---------------------
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKAT--------------------- 258 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------- 258 (542)
..|++++|+..|......+-. +......++..... ..+.......++..+...+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 999999999888766543211 11111111111111 1111111111111110000
Q ss_pred -------C-cHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 259 -------S-DVITSTILMDSY---FKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 259 -------~-~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+ ....+..+...+ ...+++++|.+.|+...+.+ .+.....|..+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 000111111111 22367889999999988764 2335567888888888999999999999998876
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009143 326 GFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIW 404 (542)
Q Consensus 326 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (542)
.|+ ...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...|++.++..+. +...+
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 344 5678888888899999999999999888764 345778888888899999999999999999887654 67778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHH------
Q 009143 405 NVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN-VFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDII------ 477 (542)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------ 477 (542)
..+...+.+.|++++|+..|++..+. .|+ ...++.+-.. +...|++++|++.|++........+..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~-----~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGEL-----LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH-----HHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 88889999999999999999998874 343 3444444443 667899999999999988753211111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 478 TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
.++..+..+...|++++|.+++++..+... .+...+..+...+...|++++|.++|+++++.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 112222233346899999999999887643 34556888899999999999999999988654
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-21 Score=182.98 Aligned_cols=386 Identities=18% Similarity=0.131 Sum_probs=291.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhH-HHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATY-NAFI 195 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li 195 (542)
-..+|..+.+.+-..|++++|+++++.+++.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+.... ..+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 34578888888888888888888888888863 2256788888888888888888888888887754 444433 3344
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (542)
..+-..|+..+|...|.+..+. .|. ...|..|...+..+|+...|++.|++.++.++ .-..+|..|...|...
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP----~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP----NFLDAYINLGNVYKEA 265 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC----cchHHHhhHHHHHHHH
Confidence 4445578888888888887764 343 46778888888888888888888888888877 6677888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 009143 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHF 353 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 353 (542)
+.++.|...+.+..... +.....+..+...|...|..+-|++.|++..+. .|+ ...|+.|..++-..|++.+|.+.
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 88888888888887664 455677888888888888888888888888876 444 57788888888888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009143 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS 433 (542)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (542)
+....... +......+.|...|...|.+++|..+|....+-.+. -....+.|...|-++|++++|+..|++.++ +.
T Consensus 343 YnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 343 YNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 88887753 234567788888888888888888888888875432 345678888888888888888888888887 56
Q ss_pred CCH-HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCC-
Q 009143 434 SNV-FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID- 510 (542)
Q Consensus 434 p~~-~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~- 510 (542)
|+. ..|+.+-.. |-..|+++.|.+.+.+.+.. .|.- ..++.|...|-..|+..+|+.-+++..+. +||
T Consensus 419 P~fAda~~NmGnt-----~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDf 489 (966)
T KOG4626|consen 419 PTFADALSNMGNT-----YKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDF 489 (966)
T ss_pred chHHHHHHhcchH-----HHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCC
Confidence 764 445555443 66778888888888888874 4543 67788888888888888888888888775 344
Q ss_pred hhHHHHHHHHHHhcCCh
Q 009143 511 HIPFRILKKRYRRMKES 527 (542)
Q Consensus 511 ~~~~~~l~~~~~~~g~~ 527 (542)
+..|-.++.++.--.++
T Consensus 490 pdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 490 PDAYCNLLHCLQIVCDW 506 (966)
T ss_pred chhhhHHHHHHHHHhcc
Confidence 34455555554433333
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=7.4e-20 Score=201.00 Aligned_cols=395 Identities=14% Similarity=0.076 Sum_probs=267.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-HHhHH-----------
Q 009143 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN-CATYN----------- 192 (542)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~----------- 192 (542)
...+...|++++|+..|++.++.. +.+..++..+...|.+.|++++|+..|++..+..+... ...|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 456678899999999999998863 33678888999999999999999999999988665432 11221
Q ss_pred -HHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 009143 193 -AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (542)
Q Consensus 193 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (542)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++++..+ .+..++..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p----~~~~a~~~L~~l~ 429 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP----GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHH
Confidence 22446678899999999999998863 33566777888999999999999999999998776 4455554444443
Q ss_pred ------------------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 009143 272 ------------------------------------------FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (542)
Q Consensus 272 ------------------------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (542)
...|++++|.+.+++..+.. +.+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33455555555555555443 23344444555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---------hHHHHHHHHHhcC
Q 009143 310 GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQI---------SYKTIIQGLCIHG 380 (542)
Q Consensus 310 ~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g 380 (542)
|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555555554431 1122333333333444555555555554433221111110 1122344556667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHH
Q 009143 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLA 460 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A 460 (542)
+.++|.++++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+... +...|++++|
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~-----~~~~g~~~eA 656 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEV-----DIAQGDLAAA 656 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH-----HHHCCCHHHH
Confidence 77777777661 23466677888999999999999999999999852 2244556666655 6778999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCC--C---ChhHHHHHHHHHHhcCChhHHHHHHH
Q 009143 461 LQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLA--I---DHIPFRILKKRYRRMKESDKARDIHQ 535 (542)
Q Consensus 461 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (542)
++.++.+.+.. +.+..++..+..++...|++++|.++++++...... | +...+..+...+...|++++|.+.|+
T Consensus 657 ~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 657 RAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999888642 224566777888999999999999999999875322 2 23466777888999999999999999
Q ss_pred HHhh
Q 009143 536 KWLL 539 (542)
Q Consensus 536 ~~l~ 539 (542)
+++.
T Consensus 736 ~Al~ 739 (1157)
T PRK11447 736 DAMV 739 (1157)
T ss_pred HHHh
Confidence 9974
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.8e-21 Score=189.50 Aligned_cols=310 Identities=15% Similarity=0.102 Sum_probs=254.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCC---hHHHHHHHHH
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN---RVTHNILVHA 232 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~ 232 (542)
.......+...|++++|.+.|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ..++..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33344556788999999999999998765 4677899999999999999999999999987532222 2567888999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD----IVAYNVLINGFCL 308 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~ 308 (542)
|.+.|++++|.++|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999998765 7788999999999999999999999999988753332 2245677888899
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 009143 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREF 388 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 388 (542)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 3346678888899999999999999999998764333345688899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHH
Q 009143 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEML 468 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~ 468 (542)
++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. ....|+.+++..++++|.
T Consensus 272 l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~--~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 272 LRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA--EAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh--ccCCccchhHHHHHHHHH
Confidence 99998864 45566788999999999999999999998875 6898888888776321 123899999999999999
Q ss_pred hCCCCCCHH
Q 009143 469 RRGITPDII 477 (542)
Q Consensus 469 ~~g~~p~~~ 477 (542)
+.++.|++.
T Consensus 346 ~~~~~~~p~ 354 (389)
T PRK11788 346 GEQLKRKPR 354 (389)
T ss_pred HHHHhCCCC
Confidence 877777765
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=4.4e-19 Score=194.96 Aligned_cols=404 Identities=14% Similarity=0.075 Sum_probs=264.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC------------------C--------------CChhhH-------
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGT------------------V--------------PDVLTH------- 156 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~--------------p~~~~~------- 156 (542)
.++..+..+...+...|+.++|+..++++.+... . |+....
T Consensus 179 ~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L 258 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQL 258 (1157)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHH
Confidence 4566788899999999999999999998765321 0 110000
Q ss_pred --------------HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCC-
Q 009143 157 --------------NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRP- 221 (542)
Q Consensus 157 --------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 221 (542)
......+...|++++|+..|++..+..| .+...+..+...+.+.|++++|+..|++..+.....
T Consensus 259 ~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 259 AEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 0123456678999999999999988765 377888999999999999999999999988753221
Q ss_pred ChHHH------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 222 NRVTH------------NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 222 ~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
+...+ ......+.+.|++++|++.+++++...+ .+...+..+...+...|++++|++.|+++.+
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN----TDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 2234567789999999999999999877 6778888999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF--------LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (542)
.. +.+...+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|...+++..+..
T Consensus 414 ~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 414 MD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred hC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 64 344555555554442 2344444444433221100 0001122233344444555555555555554432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------------------------------
Q 009143 362 VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN------------------------------------ 405 (542)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------------------------ 405 (542)
+-+...+..+...|.+.|++++|...++++.+..+. +...+.
T Consensus 492 -P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 492 -PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 112334444444555555555555555554443222 222222
Q ss_pred --------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHH
Q 009143 406 --------VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDII 477 (542)
Q Consensus 406 --------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 477 (542)
.+...+...|++++|..+++. .+++...+..+-.. +.+.|++++|++.|++..+.. +.+..
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~-----~~~~g~~~~A~~~y~~al~~~-P~~~~ 638 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW-----AQQRGDYAAARAAYQRVLTRE-PGNAD 638 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 234445556666666666551 12233333333333 678899999999999999863 33568
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 478 TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
.+..++..|...|++++|.+.++...+.. +.+...+..+..++...|++++|.++++++++.
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88899999999999999999999887653 235566777888999999999999999998764
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.3e-21 Score=179.09 Aligned_cols=399 Identities=17% Similarity=0.146 Sum_probs=335.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
..-.+-..+.+..+++.....-...++.. +--..+|..+.+.+-..|++++|..+++.+.+..++ .+..|..+..++.
T Consensus 84 ~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~ 161 (966)
T KOG4626|consen 84 RLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALV 161 (966)
T ss_pred ceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHH
Confidence 33444456777777777766555555542 335678999999999999999999999999997763 7889999999999
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTH-NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
..|+.+.|.+.|.+..+. .|+.... ..+.......|++++|...+.+.++..+ .-..+|+.|...+-..|+..
T Consensus 162 ~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp----~fAiawsnLg~~f~~~Gei~ 235 (966)
T KOG4626|consen 162 TQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP----CFAIAWSNLGCVFNAQGEIW 235 (966)
T ss_pred hcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC----ceeeeehhcchHHhhcchHH
Confidence 999999999999998874 4665443 3455566678999999999999999877 77889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
.|+..|++....+ +.-...|-.|...|...+.+++|+..|.+..... +.....+..+...|...|.+|.|+..+++..
T Consensus 236 ~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 236 LAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 9999999999875 4457789999999999999999999999988762 3346778888889999999999999999998
Q ss_pred HCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-
Q 009143 359 KTGVAPD-QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV- 436 (542)
Q Consensus 359 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 436 (542)
+. .|+ ...|+.|..++-..|++.+|.+.+.+.+...+. .....+.|...|...|.+++|..+|....+ +.|.-
T Consensus 314 ~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a 388 (966)
T KOG4626|consen 314 EL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFA 388 (966)
T ss_pred hc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhh
Confidence 85 444 678999999999999999999999999987665 678899999999999999999999999988 45654
Q ss_pred HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHH
Q 009143 437 FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR 515 (542)
Q Consensus 437 ~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 515 (542)
...+.+-.. |-+.|++++|+..+++.++. .|+. ..|+.+...|-..|+.+.|...+.+.+..++. =...++
T Consensus 389 aa~nNLa~i-----~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhs 460 (966)
T KOG4626|consen 389 AAHNNLASI-----YKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHS 460 (966)
T ss_pred hhhhhHHHH-----HHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHh
Confidence 334444443 77889999999999999974 7775 78999999999999999999999999886432 356788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 516 ILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
.|...|..+|+..+|+.-|+.+|+.+
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999997653
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=9e-19 Score=180.16 Aligned_cols=334 Identities=10% Similarity=0.010 Sum_probs=269.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
-.-.++..+.+.|++++|..+++..+..... +...+..++.+....|+++.|.+.++++.+..| .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 3445677888999999999999999887433 455666777778889999999999999998776 36778888999999
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (542)
+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....+ .+...+..+. .+...|++++
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P----~~~~a~~~~~-~l~~~g~~~e 195 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP----PRGDMIATCL-SFLNKSRLPE 195 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC----CCHHHHHHHH-HHHHcCCHHH
Confidence 9999999999999998752 33567788899999999999999999998887766 4444444443 4788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 009143 280 ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE----ASHFYG 355 (542)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~ 355 (542)
|...++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999998876533455556666788899999999999999999874 4467778889999999999986 799999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 356 VLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (542)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (542)
...+.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..++.+.|++++|...|+++.+. .|+
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 988864 345778889999999999999999999999987655 6777888999999999999999999999874 455
Q ss_pred HHHHHHHHHHhhcccccccCChHHHHHHHHHHHhC
Q 009143 436 VFTFNALILAETRGASCNLGHIHLALQLYDEMLRR 470 (542)
Q Consensus 436 ~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~ 470 (542)
...+...... .+...|+.++|.+.|++..+.
T Consensus 351 ~~~~~~~~a~----al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 351 TSKWNRYAAA----ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred chHHHHHHHH----HHHHCCCHHHHHHHHHHHHHh
Confidence 4333322211 156789999999999999875
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.4e-18 Score=178.85 Aligned_cols=359 Identities=11% Similarity=0.021 Sum_probs=283.4
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhh
Q 009143 129 CLGGKIGTALWLRRKMIQK--GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDK 206 (542)
Q Consensus 129 ~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 206 (542)
.++.+++.-.-+|....+. ....+..-...++..+.+.|++++|..+++......+. +...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3455555544444443332 11123344556777788999999999999999987775 45556666677788999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (542)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 286 (542)
|...++++.... +.+...+..+...+...|++++|...+++++...+ .+...+..++..+...|++++|...++.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----GNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 999999998863 33567888899999999999999999999999876 7888999999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 009143 287 MFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ 366 (542)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 366 (542)
+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++...+.. +.+.
T Consensus 170 ~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 170 QAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 87764 3344444444 3478899999999999998876433445555666778899999999999999998864 3457
Q ss_pred hhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHH
Q 009143 367 ISYKTIIQGLCIHGDIVK----AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF-TFNA 441 (542)
Q Consensus 367 ~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ 441 (542)
..+..+...+...|++++ |...++++++..+. +...+..+...+.+.|++++|...+++..+. .|+.. .+..
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~ 323 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 788889999999999885 89999999987665 7889999999999999999999999999984 45543 3333
Q ss_pred HHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHcC
Q 009143 442 LILAETRGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 442 ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (542)
+... +...|++++|...++++.+. .|+. ..+..+..++...|++++|...|++..+..
T Consensus 324 La~~-----l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 324 YARA-----LRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHH-----HHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333 67889999999999999986 4554 334446778899999999999999998753
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.1e-18 Score=179.07 Aligned_cols=406 Identities=11% Similarity=0.008 Sum_probs=294.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
++..-.-.+......|+.++|+.++.+..... +.+...+..+...+...|++++|.+++++..+..| .+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 33334556667778899999999999988632 34555688899999999999999999999888655 35667778888
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
.+...|++++|+..++++.+. .+.+.. +..+..++...|+.++|...++++++..+ .+...+..+...+...|.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P----~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP----QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCC
Confidence 899999999999999999876 233455 88888888999999999999999999877 677777788888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hCCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HH
Q 009143 277 KFQALALWNDMFQKNIQTDI------VAYNVLINGFC-----LNGDI---SSAFAYFCQMLKR-GFLPDVI-TY----NT 336 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~~~~~-~~~p~~~-~~----~~ 336 (542)
.+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999988886654 2221 11122222222 12234 6788888888754 2233321 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 009143 337 LLNCLCKQGKLDEASHFYGVLSKTGVA-PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP---EPHIWNVIIDGYG 412 (542)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~ 412 (542)
.+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+..++++....... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456778999999999998887532 322 22235678889999999999999988654321 1345666777889
Q ss_pred hcCChHHHHHHHHHHHhCCC-----------CCCHH---HHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHH
Q 009143 413 RCGDLSNAFSIRDLMLSFGV-----------SSNVF---TFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIIT 478 (542)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~-----------~p~~~---~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 478 (542)
..|++++|...++.+.+... .|+.. .+...... +...|++++|++.++++.... +.+...
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~-----l~~~g~~~eA~~~l~~al~~~-P~n~~l 395 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV-----AKYSNDLPQAEMRARELAYNA-PGNQGL 395 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 99999999999999887421 12321 12222222 567799999999999998753 335678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 479 YTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
+..++..+...|++++|++.+++..+.. +.+...+...+..+...|++++|+++++++++.+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 8889999999999999999999988864 2346667777778899999999999999997653
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.4e-17 Score=175.14 Aligned_cols=232 Identities=11% Similarity=0.012 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009143 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQ 374 (542)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 374 (542)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...|+.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34444555555544 5666677766666654 355444333444456778888888888776553 344445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccccc
Q 009143 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNL 454 (542)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 454 (542)
.+.+.|+.++|...+++.++.++. +...+..+.....+.|++++|...+++..+. .|+...+..+-.. +.+.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~-----l~~l 622 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATI-----YRQR 622 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHH-----HHHC
Confidence 777788888888888888776532 3333334444445568888888888888874 4565556555544 6677
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 009143 455 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 534 (542)
Q Consensus 455 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (542)
|+.++|+..+++..+.. +.+...+..+..++...|++++|...+++..+..+ -+...+..+..++...|++++|...+
T Consensus 623 G~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88889988888888863 22456777888888888999999998888888643 46777888888889999999999999
Q ss_pred HHHhhcC
Q 009143 535 QKWLLRN 541 (542)
Q Consensus 535 ~~~l~~~ 541 (542)
+++++.+
T Consensus 701 ~~Al~l~ 707 (987)
T PRK09782 701 RLVIDDI 707 (987)
T ss_pred HHHHhcC
Confidence 8886543
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.2e-17 Score=172.49 Aligned_cols=397 Identities=13% Similarity=0.011 Sum_probs=285.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 009143 96 ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHV 175 (542)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 175 (542)
+.++.+...++... .+.|+...|..+...|.+.|++++|+..++..++.. +.+...|..+..+|...|++++|+.-
T Consensus 141 ~~~~~Ai~~y~~al---~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAI---ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455555444432 456788889999999999999999999999999864 33567899999999999999999988
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHH---------------------------CCCCCCh-HHHH
Q 009143 176 IREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN---------------------------NGIRPNR-VTHN 227 (542)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------------------~g~~p~~-~~~~ 227 (542)
|..+.......+.. ...++..+.......++...++.-.. ....+.. ..+.
T Consensus 217 ~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 217 LTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 87665543322221 11111111111001111111110000 0000000 0111
Q ss_pred HHHHH---HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 228 ILVHA---LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 228 ~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
.+... ....+++++|.+.|++.+..+. ..+.....++.+...+...|++++|+..+++..+.. +.+...|..+..
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 11111 1234688999999999998653 112567789999999999999999999999999874 445778999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 009143 305 GFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 384 (542)
.+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998874 4467889999999999999999999999998864 3356778888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHH-HHhhcccccccCChHHHH
Q 009143 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN--ALI-LAETRGASCNLGHIHLAL 461 (542)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll-~~~~~~~~~~~g~~~~A~ 461 (542)
|+..+++.++..+. +...|+.+...+...|++++|.+.|++..+.....+....+ .++ .+.. .+...|++++|.
T Consensus 452 A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~--~~~~~~~~~eA~ 528 (615)
T TIGR00990 452 SMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA--LFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH--HHHHhhhHHHHH
Confidence 99999999986544 68899999999999999999999999988743211111111 111 1100 033469999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 462 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 462 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
+++++..... +.+...+..++..+.+.|++++|.+.|++..+.
T Consensus 529 ~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 529 NLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999998863 223467889999999999999999999999875
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=8.1e-16 Score=158.78 Aligned_cols=432 Identities=11% Similarity=-0.002 Sum_probs=308.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhCCCCCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 009143 88 NALDLILKENLDRLKTMRDTGPVRCTLETDY--RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK 165 (542)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 165 (542)
.++...-.+..+.+...+.... ...|+. ..+ .++..+...|+.++|+..+++.... ...+......+...|..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL---~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEES---KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH---hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 3444444444444444443332 233543 234 7888888889999999999998822 12223333344667888
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHH
Q 009143 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKF 245 (542)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 245 (542)
.|++++|+++|+++.+..|. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 89999999999999998775 5677778888899999999999999998775 46666665555555556677679999
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHH-----HhCCC-
Q 009143 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAY--------NVLINGF-----CLNGD- 311 (542)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~~-----~~~~~- 311 (542)
++++++..+ .+...+..+...+.+.|-...|.++..+-.+. .+...+ ..+++.- ....+
T Consensus 192 ~ekll~~~P----~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 192 SSEAVRLAP----TSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHhCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 999999887 78888899999999999998888777654321 111111 1111110 01122
Q ss_pred --HHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 009143 312 --ISSAFAYFCQMLKR-GFLPDV-----ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIV 383 (542)
Q Consensus 312 --~~~A~~~~~~~~~~-~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 383 (542)
.+.|+.-++.+... +..|.. ....-.+-++...|+..++++.++.+...+.+....+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34455555555542 222322 1223445678889999999999999998886655668889999999999999
Q ss_pred HHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------------CCCCHHHHHHHHHH
Q 009143 384 KAREFLLSMLEKSV-----VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG-------------VSSNVFTFNALILA 445 (542)
Q Consensus 384 ~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~ll~~ 445 (542)
+|..+++.+..... .++......|.-+|...+++++|..+++.+.+.. ..||-..+..+...
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999976542 2344446789999999999999999999998731 22343444333333
Q ss_pred hhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcC
Q 009143 446 ETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK 525 (542)
Q Consensus 446 ~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 525 (542)
+ +...|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++...... +.+..+....+.++...|
T Consensus 425 ~----~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 425 S----LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQ 498 (822)
T ss_pred H----HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhh
Confidence 2 567799999999999998864 4478889999999999999999999997777663 335677778888999999
Q ss_pred ChhHHHHHHHHHhhc
Q 009143 526 ESDKARDIHQKWLLR 540 (542)
Q Consensus 526 ~~~~A~~~~~~~l~~ 540 (542)
++.+|.++.++.++.
T Consensus 499 e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 499 EWHQMELLTDDVISR 513 (822)
T ss_pred hHHHHHHHHHHHHhh
Confidence 999999999887654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.1e-16 Score=166.23 Aligned_cols=389 Identities=12% Similarity=0.012 Sum_probs=283.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
.+...+..+...+...|++++|..++++.++.. +.+...+..++..+...|++++|...++++.+..| .+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHH
Confidence 455578999999999999999999999998863 34567788889999999999999999999998765 3566 88899
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CCCcHHHHHHHHHHHH--
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK-ATSDVITSTILMDSYF-- 272 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 272 (542)
.++...|+.++|+..++++.+.. +.+...+..+...+...|..++|.+.++.+.. .+.. ..........++....
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999863 33556667788888899999999999987654 2100 0000112222333332
Q ss_pred ---hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 009143 273 ---KNGDK---FQALALWNDMFQK-NIQTDIV-AY----NVLINGFCLNGDISSAFAYFCQMLKRGFL-PDVITYNTLLN 339 (542)
Q Consensus 273 ---~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~li~ 339 (542)
..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.. |+. ....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 22234 7788888888854 1122221 11 11134556779999999999999987532 332 2233577
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HH
Q 009143 340 CLCKQGKLDEASHFYGVLSKTGVAP---DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-----------VPE---PH 402 (542)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~ 402 (542)
.|...|++++|...|+.+.+..... .......+..++.+.|++++|.++++.+.+..+ .|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 8999999999999999987653211 123456667788999999999999999987642 123 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 009143 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV-FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPD-IITYT 480 (542)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 480 (542)
.+..+...+...|++++|+++++++... .|+. ..+..+... +...|++++|++.+++..+. .|+ ...+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l-----~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~ 431 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV-----LQARGWPRAAENELKKAEVL--EPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhh--CCCChHHHH
Confidence 4567788899999999999999999874 3443 344444443 66789999999999999986 455 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHH
Q 009143 481 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 521 (542)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 521 (542)
.++..+...|++++|..+++++.+. .|+......+-..+
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 7788899999999999999999985 35555444444433
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=5e-15 Score=152.97 Aligned_cols=400 Identities=12% Similarity=0.020 Sum_probs=291.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV--LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (542)
|... -...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+ ........+...+
T Consensus 38 y~~a-ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSL-IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAY 112 (822)
T ss_pred HHHH-HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHH
Confidence 4433 35678999999999999999863 443 234 888889999999999999999973221 2233334446688
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++....+ +...+..++..+...++..
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-----TVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-----chHHHHHHHHHHHhcchHH
Confidence 88999999999999999874 33567777888999999999999999999988764 3444555555555567776
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHH-----HhcCC-
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT------YNTLLNCL-----CKQGK- 346 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~------~~~li~~~-----~~~g~- 346 (542)
+|++.++++.+.. +.+...+..+..++.+.|-...|+++..+-... +.+...- ...+++.- ...++
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 7999999999986 667888899999999999999998877653321 1111110 11111110 01122
Q ss_pred --HHHHHHHHHHHHHC-CCCCCh-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 009143 347 --LDEASHFYGVLSKT-GVAPDQ-I----SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (542)
Q Consensus 347 --~~~A~~~~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (542)
.+.|+.-++.+... +..|.. . ...-.+-++...|++.++++.++.+...+.+....+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34455555555542 222322 2 222344567789999999999999998886656678889999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCC-----------CCCH---HHH
Q 009143 419 NAFSIRDLMLSFG-----VSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGI-----------TPDI---ITY 479 (542)
Q Consensus 419 ~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~-----------~p~~---~~~ 479 (542)
+|..+|+.+.... ..++......|..+ +...+++++|..+++++.+... .||. ..+
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA-----~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYS-----LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHH-----HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 9999999997642 12233334556655 6677999999999999998311 1222 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 480 TELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
..++..+...|++.+|++.++++.... +-|......+.+.+...|++.+|++.++.++.
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 456778889999999999999998864 45899999999999999999999999988643
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.4e-16 Score=152.87 Aligned_cols=413 Identities=14% Similarity=0.068 Sum_probs=273.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTV--PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (542)
.|+...+.|.+.|.-.|++..+..+...++..... .-...|..+.++|-..|++++|...|.+..+..+..-+..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 57788899999999999999999999998876321 1234578899999999999999999988887654332455667
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG----LLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (542)
+...|.+.|+.+.+...|+...+. .+-+..|...|...|...+ ..+.|..++.+..+..+ .|...|..+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~----~d~~a~l~laq 422 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP----VDSEAWLELAQ 422 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc----ccHHHHHHHHH
Confidence 889999999999999999999876 3445677778888777765 56788888888888766 88889988888
Q ss_pred HHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC------HHHHHH
Q 009143 270 SYFKNGDKFQALALWNDMF----QKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR---GFLPD------VITYNT 336 (542)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~p~------~~~~~~ 336 (542)
.+....-+.. +.+|.... ..+-++.+...|.+...+...|+++.|...|...... ...+| ..+--.
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 8876554444 66665543 4455688889999999999999999999999988754 12222 223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009143 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPD-QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG 415 (542)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 415 (542)
+...+-..++.+.|.+.|..+.+.. |. +..|..+.......+...+|...++..+..+-. ++..+..+...+.+..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhh
Confidence 5666677788888888888888753 33 333444433333346677777777777665432 5555555555555555
Q ss_pred ChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhc-----------------------------------------ccccc
Q 009143 416 DLSNAFSIRDLMLSFG-VSSNVFTFNALILAETR-----------------------------------------GASCN 453 (542)
Q Consensus 416 ~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-----------------------------------------~~~~~ 453 (542)
.+..|.+-|..+.+.. ..+|.++..+|-..|.. -.++.
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 5555555444443311 12333333333222220 01445
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH-cCCCCChhHHHHHHHHHHhcCChhHHHH
Q 009143 454 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-LGLAIDHIPFRILKKRYRRMKESDKARD 532 (542)
Q Consensus 454 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 532 (542)
.|++.+|..+|.+.++... -...+|..+.++|...|+|..|+++|+...+ .....+..+...|.+++...|++.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 5666666666666655322 1334555566666666666666666665544 3334455555666666666666666666
Q ss_pred HHHHHh
Q 009143 533 IHQKWL 538 (542)
Q Consensus 533 ~~~~~l 538 (542)
...+++
T Consensus 738 ~ll~a~ 743 (1018)
T KOG2002|consen 738 ALLKAR 743 (1018)
T ss_pred HHHHHH
Confidence 655553
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=7.6e-15 Score=154.81 Aligned_cols=156 Identities=12% Similarity=-0.078 Sum_probs=110.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhhccccc
Q 009143 374 QGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT-FNALILAETRGASC 452 (542)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~ 452 (542)
..+...|++++|...++++... .|+...+..+..++.+.|++++|...++...+.. |+... +..+... ..
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~-----l~ 587 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQ-----RY 587 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHH-----HH
Confidence 3344667777777777776543 2333445566666777777777777777777643 33322 2111111 23
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHH
Q 009143 453 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARD 532 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 532 (542)
..|++++|...+++..+. .|+...|..+..++.+.|++++|...+++..+..+ .+...+..+..++...|+.++|++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 458899999999888875 56778888888899999999999999999888643 366777888888999999999999
Q ss_pred HHHHHhhcC
Q 009143 533 IHQKWLLRN 541 (542)
Q Consensus 533 ~~~~~l~~~ 541 (542)
.++++++.+
T Consensus 665 ~l~~AL~l~ 673 (987)
T PRK09782 665 MLERAHKGL 673 (987)
T ss_pred HHHHHHHhC
Confidence 999887643
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.5e-14 Score=128.24 Aligned_cols=408 Identities=13% Similarity=0.116 Sum_probs=289.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--HcCChhHH-HHHHHHH---------------
Q 009143 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELC--KIGDLEKA-DHVIREM--------------- 179 (542)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A-~~~~~~~--------------- 179 (542)
+.+=|.|+.. ..+|.+.++.-+|+.|.+.|+..+...-..|++.-+ ...++--| .+-|-.|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3455666654 567899999999999999988877766666555432 11111111 1111111
Q ss_pred -----hhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 180 -----SEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 180 -----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
.+.-| .+..++..||.++|+.-..+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|.....
T Consensus 195 vAdL~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 11113 3668999999999999999999999999988878889999999987655332 2778888887755
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHc----
Q 009143 255 GKATSDVITSTILMDSYFKNGDKFQ----ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS-AFAYFCQMLKR---- 325 (542)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~---- 325 (542)
. ||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.+....
T Consensus 270 -~--Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 270 -T--PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred -C--CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 5 999999999999999998765 56778899999999999999999999999888754 55555555432
Q ss_pred CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009143 326 GFL----PDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG----VAPD---QISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (542)
Q Consensus 326 ~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (542)
.++ .|...|...+..|.+..+.+.|.++..-..... +.|+ ..-|..+....|+....+.-...++.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122 245667888899999999999999887664321 2333 22466777788999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccC-------------------
Q 009143 395 KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLG------------------- 455 (542)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g------------------- 455 (542)
.-.-|+..+...++++..-.|.++-.-++|..++..|..-+...-.-++.-+ +...
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L-----~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL-----ARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH-----hcCCCCCCChHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999988876433322222222221 1111
Q ss_pred --ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcC-CCCChhHHH---HHHHHHHhcCChhH
Q 009143 456 --HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG-LAIDHIPFR---ILKKRYRRMKESDK 529 (542)
Q Consensus 456 --~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~---~l~~~~~~~g~~~~ 529 (542)
-.+....--.+|... .......+...-.+.+.|+.++|.+++....+.+ --|-....+ -+++.-.+.+....
T Consensus 502 ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 011111111223333 3344566777778899999999999999986543 223333344 56677788889999
Q ss_pred HHHHHHHHhhcC
Q 009143 530 ARDIHQKWLLRN 541 (542)
Q Consensus 530 A~~~~~~~l~~~ 541 (542)
|...++-|++.|
T Consensus 580 A~~~lQ~a~~~n 591 (625)
T KOG4422|consen 580 AIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcC
Confidence 999998886544
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.7e-15 Score=145.80 Aligned_cols=426 Identities=16% Similarity=0.103 Sum_probs=274.8
Q ss_pred CCCchhHHHHHHHHH--HhhHHHHHHHHhhCCCCCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 009143 80 EGNPQAVFNALDLIL--KENLDRLKTMRDTGPVRCTLE-TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTH 156 (542)
Q Consensus 80 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 156 (542)
.+.++.+.+.|...+ ++++.++..+........... --..+|..+.++|-..|+++.|...|.+..+....--+..+
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 344556666665443 556655555544432100000 12236888999999999999999999988875322123455
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC----ChhhHHHHHHHHHHCCCCCChHHHHHHHHH
Q 009143 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN----ELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (542)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 232 (542)
.-|.+.|.+.|+++.+...|+.+.+..| .+..+...|...|...+ ..++|..++....+. .+.|...|..+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHH
Confidence 6688999999999999999999998765 36677777777777764 455666666665554 23466677666666
Q ss_pred HHhcCChhHHHHHHHHHH----hCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC------HHHH
Q 009143 233 LCKKGLLGDAVKFLGEVL----ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK---NIQTD------IVAY 299 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~------~~~~ 299 (542)
+....-+.. +..+..+. ..+. . ......|.+...+...|+++.|...|...... ...++ ..+-
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~-~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGK-Q--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCC-C--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 554433333 55555444 2222 2 55667777777777778877777777776554 11122 2222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC---------------------------------CCCCHHHHHHHHHHHHhcCC
Q 009143 300 NVLINGFCLNGDISSAFAYFCQMLKRG---------------------------------FLPDVITYNTLLNCLCKQGK 346 (542)
Q Consensus 300 ~~li~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~p~~~~~~~li~~~~~~g~ 346 (542)
..+...+-..++.+.|.+.|....+.. ...++..++.+...+.+...
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 334444444555666666665555441 11222333333334444444
Q ss_pred HHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009143 347 LDEASHFYGVLSKT-GVAPDQISYKTIIQGLCI------------HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (542)
Q Consensus 347 ~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (542)
+..|.+-|..+.+. ...+|..+...|.+.|.+ .+..++|+++|.+++..++. |...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhh
Confidence 44444444444332 112454555555554432 24578899999999998776 89999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCH
Q 009143 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHCARGNM 492 (542)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~ 492 (542)
.|++.+|..+|....+... -...+|..+-++ |..+|++..|+++|+...+ ....-+..+...|.+++.+.|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~-----~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHC-----YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHH-----HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 9999999999999998543 122345555554 6677999999999998776 44455778899999999999999
Q ss_pred HHHHHHHHHHhHcCCCCChhHHHHHH
Q 009143 493 KEAEEVFAKIQTLGLAIDHIPFRILK 518 (542)
Q Consensus 493 ~~A~~~~~~m~~~g~~~~~~~~~~l~ 518 (542)
.+|.+.+.......+......||..+
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999999888865544444555443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.5e-13 Score=124.27 Aligned_cols=380 Identities=14% Similarity=0.176 Sum_probs=253.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHH
Q 009143 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (542)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (542)
+.+..+|..+|.++|+--..++|.+++++......+.+..+||.+|.+-.-... .+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 356778999999999999999999999988877677788889988877443322 6777888888888999999999
Q ss_pred HHHHHHcCChhh----HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhH-HHHHHHHHHhC------CCCCCCCcHHH
Q 009143 195 ITGYCRVNELDK----ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD-AVKFLGEVLAD------DDGKATSDVIT 263 (542)
Q Consensus 195 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~------~~~~~~~~~~~ 263 (542)
+.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++... .+ ..+.+...
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp-~~p~d~~F 358 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP-ITPTDNKF 358 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC-CCCchhHH
Confidence 999999997764 46778888999999999999999998888877644 44455554432 11 23356677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKN----IQTD---IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNT 336 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 336 (542)
|...+..|....+.+-|.++..-+.... +.|+ ..-|..+....|.....+.....|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7888888888888888888776665321 2233 23456677777888888888888888887767788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C
Q 009143 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-G 415 (542)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 415 (542)
++++....|.++-.-+++..++..|..-+.. + -++++..+....+.|+...-..+-.+..+. -
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-----l-----------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSD-----L-----------REEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-----H-----------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 8888888888888888888887765322211 1 223334444444344322211111111111 1
Q ss_pred ChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcC
Q 009143 416 DLSN-AFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGI----TPDIITYTELIKGHCARG 490 (542)
Q Consensus 416 ~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~----~p~~~~~~~li~~~~~~g 490 (542)
++.+ ....-.+|.+....|....-.+++ +.+.|..++|.+++.-+.+.+- .|......-+++.-.+.+
T Consensus 503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~L-------l~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWPATSLNCIAIL-------LLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHhhHHHHHhccCChhHHHHHHHH-------HHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 2222 222334455555555544433333 5577999999999998865332 233344446667777888
Q ss_pred CHHHHHHHHHHHhHcCCCCChhHHHHHHHHHH
Q 009143 491 NMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR 522 (542)
Q Consensus 491 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 522 (542)
.+..|..+++-|...+...-...-+.+...|.
T Consensus 576 spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred CHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 89999999998877654322223344444443
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1e-14 Score=127.07 Aligned_cols=302 Identities=13% Similarity=0.172 Sum_probs=233.0
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHhhCCCCCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHH
Q 009143 82 NPQAVFNALDLILKENLDRLKTMRDTGPVRCTLET-DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD---VLTHN 157 (542)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~ 157 (542)
-|+.+++.++.++++..+++.+.|-.+. ...| +..+..+|.+.|.+.|..+.|+++++.+.++.-.+. ..+..
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l---~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEML---QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHH---hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4678999999999888888877777665 2233 445788999999999999999999999998632222 22345
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh----HHHHHHHHHH
Q 009143 158 YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR----VTHNILVHAL 233 (542)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~ 233 (542)
.|..-|...|-+|+|+.+|..+.+.+. --......|+..|-...+|++|+++-+++.+.|-++.. .-|..+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 577779999999999999999877443 34567788999999999999999999999887655442 3456677777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009143 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS 313 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 313 (542)
....+++.|..++.+..+.++ ..+.+-..+.+.+...|+++.|.+.|+.+.+.+..--..+...|..+|...|+.+
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~----~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 191 LASSDVDRARELLKKALQADK----KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCc----cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 778899999999999999887 7788888899999999999999999999998875556677888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHH
Q 009143 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI---HGDIVKAREFLL 390 (542)
Q Consensus 314 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 390 (542)
+....+..+.+. .++...-..+...-....-.+.|...+.+-.+. .|+...+..+++.... .|...+...+++
T Consensus 267 ~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 267 EGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 999999988886 444444555555555555666777666655553 5888888888887654 334556666666
Q ss_pred HHHhC
Q 009143 391 SMLEK 395 (542)
Q Consensus 391 ~~~~~ 395 (542)
+|...
T Consensus 343 ~mvge 347 (389)
T COG2956 343 DMVGE 347 (389)
T ss_pred HHHHH
Confidence 66643
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=6.5e-14 Score=136.89 Aligned_cols=294 Identities=12% Similarity=0.064 Sum_probs=166.8
Q ss_pred HcCChhhHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
..|+++.|.+.+.+..+. .|+. ..+.....+..+.|+.+.|.+.+.++.+..+ . +...+.......+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p-~--~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG-N--DNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c--CchHHHHHHHHHHHHCCCHH
Confidence 456666666666555443 2332 2333344555555666666666666554332 1 11223333355555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
.|...++.+.+.. |-++..+..+...+...|++++|.+.+..+.+.+.. +...+..+-.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~------------------- 229 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ------------------- 229 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH-------------------
Confidence 5555555555553 334445555555555555555555555555554322 1111111000
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV---VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (542)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (542)
....++...+..+++.+.+..+.+..+ +.++..+..+...+...|+.++|.+++++..+. .||
T Consensus 230 ------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd 295 (409)
T TIGR00540 230 ------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGD 295 (409)
T ss_pred ------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCC
Confidence 000011111222222333333333222 126667777777777777777777777777764 233
Q ss_pred HHH--HHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCC
Q 009143 436 VFT--FNALILAETRGASCNLGHIHLALQLYDEMLRRGITPD-I--ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 510 (542)
Q Consensus 436 ~~~--~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (542)
... +..+... .....++.+.+.+.+++..+. .|+ + ....++.+.+.+.|++++|.+.|++.......|+
T Consensus 296 ~~~~~~~~l~~~----~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 296 DRAISLPLCLPI----PRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred cccchhHHHHHh----hhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 321 1111111 133457788888888888774 333 3 5567899999999999999999996554444688
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 511 HIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
...+.++...+.+.|+.++|.++|++.+.
T Consensus 370 ~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 370 ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888999999999999999999999754
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=5.9e-12 Score=119.90 Aligned_cols=407 Identities=13% Similarity=0.036 Sum_probs=229.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--CH
Q 009143 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMI----QKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--NC 188 (542)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 188 (542)
+.+...|.+-...--.+|+.+....+.++-+ ..|+..+...|..=...+-..|.+-.+..+.......|+.- --
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 3566677766666667777777777666533 34666666667666666666666666666666666555432 13
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (542)
.+|+.-...|.+.+.++-|..+|....+. ++-+...|...+..--..|..+....++++++..-+ .....|....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p----kae~lwlM~a 591 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP----KAEILWLMYA 591 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----cchhHHHHHH
Confidence 45666666666666666666666666553 233444555555444455666666666666665443 4455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (542)
..+-..|++..|..++....+.. +.+...|-.-+..-....+++.|..+|.+.... .|+...|..-+..---.++.+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 56666666666666666666554 335555666666666666666666666665543 445555544444444455566
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
+|.+++++..+. ++.-...|..+.+.+-+.++++.|.+.|..-.+.-+ -.+..|-.|...-.+.|++-.|..++++..
T Consensus 669 eA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 669 EALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 666666555553 222233444444555555555555555544433321 133344444444445555555555555544
Q ss_pred hCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhC-----------------------------CCCCCHHHH
Q 009143 429 SFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRR-----------------------------GITPDIITY 479 (542)
Q Consensus 429 ~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~-----------------------------g~~p~~~~~ 479 (542)
-.+ +-+...|...|.. -.+.|..+.|..++.+.++. ...-|+...
T Consensus 747 lkN-Pk~~~lwle~Ir~-----ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 747 LKN-PKNALLWLESIRM-----ELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred hcC-CCcchhHHHHHHH-----HHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 432 2233444444443 33445555555544444432 012355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 009143 480 TELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 538 (542)
..+...+....++++|.+.|.+..+.+. ....+|.-+...+.+.|.-++-.+++++..
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5666666677777777777777777543 245667777777777777777777776653
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5e-12 Score=115.97 Aligned_cols=425 Identities=13% Similarity=0.104 Sum_probs=320.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHHcCChhHHHHH
Q 009143 97 NLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVL-THNYLVNELCKIGDLEKADHV 175 (542)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~ 175 (542)
...+++.+++.... +-..+...|...+..=.++..+..|..++++.+.. -|.+. .|--.+..=-..|++..|.++
T Consensus 88 e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 88 EIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45677777766431 11346668888999999999999999999999875 44443 344445555567999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 009143 176 IREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG 255 (542)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 255 (542)
|++-.+ ..|+...|++.|..=.+.+.++.|..++++..- +.|++.+|....+.-.+.|+...+..++..+++.-.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~- 238 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG- 238 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-
Confidence 999877 578999999999999999999999999999986 459999999999999999999999999998887432
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHH--------HHHHHHc
Q 009143 256 KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD--IVAYNVLINGFCLNGDISSAFAY--------FCQMLKR 325 (542)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~--------~~~~~~~ 325 (542)
....+...+.+...--.++..++.|.-+|.-.++.- +.+ ...|......--+-|+.....+. |+.+.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 111345567777777777888999999999888763 222 34455555544445654443332 3334444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-----HH---HhcCCHHHHHHHHHHHHhC
Q 009143 326 GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQI--SYKTIIQ-----GL---CIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~-----~~---~~~g~~~~A~~~~~~~~~~ 395 (542)
+ +.|-.+|-..++.-...|+.+...++|+..+.. ++|-.. .|...|- ++ ....+++.+.++++..++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 557778888888888899999999999999875 455221 1222221 11 2468999999999999884
Q ss_pred CCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCC
Q 009143 396 SVVPEPHIWNVIIDGY----GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRG 471 (542)
Q Consensus 396 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g 471 (542)
++....||..+--.| .++.+...|.+++...+ |..|-..+|...|.. -.+.++++.+.+++++.++.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIel-----ElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIEL-----ELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHH-----HHHHhhHHHHHHHHHHHHhcC
Confidence 333555665554444 46889999999998877 468888888888875 667899999999999999975
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhcCC
Q 009143 472 ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG-LAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 542 (542)
Q Consensus 472 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~k 542 (542)
. -|..+|......-...|+.+.|..+|+-..+.. .......|.+.++--...|.+++|..+|++.|+..+
T Consensus 468 P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 468 P-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred h-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 3 366889888888888999999999999988752 333456678888888899999999999999998753
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1.8e-13 Score=132.94 Aligned_cols=292 Identities=11% Similarity=0.069 Sum_probs=162.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 009143 201 VNELDKALHLFSTMANNGIRPNRV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (542)
.|++++|.+.+....+.. +++. .|.....+..+.|+++.|.+.+.++.+..+ . ............+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~-~--~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELAD-N--DQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-c--chHHHHHHHHHHHHHCCCHHH
Confidence 466666665555544321 1222 222223333556666666666666655432 1 111121222445555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 280 ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
|...++++.+.. |-++..+..+...|.+.|++++|.+++..+.+.+..+ ......+-.
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~-------------------- 229 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQ-------------------- 229 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHH--------------------
Confidence 555555555544 3445555555555555555555555555555543221 111110000
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 009143 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTF 439 (542)
Q Consensus 360 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 439 (542)
.+|..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|.+++++..+. .|+....
T Consensus 230 -------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 230 -------QAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 011222222222333444455555543322 236667777777777788888888777777763 3343211
Q ss_pred HHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHH
Q 009143 440 NALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKK 519 (542)
Q Consensus 440 ~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 519 (542)
. +.+ ....++.+++++..++..+.. +-|+..+..+...+.+.|++++|.+.|+++.+. .|+...+..+..
T Consensus 300 ~--l~~-----~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~ 369 (398)
T PRK10747 300 L--LIP-----RLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLAD 369 (398)
T ss_pred H--HHh-----hccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 1 111 334477888888888777652 234556777888888888888888888888775 577777778888
Q ss_pred HHHhcCChhHHHHHHHHHhh
Q 009143 520 RYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~l~ 539 (542)
.+.+.|+.++|.++|++.+.
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 88888888888888888754
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.2e-12 Score=129.32 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=87.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHH
Q 009143 130 LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (542)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (542)
-.|++++|..++.+.++.. +.+...|.+|...|-+.|+.+++...+-......|+ |...|..+.....+.|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence 3355555555555555442 224445555555555555555555544444433332 34555555555555555555555
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 009143 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI----TSTILMDSYFKNGDKFQALALWN 285 (542)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~ 285 (542)
.|.+..+.. +++...+-.-...|-+.|+...|..-|.++....+ . .+.. .--..++.+...++.+.|.+.++
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~--~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-P--VDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-c--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555442 22333333344445555555555555555554433 1 1111 11122333444444455555554
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 286 DMFQK-NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 286 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
..... +-..+...++.++..+.+...++.|......+..
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 44431 1123334445555555555555555555444443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1e-13 Score=126.11 Aligned_cols=214 Identities=18% Similarity=0.180 Sum_probs=161.8
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 009143 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKARE 387 (542)
Q Consensus 308 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (542)
..|++++|.+.|++.+.....-....|+ +.-.+-..|++++|++.|-++... +..+..+...+...|-...+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3688999999999988763222222233 334567889999999998776553 23467788888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHH
Q 009143 388 FLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEM 467 (542)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~ 467 (542)
++.+.... ++.|+.....|...|-+.|+-.+|++.+-+--+ ..|......-.+.+| |....-+++++.+|++.
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ay----yidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAY----YIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHH----HHhhHHHHHHHHHHHHH
Confidence 99888765 344899999999999999999999988665444 344433333344443 66778899999999987
Q ss_pred HhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 009143 468 LRRGITPDIITYTELIKGHC-ARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 534 (542)
Q Consensus 468 ~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (542)
.- +.|+..-|..|+..|. +.|++++|.++++..... ++-|.....-|++.+...|.. ++.++-
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~ 716 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYA 716 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHH
Confidence 65 5899999998887665 589999999999998875 566888888888888777753 334433
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=5.1e-13 Score=121.64 Aligned_cols=359 Identities=15% Similarity=0.109 Sum_probs=238.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC------------CC
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS------------PN 187 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~ 187 (542)
..+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|...... |+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 5566666777888888888888887764 577766666666666678888888888877653211 22
Q ss_pred HHhHHHHH-----HHHHHcCC--hhhHHHHHHHHHHCCCCCCh---------------------HHHHHHHHHHHhcCCh
Q 009143 188 CATYNAFI-----TGYCRVNE--LDKALHLFSTMANNGIRPNR---------------------VTHNILVHALCKKGLL 239 (542)
Q Consensus 188 ~~~~~~li-----~~~~~~g~--~~~A~~~~~~m~~~g~~p~~---------------------~~~~~l~~~~~~~g~~ 239 (542)
....+..| .-.-+.++ .++++-.--++..--+.|+- ..-..-...+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222211 11111111 11111111111111111110 0001123345566666
Q ss_pred hHHHHHHHHHHhCCCCCCC---------------------------------CcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 240 GDAVKFLGEVLADDDGKAT---------------------------------SDVITSTILMDSYFKNGDKFQALALWND 286 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 286 (542)
+.|.++++-..+.+..... -+..+...-.+.....|++++|.+.+++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 6666666555444331100 1222222222333446889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 009143 287 MFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ 366 (542)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 366 (542)
.+..+-. -+..+..+.-.+-..|+.++|++.|-++..- +..+......+.+.|-...+..+|++++...... ++.|+
T Consensus 516 al~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 9865421 1222222333567789999999999887543 3447788888999999999999999999877654 67788
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 009143 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (542)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 446 (542)
.+..-|.+.|-+.|+-.+|.+.+-+--.- .+.+..+..-|..-|....-+++++..|++..- +.|+..-|-.++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 99999999999999999999887665443 345888888899999999999999999998765 689999999999987
Q ss_pred hcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009143 447 TRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGN 491 (542)
Q Consensus 447 ~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 491 (542)
+-+.|++++|.++++...+. ++-|..+..-|++.+...|.
T Consensus 670 ----~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 670 ----FRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ----HHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 56789999999999998875 45678888888888877664
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.7e-11 Score=116.92 Aligned_cols=394 Identities=14% Similarity=0.037 Sum_probs=307.2
Q ss_pred CCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH
Q 009143 111 RCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP--DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC 188 (542)
Q Consensus 111 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 188 (542)
..|+.-|...|..=...+-+.|.+-.+..+....+..|+.- -..+|..-.+.|.+.+-++-|..+|...++..| -+.
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~ 550 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKK 550 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chh
Confidence 45778888888888888888899988888888888877653 246788888999999999999999999888665 366
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (542)
..|......--..|..++...+|++.... ++-....|......+-..|++..|..++..+.+..+ .+...|..-+
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p----nseeiwlaav 625 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP----NSEEIWLAAV 625 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC----CcHHHHHHHH
Confidence 77887777777779999999999999876 344556677777888889999999999999999887 7888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKL 347 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 347 (542)
........++.|..+|.+.... .|+...|..-+..--..++.++|++++++..+. -|+ ...|..+...+-+.++.
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 9999999999999999998875 578888888888878889999999999998886 455 45677777888889999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009143 348 DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (542)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (542)
+.|...|..-.+. ++-....|..+...--+.|.+-+|..++++..-+++. +...|-..|..-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888765553 4445566777777777888999999999999988876 8899999999999999999998887776
Q ss_pred HhCCCCCCHHHHHHHHHH----------------hh---------cccccccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009143 428 LSFGVSSNVFTFNALILA----------------ET---------RGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 482 (542)
Q Consensus 428 ~~~~~~p~~~~~~~ll~~----------------~~---------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 482 (542)
++. ++-+...|..-|.. |- ...+....+++.|.+.|.+.++.+ +.+..+|..+
T Consensus 780 LQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~f 857 (913)
T KOG0495|consen 780 LQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWF 857 (913)
T ss_pred HHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHH
Confidence 653 11111111111110 00 011455678999999999999863 2244789889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHH
Q 009143 483 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKK 519 (542)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 519 (542)
...+.++|.-++-.+++.+.....+. -...|.++-.
T Consensus 858 ykfel~hG~eed~kev~~~c~~~EP~-hG~~W~avSK 893 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETAEPT-HGELWQAVSK 893 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCC-CCcHHHHHhh
Confidence 99999999999999999888775322 2344544433
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=3.4e-12 Score=126.12 Aligned_cols=327 Identities=14% Similarity=0.101 Sum_probs=224.2
Q ss_pred HhhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 009143 95 KENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADH 174 (542)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 174 (542)
.++.+.+..+...+.. ..+.+...|.+|...|-+.|+.+++...+-...... +-|...|..+.....+.|.+++|.-
T Consensus 152 rg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 4566777776655431 234567789999999999999999887765555442 3356788888888888999999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009143 175 VIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR----VTHNILVHALCKKGLLGDAVKFLGEVL 250 (542)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 250 (542)
.|.++.+..| ++...+---+..|-+.|+...|.+-|.++.....+.|. .+.-..++.+...++.+.|.+.+....
T Consensus 229 cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999988776 35555555677788889999999999998876322222 222334666777888888999998888
Q ss_pred hCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHH
Q 009143 251 ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAY--------------------------NVLIN 304 (542)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------------------------~~li~ 304 (542)
..+... .+...++.++..+.+...++.|......+......+|..-| -.++-
T Consensus 308 s~~~~~--~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 308 SKEKDE--ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred hhcccc--ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 854433 66778888999999999999998888887762222222111 11222
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 009143 305 GFCLNGDISSAFAYFCQMLKRGF--LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDI 382 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 382 (542)
++...+..+....+..-..+... .-++..|..+..+|...|++.+|+.+|..+......-+..+|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 33333444444444444444442 2345567777778888888888888888777765445566777777777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 383 VKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
++|.+.+..++...+. +...--.|...+.+.|+.++|.+.+..+.
T Consensus 466 e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888888887776543 45555566667777888888887777755
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=6.1e-13 Score=129.34 Aligned_cols=286 Identities=15% Similarity=0.094 Sum_probs=202.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHH
Q 009143 131 GGKIGTALWLRRKMIQKGTVPDVLT-HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (542)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (542)
.|+++.|.+.+....+.. +++.. +........+.|+++.|.+.+.++.+..+.+.....-.....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777665542 12232 333344447788888888888888775443322222233667778888888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcH------HHHHHHHHHHHhcCCHHHHHHH
Q 009143 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV------ITSTILMDSYFKNGDKFQALAL 283 (542)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 283 (542)
.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+..... +.. .+|..++.......+.+...++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~--~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD--EEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888887764 3356777778888888888888888888888776521 221 2455555555566667777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009143 284 WNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363 (542)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (542)
|+.+.+.- +.++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 77775442 557778888888888888888888888888774 4554222 2333445588888888888887763 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
-|...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666778888888888899999888888875 47778888888888888999998888887754
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=9.8e-16 Score=142.33 Aligned_cols=262 Identities=19% Similarity=0.131 Sum_probs=84.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHc
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKG-TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (542)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666677777777777775544432 1234444555556666677777777777777665543 45556666665 567
Q ss_pred CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 009143 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (542)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 281 (542)
+++++|.++++..-+. .++...+..++..+.+.++++++.++++.+..... .+.+...|..+...+.+.|+.++|+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--APDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777665443 24555566666667777777777777777665332 1255666666667777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (542)
+.+++..+.. |.|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|..+++...+..
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 7777766653 3345666666666666677666666666665542 3344555666666666666666666666666542
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 362 VAPDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (542)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (542)
+.|+.+...+.+++...|+.++|.++.+++.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 3356666666666666666666666665544
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.2e-12 Score=114.29 Aligned_cols=292 Identities=17% Similarity=0.170 Sum_probs=215.9
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (542)
-+++.++|.++|-+|.+.. +.+..+-.+|.+.|-+.|..|.|+++++.+.++.......-..+...|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3577888888888887742 224455667888888889999999998888876543322334566778888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 280 ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQGKLDEASHFYG 355 (542)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~ 355 (542)
|+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999988765 456677888899999999999999999988877544432 345566666667788999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 356 VLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (542)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (542)
+..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+.++.+....++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 888864 2345555666778888999999999999999987666667888999999999999999999999888543343
Q ss_pred H--HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhHc
Q 009143 436 V--FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA---RGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 436 ~--~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 505 (542)
. ..+..+. .....+.|...+.+-+.. +|+...+.-+++.-.. .|...+-..+++.|...
T Consensus 284 ~~l~l~~lie---------~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIE---------LQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHH---------HhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 2222222 224456666666555554 7899888888886654 45567777777777653
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.9e-12 Score=126.57 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=99.6
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhHH
Q 009143 165 KIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR--VTHNILVHALCKKGLLGDA 242 (542)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a 242 (542)
..|+++.|.+.+.+..+..+.| ...+-....++.+.|+++.|.+.+.+..+.. |+. .........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3566777766666665543321 2333344455666677777777776665432 332 2333345666667777777
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH---HHhCCCHHHHHHH
Q 009143 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN-VLING---FCLNGDISSAFAY 318 (542)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~---~~~~~~~~~A~~~ 318 (542)
.+.++.+.+..| .+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..+ ....+..+++.+.
T Consensus 173 l~~l~~l~~~~P----~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 173 RHGVDKLLEMAP----RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHhCC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 777777776665 55566667777777777777777777777766532 222221 11111 1112222222233
Q ss_pred HHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 319 FCQMLKRGF---LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 319 ~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
+..+.+... +.+...+..+...+...|+.++|.+++++..+.
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 333333211 124455555555566666666666666555553
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.9e-15 Score=139.12 Aligned_cols=262 Identities=19% Similarity=0.197 Sum_probs=102.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 009143 158 YLVNELCKIGDLEKADHVIREMSEMR-PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (542)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 236 (542)
.+...+.+.|++++|.+++++..... +..+...|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55777788888888888886544433 3345566666666777788888888888888776432 45566666666 688
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN-IQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
+++++|.+++.+..+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 91 ~~~~~A~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-----GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccc-----cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888887765533 445566777788888888888888888876532 345677788888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
++.+++..+.. +.|......++..+...|+.+++..++....+.. +.|+..+..+..+|...|+.++|...+++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 88888888873 2246677778888888888888888887776653 445666777888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 396 SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 396 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.+. |+.....+.+++.+.|+.++|.++.++..+
T Consensus 244 ~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT--HHHHHHHHHHHT-----------------
T ss_pred ccc-cccccccccccccccccccccccccccccc
Confidence 544 788888888888888888888888776543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.7e-11 Score=110.89 Aligned_cols=395 Identities=13% Similarity=0.075 Sum_probs=252.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
+-+..+-|.++|++++|++.|.+.++. .|+ +.-|.....+|...|+++++.+--...++.+|. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 445667788999999999999999985 677 778889999999999999999988888885542 3445666667777
Q ss_pred HcCChhhHHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCCCcHHHHHHHHHHHHh----
Q 009143 200 RVNELDKALHLFSTMAN-NGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLA-DDDGKATSDVITSTILMDSYFK---- 273 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~---- 273 (542)
..|++++|+.=..-.-- .|+. |..+-..+=+.+-+ .|.+..++-.+ .++ +.-|......+....+..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~-p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRP-PVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCC-CCCCcHHHHHHHHhhccccccc
Confidence 78888877643322211 1121 22111111111111 12222222222 121 222333222222222211
Q ss_pred ---------------------cC---CHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHhCCCHHHHHH
Q 009143 274 ---------------------NG---DKFQALALWNDMFQK---NIQTD---------IVAYNVLINGFCLNGDISSAFA 317 (542)
Q Consensus 274 ---------------------~g---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~~~~~~A~~ 317 (542)
.+ .+..|...+.+-... ....+ ..+.......+.-.|+.-.|.+
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 01 122222222221110 00111 1222222223445678888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009143 318 YFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV 397 (542)
Q Consensus 318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 397 (542)
-|+..+.....+ ...|..+...|....+.++..+.|+.....+ +-++.+|..-.+.+.-.+++++|..-|++.+..++
T Consensus 348 d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 888888874332 2337777788889999999999999888865 34677888888888888999999999999988776
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCC-
Q 009143 398 VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF-GVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPD- 475 (542)
Q Consensus 398 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~- 475 (542)
. +...|-.+..+.-+.+++++++..|++.++. .-.|...+|..-+ +...++++.|.+.|+..++. .|+
T Consensus 426 e-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAei-------LtDqqqFd~A~k~YD~ai~L--E~~~ 495 (606)
T KOG0547|consen 426 E-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEI-------LTDQQQFDKAVKQYDKAIEL--EPRE 495 (606)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH-------HhhHHhHHHHHHHHHHHHhh--cccc
Confidence 5 6777877877888888999999999998873 2234444444433 56789999999999988874 332
Q ss_pred ------HHHH--HHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 476 ------IITY--TELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 476 ------~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
+..+ -.++-.- =.+++..|..++.+..+...+ ....|..|...-..+|+.++|+++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 1111111 248899999999999887544 556788899999999999999999998753
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.4e-11 Score=107.89 Aligned_cols=162 Identities=13% Similarity=0.053 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009143 332 ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY 411 (542)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 411 (542)
.|...+.+-|.-.++.++|...|+...+.+. .....|+.+.+-|....+...|.+-++++++-++. |-..|-.|.++|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHH
Confidence 3444444555555555555555555555331 12334444555555555555555555555554433 555555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009143 412 GRCGDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG 490 (542)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 490 (542)
.-.+...=|+-.|++..+ ++| |...|.++-.+ |.+.+++++|++.|.+....|- .+...|..|.+.|-+.+
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~C-----Y~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPNDSRLWVALGEC-----YEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELK 480 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHH-----HHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHH
Confidence 555555555555555544 233 23344444333 4455555555555555555432 24455555555555555
Q ss_pred CHHHHHHHHHHHh
Q 009143 491 NMKEAEEVFAKIQ 503 (542)
Q Consensus 491 ~~~~A~~~~~~m~ 503 (542)
+.++|...+++..
T Consensus 481 d~~eAa~~yek~v 493 (559)
T KOG1155|consen 481 DLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=9.7e-13 Score=125.96 Aligned_cols=285 Identities=13% Similarity=0.070 Sum_probs=170.5
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC--CCHHhHHHHHHHHHHcCChhhHHHH
Q 009143 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS--PNCATYNAFITGYCRVNELDKALHL 210 (542)
Q Consensus 133 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 210 (542)
+..+|+..|..+.+. ..-+.+....+..+|...+++++|.++|+.+.+..|- .+..+|.+.+.-+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345666666664433 3334455566677777777777777777777654331 2455565555433221 11122
Q ss_pred H-HHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 211 F-STMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 211 ~-~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
+ +.+.+. -+-.+.+|..+.+.|.-+++.+.|++.|++.+..++ ....+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp----~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP----RFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC----ccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 1 222222 123456777777777777777777777777777665 5667777777777777777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 009143 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISY 369 (542)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 369 (542)
.. +.+-..|.-|.-.|.+.++++.|+-.|+++.+-+ +-+.+....+...+.+.|+.|+|++++++...... .|+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH
Confidence 32 2223334445556777777777777777766653 22445555566666677777777777777666542 233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009143 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG 431 (542)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (542)
-..+..+...+++++|+..++++++.-+. +...|-.+...|.+.|+.+.|+.-|.-+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 34445555567777777777777665433 55566666677777777777777666666543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.1e-12 Score=114.08 Aligned_cols=256 Identities=15% Similarity=0.135 Sum_probs=135.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC--CCHHhHHHHHHHHHHcCChh
Q 009143 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS--PNCATYNAFITGYCRVNELD 205 (542)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 205 (542)
+....+.+++++=.+.+.+.|++.+...-+....+.-...++|.|+.+|+++.+..|- .|..+|..++-.-.. +-
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--~s- 313 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--KS- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh--hH-
Confidence 3333455555555555555555444444444444444555666666666666554321 133444444332111 11
Q ss_pred hHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (542)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 285 (542)
.+..+.+-.-.=-+-.+.|...+.+-|.-.++.++|...|+..++.++ ....+|+.+..-|....+...|..-++
T Consensus 314 -kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp----~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 -KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP----KYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred -HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc----chhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111111110000112334555555555566666666666666666555 555566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009143 286 DMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD 365 (542)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 365 (542)
..++.. |.|-..|..|.++|.-.+...=|+-.|++..... +.|...|.+|..+|.+.++.++|++-|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 666554 5556666666666666666666666666665542 3355566666666666666666666666665544 224
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009143 366 QISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (542)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (542)
...+..|.+.|-+.++.++|...+.+-++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666666666666666655555443
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=3.5e-11 Score=108.69 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=130.9
Q ss_pred cCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 009143 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 280 (542)
.|+|.+|+++..+-.+.+-. ....|..-+.+.-+.|+.+.+-+++.++-+..+ . ++..+.-+........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~--~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-D--DTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-C--chHHHHHHHHHHHHhCCCchhH
Confidence 58999999998888777643 345566677777888899999999988887633 3 6777888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 009143 281 LALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV-------ITYNTLLNCLCKQGKLDEASHF 353 (542)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 353 (542)
..-.+++.+.+ +.++........+|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 88888888876 667788888888888888888888888888888755443 2344444444333444443344
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009143 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV 398 (542)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (542)
|+..... .+.++..-..++.-+.+.|+.++|.++.++.++++..
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D 295 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD 295 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 4443322 2333444445555555555555555555555555443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=4.1e-11 Score=108.21 Aligned_cols=286 Identities=15% Similarity=0.081 Sum_probs=185.5
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHH
Q 009143 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKF 245 (542)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 245 (542)
.|++..|+++..+-.+.+..| ...|..-+.+.-+.|+.+.+-.++.+..+.--.++...+.+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477888877777776666543 4455556666677778888877777776653344556666677777777888888877
Q ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHH
Q 009143 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI-------VAYNVLINGFCLNGDISSAFAY 318 (542)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~ 318 (542)
+.++.+..+ .+..+.....++|.+.|++.+...++..+.+.+.-.+. .+|..+++-....+..+.-...
T Consensus 176 v~~ll~~~p----r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 176 VDQLLEMTP----RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHhCc----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 777777766 66777777778888888888888888888777655443 3455566655555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009143 319 FCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV 398 (542)
Q Consensus 319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (542)
+++..++ .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+. . ..-...+-++...-++..++-.+..+.
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 5555443 3445666667777777788888888877777776655541 1 112234456666656666555554333
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh
Q 009143 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
++..+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+-.+ +.+.|+.++|.++.++...
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~-----~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADA-----LDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHH-----HHHcCChHHHHHHHHHHHH
Confidence 556677777777777777777777776555 34555666555555 4555666666666655543
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=8.4e-10 Score=101.68 Aligned_cols=410 Identities=10% Similarity=0.056 Sum_probs=308.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
.+...|-.....=..++++..|..+|++.+... ..+...|...+..=.++..+..|..++++....-|..| ..|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHH
Confidence 355567777777778899999999999999865 34777888888988999999999999999987655433 3455556
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (542)
..=-..|++..|.++|++-.+ ..|+...|.+.++.-.+-+.++.|..+++..+-.. |++..|.....--.+.|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-----P~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-----PKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-----ccHHHHHHHHHHHHhcC
Confidence 666678999999999999887 47999999999999999999999999999988644 88999999999999999
Q ss_pred CHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 009143 276 DKFQALALWNDMFQK-N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEAS 351 (542)
Q Consensus 276 ~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 351 (542)
+...|..+|+...+. | -..+...+.+....-.++..++.|.-+|+-.++. ++.+ ...|.....-=-+-|+.....
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 999999999988764 1 0122334555555555677889999999988876 2222 233433333333345443333
Q ss_pred HH--------HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH--------HHHhc
Q 009143 352 HF--------YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP-HIWNVIID--------GYGRC 414 (542)
Q Consensus 352 ~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~--------~~~~~ 414 (542)
.. ++.+.+.+ +-|-.+|-..+..-...|+.+...+++++.+..-++... ..|...|- .-...
T Consensus 301 d~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 34444443 456777878888888889999999999999875332221 11222221 12356
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009143 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 494 (542)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 494 (542)
.+.+.+.++|+..++. ++-...||..+--.++. ...++.++..|.+++...+ |..|...+|...|..-.+.++++.
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~-feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQ-FEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHH-HHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence 8999999999999883 33445666655444332 2456789999999998877 458999999999999999999999
Q ss_pred HHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 495 AEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 495 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
...++++..+.++. +..+|......-...|+.+.|..+|+-+++..
T Consensus 456 cRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999999997653 77889888888889999999999999887653
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.9e-12 Score=122.78 Aligned_cols=286 Identities=16% Similarity=0.074 Sum_probs=150.5
Q ss_pred hhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH-
Q 009143 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA- 282 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~- 282 (542)
..+|...|+.+... +.-+......+.++|...+++++|+++|+.+.+..+ -.-.+...|.+.+--+-+. -++.
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p-~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP-YRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhHHHHHHHHHHhh----HHHHH
Confidence 45666666664433 222334455566666666666666666666666554 2223444555544333221 1111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 283 LWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (542)
+-+.+.+.. +..+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 112222222 445566666666666666666666666666654 23 45556555555556666666666666554421
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-
Q 009143 362 VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN- 440 (542)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~- 440 (542)
+-+...|.-+.-.|.+.++++.|+-.|+++.+.++. +.+....++..+.+.|+.++|+.+++++.....+-...-|.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 011223333444566666666666666666665544 55555556666666666666666666665532221111111
Q ss_pred HHHHHhhcccccccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCC
Q 009143 441 ALILAETRGASCNLGHIHLALQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI 509 (542)
Q Consensus 441 ~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (542)
+.+ +...++.++|+..++++.+. .|+ ...|..++..|.+.|+.+.|..-|.-|.+...++
T Consensus 564 ~~i-------l~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASI-------LFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHH-------HHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 111 23346666666666666653 333 3455566666666666666666666665544333
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=1.1e-10 Score=118.77 Aligned_cols=147 Identities=13% Similarity=0.034 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009143 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAY 318 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 318 (542)
+++|...++++++.++ .+..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|+..
T Consensus 320 ~~~A~~~~~~Al~ldP----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATELDH----NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444444444444443 444444444444444455555555554444443 33344444444444444555555555
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 319 FCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSM 392 (542)
Q Consensus 319 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 392 (542)
++++.+.. |+ ...+..++..+...|++++|...+++..+...+-+...+..+...+...|+.++|...+.++
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 54444432 21 11112222223334444444444444433221112223333444444444444444444443
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.7e-08 Score=91.62 Aligned_cols=307 Identities=13% Similarity=0.041 Sum_probs=216.3
Q ss_pred CCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009143 220 RPNRVTHNILVHALC--KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV 297 (542)
Q Consensus 220 ~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 297 (542)
+|+..+....+.+++ -.++...+...+-.+.... ..+.++.....+.+.+...|+.++|...|+.....+ +-+..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~--~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~ 267 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNT--TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVE 267 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhc--cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhh
Confidence 333333333444443 3344444444443333322 233888999999999999999999999999988653 22233
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (542)
......-.+.+.|+.+....+...+.... .-+...|..-........+++.|+.+-++.++.+ +.+...|-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 33333445567888888888887776542 2233344444455566778899999888887754 224455555556778
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhhcccccccCC
Q 009143 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI-LAETRGASCNLGH 456 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~g~ 456 (542)
..|++++|.-.|+......+. +...|..|+.+|...|.+.+|.-.-+..... +..+..+...+- ..| +.....
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~----~~dp~~ 419 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL----FPDPRM 419 (564)
T ss_pred hccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee----ccCchh
Confidence 899999999999998876544 7889999999999999999998877665542 233444444431 222 223345
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 009143 457 IHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQ 535 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (542)
-++|.+++++.... .|+. ...+.+...+...|+.+.++.++++.... .||....+.|.+.+...+.+.+|++.|.
T Consensus 420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 68899999888764 5664 45677788889999999999999998774 5899999999999999999999999999
Q ss_pred HHhhcC
Q 009143 536 KWLLRN 541 (542)
Q Consensus 536 ~~l~~~ 541 (542)
.+|..|
T Consensus 496 ~ALr~d 501 (564)
T KOG1174|consen 496 KALRQD 501 (564)
T ss_pred HHHhcC
Confidence 998765
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=9e-11 Score=119.30 Aligned_cols=266 Identities=13% Similarity=0.025 Sum_probs=190.1
Q ss_pred ChhhHHHHHHHHHH-----cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH---------cCChhhHHHHHHHHHHC
Q 009143 152 DVLTHNYLVNELCK-----IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR---------VNELDKALHLFSTMANN 217 (542)
Q Consensus 152 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 217 (542)
+...|...+.+... .+.+++|.+.|++..+..|. +...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555555322 24567999999999987653 56667666655542 24578999999999886
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009143 218 GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV 297 (542)
Q Consensus 218 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 297 (542)
. +-+..++..+...+...|++++|...++++++.++ .+...+..+...+...|++++|...+++..+.+ +.+..
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~ 407 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP----ISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAA 407 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChh
Confidence 4 33677888888899999999999999999999887 778889999999999999999999999999885 33344
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (542)
.+..++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...+.++.... +.+....+.+...|+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 4444555677789999999999998876422245557778888899999999999998876642 223344555556667
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 378 IHGDIVKAREFLLSMLEKSV-VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
..| ++|...++.+.+..- .+....+ +-..|.-.|+.+.+... +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 767 477777777665321 1122222 33444556666666555 776654
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.1e-10 Score=105.46 Aligned_cols=199 Identities=20% Similarity=0.168 Sum_probs=119.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
...+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|.+.+++..+..+ .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4456666677777777777777777776642 22455666666777777777777777777766554 244556666666
Q ss_pred HHHcCChhhHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 198 YCRVNELDKALHLFSTMANNGI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
+...|++++|.+.+++...... ......+..+...+...|++++|.+.+.+.+...+ .+...+..+...+...|+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP----QRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CChHHHHHHHHHHHHcCC
Confidence 7777777777777777665321 11233444555566666666666666666665544 344455556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
+++|...+++..+.. +.+...+..++..+...|+.++|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666555542 3344445555555555566666555555443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.4e-10 Score=104.77 Aligned_cols=200 Identities=19% Similarity=0.140 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHH
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 232 (542)
...+..+...+...|++++|.+.+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455566666666666666666666655443 244555556666666666666666666665542 2234455555556
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 312 (542)
+...|++++|.+.+.+++...... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYP--QPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 666666666666666665432111 233444555555555666666666665555443 23344555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 313 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555544 12334444444455555555555555544443
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-09 Score=102.81 Aligned_cols=288 Identities=15% Similarity=0.086 Sum_probs=211.1
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009143 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (542)
Q Consensus 219 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 298 (542)
..-+.........-+...+++.+..++.+.+.+.++ +....+..-|.++...|+..+-..+=.++++.- |..+.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp----fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP----FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC----CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 444566666777777888889999999998888777 666777777778888888888777777777664 667788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 009143 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378 (542)
Q Consensus 299 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 378 (542)
|-++.-.|...|+.++|.+.|.+....+ +.=...|......|.-.|..|+|+..+....+. .+-....+--+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHH
Confidence 8888888888899999999988876543 112456777888888888888888888776664 11122223334445777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCC----CHHHHHHHHHHhhccccc
Q 009143 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS--FGVSS----NVFTFNALILAETRGASC 452 (542)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p----~~~~~~~ll~~~~~~~~~ 452 (542)
.+..+.|.+.|.+.....+. |+...+-+.-..-..+.+.+|...|+..+. ..+.+ ...+++.+-++ +.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~-----~R 466 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA-----YR 466 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH-----HH
Confidence 88888999999888877654 788888888877788888999888888763 11112 22334444444 67
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHH
Q 009143 453 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR 522 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 522 (542)
+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.... .|+..+...++..+.
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 7888999999999888753 447788888888888899999999988887664 577766666665443
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=2.7e-08 Score=95.40 Aligned_cols=395 Identities=11% Similarity=0.134 Sum_probs=216.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC------CCCCHHhHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR------PSPNCATYNA 193 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~ 193 (542)
.|.-.+......|-++-++.++++-++. ++..-.--|..+++.+++++|.+.+..++... .+.+...|..
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 4555555555555555555555555442 22224444555555555555555554443211 1123334444
Q ss_pred HHHHHHHcCChh---hHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 009143 194 FITGYCRVNELD---KALHLFSTMANNGIRPNR--VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (542)
Q Consensus 194 li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (542)
+-....+..+.- ....+++.+.. .-+|. ..|.+|.+-|.+.|.++.|..++++.+..- ..+.-|+.+.
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-----~tvrDFt~if 288 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-----MTVRDFTQIF 288 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-----eehhhHHHHH
Confidence 444444332221 12222222222 12332 345666777777777777777776665532 2333344444
Q ss_pred HHHHhcCC----------------------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 269 DSYFKNGD----------------------KFQALALWNDMFQKN-----------IQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 269 ~~~~~~g~----------------------~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
+.|..... ++-....|+.+.... -+.++..|..-.. +..|+..+-
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~ 366 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH
Confidence 44433211 111222222222211 0122233322222 224556666
Q ss_pred HHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHH
Q 009143 316 FAYFCQMLKRGFLPD------VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD---QISYKTIIQGLCIHGDIVKAR 386 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 386 (542)
...|.++.+. +.|- ...|..+.+.|-..|+++.|..+|++..+...+.- ..+|......-.+..+++.|+
T Consensus 367 i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 367 INTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6677766654 2222 23477788888999999999999998877543221 335555555666778889999
Q ss_pred HHHHHHHhCCCCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH-HHHHHHHHHhh
Q 009143 387 EFLLSMLEKSVVP-----------------EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS-SNV-FTFNALILAET 447 (542)
Q Consensus 387 ~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~~ll~~~~ 447 (542)
+++++.....-.| +...|...++.-...|-++....+|+++.+..+. |-. ..|..++
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL---- 521 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL---- 521 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----
Confidence 9888775421111 2334666677777788899999999999885543 433 2344443
Q ss_pred cccccccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHhHcCCCCChhHHHHHH--HHH
Q 009143 448 RGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCA---RGNMKEAEEVFAKIQTLGLAIDHIPFRILK--KRY 521 (542)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~--~~~ 521 (542)
-...-++++.+.+++-+..-.-|+. ..|+..+..+.+ .-+++.|..+|++..+ |++|...-+.-|+ ..-
T Consensus 522 ----Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 522 ----EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred ----HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 3456678888888877764334555 566666655543 4468889999999988 5655543322222 222
Q ss_pred HhcCChhHHHHHHHHH
Q 009143 522 RRMKESDKARDIHQKW 537 (542)
Q Consensus 522 ~~~g~~~~A~~~~~~~ 537 (542)
-+-|....|+++|+++
T Consensus 597 Ee~GLar~amsiyera 612 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERA 612 (835)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3458888888888876
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.2e-11 Score=105.65 Aligned_cols=234 Identities=15% Similarity=0.114 Sum_probs=190.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 009143 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (542)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (542)
+.+..+|.+.|.+.+|...++.-.+. .|-+.||..|.++|.+..+...|+.++.+-++.-+ .++....-..+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP----~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP----FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC----chhhhhhhhHHHH
Confidence 56788888999999999888887764 56778888888999999999999999988888665 7777777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (542)
-..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++.+.|+. ++..|..+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88899999999999888765 567777777778888889999999999999988854 7788888888888888999888
Q ss_pred HHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 352 HFYGVLSKTGVAPD--QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 352 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.-|.+....--.|+ ..+|..+-......||+.-|.+.|+-.+..+.. +...+|.|.-.-.+.|+.++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88887766533333 346666777777889999999999998887765 778899998888999999999999988776
Q ss_pred CCCCCCH
Q 009143 430 FGVSSNV 436 (542)
Q Consensus 430 ~~~~p~~ 436 (542)
. .|+.
T Consensus 458 ~--~P~m 462 (478)
T KOG1129|consen 458 V--MPDM 462 (478)
T ss_pred h--Cccc
Confidence 3 4543
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.3e-10 Score=104.08 Aligned_cols=284 Identities=12% Similarity=0.033 Sum_probs=195.5
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHH
Q 009143 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 230 (542)
-+......-.+.+...+++.+..++++.+.+..| +....+-.-|.++...|+..+-..+=.+|.+. .+-.+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 3444445555666677888888888888877665 46666666677777778777777777777665 344567787777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
--|.-.|+..+|.+.|.+....++ .-...|..+...|.-.|..|+|...+....+.= +-...-+--+.--|.+.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~----~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDP----TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCc----cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 777777888888888888777666 556678888888888888888887777665531 111111222344566777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHHHhcCCHHH
Q 009143 311 DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT----G--VAPDQISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~ 384 (542)
+.+.|.+.|.+.... .+.|+..++-+.-.....+.+.+|..+|...... + ...-..+++.|.++|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 888888888777655 2446666777766667777788888877765521 0 01123456777777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009143 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA 445 (542)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 445 (542)
|+..+++.+...++ +..++.++.-.|...|+++.|.+.|.+.+. +.|+..+...++..
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 88888888776655 777888888888888888888888877765 56777666666644
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=5.1e-08 Score=93.76 Aligned_cols=371 Identities=16% Similarity=0.150 Sum_probs=165.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
+.+.|..+.-.+....++++|+..|+.....+ +.|...|.-+.-.-++.|+++.....-....+..+ .....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence 34455555555555555666666666555543 22444555444444555555555555555544433 23445555555
Q ss_pred HHHHcCChhhHHHHHHHHHHCC-CCCChHHHHHHHHHHH------hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Q 009143 197 GYCRVNELDKALHLFSTMANNG-IRPNRVTHNILVHALC------KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (542)
++.-.|+...|..+++...+.. -.|+...|......+. +.|..+.|.+.+......-. .....-..-..
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~----Dkla~~e~ka~ 227 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV----DKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH----HHHHHhhhHHH
Confidence 5555566666666655555442 2344444443333222 23444444444443322111 22233334445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCC
Q 009143 270 SYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN-GFCLNGDISSAF-AYFCQMLKRGFLPDVITYNTL-LNCLCKQGK 346 (542)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~-~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~ 346 (542)
.+.+.+++++|..++..+...+ ||...|..... ++.+-.+.-++. .+|....+. .|-...-..+ ++......-
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchh
Confidence 5555566666666666665552 34333333332 222222222222 444443332 1111100000 111111112
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHH--HHHHHHHH
Q 009143 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSML----EKS----------VVPEPH--IWNVIIDG 410 (542)
Q Consensus 347 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~--~~~~li~~ 410 (542)
.+....++..+.+.|+++ ++..+...|-.....+-..++.-.+. ..+ -+|... ++-.++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 233334444455555433 33333333322111111111111111 110 023332 23344556
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009143 411 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG 490 (542)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 490 (542)
+-+.|+++.|...++...+. .|+.+-.-.+=.- .+.+.|++++|..++++..+.. .||...-..-+.-..+++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR----I~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR----IFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH----HHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 66667777777776666653 5554432211111 2455667777777776666643 334433334444455666
Q ss_pred CHHHHHHHHHHHhHcCC
Q 009143 491 NMKEAEEVFAKIQTLGL 507 (542)
Q Consensus 491 ~~~~A~~~~~~m~~~g~ 507 (542)
+.++|.++.....+.|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 67777776666666543
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=6.8e-09 Score=96.27 Aligned_cols=371 Identities=13% Similarity=0.075 Sum_probs=238.9
Q ss_pred CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHh-hCCCCCCHH
Q 009143 113 TLETD-YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMS-EMRPSPNCA 189 (542)
Q Consensus 113 ~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 189 (542)
.+.|| +.-|......|...|++++.++.-...++. .|+ +..+..-..++-+.|++++|+.=..-.- -.|. .|..
T Consensus 143 ~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F-~n~s 219 (606)
T KOG0547|consen 143 ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGF-QNAS 219 (606)
T ss_pred hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhc-ccch
Confidence 45577 777888888899999999999888888774 454 3456666677777888887743111110 0011 1111
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHH-HHHCC--CCCChHHHHHHHHHHHh-------------------------cC---C
Q 009143 190 TYNAFITGYCRVNELDKALHLFST-MANNG--IRPNRVTHNILVHALCK-------------------------KG---L 238 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~-m~~~g--~~p~~~~~~~l~~~~~~-------------------------~g---~ 238 (542)
+ ..++.-..+ ..|..-.++ |.+.+ +-|......+....+.. .+ .
T Consensus 220 ~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~ 294 (606)
T KOG0547|consen 220 I-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEG 294 (606)
T ss_pred h-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchh
Confidence 1 011111000 011111111 11111 22332222222222110 01 2
Q ss_pred hhHHHHHHHHHHhCCCCCCCCc---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 009143 239 LGDAVKFLGEVLADDDGKATSD---------VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (542)
+..|...+.+-..........+ ..+......-+.-.|+.-.|..-|+..+.... .+...|-.+...|...
T Consensus 295 Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 295 YLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADE 373 (606)
T ss_pred HHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhh
Confidence 2223332222221111010011 22233333344567899999999999998763 3333388888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 009143 310 GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFL 389 (542)
Q Consensus 310 ~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 389 (542)
++.++.+..|.+..+.+ +-++.+|..-...+.-.+++++|..=|++.+... +-+...|..+.-+..+.+++++++..|
T Consensus 374 ~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~F 451 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTF 451 (606)
T ss_pred hccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 4467788888888888999999999999988853 224556666666677889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------H--HHHHHHHHHhhcccccccCChHHH
Q 009143 390 LSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN-------V--FTFNALILAETRGASCNLGHIHLA 460 (542)
Q Consensus 390 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~--~~~~~ll~~~~~~~~~~~g~~~~A 460 (542)
++.+++-+. -+..|+.....+..+++++.|.+.|+..++. .|+ . ..--.++. +--.+++..|
T Consensus 452 ee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~------~qwk~d~~~a 522 (606)
T KOG0547|consen 452 EEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV------LQWKEDINQA 522 (606)
T ss_pred HHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh------hchhhhHHHH
Confidence 999987544 7889999999999999999999999998873 232 1 11222222 1234999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 461 LQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 461 ~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
..++++..+. .|. ...|.+|...-.+.|+.++|+++|++....
T Consensus 523 ~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 523 ENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999986 343 368999999999999999999999987653
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=7.4e-11 Score=103.42 Aligned_cols=231 Identities=15% Similarity=0.125 Sum_probs=199.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHH-HHHHHHHHh
Q 009143 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTH-NILVHALCK 235 (542)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~ 235 (542)
+.+..+|.+.|.+.+|.+.|+..++.. |-+.||-.|-..|.+..++..|+.++.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 678999999999999999999988754 56678889999999999999999999988764 4555554 567888899
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
.++.++|.++++.+++..+ .++....++...|.-.++++-|++.++++++.| ..++..|+.+.-+|.-.+++|-+
T Consensus 303 m~~~~~a~~lYk~vlk~~~----~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP----INVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC----ccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhh
Confidence 9999999999999999887 888888889999999999999999999999999 56888999999999999999999
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 316 FAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (542)
+.-|.+.+..--.|+ ...|-.+.......|++..|.+-|+.....+ ..+...++.|.-.-.+.|++++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999887644444 4567778888888999999999999888764 3356788888888889999999999999987
Q ss_pred hCCC
Q 009143 394 EKSV 397 (542)
Q Consensus 394 ~~~~ 397 (542)
...+
T Consensus 457 s~~P 460 (478)
T KOG1129|consen 457 SVMP 460 (478)
T ss_pred hhCc
Confidence 7543
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=8.8e-10 Score=108.99 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=71.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHH
Q 009143 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (542)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (542)
|+.||.+||.++|.-||..|+.+.|- +|.-|.-+..+.+...++.++.+....++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 78899999999999999999999888 8988887777778888999999888888888773 47778999
Q ss_pred HHHHHHHHcCChhh
Q 009143 193 AFITGYCRVNELDK 206 (542)
Q Consensus 193 ~li~~~~~~g~~~~ 206 (542)
.|..+|.+.|+...
T Consensus 88 ~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHhccchHH
Confidence 99999999998765
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=1.8e-07 Score=89.92 Aligned_cols=379 Identities=10% Similarity=0.060 Sum_probs=228.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHHcCC---hhHHHHHHHHHhhCCCCCC
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG------TVPDVLTHNYLVNELCKIGD---LEKADHVIREMSEMRPSPN 187 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 187 (542)
++..-+-.|..++..+++++|.+.+...+... .+.+...|..+-+...+.-+ --....+++.+...-...-
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 33445677888999999999999998876531 23455677777777666533 2344555666655443333
Q ss_pred HHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhH----------------------HHHH
Q 009143 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD----------------------AVKF 245 (542)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~----------------------a~~~ 245 (542)
...|.+|.+.|.+.|.+++|.++|++.... ..+..-|..+.++|..-.+-.- ...-
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 568999999999999999999999998764 3466667778888775322111 1222
Q ss_pred HHHHHhCCCC--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhCCCH
Q 009143 246 LGEVLADDDG--------KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN-----IQTDIVAYNVLINGFCLNGDI 312 (542)
Q Consensus 246 ~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~ 312 (542)
|+.+....+. ..+.++..|..-+ -+..|+..+-...+.+..+.= +..-...|..+.+.|-..|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 2233322210 0001111222111 122456667777777776531 111234578888999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------C------ChhhHHHH
Q 009143 313 SSAFAYFCQMLKRGFLPD---VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-----------P------DQISYKTI 372 (542)
Q Consensus 313 ~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~------~~~~~~~l 372 (542)
+.|..+|++..+...+.- ..+|......=.+..+++.|+++.+......-. + +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887643221 234555555555677888888888766432111 1 12344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhcccc
Q 009143 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV-FTFNALILAETRGAS 451 (542)
Q Consensus 373 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~ 451 (542)
++.--..|-++....+++++++..+. ++...-.....+..+.-++++.++|++-+..-..|+. ..|+..+.-+... |
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r-y 561 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR-Y 561 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH-h
Confidence 55555567888888888888887664 4444434444455666778888888776664344555 3455544443221 2
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009143 452 CNLGHIHLALQLYDEMLRRGITPDIIT--YTELIKGHCARGNMKEAEEVFAKIQ 503 (542)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~ 503 (542)
....++.|..+|++.++ |.+|...- |......--+.|....|+.++++..
T Consensus 562 -gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 562 -GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred -cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22467888888888887 55554422 2222222224566666776666644
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=2.1e-08 Score=98.27 Aligned_cols=409 Identities=14% Similarity=0.086 Sum_probs=271.3
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH-HhHH
Q 009143 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC-ATYN 192 (542)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 192 (542)
+.-|+..|..+.-++.+.|+++.+.+.|++.... ..-....|..+...|...|.-..|..+++......+.|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3467889999999999999999999999998765 3346778999999999999999999999988765533443 3333
Q ss_pred HHHHHHHH-cCChhhHHHHHHHHHHC--CC--CCChHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 009143 193 AFITGYCR-VNELDKALHLFSTMANN--GI--RPNRVTHNILVHALCKK-----------GLLGDAVKFLGEVLADDDGK 256 (542)
Q Consensus 193 ~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 256 (542)
..-..|.+ .+.+++++++..+.... |. ......|..+.-+|... ....++.+.+++.++.++
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-- 475 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-- 475 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC--
Confidence 33333443 47888888888777662 11 11234455454444421 234568888999999887
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 009143 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYN 335 (542)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~ 335 (542)
.|..+...+.--|+..++.+.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+. .|+ .....
T Consensus 476 --~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~ 551 (799)
T KOG4162|consen 476 --TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMD 551 (799)
T ss_pred --CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhch
Confidence 4444444556677888999999999999999866789999999999999999999999999987765 111 11111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC-------CCChhhHHHHHHHHHhcCCHHHHHH
Q 009143 336 TLLNCLCKQGKLDEASHFYGVLSKT---------------------GV-------APDQISYKTIIQGLCIHGDIVKARE 387 (542)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~-------~~~~~~~~~li~~~~~~g~~~~A~~ 387 (542)
.-+..-..-++.+++.....++... |. .-...++..+..-... +...+..
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~s 629 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGS 629 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccc
Confidence 1111112244555554443333211 00 0011122222211110 0000000
Q ss_pred HHHHHHhCCC--CCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHH
Q 009143 388 FLLSMLEKSV--VPE------PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHL 459 (542)
Q Consensus 388 ~~~~~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~ 459 (542)
-.. +...-. .|+ ...|......+.+.++.++|...+.+..... .-....|...-.. +...|..++
T Consensus 630 e~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~-----~~~~~~~~E 702 (799)
T KOG4162|consen 630 ELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL-----LEVKGQLEE 702 (799)
T ss_pred ccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH-----HHHHHhhHH
Confidence 000 111111 122 2246667778889999999998888887632 1122222222111 456799999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 009143 460 ALQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEE--VFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQK 536 (542)
Q Consensus 460 A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (542)
|.+.|...... .|+ +....++..++.+.|+..-|.. ++..+.+.+. .++..|..+...+.+.|+.++|.+.|+-
T Consensus 703 A~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999998875 454 4678899999999999888888 9999999875 4899999999999999999999999999
Q ss_pred HhhcC
Q 009143 537 WLLRN 541 (542)
Q Consensus 537 ~l~~~ 541 (542)
+++.+
T Consensus 780 a~qLe 784 (799)
T KOG4162|consen 780 ALQLE 784 (799)
T ss_pred HHhhc
Confidence 87653
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=5.6e-10 Score=110.31 Aligned_cols=254 Identities=15% Similarity=0.115 Sum_probs=159.6
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 009143 139 WLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG 218 (542)
Q Consensus 139 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (542)
.++-.+...|+.|+..||..+|..||..|+.+.|- +|.-|.-.....+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 8888876666667888999999998888888776
Q ss_pred CCCChHHHHHHHHHHHhcCChhH---HHHHHHHHHh----CCCCCCCCcHHH-------------HHHHHHHHHhcCCHH
Q 009143 219 IRPNRVTHNILVHALCKKGLLGD---AVKFLGEVLA----DDDGKATSDVIT-------------STILMDSYFKNGDKF 278 (542)
Q Consensus 219 ~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~ 278 (542)
.|...||..|..+|...|++.. .++.+..+.. .|.+. +.... -.+.+....-.|-++
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs--~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGS--PERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCc--HHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 5888999999999999998765 2222222211 11101 11111 111222223333344
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNI-QTDIVAYNVLINGFCLN-GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (542)
Q Consensus 279 ~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (542)
.+++++..+..... .|..+ .++-+... ..+++-..+.+...+ .|++.+|..++.+-...|+.+.|..++.+
T Consensus 157 qllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 44444333322110 01111 12222211 122222222222222 46777777777777777777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009143 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD 416 (542)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 416 (542)
|.+.|++.+.+-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+..-+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777777666666544 66667777777777777777777777776666666554
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=6e-09 Score=102.51 Aligned_cols=292 Identities=16% Similarity=0.109 Sum_probs=174.5
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc-
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN- 274 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 274 (542)
..+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.++ .+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP----dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP----DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHhhhc
Confidence 3445667777777766654432 332334445566666677777777777777776665 5555555555555222
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009143 275 ----GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS-SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE 349 (542)
Q Consensus 275 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (542)
.+.+....+++++...- |.......+.-.+.....+. .+..++..+..+|+++ +|+.|-..|....+.+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 24556666666665542 33222222221222212222 3445555666666433 45555555554444444
Q ss_pred HHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009143 350 ASHFYGVLSKT----G----------VAPDQ--ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (542)
Q Consensus 350 A~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (542)
...++...... + -+|+. .++..+...|...|++++|++.+++.++..+. .+..|..-...+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 44555444322 1 12333 34566677788889999999999988887654 57788888888889
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHH------H--HHHHHH
Q 009143 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIIT------Y--TELIKG 485 (542)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~------~--~~li~~ 485 (542)
.|++.+|.+.++...... +...-.|+-..-| +.+.|++++|.+++....+.+..|-... | .-...+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy----~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD--LADRYINSKCAKY----LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred CCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHH----HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999888888743 3333333332222 5567999999998888877654333221 1 345678
Q ss_pred HHhcCCHHHHHHHHHHHhH
Q 009143 486 HCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~ 504 (542)
|.+.|++..|.+.|....+
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8899999998887776654
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=7.7e-08 Score=92.56 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=61.4
Q ss_pred ccccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhH
Q 009143 451 SCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDK 529 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 529 (542)
+-+.|+++.|..+++..+.+ .|+. ..|..-.+.+...|++++|..++++..+... +|..+-..-.+-..++++.++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHH
Confidence 66778888888888888765 5665 4566666777888888888888888877643 465555566667778888888
Q ss_pred HHHHHHHH
Q 009143 530 ARDIHQKW 537 (542)
Q Consensus 530 A~~~~~~~ 537 (542)
|.++..+.
T Consensus 458 A~~~~skF 465 (700)
T KOG1156|consen 458 AEEVLSKF 465 (700)
T ss_pred HHHHHHHh
Confidence 88776654
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=9.6e-09 Score=101.07 Aligned_cols=296 Identities=13% Similarity=0.098 Sum_probs=206.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 227 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
.-....+...|++++|++.+.+-...-. ............+.+.|+.++|..+|..+++.+ |.|..-|..+..+.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~----Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQIL----DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3344567889999999999988665443 667788889999999999999999999999986 44555555555555
Q ss_pred HhC-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 009143 307 CLN-----GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL-DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (542)
Q Consensus 307 ~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (542)
.-. .+.+...++|+++... -|.......+.-.+.....+ ..+...+..+.+.|+++ +++.+-..|....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 222 3577888899988776 34433333332222222223 34455667777788653 5666666666555
Q ss_pred CHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009143 381 DIVKAREFLLSMLEK----S----------VVPEP--HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 444 (542)
...-..+++...... + -.|.. .++..+...|...|++++|++..++.++. .|+.+-+..+-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 555555555554432 1 12333 35566788899999999999999999985 566543332222
Q ss_pred HhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChh------H--HHH
Q 009143 445 AETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI------P--FRI 516 (542)
Q Consensus 445 ~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~------~--~~~ 516 (542)
- .+-+.|++++|.+.++..+..... |...-+-.+..+.+.|+.++|.+++....+.+..|-.. . ...
T Consensus 236 r----ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 236 R----ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred H----HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 1 277889999999999999987533 66666777888899999999999999988765433321 2 245
Q ss_pred HHHHHHhcCChhHHHHHHHHHhh
Q 009143 517 LKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
...+|.+.|++..|.+.|....+
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 66789999999999999887754
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2.4e-08 Score=88.91 Aligned_cols=384 Identities=13% Similarity=0.067 Sum_probs=216.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (542)
-+...+.+.|++++|...+..+.+. ..|+...+..|...+.-.|.+.+|..+-... + .+.-.-..|+....+.+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~-k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKA----P-KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhC----C-CChHHHHHHHHHHHHhC
Confidence 3445666889999999999988875 4667778888888888889999996665543 2 24445556666666778
Q ss_pred ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHH-HHHHHHhcCCHHHHH
Q 009143 203 ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI-LMDSYFKNGDKFQAL 281 (542)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~ 281 (542)
+-++-..+-+.+.. ...--.+|.......-.+.+|++++..++...+ +-...|. +.-+|.+..-++-+.
T Consensus 136 dEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~-----ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 136 DEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP-----EYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred cHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh-----hhhhhHHHHHHHHHhcchhhhHH
Confidence 87777776666543 223344566666666778999999999988664 3333333 445677888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------------------------------
Q 009143 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD------------------------------- 330 (542)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~------------------------------- 330 (542)
++++-.++.- +.++...|..+....+.=+-..|.+-.+.+.+.+-..-
T Consensus 206 evl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 206 EVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 8888877652 45566667666666665555556666666654421100
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHH-
Q 009143 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG-------DIVKAREFLLSMLEKSVVPEPH- 402 (542)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~- 402 (542)
+..-..|+-.|.+.+++.+|..+..++.. ..|-......++. ...| ...-|.+.|+-.-+.+..-|..
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp 360 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AALGQETGSREHLKIAQQFFQLVGESALECDTIP 360 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HHhhhhcCcHHHHHHHHHHHHHhccccccccccc
Confidence 01112223334444555555544443321 1111111111111 1111 1223333333333332221211
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHH-H
Q 009143 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYT-E 481 (542)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ 481 (542)
--.++...+.-..++++++..+..+...-...|...||..- +.+..|.+.+|+++|-++....++ |..+|. .
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQ------Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~ 433 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQ------AKLATGNYVEAEELFIRISGPEIK-NKILYKSM 433 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHH------HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHH
Confidence 12334444555555666655555555543344444444332 255567777787777766654333 444554 4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHcCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 482 LIKGHCARGNMKEAEEVFAKIQTLGLAIDH-IPFRILKKRYRRMKESDKARDIHQKW 537 (542)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (542)
|.++|.+.++++-|.+++-++... .+. .....+..-|.+.+.+--|.+.|...
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 556777777777776665444322 222 23344455677777776666666554
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=3.5e-09 Score=102.87 Aligned_cols=245 Identities=20% Similarity=0.170 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--
Q 009143 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADD---DGKATSDVIT-STILMDSYFKNGDKFQALALWNDMFQK-----N-- 291 (542)
Q Consensus 223 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-- 291 (542)
..+...+...|...|+++.|+.+++..++.- .+...+.+.+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3566668888888888888888888777640 0000033332 333666777777777777777776542 1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 009143 292 IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-----GF-LPDV-ITYNTLLNCLCKQGKLDEASHFYGVLSKT---G 361 (542)
Q Consensus 292 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 361 (542)
.+.-..+++.|...|.+.|++++|...+++..+- |. .|.+ .-++.+...++..+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1222345566666677777777776666655431 11 1111 22444555556666666666665543321 0
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 362 VAPD----QISYKTIIQGLCIHGDIVKAREFLLSMLEKS-------VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 362 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
+.++ ..+++.+...|...|++++|.+++++++... ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~- 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD- 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH-
Confidence 1111 2345555555555555555555555554321 011122344455555555555555555444332
Q ss_pred CCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009143 431 GVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGI-TPDI-ITYTELIKGHCARGNMKEAEEVFAKIQ 503 (542)
Q Consensus 431 ~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (542)
+. ...|. .|+. .+|..|...|.+.|++++|.++.+...
T Consensus 438 --------------------------------i~---~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 --------------------------------IM---KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------------------HH---HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 01 11121 2343 688899999999999999999888766
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.7e-08 Score=91.57 Aligned_cols=406 Identities=16% Similarity=0.144 Sum_probs=221.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH--HHHHHH--HcCChhHH
Q 009143 97 NLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNY--LVNELC--KIGDLEKA 172 (542)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~--~~g~~~~A 172 (542)
.++++......+.. ..+.+...+..-+-++.+.+++++|+.+.+.-.. ..+++. +=.+|| +.+..|+|
T Consensus 27 e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 27 EYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccHHHH
Confidence 44444444444331 2234555666667778888888888754433221 011111 233443 57888888
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChH--HHHHHHHHHHhcCChhHHHHHHHHHH
Q 009143 173 DHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRV--THNILVHALCKKGLLGDAVKFLGEVL 250 (542)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 250 (542)
...++-.. ..+..+...-...+.+.|++++|+++|+.+.+.+.+ +.. .-..++.+- ..-.+. +.+...
T Consensus 99 lk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~----a~l~~~-~~q~v~ 168 (652)
T KOG2376|consen 99 LKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA----AALQVQ-LLQSVP 168 (652)
T ss_pred HHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH----HhhhHH-HHHhcc
Confidence 77776221 123335556667777888888888888888776432 221 111111111 111111 121111
Q ss_pred hCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHhCCCHHHHH
Q 009143 251 ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-------NIQTDIV-------AYNVLINGFCLNGDISSAF 316 (542)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~li~~~~~~~~~~~A~ 316 (542)
. ....+-..+....-.+...|++.+|+++++...+. +-.-+.. +-..|...+...|+..+|.
T Consensus 169 ~----v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 169 E----VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred C----CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1 11123333444455677889999999999988322 1111111 1233455677889999999
Q ss_pred HHHHHHHHcCCCCCHHHH----HHHHHHHHhcCC-H----------------HHHHHHH---------------------
Q 009143 317 AYFCQMLKRGFLPDVITY----NTLLNCLCKQGK-L----------------DEASHFY--------------------- 354 (542)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~-~----------------~~A~~~~--------------------- 354 (542)
.+|...++.. .+|.... |.|+.. ..-.+ + +.+...+
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999998875 3333221 111111 00000 0 0000000
Q ss_pred ----HHHHHC--CCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-
Q 009143 355 ----GVLSKT--GVAPDQISYKTIIQGLC--IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRD- 425 (542)
Q Consensus 355 ----~~~~~~--~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~- 425 (542)
.+.... +..|. ..+..++.... +.....+|.+++...-+..+.-.....-.++......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 000000 11222 22333333322 222466777777776665544335566667777888999999999999
Q ss_pred -------HHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh--CCCCCCHHHHH----HHHHHHHhcCCH
Q 009143 426 -------LMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR--RGITPDIITYT----ELIKGHCARGNM 492 (542)
Q Consensus 426 -------~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~~~~----~li~~~~~~g~~ 492 (542)
.+.+.+..|..+.+...+ +.+.++-+.|..++.+.+. ..-.+...... -++..-.+.|+-
T Consensus 402 ~~~~~~ss~~~~~~~P~~V~aiv~l-------~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGTVGAIVAL-------YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HhhhhhhhhhhhccChhHHHHHHHH-------HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 666666677776655555 4566676667777776664 11122223333 333444578999
Q ss_pred HHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 009143 493 KEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQK 536 (542)
Q Consensus 493 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (542)
++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-++
T Consensus 475 ~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 475 EEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999853 46888888888888754 45666655443
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-07 Score=85.78 Aligned_cols=299 Identities=13% Similarity=0.021 Sum_probs=219.7
Q ss_pred HHHHHHHH--cCChhhHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Q 009143 193 AFITGYCR--VNELDKALHLFSTMANN-GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (542)
Q Consensus 193 ~li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (542)
..+.++++ .++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|++....++ .++.......-
T Consensus 199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp----y~i~~MD~Ya~ 274 (564)
T KOG1174|consen 199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP----DNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh----hhhhhHHHHHH
Confidence 34444443 34444454444433332 2566778889999999999999999999999998776 56666666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009143 270 SYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE 349 (542)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (542)
.+.+.|+.+....+...+.... .-....|..-+......++++.|+.+-++..+.. +-+...|..-...+...+++++
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHH
Confidence 7788999999999888887653 2345556666666777899999999999988764 3345555555567888999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HhcCChHHHHHHHHHH
Q 009143 350 ASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVII-DGY-GRCGDLSNAFSIRDLM 427 (542)
Q Consensus 350 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~A~~~~~~m 427 (542)
|.-.|+...... +-+...|.-|++.|...|++.+|.-+-+...+.-. -+..+...+. ..+ .....-++|.++++..
T Consensus 353 A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999887752 34688999999999999999999887777665422 2555555543 222 2233457888888887
Q ss_pred HhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCC
Q 009143 428 LSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 507 (542)
Q Consensus 428 ~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 507 (542)
.. +.|+..--...+.-+ +...|..++++.++++.... .||....+.|.+.+...+.+++|.+.|....+.++
T Consensus 431 L~--~~P~Y~~AV~~~AEL----~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 431 LK--INPIYTPAVNLIAEL----CQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred hc--cCCccHHHHHHHHHH----HHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 76 456653332222221 55679999999999998875 78999999999999999999999999998887643
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=5.2e-09 Score=87.89 Aligned_cols=206 Identities=18% Similarity=0.134 Sum_probs=169.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
+...|.-.|.+.|++..|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|+......| .+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 55667778999999999999999999874 23566888899999999999999999999988776 37788899999999
Q ss_pred HcCChhhHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 200 RVNELDKALHLFSTMANNG-IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
..|++++|...|++....- ..--..||..+.-+..+.|+.+.|...|++.++.++ ....+...+.+...+.|++-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp----~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP----QFPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc----CCChHHHHHHHHHHhcccch
Confidence 9999999999999988753 222356788888888899999999999999999887 66677888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 334 (542)
.|...++.....+ .++..+.-..|..--..|+.+.+-+.=.++.+. -|...-|
T Consensus 191 ~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9999998888777 488888888888888889988888777777665 4544433
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=2.1e-09 Score=104.40 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=119.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-H
Q 009143 337 LLNCLCKQGKLDEASHFYGVLSKT-----GV-AP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEK-----SV-VPEP-H 402 (542)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~ 402 (542)
+...|...+++++|..+|+++... |- .| -..+++.|..+|.+.|++++|...+++..+. +. .|.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555556666666655555432 10 11 1224444555566666666665555554321 11 1111 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHhhcccccccCChHHHHHHHHHHHhC-----
Q 009143 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSF---GVSSNV----FTFNALILAETRGASCNLGHIHLALQLYDEMLRR----- 470 (542)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~----~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~----- 470 (542)
.++.++..++..+++++|..+++...+. -+.++. .+++.+-.. |.+.|++++|.+++++++..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l-----~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL-----YLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH-----HHHhcchhHHHHHHHHHHHHHHhcc
Confidence 3555666667777777777777665431 122222 234444433 56677888888777777641
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhH----cCCC-C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 471 G-ITPD-IITYTELIKGHCARGNMKEAEEVFAKIQT----LGLA-I-DHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 471 g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
| ..+. ...++.|...|.+.+++++|.++|.+... .|.. | ...+|..|...|.+.|+++.|.++.++.+.
T Consensus 402 ~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 402 GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 1222 35678899999999999999999987543 3321 2 246789999999999999999999998863
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1e-11 Score=80.93 Aligned_cols=50 Identities=46% Similarity=0.990 Sum_probs=40.4
Q ss_pred CCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 009143 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 235 (542)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.6e-11 Score=79.94 Aligned_cols=49 Identities=49% Similarity=0.920 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009143 294 TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (542)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (542)
||..+|+++|++|++.|++++|+++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.5e-08 Score=94.41 Aligned_cols=225 Identities=13% Similarity=0.025 Sum_probs=121.2
Q ss_pred ChhhHHHHHHHHHHCC-CCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 009143 203 ELDKALHLFSTMANNG-IRPN--RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (542)
Q Consensus 203 ~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (542)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++.++..+ .+..+|+.+...+...|++++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP----DMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHCCCHHH
Confidence 3444555555554321 1111 23455556666666777777777776666655 556666777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 280 ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
|...|++..+.. +.+..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+.....
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777766654 334556666666666677777777777776665 33322111222223345567777777755443
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009143 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLE---KSV---VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS 433 (542)
Q Consensus 360 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (542)
.. .|+...+ .+. ....|+...+ +.+..+.+ ..+ +.....|..+...+.+.|++++|...|++..+.+ .
T Consensus 194 ~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 KL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred hC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 21 2222211 122 2223443332 23333321 111 0123467777788888888888888888877643 2
Q ss_pred CCHHHHH
Q 009143 434 SNVFTFN 440 (542)
Q Consensus 434 p~~~~~~ 440 (542)
||.+.+.
T Consensus 268 ~~~~e~~ 274 (296)
T PRK11189 268 YNFVEHR 274 (296)
T ss_pred chHHHHH
Confidence 3444333
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=2.2e-08 Score=84.25 Aligned_cols=199 Identities=19% Similarity=0.086 Sum_probs=144.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 235 (542)
...|.-.|...|++..|..-+++.++..|+ +..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344566678888888888888888877653 66778888888888888888888888877653 2245667777777788
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
.|++++|...|++.+...... .-..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~--~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCC--CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 888888888888887754423 455677777777788888888888888877765 44555666777777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
...++.....+. ++..+....|..-...|+.+.+.+.=..+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 887777776653 77777777777777777777776666555553
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=4.4e-07 Score=81.08 Aligned_cols=368 Identities=10% Similarity=0.051 Sum_probs=160.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
++...+..|.....-.|.+.+|..+-.+..+ ++..-..+.....+.|+-++-..+-..+.+ ...---+|.
T Consensus 89 ~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLA 158 (557)
T KOG3785|consen 89 APAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLA 158 (557)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHH
Confidence 4444555554444445666666554433221 223333344444455554444444333322 111222333
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNI-LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (542)
......-.+++|++++.+....+ |+-...+. +.-.|.+..-++-+.++++-.+..-+ .+..+.|.......+.
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p----dStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP----DSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC----CcHHHHHHHHHHHhhh
Confidence 33333445566666666665432 33333332 23344455555666666665555443 4445555544444443
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH-------------------------------HHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 275 GDKFQALALWNDMFQKNIQTDIVA-------------------------------YNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~-------------------------------~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
=+-..|.+-...+.+.+-..-+.. --.|+-.|.+.+++.+|..+.+++.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 333333333344433321110000 0112223445555555555554432
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 324 KRGFLPDVITYNTLLNCLCKQG-------KLDEASHFYGVLSKTGVAPDQ-ISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 324 ~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
-. .|-......+.. ...| ...-|.+.|...-.++..-|. ..-.++...+.-..++++.+-.+..+..-
T Consensus 313 Pt--tP~EyilKgvv~--aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 313 PT--TPYEYILKGVVF--AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred CC--ChHHHHHHHHHH--HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122222222221 1222 233444444444333332222 22333444444455566666555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCC
Q 009143 396 SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPD 475 (542)
Q Consensus 396 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 475 (542)
-...|...+ .+.++++..|++.+|.++|-++....+ .|..+|.+++.-| |.+.+.++.|+.++-++-. +.+
T Consensus 389 F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArC----yi~nkkP~lAW~~~lk~~t---~~e 459 (557)
T KOG3785|consen 389 FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARC----YIRNKKPQLAWDMMLKTNT---PSE 459 (557)
T ss_pred hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHH----HHhcCCchHHHHHHHhcCC---chh
Confidence 333233333 345566666666666666655543221 3445555555554 5555666666555544332 112
Q ss_pred HHHH-HHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHH
Q 009143 476 IITY-TELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPF 514 (542)
Q Consensus 476 ~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 514 (542)
.... ..+...|.+.+.+--|.+.|+.+... .|++.-|
T Consensus 460 ~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 460 RFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 2222 22334555566666566666555544 3444444
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=1.8e-07 Score=90.48 Aligned_cols=304 Identities=13% Similarity=0.052 Sum_probs=174.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCh-hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGT-VPDV-LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (542)
....|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..|. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 344667777777777888887777776655421 1222 12222334466789999999999988876653 4444442
Q ss_pred HHHHHH----cCChhhHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Q 009143 195 ITGYCR----VNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (542)
Q Consensus 195 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (542)
...+.. .+..+.+.+.++. .....|+ ......+...+...|++++|.+.+++.++..+ .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p----~~~~~~~~la~ 156 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP----DDAWAVHAVAH 156 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCcHHHHHHHH
Confidence 222222 3444555555544 1112233 33444566777888999999999999988776 66778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHH
Q 009143 270 SYFKNGDKFQALALWNDMFQKNI-QTDI--VAYNVLINGFCLNGDISSAFAYFCQMLKRGF-LPDVITY-N--TLLNCLC 342 (542)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~-~--~li~~~~ 342 (542)
.+...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 89999999999999888876532 1222 3455677888888999999999988754321 1111111 1 2222333
Q ss_pred hcCCHHHHHHH---HHHHHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHH
Q 009143 343 KQGKLDEASHF---YGVLSKTGVAPDQISY--KTIIQGLCIHGDIVKAREFLLSMLEKSVVP--------EPHIWNVIID 409 (542)
Q Consensus 343 ~~g~~~~A~~~---~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~li~ 409 (542)
..|..+.+.++ ....... .+.....+ .....++...|+.++|..++..+......+ .+...-...-
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWH-FPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 34433333332 1111111 01111112 234455666777888888887776532110 1111122223
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 009143 410 GYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~ 429 (542)
++...|++++|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777766654
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=2.3e-08 Score=93.20 Aligned_cols=122 Identities=15% Similarity=0.014 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhH
Q 009143 131 GGKIGTALWLRRKMIQKG-TVPD--VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (542)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (542)
.++.+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++..+..| .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 345555555555555431 1111 23345555555555666566555555555444 2455555555555555555555
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
.+.|++..+.. +-+..++..+..++...|++++|.+.++..++..+
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 55555555432 11234444555555555555555555555555443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=1.8e-07 Score=90.63 Aligned_cols=200 Identities=12% Similarity=0.040 Sum_probs=126.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CCH-HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHH
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PNC-ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 230 (542)
...|..+...+...|+.+.+.+.+....+..+. ++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 345666666677778888877777666554331 221 122223345567788999999888887652 223334332 2
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 231 HALCK----KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 231 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
..+.. .+..+.+.+.+..... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP----ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 22222 3444445544443111 112445556667778888888888888888888775 55567778888888
Q ss_pred HhCCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 307 CLNGDISSAFAYFCQMLKRGF-LPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888776531 1222 2355677778888888888888888754
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=4.1e-07 Score=79.36 Aligned_cols=293 Identities=13% Similarity=0.144 Sum_probs=198.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHH-HHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA-FITGY 198 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~ 198 (542)
-+++.+..+.+..++.+|++++..-.++. +.+....+.|..+|....++..|-..++++-... |...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 36777777888889999999888877763 2266778888888889999999999998887644 34443332 24566
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCChHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILV--HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
.+.+.+..|+.+...|... |+...-..-+ ......+++..+..++++.... .+..+.+...-...+.|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e------n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE------NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC------Cccchhccchheeecccc
Confidence 7788899999998888653 2222221122 2234577888888888776432 344455666667788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------------CCHHH--------HH
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFL-------------PDVIT--------YN 335 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-------------p~~~~--------~~ 335 (542)
++.|.+-|+...+-+--.....|+.-+ +..+.++++.|+++..++.++|++ ||+.. -+
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 999999999888865445556676554 455678899999999888877643 12111 12
Q ss_pred HHHH-------HHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009143 336 TLLN-------CLCKQGKLDEASHFYGVLSKT-GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI 407 (542)
Q Consensus 336 ~li~-------~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (542)
.++. .+.+.|+++.|.+.+..|..+ ....|+.|...+.-.= -.+++.+..+-+.-+++.++- ...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 2333 345678888888888777543 2344566655443221 235566666666666666664 56788888
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 009143 408 IDGYGRCGDLSNAFSIRDLM 427 (542)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m 427 (542)
+-.||+..-++-|-.++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 88999999898888887653
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.8e-07 Score=87.00 Aligned_cols=370 Identities=18% Similarity=0.127 Sum_probs=246.7
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC
Q 009143 160 VNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGL 238 (542)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 238 (542)
..+.+..|+++.|+..|-+.....|. |.+.|..-..+|...|++++|++=-.+-++. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45667889999999999999988774 8899999999999999999999877776664 566 4689999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhC---
Q 009143 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ---ALALWNDMFQK---NIQTDIVAYNVLINGFCLN--- 309 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~--- 309 (542)
+++|+.-|.+-++.++ .+...++.+.+++.......+ --.++..+... ........|..++...-+.
T Consensus 86 ~~eA~~ay~~GL~~d~----~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP----SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcCC----chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999999999887 888999999988822110000 00111111110 0000111233333222111
Q ss_pred -------CCHHHHHHHHHHH-----HHcC-------CCC----------------------CHHHHHHHHHHHHhcCCHH
Q 009143 310 -------GDISSAFAYFCQM-----LKRG-------FLP----------------------DVITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 310 -------~~~~~A~~~~~~~-----~~~~-------~~p----------------------~~~~~~~li~~~~~~g~~~ 348 (542)
.+...+...+... ...| ..| -..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 1111222111110 0001 111 0112455677777788889
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhcCChHHHH
Q 009143 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV-------IIDGYGRCGDLSNAF 421 (542)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~ 421 (542)
.|.+-+....... -+..-++....+|...|.+.+.........+.|-. ...-|+. +..+|.+.++++.+.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999888887754 45556667777888888888888777777666543 2233333 344566678889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh--------------------hcccccccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009143 422 SIRDLMLSFGVSSNVFTFNALILAE--------------------TRGASCNLGHIHLALQLYDEMLRRGITPDIITYTE 481 (542)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~ll~~~--------------------~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 481 (542)
..|.+....-..|+..+-.....-- ..+.+.+.|++..|++.+.+++... +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 9988877644444443211111000 0233667899999999999999875 346789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 482 LIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
..-+|.+.|.+.+|..=.+...+... +....|..=..++....++++|.+.|++.++.|
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998888887632 344556666677788889999999999998876
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.1e-06 Score=96.27 Aligned_cols=344 Identities=13% Similarity=0.033 Sum_probs=215.3
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---CC--cHHHHHHHHHHH
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKA---TS--DVITSTILMDSY 271 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 271 (542)
.....|+++.+..+++.+.......+..........+...|+++++...+......-.... .+ .......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766552211111222334445556688999999999988765321000 01 122333445566
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHH
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKRGF---LP--DVITYNTLLNCLC 342 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~~~ 342 (542)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.....- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999998763212221 3456667778889999999999988775311 11 1234556677788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 009143 343 KQGKLDEASHFYGVLSKT----GVA--P-DQISYKTIIQGLCIHGDIVKAREFLLSMLEK----SVVPEPHIWNVIIDGY 411 (542)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~ 411 (542)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 211 1 1223445556677789999999999887653 1111234455567778
Q ss_pred HhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHH
Q 009143 412 GRCGDLSNAFSIRDLMLSFGV-SSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDI---ITYTELIKGHC 487 (542)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~li~~~~ 487 (542)
...|++++|...++....... ......+...........+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 899999999999988754210 11111111110000000133468999999998776542111111 12456777888
Q ss_pred hcCCHHHHHHHHHHHhHc----CCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 488 ARGNMKEAEEVFAKIQTL----GLAID-HIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.++++.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987653 33222 245667778899999999999999999763
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=7e-06 Score=73.33 Aligned_cols=304 Identities=12% Similarity=0.073 Sum_probs=225.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHh-HHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT-YNAF 194 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 194 (542)
.++.-+.-+...+.-.|++.+|+.-|...++.. +.+-.++..-...|...|+..-|+.=+.++++. +||-.. --.-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 466667788899999999999999999988752 223334455566789999999999999998884 456322 2223
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCCC--hHH------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCc
Q 009143 195 ITGYCRVNELDKALHLFSTMANNGIRPN--RVT------------HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD 260 (542)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (542)
...+.+.|.+++|..=|+...+.....+ ... ....+..+.-.|+...|+.....+++..+ -+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~----Wd 188 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP----WD 188 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc----ch
Confidence 4567889999999999999987632111 111 22334556678999999999999999887 88
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----HHH
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT----YNT 336 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~ 336 (542)
...|..-..+|...|++..|+.=++...+.. ..++.++..+-..+...|+.+.++...++.++. .||... |..
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence 9999999999999999999998887776654 456777777888889999999999999999876 566432 211
Q ss_pred H---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009143 337 L---------LNCLCKQGKLDEASHFYGVLSKTGVAPDQ---ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIW 404 (542)
Q Consensus 337 l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (542)
| +......+++.++....+...+....... ..+..+-.++...|++.+|++...++++-.+. |+.++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHH
Confidence 1 12234456777777777777765433122 23445556667788899999999999886543 68888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 405 NVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
.--..+|.-...++.|+.-|+...+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88889999999999999999998874
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=5.9e-07 Score=79.97 Aligned_cols=203 Identities=16% Similarity=0.071 Sum_probs=118.8
Q ss_pred CHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHH
Q 009143 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (542)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (542)
++.-.--+...+...|++..|+.-|....+.. +-+-.++-.-...|...|+-..|+.-+..+++..+ .-..+...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp----DF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP----DFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc----cHHHHHHH
Confidence 34444456666777777777777777766531 11223333345567777777777777777777554 33344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHH------------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 009143 267 LMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAY------------NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVI 332 (542)
Q Consensus 267 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~------------~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 332 (542)
-...+.+.|.+++|..=|+..++..... ....+ ...+..+...|+...|++....+++-. +.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 5566777888888888888777663111 11111 122333445566666666666666642 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009143 333 TYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS 396 (542)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 396 (542)
.|..-..+|...|.+..|+.=+....+.. ..+..++--+-..+...|+.+.++...++.++.+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 66666666666777666666555554432 2234444455555666677666666666666543
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.2e-07 Score=80.97 Aligned_cols=206 Identities=15% Similarity=0.125 Sum_probs=149.6
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHH
Q 009143 148 GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN 227 (542)
Q Consensus 148 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 227 (542)
|......-+.+.+..+.+..++++|++++..-.+..+ .+......|..+|....++..|-+.++++-.. .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 4444445578888888999999999999999888765 37788899999999999999999999999764 45555554
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 228 -ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 228 -~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
.-...+.+.+.+.+|+++...+..... .-......-.......+++..+..+.++....| +..+.+...-..
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~~~----L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDNPA----LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCHH----HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 235667789999999999988854311 111112222223345678888888888776433 455555566667
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009143 307 CLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP 364 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (542)
.+.|++++|.+-|....+-+--.....|+..+ +..+.|+.+.|++...+++++|++.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 78899999999999888764333456676544 4557789999999999999988753
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=2e-08 Score=92.20 Aligned_cols=150 Identities=16% Similarity=0.071 Sum_probs=85.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----Q 344 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 344 (542)
..+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. . +..+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCc
Confidence 4444556666665555432 24455555666666666666666666666654 2 22333334444332 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 009143 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDL-SNAFSI 423 (542)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~ 423 (542)
+.+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+..+.+.. ++.+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3567777777776554 4456666666777777777777777777777665554 556666666666666665 555566
Q ss_pred HHHHHh
Q 009143 424 RDLMLS 429 (542)
Q Consensus 424 ~~~m~~ 429 (542)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 666655
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.3e-06 Score=79.96 Aligned_cols=366 Identities=16% Similarity=0.068 Sum_probs=180.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (542)
+|.+.|..=..+|...|++++|++=-.+-++. .|+ ...|+....++.-.|++++|+..|.+-++..+ .+...++-+
T Consensus 34 ~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~gl 110 (539)
T KOG0548|consen 34 TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP-SNKQLKTGL 110 (539)
T ss_pred CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC-chHHHHHhH
Confidence 36667777777777777777777655555543 344 44677777777777777777777777776554 255566666
Q ss_pred HHHHHHcCChhhH---HHHHHHHHHC---CCCCChHHHHHHHHHHHhc-------CChhHHHHHHHHHHhCCC-------
Q 009143 195 ITGYCRVNELDKA---LHLFSTMANN---GIRPNRVTHNILVHALCKK-------GLLGDAVKFLGEVLADDD------- 254 (542)
Q Consensus 195 i~~~~~~g~~~~A---~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~-------g~~~~a~~~~~~~~~~~~------- 254 (542)
..++.......+. -.++..+... ........|..++..+-+. .+.+...+....+...+.
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 6655111000000 0011111100 0000111222222221110 011111111111111000
Q ss_pred -C----CCCC----------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009143 255 -G----KATS----------------------DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (542)
Q Consensus 255 -~----~~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (542)
. ...| -..-...+++...+..+++.|.+.+....+.. .+..-++....+|.
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~ 268 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYL 268 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHH
Confidence 0 0000 01134556677777777777777777777654 44555566666777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 009143 308 LNGDISSAFAYFCQMLKRGFLPDVITYN-------TLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (542)
Q Consensus 308 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (542)
..|.+.++...-....+.|.. ...-|+ .+..+|.+.++++.+...|.+.......|+.. .+..
T Consensus 269 e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk 338 (539)
T KOG0548|consen 269 ERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLK 338 (539)
T ss_pred hccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHH
Confidence 777777777666666655422 122222 23334555666777777777655443333221 1122
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHH
Q 009143 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLA 460 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A 460 (542)
..+++........-.++.. ..-...-...+.+.|++..|+..|.+++... +-|...|...-.+ |.+.|.+..|
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac-----~~kL~~~~~a 411 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC-----YLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH-----HHHHhhHHHH
Confidence 2333333333322222111 1111122445566677777777777776653 2233444444333 5566777777
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 461 LQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 461 ~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
++-.+..++. .|+ ...|.-=..++....+|++|.+.|++..+.
T Consensus 412 L~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 412 LKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7766666654 233 233433344445556667777777766665
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=4.7e-06 Score=82.27 Aligned_cols=406 Identities=14% Similarity=0.044 Sum_probs=256.1
Q ss_pred HHhcCChHHHHHH----HHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCC
Q 009143 128 LCLGGKIGTALWL----RRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (542)
Q Consensus 128 ~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (542)
+.-..+.+++... +.++....+..+...|..+.-++...|+++.+.+.|++....-. -....|+.+...|...|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhcc
Confidence 3344555666533 33333344556888899999999999999999999999875433 366789999999999999
Q ss_pred hhhHHHHHHHHHHCCCCC-ChHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHhcC-----
Q 009143 204 LDKALHLFSTMANNGIRP-NRVTHNILVHALC-KKGLLGDAVKFLGEVLADDDG-KATSDVITSTILMDSYFKNG----- 275 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g----- 275 (542)
-..|..+++.-....-.| +...+......|. +.+..++++.+-.+++..... ........|..+.-+|...-
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 999999998865543224 4444554445554 457788888888777762210 11133455555555554321
Q ss_pred ------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009143 276 ------DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE 349 (542)
Q Consensus 276 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (542)
...++++.+++..+.+ +.|+.....+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+
T Consensus 453 ~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 2457788888888776 455555555666788889999999999999998667788899999989999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------CCCCCH
Q 009143 350 ASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK----------------------------SVVPEP 401 (542)
Q Consensus 350 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~ 401 (542)
|+.+.+.....- ..|......-++.-..-++.++++.....++.. ...-..
T Consensus 532 Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 532 ALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 999988766531 111111111122222346666666555544321 000011
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHH-HHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHH
Q 009143 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS--SNVFTFNA-LILAETRGASCNLGHIHLALQLYDEMLRRGITPDIIT 478 (542)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~-ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 478 (542)
.++..+..-.... .+.+..-.. +...-+. |+...+.. .+.......+.+.+..++|...+.+..... .-....
T Consensus 611 s~sr~ls~l~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~ 686 (799)
T KOG4162|consen 611 STSRYLSSLVASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASV 686 (799)
T ss_pred hhhHHHHHHHHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHH
Confidence 1222211111100 000000000 1111112 22111111 000011123667788999998888887752 334577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHH--HHHHHhhcC
Q 009143 479 YTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARD--IHQKWLLRN 541 (542)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~l~~~ 541 (542)
|......+...|.+.+|.+.|......++ .++....++..++.+.|+...|.. ++..+++.|
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 77888888899999999999999888643 356678899999999999888888 888887765
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=2.8e-06 Score=93.18 Aligned_cols=338 Identities=14% Similarity=0.072 Sum_probs=212.6
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCC--C----CCC--hHHHHHHHHHHH
Q 009143 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG--I----RPN--RVTHNILVHALC 234 (542)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~--~~~~~~l~~~~~ 234 (542)
....|+++.+...++.+.......+..........+...|++++|..+++.....- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44567777776666654211111122223344555667899999999998875431 0 111 122223345566
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATS--DVITSTILMDSYFKNGDKFQALALWNDMFQK----NI-QTDIVAYNVLINGFC 307 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 307 (542)
..|++++|...+++........ .. .....+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 8999999999999988743211 01 1245567777888999999999999888653 11 112245566777888
Q ss_pred hCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHH
Q 009143 308 LNGDISSAFAYFCQMLKR----GFL--P-DVITYNTLLNCLCKQGKLDEASHFYGVLSKTG--VAP--DQISYKTIIQGL 376 (542)
Q Consensus 308 ~~~~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 376 (542)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999999887653 211 1 22334555667778899999999988775531 112 233444456677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHhh
Q 009143 377 CIHGDIVKAREFLLSMLEKSVVP-EPHIW-----NVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT---FNALILAET 447 (542)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~ 447 (542)
...|+.++|.+.+.+........ ....+ ...+..+...|+.+.|...+.............. +..+..
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~--- 699 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR--- 699 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH---
Confidence 78999999999988875421110 11111 1122445568999999998877654221111111 112222
Q ss_pred cccccccCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcC
Q 009143 448 RGASCNLGHIHLALQLYDEMLRR----GITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (542)
.+...|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 700 --~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 --AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred --HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 256779999999999988762 33332 2466777888999999999999999988753
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.7e-07 Score=89.27 Aligned_cols=251 Identities=15% Similarity=0.096 Sum_probs=189.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
.-+.+.|++.+|.-.|+..++.+| .+..+|..|.......++-..|+..+++..+.+ +.+....-.|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDP----QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhCh----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 345688999999999999999888 899999999999999999999999999999886 677888889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCC
Q 009143 311 DISSAFAYFCQMLKRGFLP--------DVITYNTLLNCLCKQGKLDEASHFYGVLS-KTGVAPDQISYKTIIQGLCIHGD 381 (542)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 381 (542)
.-.+|+..++..++...+- +...-.. ..+.....+....++|-++. ..+..+|+.++..|.-.|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999999999887653110 0000000 11111222334455554444 44545788888888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhhcccccccCChHH
Q 009143 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV--FTFNALILAETRGASCNLGHIHL 459 (542)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~g~~~~ 459 (542)
+++|.+.|+.++...+. |...||.|...++...+.++|+..|.+.++ +.|+. .-||.-|. |...|.+++
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS------~mNlG~ykE 516 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGIS------CMNLGAYKE 516 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhh------hhhhhhHHH
Confidence 99999999999998776 899999999999999999999999999998 46664 45777775 678899999
Q ss_pred HHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009143 460 ALQLYDEMLRR---------GITPDIITYTELIKGHCARGNMKEAEE 497 (542)
Q Consensus 460 A~~~~~~~~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~ 497 (542)
|.+.|-+.+.. +..++...|.+|-.++.-.++.+-+.+
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99998877652 111233466666666666666664443
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.5e-05 Score=76.54 Aligned_cols=297 Identities=14% Similarity=0.099 Sum_probs=163.9
Q ss_pred HHHHHcCChhhHHHHHHHHHHCC-------CCC--C----hH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcH
Q 009143 196 TGYCRVNELDKALHLFSTMANNG-------IRP--N----RV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV 261 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g-------~~p--~----~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 261 (542)
..+...|++.+|+++++...+.+ -.- + .. .-..|.-++-..|+.++|.+++...++..+...+.-.
T Consensus 183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHH
Confidence 34556788888888888773221 000 0 01 1122444555788888888888888888772222222
Q ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------CCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 009143 262 ITSTILMDSYFKNGDKF-QALALWNDMFQKNI----------QTDIVAY-NVLINGFCLNGDISSAFAYFCQMLKRGFLP 329 (542)
Q Consensus 262 ~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~~~~p 329 (542)
..-|.|+..-....-.+ .++..++....... .-..... +.++..| .+..+.+.++...... ..|
T Consensus 263 v~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p 338 (652)
T KOG2376|consen 263 VAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSP 338 (652)
T ss_pred HHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCc
Confidence 33444443322222122 12222222211100 0011111 1122222 3344444444433222 233
Q ss_pred CHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCC
Q 009143 330 DVITYNTLLNC-LCK-QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLL--------SMLEKSVVP 399 (542)
Q Consensus 330 ~~~~~~~li~~-~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~ 399 (542)
.. .+..++.. ... ......+..++....+....-...+.-..+......|+++.|.+++. .+.+.+..|
T Consensus 339 ~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 339 ES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred hH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 33 33334333 322 22467777777776665333234566667777888999999999999 555555444
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHH
Q 009143 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF--GVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDII 477 (542)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 477 (542)
.+-.++...+.+.++-+.|..++...... .-.+.......++.-.+ ..-.+.|+.++|..+++++.+.. ++|..
T Consensus 418 --~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa-~f~lr~G~~~ea~s~leel~k~n-~~d~~ 493 (652)
T KOG2376|consen 418 --GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA-EFKLRHGNEEEASSLLEELVKFN-PNDTD 493 (652)
T ss_pred --hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh-HHHHhcCchHHHHHHHHHHHHhC-CchHH
Confidence 44556677778888877788888776652 11122223333332211 12445699999999999999853 56888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 478 TYTELIKGHCARGNMKEAEEVFAKI 502 (542)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m 502 (542)
+...++.+|++. +++.|..+-..+
T Consensus 494 ~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 494 LLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999887 678887776554
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=7e-06 Score=81.44 Aligned_cols=343 Identities=14% Similarity=0.115 Sum_probs=190.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CC--------CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-GT--------VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN 187 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 187 (542)
+...|..+.+.+.+.++++-|.-.+..|... |. .|+ ..-..+.......|.+++|..+|++..+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 4557999999999999988887666655432 11 121 2223334445677999999999888754
Q ss_pred HHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH----------HhCCCCC-
Q 009143 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEV----------LADDDGK- 256 (542)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~~- 256 (542)
|..|=..|-..|.|++|.++-+.=.+.. =..||......+-..++.+.|++.|++. +...+..
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 3345556667899999998876543322 2346666666666778888888777643 2222200
Q ss_pred -----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 009143 257 -----ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV 331 (542)
Q Consensus 257 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 331 (542)
...|...|.-...-+-..|+.+.|+.+|....+ |..+++..|-.|+.++|-++-++ .-|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccH
Confidence 002334445555555566777777777766543 34444555555666555554433 1244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCC------------CChh-----------hHHHHHHHHHh
Q 009143 332 ITYNTLLNCLCKQGKLDEASHFYGVLSKT----------GVA------------PDQI-----------SYKTIIQGLCI 378 (542)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~------------~~~~-----------~~~~li~~~~~ 378 (542)
.....+.+.|-..|++.+|..+|.+.... +.+ .|.. -...-+..|-+
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 44445556666666666666555443211 100 0000 00111122334
Q ss_pred cCCHHHHHHHHHH--------H--HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 009143 379 HGDIVKAREFLLS--------M--LEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR 448 (542)
Q Consensus 379 ~g~~~~A~~~~~~--------~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 448 (542)
.|.+.+|+++--+ + ...+...|+...+.-.+.++...++++|..++-...+ |...+.
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq---- 1114 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ---- 1114 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH----
Confidence 4444444433211 1 1123344666777777777777778888777766554 223332
Q ss_pred ccccccCChHHHHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 449 GASCNLGHIHLALQLYDEMLR-RGITPDI----ITYTELIKGHCARGNMKEAEEVFAKI 502 (542)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~-~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 502 (542)
.|+..++.-..++-+.|-- ..-.|+. .....+.+.|.++|.+..|.+-|.+.
T Consensus 1115 --lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1115 --LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred --HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 3444555555555444432 2123443 34567778888999988887766543
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=5e-08 Score=89.52 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 009143 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL-DEASHFY 354 (542)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 354 (542)
.+.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344455555554332 23444444444444445555555555444444332 22333444444444444444 3334444
Q ss_pred HHHHH
Q 009143 355 GVLSK 359 (542)
Q Consensus 355 ~~~~~ 359 (542)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44433
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3.6e-07 Score=87.09 Aligned_cols=253 Identities=15% Similarity=0.143 Sum_probs=118.0
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHH
Q 009143 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242 (542)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 242 (542)
+.+.|++.+|.-.|+...+..|. +...|..|.......++-..|+..+++..+.. +-|......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34455555555555555554442 45555555555555555555555555555432 11334444555555555555555
Q ss_pred HHHHHHHHhCCCCCC---C--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009143 243 VKFLGEVLADDDGKA---T--SDVITSTILMDSYFKNGDKFQALALWNDMFQ-KNIQTDIVAYNVLINGFCLNGDISSAF 316 (542)
Q Consensus 243 ~~~~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~ 316 (542)
.+.++..+...+... . .+...-.. ..+.....+....++|-++.. .+..+|+.....|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 555555443321000 0 00000000 111111222233333333332 222345555555555555666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 317 AYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD-QISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
+.|+.++... +-|...||.|...++...+.++|+..|.+..+. +|+ +.+...|.-.|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 6666655542 224455666666666666666666666665552 333 223333444555566666666555544321
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009143 396 ---------SVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (542)
Q Consensus 396 ---------~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (542)
...++...|.+|=.++.-.++.+-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 112233455555555555555554433
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=1.7e-06 Score=90.32 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=165.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP-----DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATY 191 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 191 (542)
+...|-..+....+.++.+.|++++++.+.. +.+ -...|.++++.-..-|.-+...++|+++.+.. .....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4457888888888888888888888888764 222 23467777777777787788888888886632 234567
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 009143 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (542)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (542)
..|...|.+.+++++|.++++.|.+. +......|...+..+.+.++-+.|..++.++++.-+.. ..+....-.+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~--eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ--EHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh--hhHHHHHHHHHHH
Confidence 78888888888888888888888765 34566788888888888888888888888888766533 4666777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCH
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV--ITYNTLLNCLCKQGKL 347 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~ 347 (542)
.+.|+.+.+..+|+..+... |--...|+..++.-.+.|+.+.+..+|++....++.|-. ..|...+..=-+.|+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 88888888888888887654 456677888888888888888888888888887766542 3344444433334443
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.88 E-value=8.6e-05 Score=70.66 Aligned_cols=409 Identities=11% Similarity=0.100 Sum_probs=239.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHH
Q 009143 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (542)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (542)
+-|..+|+.||+-+..+ .+++++..++++..- .+-....|..-|..-.+..+++....+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 35888999999887665 999999999999875 34456788899999999999999999999988644 467788887
Q ss_pred HHHHHHc-CChhh----HHHHHHHH-HHCCCCCCh-HHHHHHHHH---------HHhcCChhHHHHHHHHHHhCCCCCCC
Q 009143 195 ITGYCRV-NELDK----ALHLFSTM-ANNGIRPNR-VTHNILVHA---------LCKKGLLGDAVKFLGEVLADDDGKAT 258 (542)
Q Consensus 195 i~~~~~~-g~~~~----A~~~~~~m-~~~g~~p~~-~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~ 258 (542)
+..--+. ++... -.+.|+-. .+.|+.+-. ..|+..+.. +....+++...+++++++....
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm---- 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM---- 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc----
Confidence 7754433 33322 22233332 344544332 233333322 2334466778888888876543
Q ss_pred CcH-------HHHHHHHHHHH-------hcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHH
Q 009143 259 SDV-------ITSTILMDSYF-------KNGDKFQALALWNDMFQ--KNIQTDIVA---------------YNVLINGFC 307 (542)
Q Consensus 259 ~~~-------~~~~~l~~~~~-------~~g~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~li~~~~ 307 (542)
.+. ..|..-++... +...+..|.++++++.. +|+.....+ |-.+|.-=.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 222 12222222221 12345567777766643 232211111 333332211
Q ss_pred hCC------CH--HHHHHHHHHHH-HcCCCCCHHH-H----HHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCh
Q 009143 308 LNG------DI--SSAFAYFCQML-KRGFLPDVIT-Y----NTLLNCLCKQGK-------LDEASHFYGVLSKTGVAPDQ 366 (542)
Q Consensus 308 ~~~------~~--~~A~~~~~~~~-~~~~~p~~~~-~----~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~ 366 (542)
..+ .. ....-.+++.. -.+..|+... + ...-+.+...|+ .+++..+++.....-..-+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 00 01111222211 1222332211 0 111112233333 34445555544433222223
Q ss_pred hhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 009143 367 ISYKTIIQGLCI---HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS-NVFTFNAL 442 (542)
Q Consensus 367 ~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l 442 (542)
..|..+.+.--. .+..+....++.+++..-..--..+|..++..-.+..-...|..+|.+..+.+..+ ++..++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 333333321111 11255566666666654333234567888888888888899999999999877777 67778888
Q ss_pred HHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCC--hhHHHHHHHH
Q 009143 443 ILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID--HIPFRILKKR 520 (542)
Q Consensus 443 l~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~ 520 (542)
+.- ...++.+-|.++|+-=++. ...++.--...++-+...|+-..|..+|++....++.+| ..+|..+++-
T Consensus 409 mEy------~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 409 MEY------YCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHH------HhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 874 3458888999999865553 122334445677788888888999999999988765554 4689999988
Q ss_pred HHhcCChhHHHHHHHHHh
Q 009143 521 YRRMKESDKARDIHQKWL 538 (542)
Q Consensus 521 ~~~~g~~~~A~~~~~~~l 538 (542)
-.+-|+.+.+.++-+++.
T Consensus 482 ES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 888899988888877764
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=2e-06 Score=89.91 Aligned_cols=210 Identities=13% Similarity=0.058 Sum_probs=159.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADD-DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN 300 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (542)
....|...+......++.++|.++.++++..= ......-...|.++++....-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 45678888888888899999999988887643 11111334578888888888888888888999888752 3345678
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhc
Q 009143 301 VLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-PDQISYKTIIQGLCIH 379 (542)
Q Consensus 301 ~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 379 (542)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+.=.+ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888899999999999999998876 3456778888888888888888888888887774211 1233444455556678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (542)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (542)
|+.+++..+|+..+...++ -...|+..++.-.++|+.+.+..+|++....++.|-
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8999999999888877655 677889999998999999999999999888766653
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=1.1e-06 Score=90.88 Aligned_cols=239 Identities=10% Similarity=0.027 Sum_probs=169.7
Q ss_pred CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhH
Q 009143 114 LET-DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV-LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATY 191 (542)
Q Consensus 114 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 191 (542)
..| +...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 344 5668999999999999999999999977765 3443 3444444567777776666443
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 009143 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (542)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (542)
.++.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++++.++ .++.+.|.+...|
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~----~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR----DNPEIVKKLATSY 160 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc----ccHHHHHHHHHHH
Confidence 2333333444554444455555553 23556888899999999999999999999999887 8999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEA 350 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 350 (542)
... ++++|.+++.+.... +...+++.++.+++.++... .|+ ...+..+.+
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------- 211 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------- 211 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH-----------
Confidence 999 999999999888753 66677888889999888876 333 223332222
Q ss_pred HHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009143 351 SHFYGVLSKT-GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412 (542)
Q Consensus 351 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 412 (542)
.+... |..--+.++-.+-..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus 212 -----ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 -----KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -----HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22221 22223445666667777888888999999998887766 6777777777776
No 104
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=5.2e-06 Score=77.36 Aligned_cols=214 Identities=14% Similarity=0.075 Sum_probs=147.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
+..+-..+...++.++|+.+..++++.. +-+..+|+.....+.+.| ++++++..++++.+..++ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3444445566788889999999988863 224456776666777777 578999999998887764 5667776666666
Q ss_pred HcCCh--hhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc---
Q 009143 200 RVNEL--DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN--- 274 (542)
Q Consensus 200 ~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 274 (542)
+.|+. ++++++++++.+... -|..+|....-++...|+++++++.++++++.++ .+..+|+.....+.+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~----~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV----RNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----CchhHHHHHHHHHHhcccc
Confidence 66653 677888888877643 3677888888888888888889999998888877 7777787777666554
Q ss_pred CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009143 275 GDK----FQALALWNDMFQKNIQTDIVAYNVLINGFCLN----GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343 (542)
Q Consensus 275 g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 343 (542)
|.. ++.+....+++... +-|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 45666666666554 56677777777777662 33455777776665543 3355666667776664
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.84 E-value=8.5e-06 Score=82.63 Aligned_cols=129 Identities=13% Similarity=0.100 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHH------------------------
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHV------------------------ 175 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~------------------------ 175 (542)
.|..|...|+...+...|.+.|++.-+.. ..+...+..+.+.|....+++.|..+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 56666666666666666666666665542 22444455555555555555555444
Q ss_pred ------------HHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHH
Q 009143 176 ------------IREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDA 242 (542)
Q Consensus 176 ------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 242 (542)
|+...+..| .|...|..++.+|.+.|++..|+++|.+.... .|+. ..---..-.-+..|++.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHH
Confidence 444444333 36667777777777777777777777776653 3332 1111222334566777777
Q ss_pred HHHHHHHHhC
Q 009143 243 VKFLGEVLAD 252 (542)
Q Consensus 243 ~~~~~~~~~~ 252 (542)
...+..++..
T Consensus 650 ld~l~~ii~~ 659 (1238)
T KOG1127|consen 650 LDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHH
Confidence 7777766653
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00017 Score=73.66 Aligned_cols=328 Identities=14% Similarity=0.131 Sum_probs=200.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGT--VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (542)
|+..-+..+.++...+-+.+-+++++++.-... ..+...-|.|+-...+ -+..+..+..+++-.... |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------H
Confidence 555556677788888888888888888764311 1122222333333333 344555566666543222 33 2
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc
Q 009143 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (542)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (542)
...+...+-+++|..+|++.. .+......|+. .-+.++.|.++-++. ....+|..+..+-.+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~---------n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC---------NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh---------CChHHHHHHHHHHHhc
Confidence 334455666788888877643 34555555554 346667777666655 5567888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009143 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (542)
|.+.+|.+-|-+. .|+..|.-+++...+.|.+++-.+++....+..-.|.. =+.||-+|++.+++.+.++++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh
Confidence 8888888776543 36777888889999999999988888877776555544 346788888888887766654
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009143 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (542)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 434 (542)
.-|+......+.+-|...|.++.|.-++.. +..|..|...+...|++..|...-++. .
T Consensus 1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------n 1247 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------N 1247 (1666)
T ss_pred -------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------c
Confidence 236676677777777777777777666543 334666777777777777776554433 2
Q ss_pred CHHHHHHHHHHhh-------------------------cccccccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 009143 435 NVFTFNALILAET-------------------------RGASCNLGHIHLALQLYDEMLRRGIT-PDIITYTELIKGHCA 488 (542)
Q Consensus 435 ~~~~~~~ll~~~~-------------------------~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~li~~~~~ 488 (542)
+..||..+-.+|. +..|-..|-+++-+.+++.... ++ .-...|+-|.-.|.+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSK 1325 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHh
Confidence 3345554444443 2224455666666666554432 22 122445555555544
Q ss_pred cCCHHHHHHHHHHH
Q 009143 489 RGNMKEAEEVFAKI 502 (542)
Q Consensus 489 ~g~~~~A~~~~~~m 502 (542)
- ++++..+.++-.
T Consensus 1326 y-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHLKLF 1338 (1666)
T ss_pred c-CHHHHHHHHHHH
Confidence 2 445544444433
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.5e-05 Score=80.83 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=140.8
Q ss_pred CChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHH
Q 009143 132 GKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHL 210 (542)
Q Consensus 132 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (542)
.+...|...|-+..+.. |+ ...|..|...|+...+..+|.+.|+...+.++ -+...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 34667777776666642 33 45789999999998899999999999998776 4788899999999999999999998
Q ss_pred HHHHHHCC-CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 211 FSTMANNG-IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 211 ~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
.-...+.. ...-...|....-.|.+.++...|..-|+..+..+| .|...|..++.+|...|++..|.++|.+...
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP----kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP----KDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc----hhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 43332211 011122344455567788999999999999999887 8999999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
.. |.+...-.......+..|.+.+|+..+.....
T Consensus 625 Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 625 LR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 64 22333333344456778999999988887654
No 108
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=1.1e-05 Score=75.26 Aligned_cols=205 Identities=12% Similarity=0.089 Sum_probs=138.9
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC-ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh--hH
Q 009143 165 KIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL--GD 241 (542)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~--~~ 241 (542)
..++.++|..+..++.+..|. +..+|+....++...| ++++++..++++.+...+ +..+|+...-.+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 346788999999998887663 5667777777777777 578999999988876432 455666655555666653 67
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCH----HH
Q 009143 242 AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN---GDI----SS 314 (542)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~----~~ 314 (542)
+..+++++++.++ .+..+|+.....+...|+++++++.++++++.+ +.|..+|+.....+.+. |.. ++
T Consensus 127 el~~~~kal~~dp----kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 127 ELEFTRKILSLDA----KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHhCc----ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 7888888888777 788889888888888899999999999998876 55667777666555444 222 35
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 009143 315 AFAYFCQMLKRGFLPDVITYNTLLNCLCKQ----GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378 (542)
Q Consensus 315 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 378 (542)
.++...++.... +-+...|+-+...+... ++..+|...+.+..+.+ +.+......|++.|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666665666552 33556666666666552 33445666666655532 2244555566666654
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=3.6e-05 Score=75.65 Aligned_cols=327 Identities=16% Similarity=0.074 Sum_probs=167.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (542)
..|..|....++++|+.+-+- .|.+.-...-.+.++.+...|+-++|- ++.+. +..+ -+.|+.|.+.|
T Consensus 562 ~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~----elk~s----dgd~-laaiqlyika~ 629 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAA----ELKES----DGDG-LAAIQLYIKAG 629 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhh----hhccc----cCcc-HHHHHHHHHcC
Confidence 345556666666666655332 222211223344555566667777763 33221 1111 24567788888
Q ss_pred ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-------------------CCCCCCcHH-
Q 009143 203 ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD-------------------DGKATSDVI- 262 (542)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~- 262 (542)
.+.+|......=.. +..|......+..++.+..-++.|-.+|+++..-+ ...+|..++
T Consensus 630 ~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~ 707 (1636)
T KOG3616|consen 630 KPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVK 707 (1636)
T ss_pred CchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhh
Confidence 87777665422111 22344444444444443333333333333332100 000001111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (542)
.-......+...|+++.|...|-+.. ..-.-+.+......|.+|+.+++.++.+. .-..-|..+...|.
T Consensus 708 lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhya 776 (1636)
T KOG3616|consen 708 LEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYA 776 (1636)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhc
Confidence 11122233334444444444443321 12233455566677788888887777653 23345666777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009143 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (542)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (542)
..|+++.|.++|.+. ..++-.|.+|.+.|+++.|.++-.+.. |+......|-+-..-+-++|++.+|.+
T Consensus 777 n~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred cchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 888888888877542 234556777888888888877765543 334445556666666677777777776
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 423 IRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 502 (542)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (542)
+|-.+. .|+.. |. +|-+.|..++.+++.++-.. ..-..|...+..-|-..|+.++|..-|-+.
T Consensus 846 lyiti~----~p~~a-----iq-----mydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 846 LYITIG----EPDKA-----IQ-----MYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred eeEEcc----CchHH-----HH-----HHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 654433 23321 11 14455666666655544321 111244555666666777777777665443
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=1.8e-06 Score=77.97 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=127.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH--HhHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTV-P-DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC--ATYN 192 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 192 (542)
....+..+...+.+.|+++.|...|++++..... | ...++..+...+.+.|++++|...++++.+..|.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4557888888999999999999999999875311 1 1246778889999999999999999999886654222 2455
Q ss_pred HHHHHHHHc--------CChhhHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHH
Q 009143 193 AFITGYCRV--------NELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVIT 263 (542)
Q Consensus 193 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 263 (542)
.+..++.+. |++++|.+.++.+.+. .|+. ..+..+.... . ... . ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~-------~----------~~~~ 168 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRN-------R----------LAGK 168 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHH-------H----------HHHH
Confidence 555555554 6788888888888765 2332 2222221110 0 000 0 0011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKNI--QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23566778888899999888888877631 234567888888888899999998888887665
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=7.1e-05 Score=76.21 Aligned_cols=335 Identities=13% Similarity=0.121 Sum_probs=220.9
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC--CCCCHHhHHHHHHHHHHcCChhhHHHHHHHH
Q 009143 139 WLRRKMIQKGTV--PDVLTHNYLVNELCKIGDLEKADHVIREMSEMR--PSPNCATYNAFITGYCRVNELDKALHLFSTM 214 (542)
Q Consensus 139 ~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 214 (542)
++.++.++.+++ .|+...+..+.++...+-..+-+++++++.-.. ..-+...-|.||-...+ -+..++.++.+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence 344444443322 345556667777788888888888888775321 11123334445444443 3445566666666
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009143 215 ANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT 294 (542)
Q Consensus 215 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (542)
..... |+ +...+...+-+++|..+|++.- .+..+.+.|+.- -++.+.|.+.-++.-
T Consensus 1047 dnyDa-~~------ia~iai~~~LyEEAF~ifkkf~--------~n~~A~~VLie~---i~~ldRA~efAe~~n------ 1102 (1666)
T KOG0985|consen 1047 DNYDA-PD------IAEIAIENQLYEEAFAIFKKFD--------MNVSAIQVLIEN---IGSLDRAYEFAERCN------ 1102 (1666)
T ss_pred ccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc--------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------
Confidence 54321 12 3344556677788888887652 455555555543 456677766655543
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009143 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQ 374 (542)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 374 (542)
.+..|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+.+....+....|.. -+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 5567999999999999999999887543 37788999999999999999999999888777655544 457888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccccc
Q 009143 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNL 454 (542)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 454 (542)
+|++.++..+-.+++. .||......+.+-|...|.++.|.-+|..... |..+... +.+.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~T-----LV~L 1233 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLAST-----LVYL 1233 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHH-----HHHH
Confidence 9999999877665542 37888888999999999999999888765542 3333332 4455
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 009143 455 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 534 (542)
Q Consensus 455 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (542)
|+++.|.+.-++.- +..||..+-.+|...+.+.-|. |....+.....-...++.-|...|-+++-+.++
T Consensus 1234 geyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 77777766554432 4567877777777776665442 333334444555666666777777777776666
Q ss_pred HHHh
Q 009143 535 QKWL 538 (542)
Q Consensus 535 ~~~l 538 (542)
+..|
T Consensus 1303 Ea~L 1306 (1666)
T KOG0985|consen 1303 EAGL 1306 (1666)
T ss_pred Hhhh
Confidence 6553
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.3e-05 Score=79.51 Aligned_cols=334 Identities=17% Similarity=0.140 Sum_probs=208.2
Q ss_pred ChhhHHHHHHH--HHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHC-C-------C-C
Q 009143 152 DVLTHNYLVNE--LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANN-G-------I-R 220 (542)
Q Consensus 152 ~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-------~-~ 220 (542)
|..|-..+++. |...|+.|.|.+..+.+. +...|..|.+.|.+..+.+-|.-.+-.|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 55666666643 667788888877766652 4577888999988888888777666555332 1 1 1
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009143 221 PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN 300 (542)
Q Consensus 221 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (542)
|+ .+-....-.....|.+++|+.++++... |..|=..|...|.+++|.++-+.--.. .=-.||.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy 862 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR------------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYY 862 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHH
Confidence 21 2222233334577888899988887754 333445677788888888876543222 1223555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 301 VLINGFCLNGDISSAFAYFCQML----------KRG---------FLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 301 ~li~~~~~~~~~~~A~~~~~~~~----------~~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (542)
.-...+-..++.+.|++.|++.. ... -..|...|.-....+-..|+.|.|+.+|.....
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 56666666788888888877532 111 012344455555566677888888888876543
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CC
Q 009143 362 VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG--------VS 433 (542)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~ 433 (542)
|-.++...|-.|+.++|-++-++-. |....--|.+.|...|++.+|...|-+..... -.
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556777778899999888776542 55566678899999999999999988765310 00
Q ss_pred CCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------Hh--
Q 009143 434 SNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK--------IQ-- 503 (542)
Q Consensus 434 p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~-- 503 (542)
.+...+|..+ .+...+.-.|-++|++.-- -+...+..|-++|.+.+|.++-=+ ++
T Consensus 1008 ~~d~L~nlal-------~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1008 MKDRLANLAL-------MSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHHHHHHh-------hcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 1112222222 1122334444445543321 122345567788888888765321 11
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 504 TLGLAIDHIPFRILKKRYRRMKESDKARDIHQKW 537 (542)
Q Consensus 504 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (542)
+.....|+...+...+-+....++++|..++-.+
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2344557788888888888888888888776554
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.2e-08 Score=58.37 Aligned_cols=33 Identities=42% Similarity=0.872 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009143 471 GITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 503 (542)
Q Consensus 471 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (542)
|+.||..||++||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=3.6e-06 Score=76.07 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 371 TIIQGLCIHGDIVKAREFLLSMLEKSVV--PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.+...|.+.|++.+|...++...+..+. .....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566677777777777777665321 1345666777777777777777777766655
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=8e-06 Score=80.23 Aligned_cols=212 Identities=15% Similarity=0.068 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 009143 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (542)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 236 (542)
..+...+.+.|-...|..+|+++ ..|..+|.+|+..|+..+|..+..+-.+ -+|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 34444455555555555555443 2233444455555555555555444443 234444554444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009143 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (542)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 316 (542)
.-+++|.++.+..-. .+-..+.......++++++.+.|+.-.+.+ +.-..+|..+..+..+.++++.|.
T Consensus 471 s~yEkawElsn~~sa----------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 471 SLYEKAWELSNYISA----------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred HHHHHHHHHhhhhhH----------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 444444444433221 111122222233445555555555444433 334444444444555555555555
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 317 AYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (542)
Q Consensus 317 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (542)
+.|...... .|| ...||.+-.+|.+.++..+|...+.+..+.+ .-+...|-..+....+.|.+++|++.+.++.
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 555544433 222 3345555555555555555555555554443 2223333333444444555555555554444
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=8.2e-06 Score=70.57 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 344 (542)
..+-..+...|+-+....+........ +.|......++....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444455555555555555555543322 3344445555666666666666666666665543 55566666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009143 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIR 424 (542)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (542)
|++++|..-|.+..+.. .-+...++.+.-.|.-.|+.+.|..++......+.. |...-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666655542 223445555555555566666666666666554433 5555555666666666666666554
Q ss_pred HH
Q 009143 425 DL 426 (542)
Q Consensus 425 ~~ 426 (542)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=2.3e-06 Score=83.87 Aligned_cols=217 Identities=15% Similarity=0.051 Sum_probs=161.7
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (542)
..-..+...+...|-...|..+++++.. |..++..|+..|+..+|..+..+-++ .+ ++...|..++
T Consensus 399 q~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~----~d~~lyc~LG 464 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KD----PDPRLYCLLG 464 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CC----CcchhHHHhh
Confidence 3445566777888888888888887653 45577788888888888888888777 33 7788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (542)
+.....--+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.. +....+|-.+.-+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8777777777888777765432 12222233344788888888888777653 345677877888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
.|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+++..+.+.. +...|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 8888888776632 334568888888999888888999888888887743 66777777888888889999988888876
Q ss_pred h
Q 009143 429 S 429 (542)
Q Consensus 429 ~ 429 (542)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 5
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=7.7e-05 Score=64.66 Aligned_cols=255 Identities=16% Similarity=0.098 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009143 84 QAVFNALDLILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL 163 (542)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 163 (542)
..+|++=..++-+++.....-...+. +.+.++..-..+-++|...|++...+. ++.. |-.|.......+....
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~---~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFS---SSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYL 82 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHh
Confidence 45666666666666554443333332 122333333444455666666543322 1111 1123333333333333
Q ss_pred HHcCChhHHH-HHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHH
Q 009143 164 CKIGDLEKAD-HVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242 (542)
Q Consensus 164 ~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 242 (542)
..-++.++-. ++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322 233333333332232222333445666677777766665411 222333333445566666677
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009143 243 VKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAY 318 (542)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 318 (542)
.+.+++|.+.+ +..+.+.|..+|.+ .+.+.+|.-+|++|-++- +|++.+.+-...++...|++++|..+
T Consensus 157 ~~~lk~mq~id------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 157 EKELKKMQQID------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHccc------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHH
Confidence 77776665532 33444444444443 345666666666666532 56666666666666666677777666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 009143 319 FCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA-SHFYGVLSK 359 (542)
Q Consensus 319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 359 (542)
++....+. .-++.+...++..-...|...++ .+.+..+..
T Consensus 230 L~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 230 LEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666653 33455555555555555544333 334444443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=5.3e-06 Score=71.95 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=86.7
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCC--hhHH
Q 009143 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHAL-CKKGL--LGDA 242 (542)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~--~~~a 242 (542)
.++.+++...++...+..| .+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4566677777777776665 467777777777777888888888887777653 23556666666653 55566 4777
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009143 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI 296 (542)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 296 (542)
.+++++.++.++ .+..++..+...+.+.|++++|...|+++.+.. +|+.
T Consensus 130 ~~~l~~al~~dP----~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 130 REMIDKALALDA----NEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHhCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 777877777776 667777777777777777777777777777664 3443
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.65 E-value=1.7e-05 Score=82.46 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=95.8
Q ss_pred CHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHH
Q 009143 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (542)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+.-+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------- 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL---------------- 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh----------------
Confidence 4566777777777777777777777765553 3433 3333333455556655444433 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009143 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG 345 (542)
Q Consensus 266 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 345 (542)
++......++..+..+...|.+. .-+...+..+..+|-+.|+.++|..+++++.+.. +-|+...|.+...|...
T Consensus 90 --l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 --IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 22222233333333333444433 2344466666667777777777777777777665 44566666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009143 346 KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS 396 (542)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 396 (542)
++++|.+++...... +...+++..+.++|.++....
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC
Confidence 677776666655443 444456666666666666543
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=5.8e-05 Score=74.24 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIR 424 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (542)
|...+..-|-..|+...|...|-+..+ |.+-+..|...+-|++|.++-
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 444455555566666666666544432 455556666666666665553
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=1.2e-05 Score=69.65 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=61.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC--H
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF-CLNGD--I 312 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~ 312 (542)
.++.+++...++..+..++ .+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P----~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP----QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCc
Confidence 3444455555555555444 555555555555555555555555555555543 33445555555442 34444 3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 313 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
++|.+++++..+.+ +-+...+..+...+...|++++|...|+.+.+.
T Consensus 127 ~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 127 PQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555555543 224445555555555555555555555555554
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=4.4e-08 Score=57.11 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 009143 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKM 144 (542)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 144 (542)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.3e-05 Score=69.37 Aligned_cols=158 Identities=19% Similarity=0.120 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 009143 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (542)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 236 (542)
..+-..+...|+-+....+........+ .|....+.++....+.|++.+|...+++.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 4444555556666666555555443322 34455555666666667777777777666554 345666666666667777
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009143 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (542)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 316 (542)
|++++|..-|.+.++..+ .+....+.+.-.+.-.|+.+.|..++......+ ..|...-..|.-.....|++++|.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~----~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELAP----NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhcc----CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHH
Confidence 777777777766666555 555666666666666677777766666666553 335556666666666666666666
Q ss_pred HHHHH
Q 009143 317 AYFCQ 321 (542)
Q Consensus 317 ~~~~~ 321 (542)
++-..
T Consensus 223 ~i~~~ 227 (257)
T COG5010 223 DIAVQ 227 (257)
T ss_pred hhccc
Confidence 65544
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=5.3e-05 Score=65.65 Aligned_cols=139 Identities=17% Similarity=0.093 Sum_probs=71.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 009143 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK---- 343 (542)
Q Consensus 268 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 343 (542)
...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+- .+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555555555555554411 1222222223344555566666666666553 244455555555443
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 009143 344 QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDL 417 (542)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 417 (542)
.++..+|.-+|++|.+. .+|+..+.+-...++...|++++|..+++..+.+... ++.+...++..-...|..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 23456666666666543 3456666666666666666666666666666665554 455544444444444433
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=4.5e-05 Score=78.55 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=151.2
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (542)
+.....+++.-+....+. .+.+...+..|.....+.|.+++|..+++.+.+..+ .+......++..+.+.+++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P----d~~~a~~~~a~~L~~~~~~ee 138 (694)
T PRK15179 64 AVHKPAAALPELLDYVRR-YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP----DSSEAFILMLRGVKRQQGIEA 138 (694)
T ss_pred hhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHhccHHH
Confidence 333334443333333332 455788999999999999999999999999999887 888999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 280 ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
|+...++..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|+...+
T Consensus 139 A~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 139 GRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999886 6677888889999999999999999999999843 34578899999999999999999999999887
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc
Q 009143 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS----VVPEPHIWNVIIDGYGRC 414 (542)
Q Consensus 360 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 414 (542)
.. .+....|+..+ ++...-...++++.-.+ .........-.+.-|.+.
T Consensus 217 ~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 217 AI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred hh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 52 34555555554 34445555666654332 222334455555555543
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=5.6e-05 Score=77.86 Aligned_cols=214 Identities=11% Similarity=0.009 Sum_probs=157.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhh--CCCCCCHHhHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTAL-WLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSE--MRPSPNCATYNA 193 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~ 193 (542)
++.....+=.++..-|..++|- +++.++ =+...+.|.+..+.+.+-++.. .....+...+-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQA---------------RQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHH---------------HHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 4444444444555667666663 233322 1223334444444333333321 123356889999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (542)
|.....+.|+.++|..+++...+. .|+ ......++..+.+.+++++|....++.+...+ .+......+..++.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p----~~~~~~~~~a~~l~ 165 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS----SSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHH
Confidence 999999999999999999999885 454 56777889999999999999999999999887 88999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009143 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352 (542)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (542)
+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.. .|....|+..+. ++..-..
T Consensus 166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~ 237 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLA 237 (694)
T ss_pred HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHH
Confidence 9999999999999999854 5568899999999999999999999999998863 556666665543 3333444
Q ss_pred HHHHHHH
Q 009143 353 FYGVLSK 359 (542)
Q Consensus 353 ~~~~~~~ 359 (542)
+++.+.-
T Consensus 238 ~~~~~~~ 244 (694)
T PRK15179 238 ALRRLGV 244 (694)
T ss_pred HHHHcCc
Confidence 5555443
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=1.6e-05 Score=65.14 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=46.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (542)
+...+...|++++|...|+.++...+ .+..+|..+...+.+.|++++|...|+.....+ +.+...+..+..++..
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQP----WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 34444455555555555555554444 444555555555555555555555555555443 3444445555555555
Q ss_pred CCCHHHHHHHHHHHHHc
Q 009143 309 NGDISSAFAYFCQMLKR 325 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~~~ 325 (542)
.|++++|+..|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=1.5e-05 Score=65.32 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=40.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 238 (542)
+...+...|++++|...|+......| .+...|..+..++.+.|++++|...|++..... +.+..++..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 33344444444444444444444333 234444444444444444444444444444331 2233444444444444444
Q ss_pred hhHHHHHHHHHHhCC
Q 009143 239 LGDAVKFLGEVLADD 253 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~ 253 (542)
.++|...++..+...
T Consensus 108 ~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 108 PGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHhC
Confidence 444444444444433
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00017 Score=62.08 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=137.2
Q ss_pred cCChHHHHHHHHHHHhC---C-CCCChhh-HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChh
Q 009143 131 GGKIGTALWLRRKMIQK---G-TVPDVLT-HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (542)
Q Consensus 131 ~g~~~~A~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (542)
..+.++.++++..++.. | ..|+.++ |..++-+....|+.+.|...++.+...-|. +...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 35566677777666542 3 4455543 455666677889999999999998776543 2222222222344578999
Q ss_pred hHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (542)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 285 (542)
+|.++++.+.+.. +.|.+++-.-+.+.-..|+.-+|++-+.+.++.-. .|..+|.-+...|...|++++|.-.++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~----~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM----NDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999998875 55677787777777788888899999998888665 889999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHc
Q 009143 286 DMFQKNIQTDIVAYNVLINGFCLNG---DISSAFAYFCQMLKR 325 (542)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~ 325 (542)
++.-.. |.++..+..+...+.-.| +.+.+.++|.+..+.
T Consensus 179 E~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 988765 566666666766655544 556678888887765
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00017 Score=68.07 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=60.9
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
...|.+++|+..++.+... .+-|+.........+.+.++.++|.+.+++++...+ ........+.+++.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P----~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDP----NSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CccHHHHHHHHHHHhcCChH
Confidence 3455555555555555443 222333333444555555555555555555555444 33445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQM 322 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 322 (542)
+|.+.++...... +.|+..|..|..+|...|+..++..-..+.
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 5555555555443 445555555555555555555555444443
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00028 Score=66.69 Aligned_cols=240 Identities=13% Similarity=0.073 Sum_probs=166.3
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC--CCCCHHhHHHHHHHH
Q 009143 125 IRDLCLGGKI-GTALWLRRKMIQ---KGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR--PSPNCATYNAFITGY 198 (542)
Q Consensus 125 i~~~~~~g~~-~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~ 198 (542)
|..+.+.|.- ....++|+++.. .+-.|+....+ .=.-..+..++...-+.+...+ ..|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~T----HPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLT----HPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhc----CCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 4555677754 444588888873 34444433211 1111234444444444443211 235555666666655
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
.....-..+..++.+-.+. .-...-|. ..-.+...|++++|+..++.++...+ .|+..+....+.+.+.++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~~P----~N~~~~~~~~~i~~~~nk~~ 357 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAAQP----DNPYYLELAGDILLEANKAK 357 (484)
T ss_pred hccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChH
Confidence 5444444444444333331 11222333 33446688999999999999999777 89999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
+|.+.++.+.... +......-.+..++.+.|++.+|+.+++...... +-|+..|..|..+|...|+..++.....+..
T Consensus 358 ~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 358 EAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999884 2336677788899999999999999999988774 6688999999999999999999998887776
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
... |++++|...+....+.
T Consensus 436 ~~~------------------G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 ALA------------------GRLEQAIIFLMRASQQ 454 (484)
T ss_pred HhC------------------CCHHHHHHHHHHHHHh
Confidence 542 7777888777777664
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=2.6e-05 Score=63.50 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009143 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCL 341 (542)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 341 (542)
.....+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333344444444444444444444444332 2334444444444444444444444444443332 22333333344444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009143 342 CKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~ 359 (542)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00047 Score=59.50 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=122.2
Q ss_pred cCChhhHHHHHHHHHHC---C-CCCChH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC
Q 009143 201 VNELDKALHLFSTMANN---G-IRPNRV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (542)
..+.++.++++..+... | ..++.. .|..++-+....|+.+.|...++++...-+ .+..+--.-...+-..|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp----~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP----GSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHhh
Confidence 34566666666666432 3 444543 344555666677888888888888777654 33333333333445567
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (542)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (542)
++++|.++++.+++.+ +.|..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 7888888888887776 666667766666666677777777777777766 46677888888888888888888888887
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Q 009143 356 VLSKTGVAPDQISYKTIIQGLCIHG---DIVKAREFLLSMLEKSV 397 (542)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~ 397 (542)
++.-.. |.++..+..+.+.+...| +.+-|.+.+.+.++...
T Consensus 179 E~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 179 ELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 777642 334445555555544333 45567777777777543
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=3.2e-05 Score=62.91 Aligned_cols=95 Identities=15% Similarity=0.027 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (542)
...+...+...|++++|.+.++.+...++ .+...+..+...+.+.|++++|...++...+.+ +.+...+..+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP----YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 33444445555555555555555555443 444555555555555555555555555554443 3344555555555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009143 306 FCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 306 ~~~~~~~~~A~~~~~~~~~~ 325 (542)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=4.7e-05 Score=62.64 Aligned_cols=130 Identities=22% Similarity=0.236 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 009143 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDI--ITYT 480 (542)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~ 480 (542)
.|..++..+ ..++...+...++.+.+....-.......+..+ ..+...|++++|...|+........|+. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA---~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLA---KAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 344455544 367777777777777774211111122222222 2256678888888888888876423322 3444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 009143 481 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 538 (542)
.|...+...|++++|...++..... ......+....+.|.+.|++++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5778888899999999988764433 2355667788888999999999999988764
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=0.00013 Score=69.59 Aligned_cols=124 Identities=13% Similarity=0.189 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Q 009143 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (542)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (542)
...|+..+...++++.|+++++++.+.. |+ ....+++.+...++..+|.+++.+.+...+ .+......-.+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----~d~~LL~~Qa~f 243 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP----QDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----CCHHHHHHHHHH
Confidence 3445555666677777777777777653 43 334466666677777777777777776555 566666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
+.+.++++.|+++.+++.+.. |.+..+|..|..+|...|+++.|+-.+..+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777664 4445577777777777777777777776554
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.014 Score=59.62 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=151.8
Q ss_pred hHHHHHHHH-HHhhHHHHHHHHhhCCCCCCCCCChhhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009143 85 AVFNALDLI-LKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRD--LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVN 161 (542)
Q Consensus 85 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 161 (542)
+++..++.- .+..+.....+.+.. ||.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~-------Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~ 85 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKH-------PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQN 85 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHC-------CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHH
Confidence 444444332 244455555555554 3332 3334444 46889999999888887766544 7888999999
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC----
Q 009143 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG---- 237 (542)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---- 237 (542)
.|...|+.++|..+|++..... |+......+..+|.+.+.+.+-.+.--+|.+. ++-+...+=++++...+.-
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCc
Confidence 9999999999999999998765 45777777888899988877655555555442 3345555556666555432
Q ss_pred ------ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 238 ------LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW-NDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 238 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
-..-|.+.++.+++.+. .. ....-.......+-..|++++|.+++ ....+.-...+...-+.-+..+...+
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~g-k~-~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKG-KI-ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCC-cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 12346777777777662 11 22222333344556678899999998 44444433445555566778888899
Q ss_pred CHHHHHHHHHHHHHcC
Q 009143 311 DISSAFAYFCQMLKRG 326 (542)
Q Consensus 311 ~~~~A~~~~~~~~~~~ 326 (542)
++.+..++-.++...|
T Consensus 241 ~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKG 256 (932)
T ss_pred ChHHHHHHHHHHHHhC
Confidence 9999999999999885
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.0098 Score=57.26 Aligned_cols=61 Identities=8% Similarity=0.013 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009143 97 NLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVN 161 (542)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 161 (542)
..+.++...+.+.. .++..+..|..-|..-.+.++++....+|.+.+..- .+...|..-++
T Consensus 34 ~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 34 PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 44555555554431 122344566777777777777777777777665542 23444544444
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00018 Score=59.12 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=8.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009143 269 DSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~ 289 (542)
..+...|++++|...|+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333444444444444444433
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.1e-06 Score=48.84 Aligned_cols=33 Identities=42% Similarity=0.919 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCC
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPN 222 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 222 (542)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=7.7e-06 Score=48.39 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD 152 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 152 (542)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888887777776
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00022 Score=67.97 Aligned_cols=123 Identities=19% Similarity=0.142 Sum_probs=90.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 009143 158 YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG 237 (542)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 237 (542)
.|+..+...++++.|.++|+++.+.. |++ ...++..+...++-.+|.+++.+..+. .+.+...+......+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34455556678888888888887654 333 334677777777778888888887764 2335666666677778888
Q ss_pred ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 238 LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
+.+.|+++.+++....| .+-.+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~lsP----~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP----SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888776 7777888888888888888888888887763
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00065 Score=62.76 Aligned_cols=296 Identities=15% Similarity=0.089 Sum_probs=149.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (542)
....+.+..++.+|+..+....+.. +-+..-|..-+..+...|+++++.--.+.-++..+ .......-..+++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd----~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD----GFSKGQLREGQCHLA 129 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC----Cccccccchhhhhhh
Confidence 3344445555555555555555543 22333444444445555555555544444444333 222233333334444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHH-HHHHhcCCHHHHH
Q 009143 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF-LPDVITYNTLL-NCLCKQGKLDEAS 351 (542)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~li-~~~~~~g~~~~A~ 351 (542)
.++..+|.+.++ +...| ....++..++....... +|.-.++..+- .++.-.|+.++|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444443333 00000 11122222332222221 23334444433 3556678999998
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHH----------HHhcCC
Q 009143 352 HFYGVLSKTGVAPDQISYKTIIQGL--CIHGDIVKAREFLLSMLEKSVVPEPHIWNV---IIDG----------YGRCGD 416 (542)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---li~~----------~~~~g~ 416 (542)
+.-..+.+.. ....+...+++. .-.++.+.|...|.+.+..++ +...-.. .... ..+.|+
T Consensus 190 ~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 190 SEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 8887777753 223444445443 346788999999999887653 3322211 1222 235678
Q ss_pred hHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 009143 417 LSNAFSIRDLMLSFG---VSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNM 492 (542)
Q Consensus 417 ~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~ 492 (542)
+..|.+.|.+.+... ..|+...|...-.+ ..+.|+.++|+.-.++..+. .|.. ..|..-..++...++|
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v-----~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALV-----NIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhh-----hcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877631 22333333333333 56778888888887777753 2211 2333333455567778
Q ss_pred HHHHHHHHHHhHcCCC-CChhHHHHHHHHHHhcCC
Q 009143 493 KEAEEVFAKIQTLGLA-IDHIPFRILKKRYRRMKE 526 (542)
Q Consensus 493 ~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~ 526 (542)
++|.+-+++..+.... -...++.....++.++.+
T Consensus 338 e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 8888888777664222 123444444444544443
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.2e-05 Score=47.23 Aligned_cols=33 Identities=36% Similarity=0.739 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCC
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRP 221 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 221 (542)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.4e-05 Score=46.94 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009143 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP 151 (542)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 151 (542)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888887777766
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.91 E-value=0.00055 Score=54.09 Aligned_cols=22 Identities=32% Similarity=0.304 Sum_probs=8.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 009143 229 LVHALCKKGLLGDAVKFLGEVL 250 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~ 250 (542)
+..++.+.|+++.|.+.++.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3333333334444444433333
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.0006 Score=53.84 Aligned_cols=99 Identities=21% Similarity=0.113 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI--QTDIVAYNVLI 303 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li 303 (542)
+..++..+.+.|++++|.+.+.+++...+ ..+.....+..+...+.+.|+++.|...|+.+..... +....++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445555555666666666666555433 1111233444555556666666666666665554321 11133455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009143 304 NGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555556666666666555554
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.85 E-value=0.00035 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=7.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 009143 267 LMDSYFKNGDKFQALALWNDM 287 (542)
Q Consensus 267 l~~~~~~~g~~~~a~~~~~~~ 287 (542)
+...+...|++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.85 E-value=0.00035 Score=66.97 Aligned_cols=124 Identities=12% Similarity=0.142 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 009143 291 NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR--GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQIS 368 (542)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 368 (542)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+++..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667777788888887778888888888877765 2222344556888888888888888888888788888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009143 369 YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (542)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (542)
++.|++.+.+.|++..|.++...|...+...++.|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666667766666665554
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00041 Score=66.53 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=83.6
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009143 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (542)
Q Consensus 219 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 298 (542)
.+.+......+++.+....+++.+..++-+...... ....-..+..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~-~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPN-CSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcc-cccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344556666666666666667777777776665432 1112233445777777777777777777777777777778778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009143 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (542)
Q Consensus 299 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 344 (542)
++.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888887777788777777777777666555666666555555554
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.0057 Score=54.96 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTH---NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
.+-.....+.+.|++++|+..|+.+...-.. +.... -.++.++.+.+++++|...+++..+..|......|...+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3334455556778888888888888775222 12222 3456667778888888888888777665433344444444
Q ss_pred HH
Q 009143 197 GY 198 (542)
Q Consensus 197 ~~ 198 (542)
+.
T Consensus 113 g~ 114 (243)
T PRK10866 113 GL 114 (243)
T ss_pred HH
Confidence 43
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.013 Score=54.51 Aligned_cols=227 Identities=15% Similarity=0.057 Sum_probs=114.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCCh
Q 009143 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (542)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (542)
...+.+..++..|+..+...++... .+...|..-...+...|++++|.--.+.-.+..+. ....+.-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 3456677788888888888888743 34556666666677777777775544444332211 111222222333333333
Q ss_pred hhHHHHHH---------------HHHHCCC-CCChHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHH
Q 009143 205 DKALHLFS---------------TMANNGI-RPNRVTHNILV-HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (542)
Q Consensus 205 ~~A~~~~~---------------~m~~~g~-~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (542)
.+|.+.++ ....... +|.-.++..+- ..+.-.|+.++|.++-..+++.+. .+......-
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~----~n~~al~vr 209 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA----TNAEALYVR 209 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc----chhHHHHhc
Confidence 33333332 1111111 12223333222 334456777777777777776655 444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCH
Q 009143 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN-------------VLINGFCLNGDISSAFAYFCQMLKRG---FLPDV 331 (542)
Q Consensus 268 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~~~~~~A~~~~~~~~~~~---~~p~~ 331 (542)
..++.-.++.+.+...|++.+..+ |+...-. .-.+-..+.|++..|.+.|.+.+... ..|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 445555667777777777776553 3322211 11122344555555555555554331 22333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 332 ITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
..|.....+..+.|+.++|+.-.+...+
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 4444444455555555555555555444
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00088 Score=64.16 Aligned_cols=88 Identities=14% Similarity=-0.036 Sum_probs=43.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 312 (542)
+...|++++|++.+++++...+ .+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3344555555555555554444 444445555555555555555555555554443 23444444555555555555
Q ss_pred HHHHHHHHHHHHc
Q 009143 313 SSAFAYFCQMLKR 325 (542)
Q Consensus 313 ~~A~~~~~~~~~~ 325 (542)
++|+..|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=4.5e-05 Score=55.98 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHH
Q 009143 454 LGHIHLALQLYDEMLRRGI-TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARD 532 (542)
Q Consensus 454 ~g~~~~A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 532 (542)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|..++++ .+.+.. +......+..+|...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4789999999999998532 22455666689999999999999999988 333222 33444466888999999999999
Q ss_pred HHHHH
Q 009143 533 IHQKW 537 (542)
Q Consensus 533 ~~~~~ 537 (542)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99874
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00065 Score=50.75 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 009143 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (542)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 236 (542)
..+...+...|++++|.+.++++.+..+. +...+..+...+...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444444555555555555555443321 22344444444444455555555554444432 11223344444444444
Q ss_pred CChhHHHHHHHHHH
Q 009143 237 GLLGDAVKFLGEVL 250 (542)
Q Consensus 237 g~~~~a~~~~~~~~ 250 (542)
|+.+.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 44444444444443
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.0087 Score=55.48 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHH
Q 009143 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN-GDISSAFAYFCQMLKR----GFLPD--VITYNTLLNC 340 (542)
Q Consensus 268 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~ 340 (542)
+..|...|++..|-+.+..+- ..|-.. |++++|++.|++..+. | .+. ...+..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 344555555555555444433 345455 6777777777765532 2 111 2345566667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C--CCHHHHHHHHHH
Q 009143 341 LCKQGKLDEASHFYGVLSKTGVAPD-----QI-SYKTIIQGLCIHGDIVKAREFLLSMLEKSV--V--PEPHIWNVIIDG 410 (542)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~--~~~~~~~~li~~ 410 (542)
+.+.|++++|.++|+++.......+ .. .+-..+-.+...||...|.+.+++.....+ . ........|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 7777888888888877765432211 11 112222344456777788888877765532 1 112345556666
Q ss_pred HHh--cCChHHHHHHHHHHH
Q 009143 411 YGR--CGDLSNAFSIRDLML 428 (542)
Q Consensus 411 ~~~--~g~~~~A~~~~~~m~ 428 (542)
+-. ...++.++.-|+.+.
T Consensus 245 ~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS
T ss_pred HHhCCHHHHHHHHHHHcccC
Confidence 543 234555555555444
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.70 E-value=0.0015 Score=52.87 Aligned_cols=90 Identities=9% Similarity=-0.057 Sum_probs=45.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 009143 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (542)
Q Consensus 230 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (542)
...+...|++++|.++|+-+...++ .+...|..|.-++-..|++++|+..|......+ +.|+..+-.+..++...
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp----~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDA----WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3334455555555555555555444 444555555555555555555555555555444 34444555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 009143 310 GDISSAFAYFCQMLK 324 (542)
Q Consensus 310 ~~~~~A~~~~~~~~~ 324 (542)
|+.+.|.+-|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.0013 Score=55.79 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 227 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
..+...+...|++++|...+++.+...+ .......++..+...+...|++++|...++....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444444444444444444443322 1001123444444444444444444444444443
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=6.2e-05 Score=42.95 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG 148 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 148 (542)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.00071 Score=62.40 Aligned_cols=130 Identities=14% Similarity=0.098 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG-YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 446 (542)
+|..++...-+.+..+.|..+|.+..+.+. .+...|-..... |...++.+.|.++|+...+. +..+...|...+.-
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~- 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF- 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH-
Confidence 456666666666666777777777664322 133344433333 22245555577777666653 22333444444433
Q ss_pred hcccccccCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 447 TRGASCNLGHIHLALQLYDEMLRRGITPDI---ITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 447 ~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
+.+.|+.+.|..+|++.... +.++. ..|...++-=.+.|+.+.+..+.+++.+.
T Consensus 80 ----l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 ----LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp ----HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred ----HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666666654 22221 35666666666666666666666666664
No 162
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0068 Score=52.79 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHH-----H
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL-----V 230 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-----~ 230 (542)
.+.++..+.-.|.+.-...++.++.+..++.+......|++.-.+.|+.+.|...|++..+..-+.|..+++.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34555666666777777888888887776677777778888888888888888888877654333333333333 3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
..|.-++++..|...+.+++..++ .++...|.-.-+..-.|+..+|++..+.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~----~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDP----RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCC----CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344456677777777777777766 66666666666666677777777777777765
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.9e-05 Score=43.04 Aligned_cols=29 Identities=45% Similarity=0.798 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHcC
Q 009143 478 TYTELIKGHCARGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (542)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 164
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.65 E-value=0.00029 Score=49.32 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHhhcC
Q 009143 475 DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK-ESDKARDIHQKWLLRN 541 (542)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~ 541 (542)
++..|..+...+...|++++|+..|++..+... .+...|..+..++...| ++++|.+.++++++.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 567889999999999999999999999999753 37788899999999999 7999999999998876
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.014 Score=52.37 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 371 TIIQGLCIHGDIVKAREFLLSMLEKSV--VPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
.+...|.+.|.+..|..-++.+++.-+ +........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455567778888888888888876522 2234556677778888888888877665543
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.0013 Score=49.38 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQKNI-QTDIVAYNVLINGFCLNG--------DISSAFAYFCQMLKRGFLPDVITYN 335 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~~~~~~~~p~~~~~~ 335 (542)
...+..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555555666666667777766666 666777776666655542 2234555566666666666666666
Q ss_pred HHHHHHH
Q 009143 336 TLLNCLC 342 (542)
Q Consensus 336 ~li~~~~ 342 (542)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665544
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.00093 Score=50.06 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhcccc---cccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009143 415 GDLSNAFSIRDLMLSFGV-SSNVFTFNALILAETRGAS---CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 487 (542)
Q Consensus 415 g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 487 (542)
+++.....+|+.+++.|+ .|+..+|+.++.+.+.... .-.+++-..+.+++.|+..+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 4444444444444221100 000123334455555555555555555555555443
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0044 Score=52.69 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=51.7
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (542)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+.+...+ .+...+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~ 111 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----KQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHH
Confidence 3455555556666666666666666654322211 24555666666666777777776666666554 45555666
Q ss_pred HHHHHHhcCCHHHHH
Q 009143 267 LMDSYFKNGDKFQAL 281 (542)
Q Consensus 267 l~~~~~~~g~~~~a~ 281 (542)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666666666544443
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.0057 Score=49.62 Aligned_cols=90 Identities=12% Similarity=0.032 Sum_probs=43.7
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc
Q 009143 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (542)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (542)
...+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|+..+......++ .+...+-.+..++...
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~----ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI----DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHc
Confidence 333444555555555555544432 11233344444444455555555555555555444 4445555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 009143 275 GDKFQALALWNDMFQ 289 (542)
Q Consensus 275 g~~~~a~~~~~~~~~ 289 (542)
|+.+.|.+.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00016 Score=53.00 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHHcCChhhHHHHHHH
Q 009143 167 GDLEKADHVIREMSEMRPS-PNCATYNAFITGYCRVNELDKALHLFST 213 (542)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (542)
|+++.|+.+++++.+..+. ++...+-.+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444443321 1222223334444444444444444444
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0076 Score=60.48 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC--------CHHHHHHHHH
Q 009143 219 IRPNRVTHNILVHALCKK-----GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG--------DKFQALALWN 285 (542)
Q Consensus 219 ~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~ 285 (542)
.+.+...|...+++.... ++...|..+|+++++.++ .....|..+..++.... +...+.+..+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP----~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP----DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345556666666554432 225567777777777665 45555554444332211 1122222222
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 286 DMFQK-NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 286 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
+.... ..+.+...|..+.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|...+.+...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22221 11233344444444444445555555555555544 23444555555555555555555555555444
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0051 Score=52.26 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009143 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302 (542)
Q Consensus 223 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (542)
...+..+...+...|++++|...+++.++..+.. ......+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3456777778888899999999998888765411 1124678888888888888888888888888764 3456667777
Q ss_pred HHHHHhCCCHHHHHH
Q 009143 303 INGFCLNGDISSAFA 317 (542)
Q Consensus 303 i~~~~~~~~~~~A~~ 317 (542)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776544443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0094 Score=55.27 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCC----
Q 009143 404 WNVIIDGYGRC-GDLSNAFSIRDLMLSFG-VSSNVF----TFNALILAETRGASCNLGHIHLALQLYDEMLRRGIT---- 473 (542)
Q Consensus 404 ~~~li~~~~~~-g~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~---- 473 (542)
+..+...|... |++++|.+.|++..+.- ...... .+..+... +.+.|++++|.++|++.......
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l-----~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL-----YARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----HHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 33444455555 67777777776665410 000111 12222222 55666777777777666653221
Q ss_pred -CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 474 -PDI-ITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 474 -p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
++. ..|...+-++...|++..|.+.+++...
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 1222333344556666666666666655
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0049 Score=55.21 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=60.2
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCC
Q 009143 177 REMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG---LLGDAVKFLGEVLADD 253 (542)
Q Consensus 177 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 253 (542)
+.-+..+| -|...|-.|..+|...|+++.|..-|.+..+. -.++...+..+..++.... ...++.++|++++..+
T Consensus 146 e~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 33333444 35666666666666666666666666666554 1234444444444443321 2345566666666655
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 254 DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
+ .++.+...|...+...|++.+|...|+.|.+.
T Consensus 224 ~----~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 224 P----ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred C----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5 55666666666666666666666666666655
No 175
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.071 Score=49.47 Aligned_cols=250 Identities=18% Similarity=0.122 Sum_probs=110.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
.|+++.|.+-|+.|+.... .-..-...|.-..-+.|+.+.|..+-++....- +.-...+...+...|..|+++.|
T Consensus 133 eG~~~~Ar~kfeAMl~dPE----tRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPE----TRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred cCchHHHHHHHHHHhcChH----HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 4555555555555543211 111111222222234455555555555554432 22334455555556666666666
Q ss_pred HHHHHHHHHcC-CCCCHHH--HHHHHHHHH--h-cCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHH
Q 009143 316 FAYFCQMLKRG-FLPDVIT--YNTLLNCLC--K-QGKLDEASHFYGVLSKTGVAPDQIS-YKTIIQGLCIHGDIVKAREF 388 (542)
Q Consensus 316 ~~~~~~~~~~~-~~p~~~~--~~~li~~~~--~-~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~ 388 (542)
+++++.-.... +.++..- -..|+.+-. . .-+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 66655544322 2222211 111221111 0 1133344443333333 3344321 22233456666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHH-HHHHHHHhhcccccccCChHHHHHHHHH
Q 009143 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS-FGVSSNVFT-FNALILAETRGASCNLGHIHLALQLYDE 466 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~-~~~ll~~~~~~~~~~~g~~~~A~~~~~~ 466 (542)
++.+-+..+.|+.. .+..+.+.|+. +..-+++... ..++||... ...+..+ -...|++..|..--+.
T Consensus 286 lE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~a-----Alda~e~~~ARa~Aea 354 (531)
T COG3898 286 LETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEA-----ALDAGEFSAARAKAEA 354 (531)
T ss_pred HHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHH-----HHhccchHHHHHHHHH
Confidence 66666655444322 11122333432 2222333222 123444322 2222222 2334666666555554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhHc
Q 009143 467 MLRRGITPDIITYTELIKGHCA-RGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 467 ~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 505 (542)
..+. .|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 355 a~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 355 AARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Hhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4443 5666666666665544 36666666666666553
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0021 Score=54.45 Aligned_cols=81 Identities=12% Similarity=-0.025 Sum_probs=47.8
Q ss_pred HHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHH
Q 009143 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRP--NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (542)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
...|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.+++.+...+ .....+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~----~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP----FLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHH
Confidence 3445555566666677777777766665442111 123566666677777777777777777766544 3444555
Q ss_pred HHHHHHH
Q 009143 266 ILMDSYF 272 (542)
Q Consensus 266 ~l~~~~~ 272 (542)
.+...+.
T Consensus 111 ~la~i~~ 117 (168)
T CHL00033 111 NMAVICH 117 (168)
T ss_pred HHHHHHH
Confidence 5555555
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.54 E-value=0.0036 Score=60.03 Aligned_cols=92 Identities=12% Similarity=-0.015 Sum_probs=50.7
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 009143 161 NELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG 240 (542)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 240 (542)
..+...|++++|++.|+++++..+. +...|..+..+|.+.|++++|+..++++.... +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3444556666666666666555442 44555555555556666666666666555542 223445555555555556666
Q ss_pred HHHHHHHHHHhCCC
Q 009143 241 DAVKFLGEVLADDD 254 (542)
Q Consensus 241 ~a~~~~~~~~~~~~ 254 (542)
+|...|++.+..++
T Consensus 88 eA~~~~~~al~l~P 101 (356)
T PLN03088 88 TAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHhCC
Confidence 66666655555544
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.12 Score=51.69 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=64.7
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC-CCCC--------CHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCC
Q 009143 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEM-RPSP--------NCATYNAFITGYCRVNELDKALHLFSTMANNGIR 220 (542)
Q Consensus 150 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (542)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|++++|.++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 577888888888877777788887777665431 1110 00011111222 2478888888887765542
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 221 PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (542)
Q Consensus 221 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 286 (542)
..+..+.+.|++-...++++.--.... ...-..+|+.+...+.....+++|.+.+..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~d--D~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDD--DEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 133444555665555554432111100 001224555555555555555555555543
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.006 Score=47.61 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=45.3
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPN--RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (542)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....+ ..+.+......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHH
Confidence 344455666666666666655554432 23444455555556666666666665555433 100122222333344555
Q ss_pred cCCHHHHHHHHHHHH
Q 009143 274 NGDKFQALALWNDMF 288 (542)
Q Consensus 274 ~g~~~~a~~~~~~~~ 288 (542)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555554443
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0031 Score=58.22 Aligned_cols=130 Identities=15% Similarity=0.029 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK-KGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (542)
+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...+..-.. .++.+.|.++|+..++.-+ .+...|...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~----~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP----SDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT----T-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC----CCHHHHHHHH
Confidence 34455555555555555555555554321 1223333333333222 3334445555555555433 4455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDI---VAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+.+.+.++.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555443 11111 24555555555555555555555554443
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0017 Score=57.80 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=51.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009143 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS 313 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 313 (542)
.+.+++.+|+..|.++++..+ .+.+.|..-..+|++.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P----~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDP----TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 345555555555555555554 555555555555555555555555555555443 333455555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH
Q 009143 314 SAFAYFCQMLKRGFLPDVITYN 335 (542)
Q Consensus 314 ~A~~~~~~~~~~~~~p~~~~~~ 335 (542)
+|++.|++.++. .|+..+|-
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHH
Confidence 555555555543 44444443
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.042 Score=45.42 Aligned_cols=103 Identities=8% Similarity=0.037 Sum_probs=48.2
Q ss_pred CCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHH
Q 009143 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (542)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
|++..--.|..++.+.|+..+|...|++...--+-.|......+.++....+++..|...++++.+..+.. .......
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~--r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF--RSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc--CCCCchH
Confidence 34443444455555555555555555554432233344444455555555555555555555555444322 2222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 266 ILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 266 ~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.+.+.+...|.+.+|...|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3444444445555555555444443
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.002 Score=57.30 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=58.5
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCH
Q 009143 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (542)
..+.+++++|++.|.+.++.. +-|.+-|..-..+|++.|.++.|.+-.+..+..++ ....+|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp----~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP----HYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccCcH
Confidence 445566666666666666542 22455556666666666666666666666666665 5566666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 009143 278 FQALALWNDMFQKNIQTDIVAY 299 (542)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~ 299 (542)
++|.+.|++.++. .|+-.+|
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHH
Confidence 6666666666654 3444443
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.044 Score=45.34 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=72.7
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-CCChHHHHH
Q 009143 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGI-RPNRVTHNI 228 (542)
Q Consensus 150 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ 228 (542)
.|++.....|..++...|+..+|...|++....-..-|....-.+.++....+++..|...++.+-+... .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4566666666666666777777777766665543344555555566666666677777776666655420 011233444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 282 (542)
+.+.+...|+..+|+.-|+..+.-.+ +...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~yp-----g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYP-----GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhcchhHHHH
Confidence 55666666777777777766666543 22333333445555665555443
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.013 Score=51.33 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGT--VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
.-.....+.+.|++.+|+..|+.+...-. +--......++.++.+.|+++.|...++++.+..|......+...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 34445566677888888888888887521 11234455677778888888888888888777655433333333333
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.43 E-value=0.12 Score=49.02 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=70.0
Q ss_pred HHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 009143 103 TMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM 182 (542)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 182 (542)
++++.+. .-+.|..+|-.||.-+..+|..++..+++++|..- .+--..+|..-+.+-...+++.....+|.+.+..
T Consensus 30 rLRerIk---dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIK---DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhh---cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 4555554 33467889999999999999999999999999763 3334557777777777788999999999998875
Q ss_pred CCCCCHHhHHHHHHHHHHcC
Q 009143 183 RPSPNCATYNAFITGYCRVN 202 (542)
Q Consensus 183 ~~~~~~~~~~~li~~~~~~g 202 (542)
.. +...|...+..--+.+
T Consensus 106 ~l--~ldLW~lYl~YIRr~n 123 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVN 123 (660)
T ss_pred hc--cHhHHHHHHHHHHhhC
Confidence 43 5677777777554443
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.42 E-value=0.2 Score=51.68 Aligned_cols=398 Identities=14% Similarity=0.097 Sum_probs=213.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
|..|...+-..|.+.|+.++|..+|++..+. .|+......+..+|.+.+++.+-.++--++.+.-|+ +...|=++++
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~S 152 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVIS 152 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHH
Confidence 7778999999999999999999999999975 577777888888999988887665555555554343 4455555566
Q ss_pred HHHHcC-Ch---------hhHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHH
Q 009143 197 GYCRVN-EL---------DKALHLFSTMANNG-IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (542)
Q Consensus 197 ~~~~~g-~~---------~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
.+.+.- .. .-|...++.+.+.+ -.-+..-...-...+...|.+++|..++..-....... .+...-+
T Consensus 153 lilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~--~~~~l~~ 230 (932)
T KOG2053|consen 153 LILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS--ANLYLEN 230 (932)
T ss_pred HHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc--cchHHHH
Confidence 555532 12 23555666665543 22222223334455667899999999994333322212 4555556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------------hCCCHHHHHHHHHHHHHcCCCC
Q 009143 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC----------------LNGDISSAFAYFCQMLKRGFLP 329 (542)
Q Consensus 266 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----------------~~~~~~~A~~~~~~~~~~~~~p 329 (542)
.-++.+...+++.+..++-.++...| ..| |...++.++ ..+..+...+...+.....
T Consensus 231 ~~~dllk~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~--- 303 (932)
T KOG2053|consen 231 KKLDLLKLLNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK--- 303 (932)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---
Confidence 77888999999999999999999886 223 322222111 1122222222222222211
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CH---
Q 009143 330 DVITYNTLLNCLC---KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP--EP--- 401 (542)
Q Consensus 330 ~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--- 401 (542)
....|-+-+.+.. .-|+.+++...|-+ +-|-.| .|..=+..|...=..++-..++.......... |.
T Consensus 304 ~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l 378 (932)
T KOG2053|consen 304 SRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVL 378 (932)
T ss_pred ccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHH
Confidence 1223434444443 34777776554432 222222 22222333333223333333333333221100 00
Q ss_pred HHHHHHHHHHHhcCC-----hHHHHHHHHHHH---hC------CCCCCHHH---------HHHHHHHhhcccccccCChH
Q 009143 402 HIWNVIIDGYGRCGD-----LSNAFSIRDLML---SF------GVSSNVFT---------FNALILAETRGASCNLGHIH 458 (542)
Q Consensus 402 ~~~~~li~~~~~~g~-----~~~A~~~~~~m~---~~------~~~p~~~~---------~~~ll~~~~~~~~~~~g~~~ 458 (542)
..+...+....-.|. .+.-..++.+.. +. ++-|+..+ .+.++.. +.+.++..
T Consensus 379 ~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~-----~rktnd~~ 453 (932)
T KOG2053|consen 379 QQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL-----WRKTNDLT 453 (932)
T ss_pred HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH-----HHhcCcHH
Confidence 001122222222221 122222232211 11 23334332 2334443 44555544
Q ss_pred ---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 009143 459 ---LALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQ 535 (542)
Q Consensus 459 ---~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (542)
+|+-+++.-.... +.|..+-..+|+.|+-.|-+..|.++++.+.-..+.-|..-| .+..-+...|++..+...++
T Consensus 454 ~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~ 531 (932)
T KOG2053|consen 454 DLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFN 531 (932)
T ss_pred HHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHH
Confidence 4555555444432 234555667889999999999999999888665565554443 23345556677777776666
Q ss_pred HHh
Q 009143 536 KWL 538 (542)
Q Consensus 536 ~~l 538 (542)
..+
T Consensus 532 ~~l 534 (932)
T KOG2053|consen 532 EHL 534 (932)
T ss_pred HHH
Confidence 554
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.012 Score=59.10 Aligned_cols=145 Identities=17% Similarity=0.114 Sum_probs=104.0
Q ss_pred CCCCCHHhHHHHHHHHHHcC-----ChhhHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcC--------ChhHHHHHHHH
Q 009143 183 RPSPNCATYNAFITGYCRVN-----ELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKG--------LLGDAVKFLGE 248 (542)
Q Consensus 183 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g--------~~~~a~~~~~~ 248 (542)
.++.+...|...+++..... ....|.++|++..+. .|+ ...|..+..++.... ++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34568889999988865432 367999999999885 455 345554444333221 22344444444
Q ss_pred HHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 009143 249 VLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFL 328 (542)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 328 (542)
........ .+...|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++..+. .
T Consensus 410 a~al~~~~--~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 410 IVALPELN--VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred hhhcccCc--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 44432112 556788888888888999999999999999885 68899999999999999999999999999886 5
Q ss_pred CCHHHHH
Q 009143 329 PDVITYN 335 (542)
Q Consensus 329 p~~~~~~ 335 (542)
|...+|.
T Consensus 484 P~~pt~~ 490 (517)
T PRK10153 484 PGENTLY 490 (517)
T ss_pred CCCchHH
Confidence 5555553
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.087 Score=52.55 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=23.2
Q ss_pred ccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 453 NLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHCARGNMKEAEEVFAK 501 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 501 (542)
..|.++.|++.--.+.+ ..+-|....|..+.-+-+....+-..-+.|-+
T Consensus 1033 ~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1033 FEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred HhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 44566666554444443 23445555665555444444444433333333
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00081 Score=46.36 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 483 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
...+...|++++|...|++..+... -+...+..+..++...|++++|..+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455556666666666666655432 24555555556666666666666666665543
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.016 Score=45.31 Aligned_cols=93 Identities=19% Similarity=0.103 Sum_probs=50.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHH
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA--PDQISYKTIIQGLC 377 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~ 377 (542)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566666777777776666654433 234455556666667777777776666553211 01112222233445
Q ss_pred hcCCHHHHHHHHHHHHh
Q 009143 378 IHGDIVKAREFLLSMLE 394 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~ 394 (542)
..|+.++|++.+-..+.
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 56666666666655543
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0047 Score=52.57 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccccc-----------CChHHHHH
Q 009143 399 PEPHIWNVIIDGYGRC-----GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNL-----------GHIHLALQ 462 (542)
Q Consensus 399 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-----------g~~~~A~~ 462 (542)
.+..+|..+++.|.+. |..+=....++.|.+.|+.-|..+|+.||..+=..-+... .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4777888888887643 5666677778888888888888888888876322211111 11233445
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009143 463 LYDEMLRRGITPDIITYTELIKGHCAR 489 (542)
Q Consensus 463 ~~~~~~~~g~~p~~~~~~~li~~~~~~ 489 (542)
++++|...|+-||..++..+++.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 555555555555555555555555443
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.32 E-value=0.0013 Score=45.25 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
..+.+.|++++|.+.|+++++..+ .+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP----DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555443 4455555555555555555555555555543
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.31 E-value=0.16 Score=48.18 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=65.8
Q ss_pred HHHHHHHhhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHhC--CCCC------------C
Q 009143 89 ALDLILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDL--CLGGKIGTALWLRRKMIQK--GTVP------------D 152 (542)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p------------~ 152 (542)
+|+...-++.+..+.......+.. | ...|..+..++ -+.+.+..|++.+..-... +..| |
T Consensus 52 ilnAffl~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 52 ILNAFFLNNLDLMEKQLMELRQQF---G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 445555555555544433332222 2 22355555443 4778999999887766554 3222 2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC----CCHHhHHHHHHHHHH
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPS----PNCATYNAFITGYCR 200 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~ 200 (542)
...-+..++.+...|++.+++.+++++...-.+ .+..+|+.++-.+.+
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 222255677788999999999998888764443 788889886666554
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.00097 Score=46.45 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=24.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
+.|++++|.++++++....+ .+..++..++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP----DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555544443 34444444555555555555555555544443
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.16 Score=47.20 Aligned_cols=295 Identities=16% Similarity=0.103 Sum_probs=133.0
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 121 HVAVIRDLC--LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE--LCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 121 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
|..|-.++. -.|+-..|.++-.+-.+. +.-|......++.+ -.-.|+++.|.+-|+.|... |+-...-...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 444444443 335666666555544322 22233333333333 22346666676666666531 1111111222222
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHH--HHHHHHHH---
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVIT--STILMDSY--- 271 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~--- 271 (542)
.--+.|..+.|.++-++....- +.-.......+...+..|+++.|+++++.-....... +++.- -..|+.+-
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie--~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE--KDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHH
Confidence 2334566666666666654431 1223455566666666666666666666555433211 22211 11111111
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVA-YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (542)
.-.-+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+....|+ ... +..+.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cH
Confidence 1112344444444443332 333222 12223456666666666666666666532232 221 111223332 22
Q ss_pred HHHHHHHHHC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 009143 351 SHFYGVLSKT-GVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-GDLSNAFSIRDLM 427 (542)
Q Consensus 351 ~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m 427 (542)
..-++...+. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.-... |+-.++...+.+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2222222111 1122 3344445555555666666655544444332 34555565555554433 6666666666666
Q ss_pred HhC
Q 009143 428 LSF 430 (542)
Q Consensus 428 ~~~ 430 (542)
...
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 554
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.25 E-value=0.0088 Score=49.22 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQM 322 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 322 (542)
...++..+...|++++|.++.+.+.... |.+...|..+|.++...|+..+|.+.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555555555544 445555555555555555555555555554
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.023 Score=51.01 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG---DKFQALALWNDMFQKNIQTDIVA 298 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 298 (542)
|...|..|..+|...|+.+.|..-|.+..+..+ ++...+..+..++.... ...++..+|+++...+ +.|+.+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG----DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 445555555555555555555555555555544 44444444444443322 2344555555555544 344455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 299 YNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 299 ~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555555555555555555554
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.24 E-value=0.11 Score=45.86 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGT--VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
.|+. +..-.+.|++++|.+.|+.+..... +-...+.-.++-++-+.++++.|+..+++.....|.....-|-..|.+
T Consensus 37 LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3444 4455688999999999999987621 223445566777788899999999999998887665445566666666
Q ss_pred HHH
Q 009143 198 YCR 200 (542)
Q Consensus 198 ~~~ 200 (542)
++.
T Consensus 116 Ls~ 118 (254)
T COG4105 116 LSY 118 (254)
T ss_pred HHH
Confidence 654
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.21 E-value=0.0064 Score=51.76 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009143 328 LPDVITYNTLLNCLCKQ-----GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH 402 (542)
Q Consensus 328 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (542)
..+..+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------ 109 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------ 109 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH------------
Confidence 44667777777776543 5566666666777777777777777777766654 3221 011111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHH
Q 009143 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEML 468 (542)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~ 468 (542)
++..-| -.+-+-|++++++|...|+.||..|+..++..+ |....+.+-+.+|.
T Consensus 110 ---~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF--------G~~s~p~~K~~rmm 162 (228)
T PF06239_consen 110 ---AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIF--------GRKSHPMKKYRRMM 162 (228)
T ss_pred ---HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--------ccccHHHHHHHHHH
Confidence 111111 234577889999999999999999999999885 55555555555443
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.0016 Score=45.39 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+.|++++|.+.|+.+.+.. +.+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666655543 335555555556666666666666666555554
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.048 Score=47.71 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 009143 372 IIQGLCIHGDIVKAREFLLSMLEKSVVP--EPHIWNVIIDGYGRCGDLSNA 420 (542)
Q Consensus 372 li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 420 (542)
+...|.+.|.+..|..-++.+++.-+.. .....-.++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4455666777777777777766642210 112345556666666666543
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0061 Score=56.51 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCChh
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQML----KRGFL-PDVITYNTLLNCLCKQGKLDEASHFYGVLSK----TG-VAPDQI 367 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~ 367 (542)
.|..|.+.|.-.|+++.|+...+.-. +-|-. .....+..+.+++.-.|+++.|.+.|..... .| ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666666778888877655422 22211 1234567777888888888888877765432 22 122344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLEK-----SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
...+|...|.-..++++|+..+.+-+.. +..-....+..|..+|...|..++|+...+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666777777777788887776654321 1112456677888888888888888776665443
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.16 E-value=0.0023 Score=44.70 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG-DKFQALALWNDMF 288 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 288 (542)
.+|..+...+...|++++|+..|.+.++.++ .+..+|..+..++.+.| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p----~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP----NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST----THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444444443 44444444444444444 3444444444443
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.007 Score=49.82 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=60.4
Q ss_pred HHhcCChHHHHHHHHHHHhC--C-CCCCh------------------hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC
Q 009143 128 LCLGGKIGTALWLRRKMIQK--G-TVPDV------------------LTHNYLVNELCKIGDLEKADHVIREMSEMRPSP 186 (542)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~--g-~~p~~------------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 186 (542)
....|+.+.+...++++... | +-|+. .+...++..+...|++++|.++.+.+....| -
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~ 94 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP-Y 94 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-C
Confidence 34566777777777777653 2 11221 1123355566678888888888888887765 4
Q ss_pred CHHhHHHHHHHHHHcCChhhHHHHHHHHHH-----CCCCCChHHH
Q 009143 187 NCATYNAFITGYCRVNELDKALHLFSTMAN-----NGIRPNRVTH 226 (542)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 226 (542)
+...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 777888888888888888888888877643 4777776653
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.0035 Score=58.04 Aligned_cols=131 Identities=16% Similarity=0.063 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCC-CCCHH
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLE----KSV-VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS----FGV-SSNVF 437 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 437 (542)
.|..|...|.-.|+++.|+...+.-++ -|- ......+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 444555555556777777655544322 111 11233466667777777777777776665432 111 11111
Q ss_pred HHHHHHHHhhcccccccCChHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009143 438 TFNALILAETRGASCNLGHIHLALQLYDEMLR----R-GITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 503 (542)
Q Consensus 438 ~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (542)
+..++-.. |.-..+++.|+.++.+-.. . ...-....+-+|..+|...|..++|..+.+.-.
T Consensus 277 scYSLgNt-----ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNT-----YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11222222 2223456666666654432 1 011133556667777777777777776655544
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.09 E-value=0.28 Score=46.70 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=75.5
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccccc---ccCChHHHHHHHHHHHhCCCCCCH----HHHHH
Q 009143 411 YGRCGD-LSNAFSIRDLMLSFGVSSN-VFTFNALILAETRGASC---NLGHIHLALQLYDEMLRRGITPDI----ITYTE 481 (542)
Q Consensus 411 ~~~~g~-~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~---~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ 481 (542)
+-+.|. -++|+++++.+.+. .|. ...-|.+.. +....|. ....+.+-.++-+-+.+.|+.|-. ..-|.
T Consensus 389 lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~-fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF--TNYDIECENIVFL-FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 334454 78888888888873 332 222222211 1111111 123344444444444556777633 34455
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 482 LIKG--HCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 482 li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++++..-
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 5544 4568999988766555544 468999999999999999999999999987643
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.19 Score=44.15 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 009143 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (542)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 446 (542)
.+.+.++..+.-.|.+.-...++++.++...+.++.....|+..-.+.||.+.|...|++..+..-..|..+++.++.--
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556667777778888888999999988877788888999999999999999999999877644445555555554332
Q ss_pred hcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 447 TRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 447 ~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
....+.-.+++..|...+.+..... ..|+..-|.-.-+..-.|+..+|.+.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2223566778888888888887753 234555555555556688999999999999885
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.018 Score=52.21 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=41.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCC
Q 009143 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGD 311 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~ 311 (542)
.+.|++++|...|+.+++..+ ...-...++..+...|...|++++|...|+.+.+.. -+.....+..+...+...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 344555555555555555443 111112344445555555555555555555554331 11123333334444445555
Q ss_pred HHHHHHHHHHHHHc
Q 009143 312 ISSAFAYFCQMLKR 325 (542)
Q Consensus 312 ~~~A~~~~~~~~~~ 325 (542)
.++|...|+++.+.
T Consensus 233 ~~~A~~~~~~vi~~ 246 (263)
T PRK10803 233 TAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.05 E-value=0.24 Score=46.96 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 294 TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.+-..+.+++.+..-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45555667777777777777777777777765
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.03 E-value=0.31 Score=46.16 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
.+-..+.+++.+..-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 46666777788888888888888888888764
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.015 Score=52.67 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=66.6
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR----VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (542)
..|...+..+.+.|++++|...|+.+.+.- |+. ..+..+...|...|++++|...|..+++..+ ..+....++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHH
Confidence 345555554556677788887777777642 332 4566677777778888888888888877655 222345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
..++..+...|+.++|.+.|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66667777788888888888877765
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.96 E-value=0.0025 Score=45.83 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHc----CCC-CC-hhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 477 ITYTELIKGHCARGNMKEAEEVFAKIQTL----GLA-ID-HIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
.+|+.+...|...|++++|+..+++..+. |.. |+ ..++..+..++...|++++|.++++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57888999999999999999999988752 211 22 567888899999999999999999998764
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.90 E-value=0.38 Score=45.06 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (542)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-.++-.. .-++..|-.++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555566666666666544432 46677777777777777777766554321 123466777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009143 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIR 424 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (542)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 777777777666551 1 245566667777777776543
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.65 Score=47.14 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=76.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009143 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (542)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 443 (542)
-...+.+--+.-+...|+..+|.++-.+..- ||...|..-+.+++..+++++-+++-+.+.. ..-|.-+.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHH
Confidence 3344555556666777888888877766543 6888888888888888888887776655442 23344455
Q ss_pred HHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 444 LAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 500 (542)
Q Consensus 444 ~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 500 (542)
.+ +.+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++--
T Consensus 752 e~-----c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EA-----CLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HH-----HHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 55 45668888888887654321 156778888888888876543
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.061 Score=53.07 Aligned_cols=221 Identities=13% Similarity=0.106 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHH---------HHHhhCCCCCCHHhHHHHHHHHHHcCC--hhhHHHHHHHHHHCCCCC
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVI---------REMSEMRPSPNCATYNAFITGYCRVNE--LDKALHLFSTMANNGIRP 221 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 221 (542)
+..+.+-+-.|...|.+++|.++- +.+... ..+.-.++..=.+|.+..+ +-+-+.-++++++.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334444455566677777764331 111110 0122234444455555544 334445566777788777
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI-----LMDSYFKNGDKFQALALWNDMFQKNIQTDI 296 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 296 (542)
+... +...++-.|++.+|.++|.+--..+ .-...|+- +.+-+...|..++-..+.++-.+. ..+.
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~ 703 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNI 703 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhc
Confidence 7654 4455667788888888876542111 11111111 223334444444433333322111 0011
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH------HHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 009143 297 VAYNVLINGFCLNGDISSAFAYFCQ------MLKRGF---LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQI 367 (542)
Q Consensus 297 ~~~~~li~~~~~~~~~~~A~~~~~~------~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 367 (542)
.--.+....+...|+.++|..+..+ +.+-+- ..+..+...+...+.+...+..|-++|..|-.
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 1111233445556666666654321 111111 22344555555555566677777777766533
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLE 394 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (542)
...+++.+...+++++|..+-++..+
T Consensus 776 -~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 776 -LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred -HHHHhhheeecccchHhHhhhhhCcc
Confidence 23466777778888888877766544
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.29 Score=44.04 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 009143 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREM 179 (542)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (542)
....|++.+|..+|+...+.. +-+......++.+|...|+++.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344455555555555555432 112334444555555555555555555444
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.62 E-value=0.016 Score=40.91 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=22.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
|.+.+++++|.++++.++..++ .+...+.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDP----DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCc----ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444444444444333 3333444444444444444444444444443
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.60 E-value=0.019 Score=46.88 Aligned_cols=87 Identities=11% Similarity=0.008 Sum_probs=39.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009143 411 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG 490 (542)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 490 (542)
+-..|++++|..+|+-+.-. .|...-|..-+.+| +-..+++++|...|......+. -|+..+-....+|...|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~----~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAV----CQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 34455555555555555542 33333343333332 2334555555555554443321 12222333444555555
Q ss_pred CHHHHHHHHHHHhH
Q 009143 491 NMKEAEEVFAKIQT 504 (542)
Q Consensus 491 ~~~~A~~~~~~m~~ 504 (542)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 55555555555544
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.60 E-value=0.018 Score=40.65 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
..|.+.+++++|.++++.+...+ |.++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566666666666666666654 445556666666666666666666666666655
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.064 Score=47.63 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=41.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCH
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDI 312 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 312 (542)
+.|++..|...|...++..+ ..+-....+.-|..++...|++++|..+|..+.+.- .+.-+.++-.|.....+.|+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 44445555555555555444 222233344445555555555555555555544431 111233444444455555555
Q ss_pred HHHHHHHHHHHHc
Q 009143 313 SSAFAYFCQMLKR 325 (542)
Q Consensus 313 ~~A~~~~~~~~~~ 325 (542)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.27 E-value=0.41 Score=39.32 Aligned_cols=88 Identities=15% Similarity=-0.009 Sum_probs=56.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 311 (542)
-+...|++++|..+|.-+...++ .+..-|..|..++-..+++++|...|......+ .-|+..+.....++...|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF----YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 34466777777777776666555 555566666666666777777777776665544 3444445556666667777
Q ss_pred HHHHHHHHHHHHH
Q 009143 312 ISSAFAYFCQMLK 324 (542)
Q Consensus 312 ~~~A~~~~~~~~~ 324 (542)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776666665
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.17 E-value=0.87 Score=42.15 Aligned_cols=230 Identities=13% Similarity=0.094 Sum_probs=124.7
Q ss_pred cCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----HHcC-CCCCHHHHHHHHHHHHhcCC
Q 009143 274 NGDKFQALALWNDMFQK--NIQTDIVAYNVLINGFCLNGDISSAFAYFCQM----LKRG-FLPDVITYNTLLNCLCKQGK 346 (542)
Q Consensus 274 ~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~-~~p~~~~~~~li~~~~~~g~ 346 (542)
..+.++|+..|...+.+ +...--.+|..+..+.++.|.+++++..--.- .+.. -..--..|..+.+++.+..+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554432 00112234555666666777666654432111 1110 00012234445555555555
Q ss_pred HHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCh
Q 009143 347 LDEASHFYGVLSKT-GVAP---DQISYKTIIQGLCIHGDIVKAREFLLSMLEK-----SVVPEPHIWNVIIDGYGRCGDL 417 (542)
Q Consensus 347 ~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~ 417 (542)
+.+++.+-..-... |..| ......++..++...+.++++++.|+...+- +.......+..|...|.+..|+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 55555544433221 2122 1123344556666677788888888877642 1122345678888888888888
Q ss_pred HHHHHHHHHHHh----CCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHh
Q 009143 418 SNAFSIRDLMLS----FGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR----RGITPDI-ITYTELIKGHCA 488 (542)
Q Consensus 418 ~~A~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~-~~~~~li~~~~~ 488 (542)
++|.-...+..+ .++..-..-|..++.....-++-..|.+.+|.+..++..+ .|-.|-. .....+.+.|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 888766655443 3333323334433322211135567888888888887765 3433322 445678889999
Q ss_pred cCCHHHHHHHHHHHh
Q 009143 489 RGNMKEAEEVFAKIQ 503 (542)
Q Consensus 489 ~g~~~~A~~~~~~m~ 503 (542)
.|+.+.|..-++...
T Consensus 259 ~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAM 273 (518)
T ss_pred cccHhHHHHHHHHHH
Confidence 999998887777644
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.12 E-value=0.5 Score=38.37 Aligned_cols=126 Identities=9% Similarity=0.071 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (542)
-..++..+.+.+.+.....+++.+...+. .+...++.++..|++.+. .+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45678888888888899999988888763 577788888888887643 344344432 1233444557777878
Q ss_pred cCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 009143 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (542)
.+.++++..++.++.. +...+..+... ++.+.|.+++.+. .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---------CCHHHHHHHHHHHH
Confidence 8888888888776632 12233333333 6777777776652 34556666665554
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.05 E-value=0.023 Score=40.73 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQK----NI-QTD-IVAYNVLINGFCLNGDISSAFAYFCQM 322 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~ 322 (542)
+++.+...|...|++++|+..|++..+. |. .|+ ..++..+...+...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444444321 10 011 233444444444455555554444443
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.24 Score=47.65 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV---ITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
+...++.+..+|.+.|++++|+..|++.++.++ .+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNP----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666677777777777777777777776665 333 34667777777777777777777776653
No 227
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.04 E-value=1.3 Score=41.52 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET 447 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 447 (542)
+.+..+.-+...|+...|.++-++.. .|+...|...+.+++..++|++-.++... . -.+.-|..++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~-- 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEA-- 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHH--
Confidence 44555666667787777777655542 26888888888888888888877665332 1 123556666665
Q ss_pred cccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009143 448 RGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVF 499 (542)
Q Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 499 (542)
+.+.|...+|..+..++ + +..-+..|.+.|++.+|.+.-
T Consensus 247 ---~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 247 ---CLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred ---HHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 34557788888777661 1 245566778888888887654
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.01 E-value=1.5 Score=41.91 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 009143 137 ALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (542)
Q Consensus 137 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (542)
-+++-+++.+. +.|..+|..|+.-|...|..++..+++++|..--| --..+|...+.+-...+++.....+|.+...
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp-~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP-IMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc-cccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 34555555553 45788999999999999999999999999976332 2356788888888888999999999999877
Q ss_pred CCCCCChHHHHHHHHHHHh
Q 009143 217 NGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 217 ~g~~p~~~~~~~l~~~~~~ 235 (542)
... +...|...+.-..+
T Consensus 105 k~l--~ldLW~lYl~YIRr 121 (660)
T COG5107 105 KSL--NLDLWMLYLEYIRR 121 (660)
T ss_pred hhc--cHhHHHHHHHHHHh
Confidence 543 45555555544333
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=1 Score=40.65 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=25.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
...|++.+|...|+......+ .+...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~----~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP----ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555555443 333444445555555555555555555443
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.95 E-value=0.26 Score=38.90 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009143 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITY 479 (542)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 479 (542)
|..++..++.++++.|+.+....+++..- |+.++.. ...+. --......|+..+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~--------------~~~~~---------~~~~spl~Pt~~lL 55 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK--------------KKEGD---------YPPSSPLYPTSRLL 55 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc--------------cccCc---------cCCCCCCCCCHHHH
Confidence 45678888999999999888888876543 3333210 01111 11224568999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhH-cCCCCChhHHHHHHHHHHhc
Q 009143 480 TELIKGHCARGNMKEAEEVFAKIQT-LGLAIDHIPFRILKKRYRRM 524 (542)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~~~ 524 (542)
.+++.+|+..|++..|.++++...+ .+++.+..+|..|+.-....
T Consensus 56 ~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 56 IAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999887 67888889999888765433
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.93 E-value=0.37 Score=48.10 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHH
Q 009143 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH------IWNVIIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTF 439 (542)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~ 439 (542)
..++....-.||-+.+++.+.+..+.+-.-.+. .|...+..++. ..+.+.|.++++.+.+. .|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344444455566666666666554432111111 23333333322 34567777777777763 5666555
Q ss_pred HHHHHHhhcccccccCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHH
Q 009143 440 NALILAETRGASCNLGHIHLALQLYDEMLRRGI---TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRI 516 (542)
Q Consensus 440 ~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 516 (542)
...-.- .+...|++++|++.|++...... +.....+--+.+.+.-.++|++|.+.|.++.+..- -+..+|.-
T Consensus 270 l~~~gR----~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y 344 (468)
T PF10300_consen 270 LFFEGR----LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAY 344 (468)
T ss_pred HHHHHH----HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 443332 24556788888888876553110 11223445567777888888888888888887432 24444433
Q ss_pred HHH-HHHhcCCh-------hHHHHHHHHH
Q 009143 517 LKK-RYRRMKES-------DKARDIHQKW 537 (542)
Q Consensus 517 l~~-~~~~~g~~-------~~A~~~~~~~ 537 (542)
+.. ++...|+. ++|.++++++
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 333 34566777 7777777776
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=0.18 Score=44.91 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc-CCCC-Chh
Q 009143 437 FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGIT--PDIITYTELIKGHCARGNMKEAEEVFAKIQTL-GLAI-DHI 512 (542)
Q Consensus 437 ~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~-~~~ 512 (542)
..|+.-+. +.+.|++..|..-|...++.... -....+-.|..++...|++++|..+|..+.+. +-.| -+.
T Consensus 143 ~~Y~~A~~------~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 143 KLYNAALD------LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 35777665 45678899999999998885211 12345556889999999999999999988873 2222 246
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 513 PFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
.+--|.....+.|+.++|...|++..++
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6777888889999999999999988764
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.23 Score=46.66 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
+..+.-++.+.+++..|++.-.+++..++ .++.....-..++...|+++.|...|+.+.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~----~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDP----NNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34444455555555555555555555444 45555555555555555555555555555544
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.87 E-value=0.21 Score=48.10 Aligned_cols=66 Identities=14% Similarity=-0.000 Sum_probs=53.5
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 009143 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEM 182 (542)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 182 (542)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345668888889999999999999999998875 3443 35888888899999999999988888774
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.84 E-value=0.3 Score=39.04 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
+.|++++|.+.|+.+..+.+ ..+-...+...|+.+|.+.+++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44444444444444444433 11122233344444444444444444444444443
No 236
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.83 E-value=1.7 Score=43.49 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHH--
Q 009143 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDII-- 477 (542)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-- 477 (542)
+..+...+..-+.+...+.-|-++|..|-+. ..++.. +...+++.+|..+-++.-+. .||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVql-----Hve~~~W~eAFalAe~hPe~--~~dVy~p 809 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQL-----HVETQRWDEAFALAEKHPEF--KDDVYMP 809 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhh-----eeecccchHhHhhhhhCccc--cccccch
Confidence 4445555555566677777888888877542 122322 56778888888877766553 34432
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 478 ---------TYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 478 ---------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
-|...-.+|.++|+-+||..+++++...
T Consensus 810 yaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233456788889999999988887653
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.83 E-value=0.37 Score=47.43 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 009143 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (542)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (542)
.-.+.++.-+-+.|-++.|+++-.. +. .-.+...+.|+++.|.++.++ .++...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 3478888888888888888876433 21 234556778888888554432 24677888999988
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
.+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+.....+. ++....++.-.|+.+
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD---------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----------HHHHHHHHHHHT-HH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC---------HHHHHHHHHHcCCHH
Confidence 899999888888877542 45566677788888888888777766654 455555666667777
Q ss_pred HHHHHHHHH
Q 009143 279 QALALWNDM 287 (542)
Q Consensus 279 ~a~~~~~~~ 287 (542)
+..+++.+-
T Consensus 420 ~cv~lL~~~ 428 (443)
T PF04053_consen 420 ECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 777666543
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.79 E-value=1.6 Score=40.37 Aligned_cols=167 Identities=13% Similarity=0.046 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009143 367 ISYKTIIQGLCIHGDI---VKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (542)
Q Consensus 367 ~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 443 (542)
.++..++.+|...+.. ++|..+++.+...... .+..+-.-+..+.+.++.+++.+++.+|...-.. ....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 3556666677666553 4555666666544332 3445555566666677888888888888774211 122333333
Q ss_pred HHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHH--HHH---HHHHhcCC------HHHHHHHHHHHhH-cCCCCCh
Q 009143 444 LAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYT--ELI---KGHCARGN------MKEAEEVFAKIQT-LGLAIDH 511 (542)
Q Consensus 444 ~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~li---~~~~~~g~------~~~A~~~~~~m~~-~g~~~~~ 511 (542)
..+. .........|...+..+....+.|....|. .++ ....+.++ .+...++++...+ .+.+.+.
T Consensus 163 ~~i~---~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 163 HHIK---QLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHH---HHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 2211 011233455666666666543444443111 111 11112111 4444455554333 3333444
Q ss_pred hHHHHH-------HHHHHhcCChhHHHHHHHHHh
Q 009143 512 IPFRIL-------KKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 512 ~~~~~l-------~~~~~~~g~~~~A~~~~~~~l 538 (542)
.+-.++ +..+.+++++++|.++|+-.+
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333222 233568899999999998654
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.77 E-value=0.42 Score=37.17 Aligned_cols=91 Identities=21% Similarity=0.134 Sum_probs=54.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI---VAYNVLINGFCL 308 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~ 308 (542)
+....|+++.|++.|.+.+..-+ ....+||.-..++--.|+.++|++=+++..+..-...- .+|..-...|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 34566777777777777766555 56667777777777777777777766666654212221 123333344555
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 009143 309 NGDISSAFAYFCQMLKRG 326 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~~~~ 326 (542)
.|+-+.|..-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 667777777676666655
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.23 Score=46.66 Aligned_cols=127 Identities=17% Similarity=0.073 Sum_probs=97.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCC-----CC---------CCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChH
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMR-----PS---------PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRV 224 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~-----~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 224 (542)
-.+.|.+.|++..|...|++....- .. .-..+++.+..++.+.+++.+|++.-++....+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 3456778888888888877754311 11 123467788889999999999999999998874 56788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ-ALALWNDMFQK 290 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 290 (542)
..-.-..++...|+++.|+..|+++++..| .|-.+-+-|+.+--+.....+ ..++|..|...
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P----~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEP----SNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888889999999999999999999999887 777777777777666655544 36777777653
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.72 E-value=0.83 Score=44.21 Aligned_cols=145 Identities=11% Similarity=0.009 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHH---hCCCCCCCCcHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 239 LGDAVKFLGEVL---ADDDGKATSDVITSTILMDSYFKN---------GDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 239 ~~~a~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
.+.|..+|.+.+ ..++ .....|..+..++... .+..+|.++-++..+.+ +.|+.....+..+.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp----~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~ 348 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQT----LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHhhcccCCc----ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677777777 4333 3455555544444322 23456666777777766 66777777777777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHH
Q 009143 307 CLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTG-VAPDQISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~ 384 (542)
.-.++++.|...|++.... .|| ..+|........-.|+.++|.+.+++..+.. ...........++.|+. ...++
T Consensus 349 ~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~ 425 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKN 425 (458)
T ss_pred HhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-Cchhh
Confidence 7777777777788777765 343 4455555555566777777777777755532 11112233344445554 33466
Q ss_pred HHHHHHH
Q 009143 385 AREFLLS 391 (542)
Q Consensus 385 A~~~~~~ 391 (542)
|+.++-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 6666544
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.23 Score=39.29 Aligned_cols=98 Identities=16% Similarity=0.277 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009143 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (542)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (542)
|..++..++.++++.|+.+....+++..- |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566667777777777777666665432 22222100 0000 1112345678888888888
Q ss_pred HHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHhh
Q 009143 410 GYGRCGDLSNAFSIRDLMLS-FGVSSNVFTFNALILAET 447 (542)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~ 447 (542)
+|+..|++..|+++.+...+ .+++-+..+|..++.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888766 566667777877777643
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.62 E-value=0.4 Score=37.29 Aligned_cols=92 Identities=14% Similarity=0.037 Sum_probs=51.1
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCC
Q 009143 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR---VTHNILVHALCKKGL 238 (542)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~ 238 (542)
++...|+++.|++.|.+.+..-|+ ....||.-..++--.|+.++|++=+++..+..-.-+. ..|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566777777777666655442 5566666666666666666666666666553211111 223333344455556
Q ss_pred hhHHHHHHHHHHhCCC
Q 009143 239 LGDAVKFLGEVLADDD 254 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~ 254 (542)
.+.|..-|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666655555555443
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.58 E-value=0.32 Score=38.88 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGT--VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (542)
+..-.....+.|++++|++.|+.+..+-. +-...+-..++.+|.+.|+++.|...+++..+..|..-..-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33344455688999999999999988721 1234556678899999999999999999999877764456666666666
Q ss_pred HHcC
Q 009143 199 CRVN 202 (542)
Q Consensus 199 ~~~g 202 (542)
+...
T Consensus 93 ~~~~ 96 (142)
T PF13512_consen 93 SYYE 96 (142)
T ss_pred HHHH
Confidence 5543
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=0.52 Score=46.40 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3444555555555555555555555544331 333444444445544444444444433
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.47 E-value=1 Score=45.03 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCC-CCCCh-----HHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCCCcH
Q 009143 192 NAFITGYCRVNELDKALHLFSTMANNG-IRPNR-----VTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDV 261 (542)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 261 (542)
..++....=.|+-+.+++.+.+..+.+ +.-.. -.|...+..++. ....+.|.+++..+....| ...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP----~s~ 267 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP----NSA 267 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC----CcH
Confidence 345555555666666666666654432 21111 122222222222 3456667777777777654 444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 262 ITSTILMDSYFKNGDKFQALALWNDMFQKN---IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
...-.-.+.+...|++++|++.|++..... .+.....+--+...+.-..+|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 444555666677777777777777544311 02233445556667777788888888888887753 33344444333
Q ss_pred H-HHHhcCCH-------HHHHHHHHHHHH
Q 009143 339 N-CLCKQGKL-------DEASHFYGVLSK 359 (542)
Q Consensus 339 ~-~~~~~g~~-------~~A~~~~~~~~~ 359 (542)
. ++...|+. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 33445666 777777776643
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=1.3 Score=45.75 Aligned_cols=214 Identities=14% Similarity=0.147 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
+...-+..+.+...++.|..+-+.-..... .-........+-+.+.|++++|...|-+-...- .|. .+|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d----~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDED----TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHH
Confidence 345566777777788888777654321111 122334445556677888998888777665321 222 2455
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 009143 305 GFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 384 (542)
-|.....+.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 566777777888888888888855 55566678889999998888777665443 2211 1113445556666666777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHH
Q 009143 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLY 464 (542)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~ 464 (542)
|..+-.+... +...... .+...+++++|++.++.+.-...-+....|...+-- ..+++-.+++
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~---------h~P~~t~~il 544 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELLRTLNKYGKILLE---------HDPEETMKIL 544 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---------hChHHHHHHH
Confidence 7666555432 2333333 345568888988888765432223334444444422 4566666666
Q ss_pred HHHHh
Q 009143 465 DEMLR 469 (542)
Q Consensus 465 ~~~~~ 469 (542)
-+...
T Consensus 545 i~~~t 549 (933)
T KOG2114|consen 545 IELIT 549 (933)
T ss_pred HHHHh
Confidence 55554
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.74 Score=42.13 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=57.2
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHH----HHHHHHHHhcCChh
Q 009143 165 KIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTH----NILVHALCKKGLLG 240 (542)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~g~~~ 240 (542)
..|+..+|...++++++..| .|...++-.=.+|.-.|+.+.-...++++... ..|+...| ....-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555555555555555443 25555555555555555555555555555432 11222111 22223333455555
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (542)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 286 (542)
+|++.-++..+.++ .|..+..++...+--.|+..++.+...+
T Consensus 193 dAEk~A~ralqiN~----~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINR----FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCC----cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555555554 5555555555555555555555554433
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.28 E-value=2 Score=38.14 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=35.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 372 IIQGLCIHGDIVKAREFLLSMLEKSVV--PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 372 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
+.+.|.+.|.+..|..-++.|++.-.. -....+-.+..+|.+.|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445677777777777777777765211 1122344556667777777777666555544
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=4.1 Score=41.72 Aligned_cols=313 Identities=11% Similarity=0.039 Sum_probs=165.8
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL--GDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (542)
.+|.-+...+.+..|+++-..+...-.. ....|......+.+..+. +++.+...+-+.... .....|..+..-
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~----~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL----TPGISYAAIARR 516 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC----CCceeHHHHHHH
Confidence 3566677778888888887766432111 156666677666665322 223333333222211 344567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------CCCCHHHHH
Q 009143 271 YFKNGDKFQALALWNDMFQKNIQ----TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG-----------FLPDVITYN 335 (542)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----------~~p~~~~~~ 335 (542)
...+|+.+-|..+++.=...+.. .+..-+..-+.-..+.|+.+-...++..+..+- .+.....|.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 78888888888877643322100 111223344455556666666666655554320 011111122
Q ss_pred HHHH--------HHHhcCCHHHHHHHHH--HHHHC-CCCCChhhHHHHHHHHHhcCCH---HHHH-------HHHHHHHh
Q 009143 336 TLLN--------CLCKQGKLDEASHFYG--VLSKT-GVAPDQISYKTIIQGLCIHGDI---VKAR-------EFLLSMLE 394 (542)
Q Consensus 336 ~li~--------~~~~~g~~~~A~~~~~--~~~~~-~~~~~~~~~~~li~~~~~~g~~---~~A~-------~~~~~~~~ 394 (542)
.+++ .+.+.++-.++..-|. ..... .+.+-..........+.+.... ++|. ++.+.+..
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~ 676 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED 676 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2221 0111222122221111 10000 0111112223333444443321 1111 11112211
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCC
Q 009143 395 -KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGIT 473 (542)
Q Consensus 395 -~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~ 473 (542)
.+..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+ +...+++++-+++-+...
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~a-----La~~~kweeLekfAkskk----- 742 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTA-----LADIKKWEELEKFAKSKK----- 742 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHH-----HHhhhhHHHHHHHHhccC-----
Confidence 1222233345556666778889999988877665 5787777777766 667788887777665544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 009143 474 PDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 534 (542)
Q Consensus 474 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (542)
.+.-|.-++.+|.+.|+.+||.+++.+.... + -...+|.+.|++.+|.++-
T Consensus 743 -sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 743 -SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred -CCCCchhHHHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHhccHHHHHHHH
Confidence 2455777889999999999999988654321 1 4677888889988887654
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=2 Score=37.70 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHcC---CCCChhHHHHHHHHHHhcCChhHHHHHH
Q 009143 479 YTELIKGHCARGNMKEAEEVFAKIQTLG---LAIDHIPFRILKKRYRRMKESDKARDIH 534 (542)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (542)
|-..|-.+....++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444555555666677776666643321 122445555666555 356666655544
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=2 Score=37.87 Aligned_cols=154 Identities=16% Similarity=0.067 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009143 275 GDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-GFLPDVITYNTLLNCLCKQGKLDEASH 352 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (542)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444555444443211 02345555555556666666666655555431 123334444445555555555556665
Q ss_pred HHHHHHHCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 353 FYGVLSKTGVAPDQISYKTIIQ-GLCIHGDIVKAREFLLSMLEKSV--VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 555555432221 111111222 44555555555555555543211 01222233333334445555555555555544
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.12 E-value=2.7 Score=38.81 Aligned_cols=191 Identities=14% Similarity=0.045 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHc--------CCCCCH-----HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHH
Q 009143 311 DISSAFAYFCQMLKR--------GFLPDV-----ITYNTLLNCLCKQGKLD---EASHFYGVLSKTGVAPDQISYKTIIQ 374 (542)
Q Consensus 311 ~~~~A~~~~~~~~~~--------~~~p~~-----~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~ 374 (542)
+++.|...+++..+. ...|+. .++..++.+|...+..+ +|..+++.+.... +-.+.++..-++
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~ 129 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLE 129 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 666666666654432 122332 34566777777766544 4555666664432 223455556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHhhccc
Q 009143 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR--CGDLSNAFSIRDLMLSFGVSSNVFTF--NALILAETRGA 450 (542)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~ 450 (542)
.+.+.++.+++.+.+.+|+..-.. ....+..++..+.. ......|...+..+....+.|....+ ..++.......
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~ 208 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTT 208 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHc
Confidence 676778888888888888875321 23344444444421 23345666666666654444444211 11111100000
Q ss_pred ----ccccCChHHHHHHHHHHHh-CCCCCCHHH---HHHHHH----HHHhcCCHHHHHHHHHHHh
Q 009143 451 ----SCNLGHIHLALQLYDEMLR-RGITPDIIT---YTELIK----GHCARGNMKEAEEVFAKIQ 503 (542)
Q Consensus 451 ----~~~~g~~~~A~~~~~~~~~-~g~~p~~~~---~~~li~----~~~~~g~~~~A~~~~~~m~ 503 (542)
....+.++....++....+ .+.+.+..+ ..++++ .+.+.++|++|.+.++-..
T Consensus 209 ~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 209 QSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 0111225555566664443 222333333 333433 4567999999999998543
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.8 Score=41.93 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=84.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChH
Q 009143 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIW----NVIIDGYGRCGDLS 418 (542)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~ 418 (542)
..|+..+|...++++.+. .+.|...++..=.+|...|+.+.-...++++... ..+|...| ..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666776677776664 4556666666667777777777777777776643 12333232 23334455677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 009143 419 NAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRR---GITPDIITYTELIKGHCARGNMKEA 495 (542)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~li~~~~~~g~~~~A 495 (542)
+|.+.-++..+.+ +.|...-.+..+. +...|+..++.++..+-... +--.-...|-...-.+...+.++.|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHV-----lem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHV-----LEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHH-----HHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 7777777766632 2233333333333 33457777777776655431 0000111222233344456777777
Q ss_pred HHHHHHH
Q 009143 496 EEVFAKI 502 (542)
Q Consensus 496 ~~~~~~m 502 (542)
.++|+.=
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 7777653
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.88 E-value=0.25 Score=43.86 Aligned_cols=93 Identities=12% Similarity=0.202 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccC-----------ChHHHHH
Q 009143 399 PEPHIWNVIIDGYGR-----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLG-----------HIHLALQ 462 (542)
Q Consensus 399 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g-----------~~~~A~~ 462 (542)
-|..+|-+.+..+.. .+..+=....++.|.+.|+..|..+|+.|+..+-..-+.-.+ +-+=+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 467777777777654 355666777788888899999999999988863221111111 1122445
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009143 463 LYDEMLRRGITPDIITYTELIKGHCARGN 491 (542)
Q Consensus 463 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 491 (542)
++++|...|+.||..+-..|+.++.+.|-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 55555555555555555555555555443
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.88 E-value=1.9 Score=35.66 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=52.4
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHH---HHHHHHHHHHhc
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI---TSTILMDSYFKN 274 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 274 (542)
.+.++.++|+.-|..+.+.|...-+ -............|+...|...|+++-...+ . |... ....-.-.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~--P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-I--PQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-C--cchhhHHHHHHHHHHHhcc
Confidence 3455555555555555555432111 1112222333445555555555555544332 1 1111 111111223344
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
|.+++.....+.+...+-+.-...-..|.-+-.+.|++..|.+.|.++..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555554444444333233333334444444555555555555555443
No 257
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.87 E-value=5.4 Score=41.01 Aligned_cols=280 Identities=15% Similarity=0.083 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCCcHHHHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 009143 239 LGDAVKFLGEVLADDDGKATSDVITSTILM--DS-YFKNGDKFQALALWNDMFQ-------KNIQTDIVAYNVLINGFCL 308 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~ 308 (542)
...+.++++...+.+. ........++ .+ +....|.+.|...++.+.. .+ .+....-+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4567888888877665 2222222222 22 4456788899998888876 44 33355566667766
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----h
Q 009143 309 NG-----DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK-QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC----I 378 (542)
Q Consensus 309 ~~-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~ 378 (542)
.. +.+.|+.++.+..+.| .|+...+...+.-... ..+...|.++|....+.|.. ..+-.+..+|. .
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 6677999999988887 4455444333332222 24578999999998888742 23333333332 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccc--ccCC
Q 009143 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASC--NLGH 456 (542)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~g~ 456 (542)
..+...|..++++.-+++. |....-...+..+.. ++++.+.-.+..+.+.|..--...-..++......... ...+
T Consensus 377 ~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 3468899999999988873 232222223333444 77777777777766654332111111111110000011 1235
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHH----hcCChh
Q 009143 457 IHLALQLYDEMLRRGITPDIITYTELIKGHCAR----GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR----RMKESD 528 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~----~~g~~~ 528 (542)
.+.+...+.+....| +......+.+.|... .+++.|...+......+ ....-.+...+- ... +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 677777777776654 445555666655543 34667777776666553 222222333322 122 56
Q ss_pred HHHHHHHHHhh
Q 009143 529 KARDIHQKWLL 539 (542)
Q Consensus 529 ~A~~~~~~~l~ 539 (542)
.|.++|++..+
T Consensus 527 ~a~~~~~~~~~ 537 (552)
T KOG1550|consen 527 LAKRYYDQASE 537 (552)
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=94.86 E-value=3.2 Score=40.35 Aligned_cols=79 Identities=15% Similarity=-0.026 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009143 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFC 320 (542)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 320 (542)
+|.++-+..++.++ .|..+...+..+..-.++++.|..+|++....+ +....+|......+.-.|+.++|.+.++
T Consensus 322 ~a~~~A~rAveld~----~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 322 KALELLDYVSDITT----VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHhcCC----CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444444 444444444444444444555555555544443 2233344444444444455555555555
Q ss_pred HHHH
Q 009143 321 QMLK 324 (542)
Q Consensus 321 ~~~~ 324 (542)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 5443
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.76 E-value=0.12 Score=32.09 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
+..+...|...|++++|+++++++++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34444445555555555555555555444
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.66 E-value=0.11 Score=32.19 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMR 183 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 183 (542)
+..+...|.+.|++++|+++|+++.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444444444555555555555444443
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.65 E-value=3.8 Score=40.02 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009143 267 LMDSYFKNGDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQM 322 (542)
Q Consensus 267 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 322 (542)
+..+.-+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555433211 12224444555555555555555555544
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.55 E-value=0.079 Score=31.11 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHh
Q 009143 513 PFRILKKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~l 538 (542)
+|..|...|.+.|++++|+++|+++|
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888854
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.49 E-value=1.2 Score=41.32 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCChhHHH
Q 009143 128 LCLGGKIGTALWLRRKMIQK--GTVPDVLTHNYLVNELCKIGDLEKAD 173 (542)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~ 173 (542)
+..+.+.++|+..+..-+.+ .......++..+..+.+..|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 44566677777666665543 11112334555556666666555543
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.46 E-value=9 Score=41.68 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG--DKFQALALWNDMFQ 289 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 289 (542)
+...+.+...+.+.. |+ .....++.+|.+.+ .+++++....+...
T Consensus 774 ~~vc~~vr~~l~~~~----~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 774 NSVCDAVRNALERRA----PD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHHHHhhcC----cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344444444444443 44 55566777777776 66677666666653
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.38 E-value=3.3 Score=40.42 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 336 TLLNCLCKQGKLDEASHFYGVLSKTGVA-PDQISYKTIIQGLCIHGDIVKAREFLLSM 392 (542)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 392 (542)
.+..++-+.|+.++|.+.+.+|.+.... ....+...|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444555555555555555443211 11224444555555555555555555554
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.38 E-value=0.33 Score=43.21 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH
Q 009143 114 LETDYRRHVAVIRDLCL-----GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC 188 (542)
Q Consensus 114 ~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 188 (542)
-+.|-.+|.+.+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+..-. |..
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~n 126 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQN 126 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHH
Confidence 34455566666666653 355666667788888889998999998888876543211 211
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 239 (542)
.. ....--|- .+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 127 vf-Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VF-QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HH-HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11 11111111 22345788899999999999999999999998877653
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=2.6 Score=34.87 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 009143 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV-AYNV 301 (542)
Q Consensus 223 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 301 (542)
..+|...++ +.+.+..++|+.-|.++.+.+.+. -.+.............|+...|...|+++-.....|-.. -...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 344554444 457788889999999998887633 333444445566778889999999999887653233222 1111
Q ss_pred H--HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 302 L--INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 302 l--i~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
| .-.+...|.+++.....+.+...+-+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 2235567888887777776665543334445566666777888888888888877664
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=2.2 Score=36.12 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=23.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 484 KGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
+.....|.+++|..+++.....++ .......-.+.+...|+.++|+.-|++.++
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 334445555555555444433322 112222333444555555555555555444
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.24 E-value=8.5 Score=40.53 Aligned_cols=230 Identities=12% Similarity=0.038 Sum_probs=125.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHH
Q 009143 305 GFCLNGDISSAFAYFCQMLKRGFLPDV-------ITYNTLLN-CLCKQGKLDEASHFYGVLSKT----GVAPDQISYKTI 372 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l 372 (542)
......++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445578899999999887754222221 12333322 234578899999988877654 123345566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHH--HHHHhcCCh--HHHHHHHHHHHhC--CCCC----CHHHH
Q 009143 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPH---IWNVII--DGYGRCGDL--SNAFSIRDLMLSF--GVSS----NVFTF 439 (542)
Q Consensus 373 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li--~~~~~~g~~--~~A~~~~~~m~~~--~~~p----~~~~~ 439 (542)
..+..-.|++++|..+..+..+..-.-+.. .|..+. ..+...|+. .+....|...... +-.| -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777778899999998888776542222333 233332 234566733 3333344443321 1111 22334
Q ss_pred HHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhHcCC----CCChhH
Q 009143 440 NALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITY--TELIKGHCARGNMKEAEEVFAKIQTLGL----AIDHIP 513 (542)
Q Consensus 440 ~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~ 513 (542)
..++.++ +...+...++..-++--......|-...+ ..|+......|++++|...++++..... .++...
T Consensus 584 ~~ll~~~----~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 584 AQLLRAW----LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHH----HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4444432 11122223333322222222222222222 3678888899999999999999887422 223222
Q ss_pred HHHHHHH--HHhcCChhHHHHHHHHHh
Q 009143 514 FRILKKR--YRRMKESDKARDIHQKWL 538 (542)
Q Consensus 514 ~~~l~~~--~~~~g~~~~A~~~~~~~l 538 (542)
-...+.. ...+|+.++|.....+-.
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 2223322 346788888887777643
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.18 E-value=3.7 Score=36.13 Aligned_cols=95 Identities=21% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLA--DDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (542)
..+......+...+.+..+...+..... ... .....+......+...++...+.+.+.........+ ......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 134 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLP----NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEAL 134 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHH
Confidence 3444444445555555555555544443 111 334444444455555555555555555555432111 111111
Q ss_pred HHH-HHHhCCCHHHHHHHHHHHH
Q 009143 302 LIN-GFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 302 li~-~~~~~~~~~~A~~~~~~~~ 323 (542)
... .+...|+++.|...+.+..
T Consensus 135 ~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 135 LALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 112 4455555555555555553
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=3.8 Score=35.97 Aligned_cols=206 Identities=14% Similarity=0.031 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
.|.....+|....++++|...+.+..+-.. .+... +-....++.|.-+.+++... +--+..|+.-..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yE----nnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYE----NNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH----hcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 344555666677777777777766654221 11111 11122334444444444432 112233444555
Q ss_pred HHHhCCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 009143 305 GFCLNGDISSAFAYFCQMLKR--GFLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~--~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (542)
.|...|..+.|-..+++.-+. ++.|+. ..|..-+......++...|..+ +..+-..+.+..
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhH
Confidence 666666666665555544321 122321 1222222222222222222222 233334455555
Q ss_pred CHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhhccccc
Q 009143 381 DIVKAREFLLSMLEK----SVVPEP-HIWNVIIDGYGRCGDLSNAFSIRDLMLSFG---VSSNVFTFNALILAETRGASC 452 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~ 452 (542)
.+++|-..+.+-... .-.++. ..|-..|-.|.-..++..|.+.++.--+.+ -.-+..+...||.+|
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay------ 238 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY------ 238 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh------
Confidence 555554444332211 111111 234455555666678888888887754422 123446666777653
Q ss_pred ccCChHHHHHHH
Q 009143 453 NLGHIHLALQLY 464 (542)
Q Consensus 453 ~~g~~~~A~~~~ 464 (542)
..|+.+++.+++
T Consensus 239 d~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 DEGDIEEIKKVL 250 (308)
T ss_pred ccCCHHHHHHHH
Confidence 457777665554
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.06 E-value=2.7 Score=34.06 Aligned_cols=84 Identities=10% Similarity=0.023 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009143 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG 345 (542)
Q Consensus 266 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 345 (542)
.++..+.+.+........++.+...+ ..+....+.++..|++.+ ..+.++.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555544 244555555555555442 2223333331 122333344555555555
Q ss_pred CHHHHHHHHHHH
Q 009143 346 KLDEASHFYGVL 357 (542)
Q Consensus 346 ~~~~A~~~~~~~ 357 (542)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=8.6 Score=39.58 Aligned_cols=246 Identities=15% Similarity=0.075 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHH-----HHHcCChhhHHHHHHHHHH-------CCCCCChHHHHHHHHHHHhc
Q 009143 169 LEKADHVIREMSEMRPSPNCATYNAFITG-----YCRVNELDKALHLFSTMAN-------NGIRPNRVTHNILVHALCKK 236 (542)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~ 236 (542)
...|.+.++...+.|. ......+..+ +....+.+.|+.+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4577888888776553 2222222222 3455788899999988866 44 334556666777664
Q ss_pred C-----ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--h
Q 009143 237 G-----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC--L 308 (542)
Q Consensus 237 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~ 308 (542)
. +.+.|..++....+.+. ++.......+..... ..+...|.++|....+.|. +...-+-.++.... .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 3 56678889988888776 555544333333222 3467889999999888873 22222222222111 2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHH---Hh----cC
Q 009143 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTII-QGL---CI----HG 380 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~---~~----~g 380 (542)
..+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|.+. ..+-...+ ... .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhcccccccccccc
Confidence 347788899999888887 3332222333334444 77777777776666655332 11111111 111 00 12
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhCC
Q 009143 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC----GDLSNAFSIRDLMLSFG 431 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~ 431 (542)
+.+.+...+.+....| +......+.+.|... .+++.|...+......+
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 4455666666655543 445555555554432 34666666666665543
No 274
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.96 E-value=9.3 Score=39.96 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC----CCCChhhHHHH-HHHHHHcCChhHHHHHHHHHhhCC---CCCCHHhHHH
Q 009143 122 VAVIRDLCLGGKIGTALWLRRKMIQKG----TVPDVLTHNYL-VNELCKIGDLEKADHVIREMSEMR---PSPNCATYNA 193 (542)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ 193 (542)
..++..+.+.+... |...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+...- ..|...++-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 34556666666555 888888877641 11222333333 333334478998988888876532 2344555555
Q ss_pred HHHHHHH--cCChhhHHHHHHHHHHCCC---------CCChHHHHHHHHHHH--hcCChhHHHHHHHHH
Q 009143 194 FITGYCR--VNELDKALHLFSTMANNGI---------RPNRVTHNILVHALC--KKGLLGDAVKFLGEV 249 (542)
Q Consensus 194 li~~~~~--~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~ 249 (542)
++.+... .+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...++++
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555443 4556777777777633211 234556666666555 566666666555544
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.85 E-value=2.6 Score=33.12 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF 327 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 327 (542)
...++...+.|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333444455555555555555554322 45555555555555555555555555555555553
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.78 E-value=5.7 Score=36.91 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC--
Q 009143 348 DEASHFYGVLSKTGVAPDQISYKTIIQGLCI--HG----DIVKAREFLLSMLEKSV---VPEPHIWNVIIDGYGRCGD-- 416 (542)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 416 (542)
++...+++.+.+.|+.-+..+|-+..-.... .. ...+|..+++.|++..+ .++-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3456677888888887766555443322222 12 35678888888887653 2344555555444 3333
Q ss_pred --hHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009143 417 --LSNAFSIRDLMLSFGVSSNVF-TFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 486 (542)
Q Consensus 417 --~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 486 (542)
.+.+..+|+.+.+.|+..+.. .+.+-+-++... - ......++.++++.+.+.|+++....|..++-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~-~-~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEG-D-DQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccc-c-chHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 355667788888888776542 333333332111 1 1111557788888888888888887776655433
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.76 E-value=2.7 Score=33.03 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=23.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCC
Q 009143 453 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 507 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 507 (542)
..|+-+.-.++..++.+.+ .+++...-.+..+|.+.|+..++.+++.++.+.|+
T Consensus 98 ~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3345555555555544321 34444444555555555555555555555555543
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.69 E-value=0.97 Score=41.03 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 009143 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK-----RGFLPDVITYNT 336 (542)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 336 (542)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455566666666677777777777766665 55666677777777777777777777766654 356666555444
Q ss_pred HHHH
Q 009143 337 LLNC 340 (542)
Q Consensus 337 li~~ 340 (542)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.55 E-value=0.2 Score=28.74 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 512 IPFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
.+|..+..+|...|++++|++.|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356666677777777777777777776654
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.51 E-value=1 Score=40.92 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 009143 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ-----KNIQTDIV 297 (542)
Q Consensus 223 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 297 (542)
..++..++..+...|+.+.+.+.++++...++ -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp----~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP----YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 34667788888999999999999999999887 8999999999999999999999999998876 48888887
Q ss_pred HHHHHHHH
Q 009143 298 AYNVLING 305 (542)
Q Consensus 298 ~~~~li~~ 305 (542)
+.......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 77666555
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.46 E-value=4.6 Score=34.82 Aligned_cols=182 Identities=14% Similarity=0.056 Sum_probs=95.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
.|-+.-|.--|.+.+...| .-..+||-|.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|
T Consensus 78 lGL~~LAR~DftQaLai~P----~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LA 152 (297)
T COG4785 78 LGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLA 152 (297)
T ss_pred hhHHHHHhhhhhhhhhcCC----CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhh
Confidence 3444455555666666555 556678888888888888888888888888765333322333222 23346788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
.+-+-+.-+.+ |+...-...+-.--+.-++.+|..-+.+-.+ | .|..-|...|-.|.- |++. ...+++++..-
T Consensus 153 q~d~~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~-~--~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~ 225 (297)
T COG4785 153 QDDLLAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE-K--SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD 225 (297)
T ss_pred HHHHHHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHH-h--ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh
Confidence 77776666553 2211111111111233456666554433222 1 122223222222211 2211 11222332221
Q ss_pred CCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 396 SVVP-------EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 396 ~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
... =..||--+..-+...|+.++|..+|+-.+..
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 1346777788888889999999988887764
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.25 E-value=0.24 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 513 PFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
.|..+...+...|++++|++.|+++++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45566667777777777777777776544
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=13 Score=38.83 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV--LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
....-+..+.+...++.|+.+-+.- +..++. .....-.+.+.+.|++++|..-|-+-... ..|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3455666666767777776654432 222221 12223334445567777776665554321 1121 23444
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 249 (542)
|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 44455555555666666666644 4444455666666666666655555443
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.86 E-value=4.6 Score=33.16 Aligned_cols=53 Identities=17% Similarity=-0.014 Sum_probs=25.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.+.++.+++..++..+.-..| .....-..-...+...|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP----~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP----EFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555555444 22222222333445555666666666655443
No 285
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.69 E-value=15 Score=38.47 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHc
Q 009143 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (542)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (542)
+......+|-.+.++|++++|.++..+.... .......+-..+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4444556677777888888887777444332 223445566666666654
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.61 E-value=27 Score=41.37 Aligned_cols=317 Identities=10% Similarity=0.025 Sum_probs=161.9
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNGI--RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (542)
.+..+-.+.+.+.+|...++.-...-. .....-|..+...|+..+++|....+....... + ....-+-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~------~---sl~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD------P---SLYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC------c---cHHHHHHH
Confidence 444556677788888888877311100 111233444445888888888877766542111 1 12334455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHH
Q 009143 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTL-LNCLCKQGKLDE 349 (542)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~ 349 (542)
....|++..|...|+.+.+.+ ++...+++-++......|.++..+-..+-.... ..+....++.+ +.+--+.+++|.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 667788888888888888775 444667777777777777777777655555443 12333333332 334456667776
Q ss_pred HHHHHHHHHHCCCCCChhhHHH--HHHHHHh--cCCHHHHHHHHHHHHhCCC--------C-CCHHHHHHHHHHHHhcCC
Q 009143 350 ASHFYGVLSKTGVAPDQISYKT--IIQGLCI--HGDIVKAREFLLSMLEKSV--------V-PEPHIWNVIIDGYGRCGD 416 (542)
Q Consensus 350 A~~~~~~~~~~~~~~~~~~~~~--li~~~~~--~g~~~~A~~~~~~~~~~~~--------~-~~~~~~~~li~~~~~~g~ 416 (542)
....+. .. +..+|.. +...+.+ ..+.-.-.+.++.+.+.-+ . .-...|..++..+.-..-
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 665554 11 1122222 2222222 1221111122222222111 1 112334444444322111
Q ss_pred hHHHHHHHHHHHhCCCCCCH------HHHHHHHHHhhcccccccCChHHHHHHHHH-HHhCCCCCC-----HHHHHHHHH
Q 009143 417 LSNAFSIRDLMLSFGVSSNV------FTFNALILAETRGASCNLGHIHLALQLYDE-MLRRGITPD-----IITYTELIK 484 (542)
Q Consensus 417 ~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~-~~~~g~~p~-----~~~~~~li~ 484 (542)
-... +. . .++.++. ..|-.-+.- -....+..+-+--+++ +......|+ ..+|....+
T Consensus 1610 ~~~~-~~---l--~~~s~~~~s~~~sd~W~~Rl~~-----tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAr 1678 (2382)
T KOG0890|consen 1610 ENSI-EE---L--KKVSYDEDSANNSDNWKNRLER-----TQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSAR 1678 (2382)
T ss_pred HHHH-HH---h--hccCccccccccchhHHHHHHH-----hchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 1111 11 1 1112211 111111111 0001111221111221 111111222 367888888
Q ss_pred HHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 485 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
....+|+++.|...+-...+.+ -+..+.-.++.+...|+...|+.++++.++.+
T Consensus 1679 iaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8888999999999888877764 23455567788999999999999999988654
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.58 E-value=1.4 Score=37.33 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE--PHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.+..+...|++.|+.++|.+.+.++.+....+. ...+-.+|....-.+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666555432222 22344455555555566555555554443
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.57 E-value=10 Score=36.39 Aligned_cols=64 Identities=17% Similarity=0.071 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 476 IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI---DHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 476 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
..+|..++..+.+.|+++.|...+.++...+... ++.+.-.-.+.+...|+.++|...+++.++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666666666666666666665532111 233333445556666666666666655543
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.49 E-value=0.16 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=17.9
Q ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 009143 247 GEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (542)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 281 (542)
++.++..| .+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P----~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNP----NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCC----CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444 56666666666666666666554
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.31 E-value=9.5 Score=35.46 Aligned_cols=87 Identities=9% Similarity=0.132 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC-
Q 009143 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCK--KG----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD- 276 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 276 (542)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ....|..+++.|.+..+.-..++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566778888888888777666654333332 11 234566777777766553333444444444333 2222
Q ss_pred ---HHHHHHHHHHHHHCCC
Q 009143 277 ---KFQALALWNDMFQKNI 292 (542)
Q Consensus 277 ---~~~a~~~~~~~~~~~~ 292 (542)
.+.+...|+.+.+.|+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f 174 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGF 174 (297)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 2344445555555443
No 291
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.28 E-value=14 Score=37.19 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 009143 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV--PEPHIWNVI 407 (542)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 407 (542)
+..+|..-+.--.+.|+.+.+.-+|+...-. +..-...|-..+......|+.+-|..++....+-..+ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456666677777788888888888766542 2222344555555555568888787777766654433 222333332
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHH---HHHHHHhCCCCCCHHHHHHH--
Q 009143 408 IDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQ---LYDEMLRRGITPDIITYTEL-- 482 (542)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~---~~~~~~~~g~~p~~~~~~~l-- 482 (542)
+ ....|+++.|..+++.+.+.- |+.......-.. ...+.|..+.+.. ++...... .-+......+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~----~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKIN----WERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYV 444 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHh----HHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHH
Confidence 2 344678888888888887752 554321111110 1335577777763 33322221 1122222222
Q ss_pred --HH-HHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcC
Q 009143 483 --IK-GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK 525 (542)
Q Consensus 483 --i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 525 (542)
.+ .+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22 123367888888888888876 4567777888887776555
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.99 E-value=6.4 Score=32.77 Aligned_cols=101 Identities=18% Similarity=0.278 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHH
Q 009143 387 EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDE 466 (542)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~ 466 (542)
+.++.+.+.++.|+...+..+++.+.+.|++... ..+.+.++-||.......+-.+. .....-.+-|++++.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 4444555566666666666666766666665433 33344444555544443332210 0000112223333333
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 467 MLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 502 (542)
Q Consensus 467 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (542)
+.. .+..+++.+...|++-+|.++....
T Consensus 88 L~~--------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGT--------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhh--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 321 2445566667777777777766554
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.97 E-value=0.41 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 478 TYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999553
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.95 E-value=14 Score=36.46 Aligned_cols=180 Identities=14% Similarity=0.054 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009143 328 LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI 407 (542)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (542)
..|.....+++..+....+..-.+.+..+|...| .+-..|..+++.|... ..++-..+|+++.+.... |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3455566677777777777777777777777754 3566777777777776 446677777777776654 55555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh-CCCCCCHHHHHH
Q 009143 408 IDGYGRCGDLSNAFSIRDLMLSFGVSS-----NVFTFNALILAETRGASCNLGHIHLALQLYDEMLR-RGITPDIITYTE 481 (542)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~ 481 (542)
..-|.+ ++.+.+...|..+...-++. -...|..+... -..+.+....+..++.. .|..--.+.+.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~-------i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL-------IGDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh-------ccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 665555 67777777777766532210 11244445431 12566666666666665 444444455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHH
Q 009143 482 LIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR 520 (542)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 520 (542)
+-.-|....++.+|.+++....++.-+ |...-..++.-
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 666777788888888888876665322 43333344433
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=2.2 Score=38.80 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC---CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh
Q 009143 147 KGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR---PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR 223 (542)
Q Consensus 147 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 223 (542)
.|......+...++..-....+++.++..+-++.... ..|+. +-.+.++.+ -.=++++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 3555566666677776667788888888877765421 11221 112233333 334677888888888889999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
.+++.+++.+.+.+++.+|.++...++....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877554
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.74 E-value=2.9 Score=35.51 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCChhHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD--VLTHNYLVNELCKIGDLEKADHVIREM 179 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (542)
.+..+...|++.|+.+.|++.|.++.+....+. ...+..+|+...-.|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455666666666666666666666655432222 233445555555556655555554444
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.72 E-value=6.9 Score=32.59 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=9.2
Q ss_pred CCCCCCHHhHHHHHHHHHHcCC
Q 009143 182 MRPSPNCATYNAFITGYCRVNE 203 (542)
Q Consensus 182 ~~~~~~~~~~~~li~~~~~~g~ 203 (542)
.+..|+...+..+++.+.+.|+
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.25 E-value=11 Score=33.81 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=29.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
..+.++|+.-|.++++..+....-.-.+.-.++..+.+.|++++....+.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566677777777665542211222334445556666666666666666554
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.21 E-value=0.0069 Score=49.64 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=60.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (542)
.+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 467777788889999999999887765667888899999999998888886666521 1123345666677777
Q ss_pred ChhhHHHHHHHHH
Q 009143 203 ELDKALHLFSTMA 215 (542)
Q Consensus 203 ~~~~A~~~~~~m~ 215 (542)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777777776643
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.17 E-value=0.28 Score=28.33 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009143 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAF 421 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (542)
+++.++..+. +...|+.+...|...|++++|.
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455555544 6777777777777777777764
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.17 E-value=9.3 Score=33.04 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 332 ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
..||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -.|++.-|.+-+...-+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 444544445555555555555555555543222222222222221 235555555444444333
No 302
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.02 E-value=0.5 Score=27.02 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 513 PFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
+|..+...|...|+.++|.+.|++.++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566677777777777777777776543
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.75 E-value=20 Score=36.10 Aligned_cols=358 Identities=13% Similarity=0.057 Sum_probs=201.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCChhHHHHHHHHHhhCCCC--CCHHhHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELC-KIGDLEKADHVIREMSEMRPS--PNCATYNAFIT 196 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~ 196 (542)
-|-.....=.+-|..+.+..+|++-++. ++-+...|.....-+. ..|+.+...+.|+........ .+...|...|.
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 4566666666778899999999998874 5556666766554443 457788888888887653211 34567888888
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHH---hc------CChhHHHHHHHHHHhC---------------
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC---KK------GLLGDAVKFLGEVLAD--------------- 252 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~------g~~~~a~~~~~~~~~~--------------- 252 (542)
.-..++++.....++++..+. | ...|+....-|. +. ...+++.++-......
T Consensus 160 ~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 888889999999999998864 2 122222222111 11 2233333332222210
Q ss_pred -----CCCCCCCcHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHC---C----CCCCHHHHHHHHHHHHhCCCHH
Q 009143 253 -----DDGKATSDVITSTILMD-------SYFKNGDKFQALALWNDMFQK---N----IQTDIVAYNVLINGFCLNGDIS 313 (542)
Q Consensus 253 -----~~~~~~~~~~~~~~l~~-------~~~~~g~~~~a~~~~~~~~~~---~----~~~~~~~~~~li~~~~~~~~~~ 313 (542)
.. ..+.-....+.+.. .+.......+....|+.-... . .+++..+|..-+..-.+.|+.+
T Consensus 236 ~v~~~~~-~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~ 314 (577)
T KOG1258|consen 236 GVKDSTD-PSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFS 314 (577)
T ss_pred HHhhccC-ccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHH
Confidence 00 00000011111111 111111222222223332221 0 1235567888888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 009143 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC-IHGDIVKAREFLLSM 392 (542)
Q Consensus 314 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 392 (542)
.+.-+|+...-- +..=...|-..+.-....|+.+.|..++....+-.++ +......+-..+. ..|+++.|..+++.+
T Consensus 315 ~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 315 RVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 999999887642 1222334444444445558888888887766554332 2222222223333 357999999999999
Q ss_pred HhCCCCCCHH-HHHHHHHHHHhcCChHHHH---HHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHH
Q 009143 393 LEKSVVPEPH-IWNVIIDGYGRCGDLSNAF---SIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEML 468 (542)
Q Consensus 393 ~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~ 468 (542)
.+.- |+.. .-..-+....+.|+.+.+. .++.........+.. ...+..-++.--+.-.++.+.|..++.++.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i--~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGI--LEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcch--hHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 8764 4432 2222344456778888877 444444432222222 111211111112444589999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC
Q 009143 469 RRGITPDIITYTELIKGHCARG 490 (542)
Q Consensus 469 ~~g~~p~~~~~~~li~~~~~~g 490 (542)
+. ++++...|..+++.....+
T Consensus 469 ~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 469 DI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hc-CCccHHHHHHHHHHHHhCC
Confidence 86 4566778888888776655
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.53 E-value=8.7 Score=31.61 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVA-YNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.+.++.+++..+++.+.-. .|.... -..-...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445556666665555543 222211 111222344556666666666665443
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.43 E-value=25 Score=36.76 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHc
Q 009143 297 VAYNVLINGFCLN---GDISSAFAYFCQMLKR 325 (542)
Q Consensus 297 ~~~~~li~~~~~~---~~~~~A~~~~~~~~~~ 325 (542)
.-+..||..|.+. .+..+|.++|-.+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 4567777777663 5677788877766554
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.18 E-value=3.6 Score=34.96 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=54.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 009143 408 IDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGH 486 (542)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~ 486 (542)
..-+.+.|++++|..-|.+.++. +++...-..+++..-...++.+.+.++.|+.-..+.++.+ |+. ....--..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 34477778888888888877775 2333333333332222223556677777777776666643 221 2222234466
Q ss_pred HhcCCHHHHHHHHHHHhHc
Q 009143 487 CARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~ 505 (542)
-+..++++|++=+.++.+.
T Consensus 179 ek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh
Confidence 6677777777777777665
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.05 E-value=18 Score=34.60 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 294 TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLP---DVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
....+|..++..+.+.|.++.|...+.++...+... ++.....-++..-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667777888888888888888888877643211 333444445566677888888887777666
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.94 E-value=7 Score=39.12 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=49.5
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
.+.|+.+.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD------------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc------------hhhhhhhhhhcCChh
Confidence 34555565555544332 344555666666666666666665554422 233444455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 321 (542)
....+-....+.| ..|.. .-+|...|+++++.+++..
T Consensus 710 ~l~~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHh
Confidence 4444444444444 22221 1234445666666665544
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=4.6 Score=36.91 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 009143 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG---FLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ 366 (542)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 366 (542)
.|.+....+...++..-....+++.+...+-++.... ..|+... .++++.+ -.-++++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 3445555555555555555666777777666665431 1111111 1122222 223566777777666677777777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
.+++.+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777766666544
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.61 E-value=2.7 Score=40.63 Aligned_cols=119 Identities=17% Similarity=0.121 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCC
Q 009143 378 IHGDIVKAREFLLSMLEKS-VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGH 456 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~ 456 (542)
..|+...|-+-+...+... ..|+.....+ ..+...|+++.+...+...... +.....+..+++.. ..+.|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~-----~~~l~r 372 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRS-----LHGLAR 372 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHh-----hhchhh
Confidence 4566666654444444332 2333333333 3345567777777666554432 23344555555554 455677
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 457 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
+++|...-+.|....++ ++.........--..|-++++...|++....
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 77777777777665444 3333332233333456667777777766654
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.38 E-value=10 Score=30.70 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=23.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.++.+++..++..+.-..|.. +...+ .-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~--~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNL--KELDM--FDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCc--cccch--hHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555554444311 22222 2223344555555555555555543
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=9.3 Score=38.32 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=51.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009143 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS 313 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 313 (542)
.+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|....+ |..|+-.+...|+.+
T Consensus 648 l~lgrl~iA~~la~e~---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA---------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhcCcHHHHHHHHHhh---------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 4556666666655544 4455566666666666666666666655442 334444455555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (542)
Q Consensus 314 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (542)
....+-....+.|. .+ ...-+|...|+++++.+++.
T Consensus 710 ~l~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 710 GLAVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHH
Confidence 44444444444431 11 22234445566666655553
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.01 E-value=0.95 Score=27.22 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 512 IPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
.+++.+...|...|++++|.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666643
No 314
>PRK09687 putative lyase; Provisional
Probab=88.88 E-value=19 Score=33.22 Aligned_cols=234 Identities=11% Similarity=0.048 Sum_probs=127.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI----SSAFAYFCQMLKRGFLPDVITY 334 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~~~~~~~~p~~~~~ 334 (542)
++..+....+..+...|.. ++...+..+.. .+|...-...+.++...|+. +++...+..+... .++....
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4444555555555555542 23333333333 34555555566666666653 4566666666443 4555555
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009143 335 NTLLNCLCKQGKL-----DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (542)
Q Consensus 335 ~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (542)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ .++...+..+++. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5566655554321 222333322222 2355666667777777776 4666666666653 34455555555
Q ss_pred HHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009143 410 GYGRCG-DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 488 (542)
Q Consensus 410 ~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 488 (542)
++.+.+ +.+.+...+..+.. .++...-...+.+ +.+.|+ ..|...+-+..+.+ + .....+.++..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a-----Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG-----LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH-----HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 555543 24456666666654 3444444444444 445565 45555555555532 2 23456777778
Q ss_pred cCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHH
Q 009143 489 RGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR 522 (542)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 522 (542)
.|.. +|...+..+.+. .||..+-...+.++.
T Consensus 248 ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred cCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7775 677777777763 257666666666554
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.55 E-value=4.9 Score=34.40 Aligned_cols=45 Identities=18% Similarity=0.023 Sum_probs=18.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 280 (542)
..+.+++.+++.++++........++..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444444444332211123444444444444444444433
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.48 E-value=15 Score=31.35 Aligned_cols=93 Identities=15% Similarity=0.064 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009143 409 DGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 488 (542)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 488 (542)
..+...+++++|..-++.... .|....+..++.--........|.+++|+..++.....+. .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 445666777777777766654 2333333333322111124456777777777776665422 22334455677888
Q ss_pred cCCHHHHHHHHHHHhHcC
Q 009143 489 RGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g 506 (542)
.|+-++|..-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 888888888888887764
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.70 E-value=31 Score=34.17 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (542)
|.....+++..+.......-.+.+-.+++..+ .+-..+..++++|... ..+.-..+|+++.+..+ .|++.-..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-----e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 44444555555555555555555555555544 3344555556665555 44555556665555432 22222233
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHH
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKRGFLP--D---VITYNTLLNCLCKQGKLDEASHFYGVLSKT-GVAPDQISYKTIIQG 375 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~ 375 (542)
|...|-+ ++.+.+..+|.++...-++- + ...|..+... -..+.|....+...+... |...-...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3333332 55555555555554432110 0 1122222221 122444444444444332 222223344444455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009143 376 LCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410 (542)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 410 (542)
|....++++|++++..+++.+-+ |...-..++.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 55566666666666666665443 44444444443
No 318
>PRK09687 putative lyase; Provisional
Probab=87.57 E-value=23 Score=32.67 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=59.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh----hHHHHHHHHHhhCCCCCCHHhH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL----EKADHVIREMSEMRPSPNCATY 191 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 191 (542)
+|.......+.++...|. +++...+..+.+. +|...-...+.++.+.|+. +++...+..+.... ++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHH
Confidence 555556666666666665 3334444444432 3555555666666666653 34566665553322 344444
Q ss_pred HHHHHHHHHcCCh-----hhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009143 192 NAFITGYCRVNEL-----DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLA 251 (542)
Q Consensus 192 ~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 251 (542)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.++.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~ 169 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc
Confidence 4444444443221 122222222222 2244444444555555544 344444444444
No 319
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.54 E-value=1.9 Score=24.52 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 477 ITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788899999999999999999998875
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.43 E-value=3.5 Score=38.04 Aligned_cols=85 Identities=20% Similarity=0.156 Sum_probs=35.5
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 198 YCRVNELDKALHLFSTMANNGIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
|.++|++++|++.|.+-... .| |.+++..-..+|.+...+..|+.-...++..+. .-+.+|..-+.+-...|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~----~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK----LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH----HHHHHHHHHHHHHHHHhh
Confidence 44445555555544443332 22 444444444444444444444443333333322 223333333333333344
Q ss_pred HHHHHHHHHHHH
Q 009143 277 KFQALALWNDMF 288 (542)
Q Consensus 277 ~~~a~~~~~~~~ 288 (542)
..+|.+=++..+
T Consensus 181 ~~EAKkD~E~vL 192 (536)
T KOG4648|consen 181 NMEAKKDCETVL 192 (536)
T ss_pred HHHHHHhHHHHH
Confidence 444444444443
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.42 E-value=1.9 Score=24.41 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 477 ITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
..|..+...+...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999998875
No 322
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=47 Score=35.85 Aligned_cols=116 Identities=11% Similarity=0.072 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCCHHHHHH-
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQKN---IQTDIVAYNVLINGFCLNGDI--SSAFAYFCQMLKRGFLPDVITYNT- 336 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~--~~A~~~~~~~~~~~~~p~~~~~~~- 336 (542)
-|..|+..|...|+.++|+++|.+..+.. -..-...+...+..+.+.+.. +-++++-....+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999988632 111122233455555555544 555555444443321111111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 009143 337 -----------LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378 (542)
Q Consensus 337 -----------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 378 (542)
.+-.|......+.+...++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 222455666777788888888776556667777777777764
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.23 E-value=52 Score=36.30 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=42.7
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhH
Q 009143 452 CNLGHIHLALQLYDEMLRRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDK 529 (542)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 529 (542)
..+|++.+|+.+..++.. .-+. .+-..|+.-+...+++-+|.++..+.... | ...+..|++...+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHH
Confidence 344555555555554432 1122 12256777777888888888887776553 2 133445666777777
Q ss_pred HHHHHHH
Q 009143 530 ARDIHQK 536 (542)
Q Consensus 530 A~~~~~~ 536 (542)
|..+...
T Consensus 1045 Alrva~~ 1051 (1265)
T KOG1920|consen 1045 ALRVASK 1051 (1265)
T ss_pred HHHHHHh
Confidence 7765543
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.12 E-value=7.2 Score=33.40 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc---CCCCChhHHHHHHHHHHhcCChhHHH
Q 009143 456 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL---GLAIDHIPFRILKKRYRRMKESDKAR 531 (542)
Q Consensus 456 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~g~~~~A~ 531 (542)
.-+.|.+.|-++...+.--++.....|..-| ...+.++|..++.+..+. +-.+|+..+.+|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566777777777765554555555555444 466788888888877762 33577888888888888888888764
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.43 E-value=1.9 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 476 IITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 476 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998875
No 326
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.18 E-value=37 Score=33.55 Aligned_cols=399 Identities=12% Similarity=0.077 Sum_probs=194.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 009143 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (542)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (542)
+.|+..|...+..+-+.+.+.+.-.+|..|+.. +..|+..++.+.=. |-..-.++.|..+|.+-++..|. +...|-.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR~npd-sp~Lw~e 179 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLRFNPD-SPKLWKE 179 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhhcCCC-ChHHHHH
Confidence 358999999998888888899999999999986 33344443332221 22333489999999988886653 3444433
Q ss_pred HHHHHH----Hc-------C-ChhhH-HHHHHHHHH-CCCCCChHHHHH---H--HHHHHhcCChhHH-HHHHHHHHhCC
Q 009143 194 FITGYC----RV-------N-ELDKA-LHLFSTMAN-NGIRPNRVTHNI---L--VHALCKKGLLGDA-VKFLGEVLADD 253 (542)
Q Consensus 194 li~~~~----~~-------g-~~~~A-~~~~~~m~~-~g~~p~~~~~~~---l--~~~~~~~g~~~~a-~~~~~~~~~~~ 253 (542)
..+.-. +. | +...- .++-+.-.. ....++..+... . ....-......+. ..+.+.+...+
T Consensus 180 yfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~ 259 (568)
T KOG2396|consen 180 YFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKA 259 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 332211 00 0 00000 111000000 001111111000 0 0000000111111 11222333323
Q ss_pred CCCCCCcHHHHHHHHH----HHHh---------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----
Q 009143 254 DGKATSDVITSTILMD----SYFK---------------NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG---- 310 (542)
Q Consensus 254 ~~~~~~~~~~~~~l~~----~~~~---------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 310 (542)
+ .++.++.-+.. .+.+ .-+.+....+|++..+. .|+...|+..|..|...-
T Consensus 260 ~----~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r 333 (568)
T KOG2396|consen 260 P----DNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLR 333 (568)
T ss_pred C----CCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhh
Confidence 3 23333322221 1111 11223344566666543 455566666666554432
Q ss_pred --CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHH
Q 009143 311 --DISSAFAYFCQMLKRG-FLP-DVITYNTLLNCLCKQGKL-DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG-DIVK 384 (542)
Q Consensus 311 --~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 384 (542)
.....+.+++...+.+ ..+ ....|..+.-.++..... +.|..+..+. +..+...|..-+....+.. +++-
T Consensus 334 ~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~ 409 (568)
T KOG2396|consen 334 GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQM 409 (568)
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHHHHHHHHHHhhcchhHH
Confidence 3344455555554432 222 234455555555554433 2333333232 2334455544444444221 2111
Q ss_pred H-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHH-H-HHHHHHHhCCCCCCHHHHHH-HHHHhhcccccccCChHH
Q 009143 385 A-REFLLSMLEKSVVPEPHIWNVIIDGYGRCGD-LSNA-F-SIRDLMLSFGVSSNVFTFNA-LILAETRGASCNLGHIHL 459 (542)
Q Consensus 385 A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A-~-~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~g~~~~ 459 (542)
- .+++......-..+....|+... .|+ .... . .++..... -..|+..|+.. ++.. +...|...+
T Consensus 410 ~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s-~~~~~~~tl~s~~l~~-----~~e~~~~~~ 478 (568)
T KOG2396|consen 410 LFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS-VIGADSVTLKSKYLDW-----AYESGGYKK 478 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH-hcCCceeehhHHHHHH-----HHHhcchHH
Confidence 1 12222222221222333344433 122 1111 1 11222222 23455555433 3332 556789999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhH-cCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 009143 460 ALQLYDEMLRRGITPDIITYTELIKGHC--ARGNMKEAEEVFAKIQT-LGLAIDHIPFRILKKRYRRMKESDKARDIHQK 536 (542)
Q Consensus 460 A~~~~~~~~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (542)
|.+.+..+... .+|+...|..+|..-. ..-+...+.++++.|.. .| -|+..|...+.--...|..+.+-.++.+
T Consensus 479 ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 479 ARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHH
Confidence 99999999886 3567788887775432 23448888999999887 56 5888888888777788999988888887
Q ss_pred Hhh
Q 009143 537 WLL 539 (542)
Q Consensus 537 ~l~ 539 (542)
++.
T Consensus 556 a~k 558 (568)
T KOG2396|consen 556 AMK 558 (568)
T ss_pred HHH
Confidence 753
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.42 E-value=20 Score=30.65 Aligned_cols=19 Identities=42% Similarity=0.485 Sum_probs=8.8
Q ss_pred HHHcCChhHHHHHHHHHhh
Q 009143 163 LCKIGDLEKADHVIREMSE 181 (542)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~ 181 (542)
+.+.|++++|..-|.+.++
T Consensus 105 ~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhhcccHHHHHHHHHHHHH
Confidence 4444444444444444444
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.48 E-value=32 Score=31.38 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
+++.....|..+|.+.+|.++.++....+ +.+...+-.|+..+...|+--.+...++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445556666777777777777776665 5666667777777777777666666666554
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.44 E-value=20 Score=30.19 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 313 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (542)
++|.+.|++..+. .|+...|..-+... ++|-+++.++.+.+
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 4444444444443 56666666655544 23455555555543
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.41 E-value=9 Score=28.28 Aligned_cols=64 Identities=5% Similarity=0.039 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHH
Q 009143 456 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR 520 (542)
Q Consensus 456 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 520 (542)
+.-++.+-+..+....+.|++....+.+++|.+.+++.-|.++++-.+... ..+...|..++.-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 344556666666677788899888899999999999999999998777431 1234456655543
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.98 E-value=7 Score=36.16 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=68.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
+-|.+.|.+++|+..+...+...+ .+.+++..-..+|.+...+..|..=....+..+ ..-...|..-+.+-...|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P----~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP----HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC----CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 557899999999999999988776 688999999999999998888877666666443 223344555555555566
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 009143 311 DISSAFAYFCQMLKRGFLPD 330 (542)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~p~ 330 (542)
+..+|.+-++..++. .|+
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 777777777666664 555
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.94 E-value=8.3 Score=28.77 Aligned_cols=61 Identities=5% Similarity=0.053 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHH
Q 009143 459 LALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR 520 (542)
Q Consensus 459 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 520 (542)
+..+-+..+....+.|++....+.+++|.+.+++.-|.++++-.+.. ..+....|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45555666666778889988889999999999999999999887764 12223366666543
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.39 E-value=9.7 Score=28.43 Aligned_cols=47 Identities=9% Similarity=0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666666666666666665543
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.13 E-value=12 Score=27.60 Aligned_cols=45 Identities=9% Similarity=0.063 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
++.+-++.+...++.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666665554
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=34 Score=30.17 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=17.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 408 IDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (542)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (542)
..--...+++.+|+++|++.....+..+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3334566778888888887776544433
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.88 E-value=13 Score=32.25 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (542)
Q Consensus 230 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 287 (542)
++.+.+.+.+++++...++-++..+ .+......+++.+|-.|++++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP----tda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP----TDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC----ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444445555555555555555444 44444444555555555555554444433
No 337
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.87 E-value=32 Score=31.24 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 009143 480 TELIKGHCARGNMKEAEEVFAKIQ 503 (542)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~ 503 (542)
.-++..+.+.|.+.+|..++..+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 467888999999999988766443
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.82 E-value=45 Score=30.49 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhH
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK-----TGVAPDQISY 369 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 369 (542)
+++.....|..+|.+.+|.++.++.+..+ +.+...+-.++..+...|+--.+.+-++.+.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45566678888999999999988888764 56777788888899999987777777666543 3665555443
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.79 E-value=78 Score=33.22 Aligned_cols=418 Identities=15% Similarity=0.106 Sum_probs=216.0
Q ss_pred ChhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHHcCChhHHHHHHHHHhhCCC----CC
Q 009143 117 DYRRHVAVIRDLC-LGGKIGTALWLRRKMIQKGTVPDVL-----THNYLVNELCKIGDLEKADHVIREMSEMRP----SP 186 (542)
Q Consensus 117 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~ 186 (542)
+..++..+...+. ...+++.|...+.+....--.++.. ....++..+.+.+... |...+++..+.-- .+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4457778888877 6799999999999876543223322 2245667777777666 8888887655221 12
Q ss_pred CHHhHHHH-HHHHHHcCChhhHHHHHHHHHHCC---CCCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhCC------C
Q 009143 187 NCATYNAF-ITGYCRVNELDKALHLFSTMANNG---IRPNRVTHNILVHALC--KKGLLGDAVKFLGEVLADD------D 254 (542)
Q Consensus 187 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~------~ 254 (542)
-...|..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+++.+.++++.... +
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 23344444 333334479999999998886542 2333445555555444 4565677777777663311 1
Q ss_pred CCCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-------CC-CC----------------------CCHHH----
Q 009143 255 GKATSDVITSTILMDSYF--KNGDKFQALALWNDMFQ-------KN-IQ----------------------TDIVA---- 298 (542)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~-------~~-~~----------------------~~~~~---- 298 (542)
....|...+|..+++.++ ..|+++.+...++++.+ .. .+ +....
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 112356677877777665 46776676666555432 10 00 11111
Q ss_pred -----HHHHHH--HHHhCCCHHHHHHHHHHHHHc--------CCCCC--------HHHHHHHHH---------HHHhcCC
Q 009143 299 -----YNVLIN--GFCLNGDISSAFAYFCQMLKR--------GFLPD--------VITYNTLLN---------CLCKQGK 346 (542)
Q Consensus 299 -----~~~li~--~~~~~~~~~~A~~~~~~~~~~--------~~~p~--------~~~~~~li~---------~~~~~g~ 346 (542)
+.-++. ..+..+..+.|.+++++..+. ...+. ...|...+. ..+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 111222 223345444555555543321 11111 011211111 2234688
Q ss_pred HHHHHHHHHHHHHCCC-CCC-----hhhHHHHHHH--HHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHH--
Q 009143 347 LDEASHFYGVLSKTGV-APD-----QISYKTIIQG--LCIHGDIVKAREFLL--------SMLEKSVVPEPHIWNVII-- 408 (542)
Q Consensus 347 ~~~A~~~~~~~~~~~~-~~~-----~~~~~~li~~--~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li-- 408 (542)
+..|...+..+.+... .|+ ...+...+.+ +...|+.+.|...|. .....+...+...+..+=
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 9999999988876421 111 2233333332 335799999999998 444455544444443321
Q ss_pred HHHH--hcCChHH--HHHHHHHHHhC-CCCC--CHHHHHHHH-HHhhcccccccCChHHHHHHHHHHHh-C--CCCCC--
Q 009143 409 DGYG--RCGDLSN--AFSIRDLMLSF-GVSS--NVFTFNALI-LAETRGASCNLGHIHLALQLYDEMLR-R--GITPD-- 475 (542)
Q Consensus 409 ~~~~--~~g~~~~--A~~~~~~m~~~-~~~p--~~~~~~~ll-~~~~~~~~~~~g~~~~A~~~~~~~~~-~--g~~p~-- 475 (542)
-.+. .....++ +.++++.+... .-.| +..++..++ .++. ....-...++...+.+..+ . ....+
T Consensus 457 ~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 457 IILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN---TFEPFSSNEAKRHLQEALKMANNKLGNSQL 533 (608)
T ss_pred HHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh---hCCccccHHHHHHHHHHHHHHHHhhccchH
Confidence 1122 2222333 66777766542 1122 334444443 2211 1111222344444443332 1 11111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCC-C--ChhHHHH-----HHHHHHhcCChhHHHHHHHHHhh
Q 009143 476 -IITYTELIKGHCARGNMKEAEEVFAKIQTLGLA-I--DHIPFRI-----LKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 476 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
..+++.|...+. .|+..+..+..........+ | ....|.. +.+.+...|+.++|.+...+.-.
T Consensus 534 ~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 534 LAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 123343444444 78888866666554331111 2 3445533 33447788999999998887643
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.78 E-value=31 Score=29.03 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccc
Q 009143 383 VKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG-----------DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGAS 451 (542)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 451 (542)
++|+.-|++.+..++. ...++..+..+|...+ -+++|.+.|+...+ ..|+...|+.-+..
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~------ 122 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM------ 122 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH------
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH------
Confidence 3444444455544433 3456666666665433 24555556666555 47888888877754
Q ss_pred cccCChHHHHHHHHHHHhCCC
Q 009143 452 CNLGHIHLALQLYDEMLRRGI 472 (542)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~~g~ 472 (542)
..+|-++..++.+.+.
T Consensus 123 -----~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 123 -----AAKAPELHMEIHKQGL 138 (186)
T ss_dssp -----HHTHHHHHHHHHHSSS
T ss_pred -----HHhhHHHHHHHHHHHh
Confidence 3456667777766543
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.02 E-value=22 Score=32.16 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 009143 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR- 413 (542)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 413 (542)
..=|.+++..+++.++....-.--+.--+..+.+....|-.|.+.+.+..+.++-..-+...-.-+...|.+++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3347888999999998876654444322233456666777799999999888888877765333345558888777665
Q ss_pred ----cCChHHHHHHH
Q 009143 414 ----CGDLSNAFSIR 424 (542)
Q Consensus 414 ----~g~~~~A~~~~ 424 (542)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 69999998876
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.72 E-value=34 Score=29.82 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 009143 369 YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF--GVSSNVFTFNALILA 445 (542)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~ 445 (542)
.+.-++.+.+.+...+|+.+.++-++.++. |..+-..+++.++-.|++++|..-++-.-+. ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455666777777887777777666554 6666677777788888888887766655442 223445667777654
No 343
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.46 E-value=12 Score=37.52 Aligned_cols=103 Identities=22% Similarity=0.127 Sum_probs=56.1
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (542)
-.|+...|...+............+....|.....+.|...+|..++.+.+.... ....++..+.+++....+++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~----sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS----SEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc----cCchHHHhcchhHHHHhhhHH
Confidence 3466666666655554332222233344455555566666666666666655443 444555666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009143 280 ALALWNDMFQKNIQTDIVAYNVLINGFC 307 (542)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (542)
|++.|++..+.. +.+.+.-+.|...-|
T Consensus 695 a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 666666666554 344555555544444
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.42 E-value=3.2 Score=22.04 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 009143 481 ELIKGHCARGNMKEAEEVF 499 (542)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~ 499 (542)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555544
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.07 E-value=6.3 Score=22.20 Aligned_cols=29 Identities=34% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 477 ITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778889999999999999999998774
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.00 E-value=3.8 Score=22.86 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=11.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhh
Q 009143 517 LKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444555555555554443
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.69 E-value=0.86 Score=37.12 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=49.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 238 (542)
++..+.+.+.+....+.++.+...+...+....+.++..|++.++.++..++++.. +..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666667777777777777776665556777788888888887777777776621 11222344555555555
Q ss_pred hhHHHHHHH
Q 009143 239 LGDAVKFLG 247 (542)
Q Consensus 239 ~~~a~~~~~ 247 (542)
++++.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.64 E-value=24 Score=31.99 Aligned_cols=89 Identities=11% Similarity=-0.002 Sum_probs=54.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH--
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR-- 200 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 200 (542)
.=|.+++..|++.+++...-+--+..-+-.+.+...-|-.|.+.|++..+.++-...+...-..+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346778888888877754433333222223445556666678888888777777666653333334456666655554
Q ss_pred ---cCChhhHHHHH
Q 009143 201 ---VNELDKALHLF 211 (542)
Q Consensus 201 ---~g~~~~A~~~~ 211 (542)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 47777777766
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.37 E-value=35 Score=27.75 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 272 FKNGDKFQALALWNDMFQKNI-QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
...++.+++..+++.|.-... .+...++. ...+...|++++|+.+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 335666677666666654420 11222222 23345667777777777776655
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.34 E-value=35 Score=31.00 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=71.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH-------HHHHHHHHHcCChhHHHHHHHHHhh---CCCC-CCHHhH
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTH-------NYLVNELCKIGDLEKADHVIREMSE---MRPS-PNCATY 191 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~~ 191 (542)
-+.+-..+.+++++|+..+.+++..|+..+..+. ..+...|...|+...-.+......+ .-.+ ......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3555667889999999999999999887665544 4577788888887765544433221 1111 123344
Q ss_pred HHHHHHHHHc-CChhhHHHHHHHHHHCCCCCCh-----HHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 192 NAFITGYCRV-NELDKALHLFSTMANNGIRPNR-----VTHNILVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 192 ~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~ 249 (542)
.+|+..+... ..++.-+.+.....++..+-+. ..-.-++..+.+.|++.+|+.+...+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4455444333 3344445554444433211111 11133556666777777776655443
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.96 E-value=26 Score=26.12 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=22.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG 326 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 326 (542)
..+...|++++|..+.+.+. .||...|.+|.. .+.|..+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34444455555544444431 444444444432 23344444444444444433
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.94 E-value=24 Score=26.30 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHH
Q 009143 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTH 226 (542)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 226 (542)
.+...|++++|..+.+.+ +.||...|-.|-.. +.|--+++..-+.+|...| .|...+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 355678888886665554 56777777666554 5666666666666666655 3343333
No 353
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.59 E-value=3.3 Score=23.08 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=9.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhh
Q 009143 160 VNELCKIGDLEKADHVIREMSE 181 (542)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~ 181 (542)
..++.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 354
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.38 E-value=66 Score=30.44 Aligned_cols=187 Identities=11% Similarity=0.064 Sum_probs=96.0
Q ss_pred cccCCCCchHHHHHHHHHHhHHHHhhhHHHhhhccCcccCCCCCccccccccccccchhhhhhhhhhccccCcCCCCchh
Q 009143 6 ACGESSSPVHIQILRFLYQTFDSIKLNVARIFSNSRTCSDDDNLPCTLNDIMSYVGDQCRSKTRHWFSNKDSDNEGNPQA 85 (542)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (542)
+|+++.|+..+.+...++++-....++.+-+..=..+|+.....-..++-+ ...-..... .++|..
T Consensus 12 ~~~~~~~~~~~eL~~~i~~~~ell~k~~~~~~~~L~~ld~~~hSlgml~~l-------------~~~f~~~~~-~~~~~~ 77 (422)
T KOG2582|consen 12 LCSLSHSSNVGELAELIVKSKELLAKNSSDLDAVLLHLDPQVHSLGMLAVL-------------KVKFHTPSA-NPDPET 77 (422)
T ss_pred HHhhhcCCcHHHHHHHHHhhHHHHHhCcchHHHHHHhcCccccchhhhhhh-------------hccccCccc-CCCHHH
Confidence 588888888888888888887777777555554445543332222211111 000011111 355666
Q ss_pred HHHHHHHHHH-hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHH
Q 009143 86 VFNALDLILK-ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLV 160 (542)
Q Consensus 86 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li 160 (542)
....+..+.. ++-++++.+-..+- .+.+.+-.++.+.+.+...+++..+.+.. ..|.. .....++
T Consensus 78 li~~~~~FV~~~n~eqlr~as~~f~---------~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~ 147 (422)
T KOG2582|consen 78 LIELLNDFVDENNGEQLRLASEIFF---------PLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLL 147 (422)
T ss_pred HHHHHHHHHHhcChHHHhhHHHHHH---------HHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHH
Confidence 6666666653 23344433333321 24566777777777777766666555543 22222 2334466
Q ss_pred HHHHHcCChhHHHHHHHHHh----hCCCCCCHHhH---HHH-HHHHHHcCChhhHHHHHHHHHH
Q 009143 161 NELCKIGDLEKADHVIREMS----EMRPSPNCATY---NAF-ITGYCRVNELDKALHLFSTMAN 216 (542)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~---~~l-i~~~~~~g~~~~A~~~~~~m~~ 216 (542)
..+.+.+++..+...++.-. ..++..+...+ ... .-.|...++++.|+.+|+...-
T Consensus 148 ~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 148 QLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 66667777665544433211 11111111111 000 1123456788889888888764
No 355
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=52 Score=29.17 Aligned_cols=114 Identities=11% Similarity=-0.056 Sum_probs=61.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHH
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV-AYNVLINGFCLNGDIS 313 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~ 313 (542)
....++.|...+.+.+...+ ....-|+.-+..+.+..+++.+..--.+.++. .||.+ ....+..+......++
T Consensus 22 ~~k~y~~ai~~y~raI~~nP----~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINP----TVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred chhhhchHHHHHHHHHhcCC----CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 34455666666666666554 34455666666666666666666555555544 33332 3334445566666777
Q ss_pred HHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009143 314 SAFAYFCQMLKR----GFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (542)
Q Consensus 314 ~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (542)
+|+..+.+.... .+++.......|..+--..=...+..++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 777777666432 23444445555554433333333444433
No 356
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.62 E-value=1.1e+02 Score=32.40 Aligned_cols=135 Identities=9% Similarity=0.128 Sum_probs=70.4
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhH
Q 009143 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGD 241 (542)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 241 (542)
..+.|++..+.++...+... |-.....|..+..... ...+++....+++-.. -|-. ..-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~-pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDY-PLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPT---LPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCC-CcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHccCHHH
Confidence 45668888887776665322 1122233333322211 2245544444444321 1222 222334445556666666
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009143 242 AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (542)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 311 (542)
..+.+ ...+ .+.........+....|+.++|....+.+-..| ...+...+.++..+.+.|.
T Consensus 118 ~~~~~----~~~p----~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 118 LLAFS----PEKP----KPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHhc----CCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 55522 1112 566666777778888888877777777766555 3445556666666655443
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.33 E-value=5.8 Score=24.46 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=9.4
Q ss_pred HHHHHHcCChhHHHHHHHHHh
Q 009143 160 VNELCKIGDLEKADHVIREMS 180 (542)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~ 180 (542)
..+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.24 E-value=59 Score=32.10 Aligned_cols=304 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChh-------------hHHHHHHHHHHCCCCCChHHHHHHHHH
Q 009143 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD-------------KALHLFSTMANNGIRPNRVTHNILVHA 232 (542)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-------------~A~~~~~~m~~~g~~p~~~~~~~l~~~ 232 (542)
.+.++...+.+..+...|.....+.+|.-...|.+.|... .+...-+.|...........+-...-+
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY--------FKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
|....++..|+++.......-. +-...+....... ..+.+...-+.++.+|...+ ......-+.=..
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e----~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~-~~~~~gn~~~~n 184 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTE----SLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEK-RMKLVGNHIPAN 184 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccccchh
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 009143 305 GFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 384 (542)
...+.+-...|..-+--. .|....-.--+.+|....++..+..-....... -..+......--+.+.-.|++.+
T Consensus 185 n~~kt~s~~aAe~s~~~a-----~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~-a~~s~~~l~LKsq~eY~~gn~~k 258 (696)
T KOG2471|consen 185 NLLKTLSPSAAERSFSTA-----DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI-AQDSSMALLLKSQLEYAHGNHPK 258 (696)
T ss_pred hhcccCCcchhcccchhh-----ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh-cCCCcHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCCHH-----------H
Q 009143 385 AREFLLSMLEKSVVPEPHI--------WNVIIDGYGRCGDLSNAFSIRDLMLS-------FGVSSNVF-----------T 438 (542)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~~-----------~ 438 (542)
|.+++...--..-.-...| ||.|.-.+.+.|.+..+..+|....+ .|++|... +
T Consensus 259 A~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eil 338 (696)
T KOG2471|consen 259 AMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEIL 338 (696)
T ss_pred HHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhH
Q ss_pred HHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009143 439 FNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 487 (542)
Q Consensus 439 ~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 487 (542)
||.-+. +.+.|++-.|.+.|.+.... +..++..|.-|..+|.
T Consensus 339 YNcG~~------~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 339 YNCGLL------YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HhhhHH------HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.59 E-value=5 Score=21.51 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 514 FRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
|..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455555566666666666665544
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.80 E-value=7.7 Score=23.92 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 481 ELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
.|..+|...|+.+.|.+++++....
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3566777777777777777777754
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.36 E-value=93 Score=30.66 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhCCCC
Q 009143 458 HLALQLYDEMLRRGIT 473 (542)
Q Consensus 458 ~~A~~~~~~~~~~g~~ 473 (542)
++..+-++.|....+.
T Consensus 297 ~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 297 EKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHhhccC
Confidence 3455666667664333
No 362
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.12 E-value=39 Score=30.25 Aligned_cols=52 Identities=12% Similarity=-0.046 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHh---CCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh
Q 009143 418 SNAFSIRDLMLS---FGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 418 ~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
+.|.+.|+...+ ..++|...++..++-.++.-.|-..|+.++|.++-++..+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 444445544433 1245555555544444433224455777777666665543
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.74 E-value=96 Score=30.55 Aligned_cols=113 Identities=11% Similarity=0.129 Sum_probs=52.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH---hHHHHHHH
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVL--THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCA---TYNAFITG 197 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~ 197 (542)
+.+...++.|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++ .|...+.. .-.+.+..
T Consensus 37 tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~ 108 (413)
T PHA02875 37 SPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHL 108 (413)
T ss_pred CHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHH
Confidence 3444555667764 344455556555432 11233455566787776644443 23211100 01123334
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCCChHH--HHHHHHHHHhcCChhHHHHHHH
Q 009143 198 YCRVNELDKALHLFSTMANNGIRPNRVT--HNILVHALCKKGLLGDAVKFLG 247 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~ 247 (542)
.+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++
T Consensus 109 A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 109 ATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 4455655 44445555565554321 1233445556676655444443
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.94 E-value=18 Score=36.23 Aligned_cols=151 Identities=18% Similarity=0.096 Sum_probs=97.0
Q ss_pred CCHHhHHHHHHHHHHc--CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHH
Q 009143 186 PNCATYNAFITGYCRV--NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVIT 263 (542)
Q Consensus 186 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 263 (542)
|+..+..+++.-.... ..-+-+-.++-.|.. -+-|-....+...-.+...|+...|.+.+..+....+. ..-+.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~---~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPL---QQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChh---hhccc
Confidence 4555555544433222 122334444444443 23444444444444444578999999988888766552 23334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (542)
...|.+...+.|-..+|..++.+.+... ...+.++..+.+++.-..+++.|++.|++..+.. +.+...-+.|...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 5567777888888888999888887765 5567778888999999999999999999988874 334555555555444
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.40 E-value=68 Score=28.22 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhh
Q 009143 516 ILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
.+.....+.|+.++|.++|.+++.
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Confidence 344445555666666666655543
No 366
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.15 E-value=12 Score=25.21 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 457 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
++...++.+.++.. +-|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555544432 23444445677777778888888777776654
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.11 E-value=20 Score=30.89 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=35.7
Q ss_pred ccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 453 NLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
..++.+......+.+.+ ....|++.+|..++.++...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444444443333 223788888888888888888888888888888774
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.43 E-value=12 Score=26.41 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=30.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHH
Q 009143 453 NLGHIHLALQLYDEMLRRGITP-DI-ITYTELIKGHCARGNMKEAEEV 498 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~~ 498 (542)
.....++|+..|+...+.-..| +. .++..++.+|+..|++.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888887777642222 22 4566777788888888777664
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.12 E-value=64 Score=31.38 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 009143 376 LCIHGDIVKAREFLLSMLEKSVVPEPH--IWNVIIDGYG--RCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 429 (542)
+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33567777777777777765 333333 3344444443 35566666666666554
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.40 E-value=1.8e+02 Score=31.39 Aligned_cols=321 Identities=14% Similarity=0.077 Sum_probs=164.9
Q ss_pred HHHHHHHHHHhCCCC-------CChhhHHHHHHHHHHcC----ChhHHHHHHH----HHhhCCCCCCHHhHHHHHHHHHH
Q 009143 136 TALWLRRKMIQKGTV-------PDVLTHNYLVNELCKIG----DLEKADHVIR----EMSEMRPSPNCATYNAFITGYCR 200 (542)
Q Consensus 136 ~A~~~~~~m~~~g~~-------p~~~~~~~li~~~~~~g----~~~~A~~~~~----~~~~~~~~~~~~~~~~li~~~~~ 200 (542)
....+++++...|+. +.-+.|..++.-+.+.. ...+..++.. ...+.|. |+ -.|.-..+
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~-----eAI~hAla 372 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PS-----EAIDHALA 372 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hH-----HHHHHHHh
Confidence 345667777776643 34455666655544321 1222222222 2223333 22 23444556
Q ss_pred cCChhhHHHHHHHHHHC---------------CCCCChHHH----HHHHHH--HHhcCChhHHHHHHHHHHhCCCCC-CC
Q 009143 201 VNELDKALHLFSTMANN---------------GIRPNRVTH----NILVHA--LCKKGLLGDAVKFLGEVLADDDGK-AT 258 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~~---------------g~~p~~~~~----~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~-~~ 258 (542)
.|+++.|..++++.... +++ +.... -.+..+ .....++++|..++.++...-+.. ..
T Consensus 373 A~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP-~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~ 451 (894)
T COG2909 373 AGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALP-AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS 451 (894)
T ss_pred CCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCC-HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc
Confidence 78888887777765111 122 21111 112222 335788999999988887643310 00
Q ss_pred Cc---HHHHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009143 259 SD---VITSTILM-DSYFKNGDKFQALALWNDMFQK----NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD 330 (542)
Q Consensus 259 ~~---~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~ 330 (542)
+. ...++.+- ......|+++.|.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-.-+
T Consensus 452 ~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 452 RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 11 12333332 2334568889998888877654 2234566778888888889999999998887765432334
Q ss_pred HHHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCC--CC----CChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCC
Q 009143 331 VITYNTLL-----NCLCKQGK--LDEASHFYGVLSKTG--VA----PDQISYKTIIQGLCI-HGDIVKAREFLLSMLEKS 396 (542)
Q Consensus 331 ~~~~~~li-----~~~~~~g~--~~~A~~~~~~~~~~~--~~----~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~ 396 (542)
...+..+. ..+...|+ ..+....+....... -. +-..++..+..++.+ .+...++..-+.--....
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 44333322 23445663 233333343332220 01 122344455555544 112222222222222222
Q ss_pred CCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHhhcccccccCChHHHHHHHHH
Q 009143 397 VVPEPHIW--NVIIDGYGRCGDLSNAFSIRDLMLSFGVS----SNVFTFNALILAETRGASCNLGHIHLALQLYDE 466 (542)
Q Consensus 397 ~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~ 466 (542)
..|-...+ ..|+......|+.++|...++++...... ++...-...+... .....|+.+.+.....+
T Consensus 612 ~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~---lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 612 PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLI---LWLAQGDKELAAEWLLK 684 (894)
T ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHH---HhcccCCHHHHHHHHHh
Confidence 23222223 36778888899999999998888763222 2222222222221 13456787777776665
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.90 E-value=17 Score=24.42 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 491 NMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 491 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
.+++..++++.+... +-|..-.-.++.+|...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666666666553 23555566788999999999999999998854
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.99 E-value=2.1e+02 Score=31.28 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHHcCCh--hHHHHHHHHHhhCCCCCCHHhHHH-
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGT---VPDVLTHNYLVNELCKIGDL--EKADHVIREMSEMRPSPNCATYNA- 193 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~- 193 (542)
-|..|+..|...|+.++|++++.+.....- .--...+-.+++.+.+.+.. +-..+.-.......+......+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 578899999999999999999999887421 11112233455555555544 445554444444333211111111
Q ss_pred -----------HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 009143 194 -----------FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 194 -----------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 235 (542)
.+-.|......+-+..+++.+....-.++..-.+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 233456677778888888888766555566667777776664
No 373
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.66 E-value=26 Score=22.07 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHH
Q 009143 485 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKK 519 (542)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 519 (542)
...+.|-..++..++++|.+.|+..+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34467778888888888888888888888777664
No 374
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.22 E-value=1.8e+02 Score=30.27 Aligned_cols=28 Identities=25% Similarity=0.127 Sum_probs=19.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKM 144 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 144 (542)
.++.-|+ .+..+.-+|.++.|..+++..
T Consensus 147 ~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 147 HDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp GSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred cchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 3466777 567777889999999888443
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.53 E-value=22 Score=30.68 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh
Q 009143 432 VSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 432 ~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
..|+...|..++.. +...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~-----l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALA-----LALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH
Confidence 35555555555554 4445555555555555554
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.88 E-value=78 Score=25.33 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhHcC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 474 PDIITYTELIKGHCARGN---MKEAEEVFAKIQTLG-LAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 474 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
++..+--.+.+++.+..+ .++.+.++++..+.. ..-.....--|.-++.+.|+++++.++.+..++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444444555554332 333444555544311 111122222333345555555555555555544
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.60 E-value=23 Score=25.07 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=8.5
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q 009143 299 YNVLINGFCLNGDISSAFA 317 (542)
Q Consensus 299 ~~~li~~~~~~~~~~~A~~ 317 (542)
+..|+.+|+..|+++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 378
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.58 E-value=1.3e+02 Score=27.62 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009143 277 KFQALALWNDMFQ-KNIQTDIVAYNVLINGFCL-NG-DISSAFAYFCQMLK-RGFLPDVITYNTLLNCLCKQGKLDEASH 352 (542)
Q Consensus 277 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (542)
+.+|+++|+..-. ..+-.|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555552211 1233455555555555544 11 11222222222222 2346667777777888888888888888
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 009143 353 FYGVLSKT-GVAPDQISYKTIIQGLCIHGDIVKAREFL 389 (542)
Q Consensus 353 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 389 (542)
+++..... +...|...|..+|+.....|+..-...+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 77766554 45567777888888888888765444443
No 379
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.80 E-value=1.5e+02 Score=28.02 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---CCCHHHHH
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL---NGDISSAF 316 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~ 316 (542)
+.-+.+++++++.++ .+......++..+.+..+.+...+.|+++.... +-+...|...+..... .-.++...
T Consensus 48 E~klsilerAL~~np----~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 48 ERKLSILERALKHNP----DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 445667777777655 677777778888888888888888888888764 3466677766665544 23455666
Q ss_pred HHHHHHH
Q 009143 317 AYFCQML 323 (542)
Q Consensus 317 ~~~~~~~ 323 (542)
.+|.+..
T Consensus 123 ~~y~~~l 129 (321)
T PF08424_consen 123 DVYEKCL 129 (321)
T ss_pred HHHHHHH
Confidence 6665554
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.81 E-value=71 Score=25.10 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+..+.++.+...++.|++.....-++++.+.+++..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555555666677777777777777777777777777666544
No 381
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.89 E-value=1.6e+02 Score=27.80 Aligned_cols=79 Identities=8% Similarity=-0.078 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh---cCCHHHHH
Q 009143 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK---NGDKFQAL 281 (542)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~ 281 (542)
+.-+.++++..+.+ +.+......++..+.+..+.+...+.+++++...+ .+...|...++.... .-.++...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~----~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP----GSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHhccCcHHHHH
Confidence 44556677766653 23555566677777777777777777777777665 566666666655544 22355555
Q ss_pred HHHHHHH
Q 009143 282 ALWNDMF 288 (542)
Q Consensus 282 ~~~~~~~ 288 (542)
.+|.+..
T Consensus 123 ~~y~~~l 129 (321)
T PF08424_consen 123 DVYEKCL 129 (321)
T ss_pred HHHHHHH
Confidence 5554443
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.78 E-value=1.5e+02 Score=27.37 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHhCC
Q 009143 381 DIVKAREFLLSMLEKS 396 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~~ 396 (542)
+..+|...|...-+.|
T Consensus 206 d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 206 DLKKAFRWYKKAAEQG 221 (292)
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555566665555554
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.45 E-value=48 Score=21.46 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=15.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009143 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN 440 (542)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 440 (542)
+.-++.+.|++++|.+..+.+++ +.|+.....
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 33445555666666665555555 245444333
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.17 E-value=53 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 009143 267 LMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 267 l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
+...+...|+.++|...+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555544
No 385
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.70 E-value=1.4e+02 Score=26.64 Aligned_cols=55 Identities=11% Similarity=-0.084 Sum_probs=23.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 287 (542)
-+-.+.+..+++.+..--...++..+ ..+.....+.........+++|+..+.+.
T Consensus 50 ralchlk~~~~~~v~~dcrralql~~----N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 50 RALCHLKLKHWEPVEEDCRRALQLDP----NLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcCh----HHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33334444444444444444443332 23333333444444444455555444444
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.46 E-value=1.5e+02 Score=26.99 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009143 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (542)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 444 (542)
++.....+...|.+.|++.+|...|-.-.. |+...+..++......|...++ +...-.+++.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~ 150 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ 150 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH
Confidence 556667777777888888777766543211 2222232233333333443333 2222233333
Q ss_pred HhhcccccccCChHHHHHHHHHHHh
Q 009143 445 AETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 445 ~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
|...+++..|...++...+
T Consensus 151 ------yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 151 ------YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ------HHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHhcCHHHHHHHHHHHHH
Confidence 4445777777777766654
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.38 E-value=84 Score=24.73 Aligned_cols=46 Identities=7% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 460 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 460 A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
..+-+..+....+.|++.....-++++.+.+++..|.++|+-.+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455555667788888888888888888888888888777653
No 388
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.26 E-value=3.2e+02 Score=30.64 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=89.6
Q ss_pred HHHcCChhhHHHHHHHHHH-----------------------CCCCCC-----hHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 198 YCRVNELDKALHLFSTMAN-----------------------NGIRPN-----RVTHNILVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~-----------------------~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 249 (542)
|...|+..+|+..|.+... .|-.|. ..-|..+++.+-+.+-.+.+.++-..+
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5566777788877765432 121121 233666778888888888888888877
Q ss_pred HhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH------------HHHH
Q 009143 250 LADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS------------SAFA 317 (542)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------------~A~~ 317 (542)
++.-+...+.-..+++++.+-....|.+-+|...+-.-... ..--.....++-.++..|.++ +...
T Consensus 1010 Ie~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~ 1087 (1480)
T KOG4521|consen 1010 IENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVED 1087 (1480)
T ss_pred HHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHH
Confidence 77644232344567788888888888888877665432211 112234566666777776654 3333
Q ss_pred -HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009143 318 -YFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352 (542)
Q Consensus 318 -~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (542)
+++...+.........|..|-.-+...+++.+|-.
T Consensus 1088 ~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1088 FLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 33333333222233445555555667777776644
No 389
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.83 E-value=2.1e+02 Score=28.39 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=74.1
Q ss_pred HcCChhHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 009143 165 KIGDLEKADHVIREMSE-MRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243 (542)
Q Consensus 165 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 243 (542)
..|+.-.|-+-+...++ ....|+... .........|+++.+.+.+...... +-....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555544433333333 222344333 3334455678888888887776543 3345667778888888888888888
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (542)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 291 (542)
..-.-|+.... .+...........-..|-++++.-.|+++...+
T Consensus 378 s~a~~~l~~ei----e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEI----EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhcccc----CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888877665 444444444444455677788888888876554
No 390
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.81 E-value=61 Score=26.40 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 462 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 462 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
++.+.+.+.|++++..- ..+++.+...++.-.|.++++++.+.++..+..|.-.-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 34455666777776643 356777788877899999999999988777777766777777777654
No 391
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.70 E-value=86 Score=23.86 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=3.5
Q ss_pred HHhcCCHHHH
Q 009143 271 YFKNGDKFQA 280 (542)
Q Consensus 271 ~~~~g~~~~a 280 (542)
+...|++++|
T Consensus 50 LmNrG~Yq~A 59 (116)
T PF09477_consen 50 LMNRGDYQEA 59 (116)
T ss_dssp HHHTT-HHHH
T ss_pred HHhhHHHHHH
Confidence 3333333333
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.57 E-value=1.7e+02 Score=26.78 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (542)
++.....+...|.+.|++.+|+..|-.- +. ++...+..++..+...|...++ +...-..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~---~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra 147 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG---TD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA 147 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS----H----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc---CC----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH
Confidence 5566677777788888887777655321 11 2222222233333333332222 2222222
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+ -.|...++...|...+....+.
T Consensus 148 V-L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 V-LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred H-HHHHHhcCHHHHHHHHHHHHHH
Confidence 2 2345567788787777666544
No 393
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.16 E-value=1e+02 Score=26.18 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhCCCCCCH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCC
Q 009143 457 IHLALQLYDEMLRRGITPDI--IT-----YTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKE 526 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~--~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 526 (542)
++.|+.+|+.+.+.-..|.. .. -...+-.|.+.|.+++|.+++++..+. |+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 45566666666553222211 11 123456788899999999999888763 344444444444444433
No 394
>PRK10941 hypothetical protein; Provisional
Probab=54.69 E-value=1.7e+02 Score=26.78 Aligned_cols=59 Identities=7% Similarity=-0.082 Sum_probs=26.0
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 253 (542)
+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3344444555555555555554431 1122233333334444555555554444444443
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.52 E-value=85 Score=23.14 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=38.3
Q ss_pred cccCChHHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhHc-CCCCChhHHHHHH
Q 009143 452 CNLGHIHLALQLYDEMLR----RGITPD----IITYTELIKGHCARGNMKEAEEVFAKIQTL-GLAIDHIPFRILK 518 (542)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~----~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~ 518 (542)
.+.|++.+|.+.+.+..+ .+..+. ......+.......|++++|...+++.++. .-.-|.......+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 355777777666555554 221111 122334556677789999999999988762 1123444444333
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.71 E-value=1.8e+02 Score=26.72 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=60.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQTDIVAYN-VLINGFCLNGDISSAFAYFCQMLKRGFLPDVI- 332 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~- 332 (542)
.-..++..+..-|++.++.+.+.++.++..+. |.+.|+...- .|.-.|....-.++-++..+.|.++|...+..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 34566777777888888877777766665443 4333432221 12223333344567777777777777544332
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009143 333 ---TYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQ 374 (542)
Q Consensus 333 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 374 (542)
+|.-+- +....++.+|-.++.+....--......|...+.
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVR 235 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHH
Confidence 222211 1233467777777766655422233344444444
No 397
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.58 E-value=2e+02 Score=27.05 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=75.9
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 009143 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQT 294 (542)
Q Consensus 219 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~ 294 (542)
+..|..-++.|... +..++++-.+..++..+..... .-..++.....-||+.|+-+.|++.+++..+. |.+.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~--ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGES--EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 34444444444321 2223334444444444432101 33456777888899999999999888776553 6666
Q ss_pred CHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 295 DIVAYNVLIN-GFCLNGDISSAFAYFCQMLKRGFLPDVI----TYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 295 ~~~~~~~li~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
|+.-+..-+. .|....-+.+-++..+.+.+.|...+.. +|..+- +....++.+|-.+|-+....
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 6655544333 2333334555666666677777554432 232222 23456788888888776554
No 398
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.74 E-value=2.4e+02 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=19.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009143 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (542)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 443 (542)
.++++.|+..+.+|.+.|..|....-..++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467777777777777777666654444433
No 399
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.50 E-value=3.2e+02 Score=29.13 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 009143 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (542)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (542)
..+-.+|..+.-.|++++|-...-.|... +..-|..-+..+...++......+ +-...+..+...|..++..+
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~ 465 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEF 465 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHH
Confidence 35677777777778888887777777653 555666666666666655443221 11111223455677666666
Q ss_pred HH
Q 009143 199 CR 200 (542)
Q Consensus 199 ~~ 200 (542)
..
T Consensus 466 L~ 467 (846)
T KOG2066|consen 466 LA 467 (846)
T ss_pred HH
Confidence 55
No 400
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.48 E-value=35 Score=33.47 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=58.8
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTH-NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (542)
.-+...++++.|..++.+..+. .||...| ..-..++.+.+++..|..=..++++..+ .....|..-..++.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP----~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP----TYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc----hhhheeeeccHHHHhH
Confidence 3445566677777777777663 4544433 3333666677777777766666666554 4444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009143 275 GDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (542)
+.+.+|+..|+..... .|+..-...++.-
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHH
Confidence 6666666666665543 4555544444443
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.47 E-value=2e+02 Score=27.10 Aligned_cols=68 Identities=28% Similarity=0.226 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 009143 371 TIIQGLCIHGDIVKAREFLLSMLEK---SVVPEPHIW--NVIIDGYGRCGDLSNAFSIRDLMLS-----FGVSSNVFT 438 (542)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 438 (542)
.++...-+.++.++|++.++++.+. .-.|+...| ......+...|+..++.+++++..+ .+++|++.+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 3444445566778888888777653 223455544 3445556667777888888777777 556665543
No 402
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.41 E-value=3.2e+02 Score=29.12 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=97.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHc
Q 009143 125 IRDLCLGGKIGTALWLRRKMIQKGTVP---DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (542)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (542)
|+.+.+.+.+++|+.+.+..... .| -...+...|+.+.-.|++++|-...-.|.. .+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 67788889999999877765543 33 345677888888899999999888777753 4566777767666666
Q ss_pred CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 009143 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (542)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 281 (542)
++...... -+.......+...|..++..+.. . -..-|.+.++.-+ .+ .|..+.-.-.
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~----~~~~F~e~i~~Wp----~~--Lys~l~iisa--------- 493 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-S----DVKGFLELIKEWP----GH--LYSVLTIISA--------- 493 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH-H----HHHHHHHHHHhCC----hh--hhhhhHHHhh---------
Confidence 65543332 23322222356677777777765 2 2233334443332 22 2222211111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
.-.+..+. ..+......|+..|...+++..|+.++-.+++
T Consensus 494 -~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 494 -TEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred -cchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11111111 12223334488888888999998888876653
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.63 E-value=79 Score=28.56 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhH----cCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 009143 479 YTELIKGHCARGNMKEAEEVFAKIQT----LGL-AIDHIPFRILKKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 538 (542)
...+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++...+.=+++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34677889999999999999998853 232 3445667778888899999988887766654
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.49 E-value=41 Score=30.96 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=14.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 009143 301 VLINGFCLNGDISSAFAYFCQMLKRGFL 328 (542)
Q Consensus 301 ~li~~~~~~~~~~~A~~~~~~~~~~~~~ 328 (542)
..|....+.||+++|+.++++..+.|+.
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455555555555555555555555543
No 405
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=51.36 E-value=2e+02 Score=26.53 Aligned_cols=116 Identities=10% Similarity=0.114 Sum_probs=56.9
Q ss_pred cCChhhHHHHHHHHHH-CCCCCChHHHHHHHHHHHh-cCC-hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCH
Q 009143 201 VNELDKALHLFSTMAN-NGIRPNRVTHNILVHALCK-KGL-LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~-~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (542)
+..+.+|+.+|+...- ..+--|..+...+++.... .+. ...--++.+-+....... ++..+....+..+++.+++
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~--l~~~vi~~Il~~L~~~~dW 218 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKS--LTRNVIISILEILAESRDW 218 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccC--CChhHHHHHHHHHHhcccH
Confidence 3345566666663211 1233455555556555544 221 122222333333221112 5555556666666666666
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009143 278 FQALALWNDMFQK-NIQTDIVAYNVLINGFCLNGDISSAFAY 318 (542)
Q Consensus 278 ~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~ 318 (542)
..-.++|+..... +...|...|..+|+.....|+..-...+
T Consensus 219 ~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 219 NKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 6666666655544 3345556666666666666665543333
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.90 E-value=2e+02 Score=28.02 Aligned_cols=57 Identities=11% Similarity=0.030 Sum_probs=41.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHH--cCChhHHHHHHHHHhhC
Q 009143 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVL--THNYLVNELCK--IGDLEKADHVIREMSEM 182 (542)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 182 (542)
+..+...+++..|.++++.+.++ ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556889999999999999987 555544 45556666655 45778898888887653
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.76 E-value=1.4e+02 Score=30.93 Aligned_cols=48 Identities=6% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCChh
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNG--IRPNRVTHNILVHALCKKGLLG 240 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~ 240 (542)
+|+.+|..+|++..+.++++...... -+.-...|+..++.+.+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 67777888888888888877776542 2223456677777777777654
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.28 E-value=1.1e+02 Score=23.28 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 009143 203 ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (542)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 282 (542)
..++|..+.+-+...+.. ...+-.+-+..+.+.|++++| +..-..... ||...|..| +-.+.|-.+++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~----pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCHCY----PDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS------GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccCCC----ccHHHHHHH--HHHhhccHHHHHH
Confidence 455666666666554321 222222333445566666666 222222111 555555444 2345555566666
Q ss_pred HHHHHHHCC
Q 009143 283 LWNDMFQKN 291 (542)
Q Consensus 283 ~~~~~~~~~ 291 (542)
.+.++..+|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 666555544
No 409
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.52 E-value=2e+02 Score=29.93 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=11.5
Q ss_pred hhHHHHHHHH-HHhhHHHHHHHH
Q 009143 84 QAVFNALDLI-LKENLDRLKTMR 105 (542)
Q Consensus 84 ~~~~~~l~~~-~~~~~~~~~~~~ 105 (542)
+.+++.+..+ +.+..+.+..+.
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555444 455566666655
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.49 E-value=2.6e+02 Score=27.22 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCC--CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHC---------CCCCC
Q 009143 154 LTHNYLVNELCKIGDLEKADHVIREMSEMR--PSPNCATYNAFITGYCRVNELDKALHLFSTMANN---------GIRPN 222 (542)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 222 (542)
..+.-+.+.|..+|+++.|.+.+-+..+.- .+..+..|-.+|..-.-.|+|.+...+..+.... -+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 345668888999999999999988865421 1123445666666667778888877777776553 12223
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 223 RVTHNILVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 223 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 249 (542)
...+..+..... +++..|.+.|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 333444443333 3566665555443
No 411
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.49 E-value=2.6e+02 Score=27.22 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK---------NIQT 294 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~ 294 (542)
..+.-+...|...|+++.|.+.+.++..--. .....+..|..+|..-.-.|++........+.... .+++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT-s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCT-SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhc-chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3455666777777777777777777443221 11133345555666666666666665555555432 1233
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009143 295 DIVAYNVLINGFCLNGDISSAFAYFCQ 321 (542)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~A~~~~~~ 321 (542)
-...+..|..... +++..|...|-.
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~ 254 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLL 254 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 3444444444333 366666555543
No 412
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.14 E-value=2.2e+02 Score=26.31 Aligned_cols=59 Identities=20% Similarity=0.153 Sum_probs=31.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHhHcCCCCChhHHH
Q 009143 453 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG---------------NMKEAEEVFAKIQTLGLAIDHIPFR 515 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~~~~~~~~ 515 (542)
-..+.++|...|++..+.|. ......+. .+...| +...|...+......|.........
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 34466677777776666653 21111222 333333 6667777777777666554444444
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.80 E-value=6e+02 Score=31.27 Aligned_cols=152 Identities=10% Similarity=0.062 Sum_probs=101.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCC--CCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 009143 158 YLVNELCKIGDLEKADHVIREMSEMRP--SPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 235 (542)
.+..+-.++|.+.+|.-.++.-..... ......|..+...|...+++|....+...-.. .|+ ...-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 455667788999999998888411100 11233455556699999999999888775221 222 2234455678
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhCCCHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL-INGFCLNGDISS 314 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~ 314 (542)
.|++..|...|+.+.+.++ +....++-++......|.++...-..+-..... .+....++.+ +.+--+.++++.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p----~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP----DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC----ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 8999999999999999887 667788888888888888888887666665442 3333333332 344456677776
Q ss_pred HHHHHH
Q 009143 315 AFAYFC 320 (542)
Q Consensus 315 A~~~~~ 320 (542)
....+.
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 666554
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.78 E-value=1.3e+02 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=11.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCC
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRP 184 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~ 184 (542)
+++.+.+.++.-.|.++++++.+.+|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 33334444333444444444444333
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.41 E-value=1e+02 Score=22.40 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHH
Q 009143 460 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARD 532 (542)
Q Consensus 460 A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 532 (542)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .|. ..|...+.++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhhc
Confidence 45667777776643 33333333333336688899999988887 543 256788888888887766654
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.25 E-value=35 Score=31.39 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHH
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI 228 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (542)
-|+..|....+.|++++|+.++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466788888888888888888888888876644444443
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.17 E-value=1e+02 Score=26.21 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhC
Q 009143 382 IVKAREFLLSMLEK 395 (542)
Q Consensus 382 ~~~A~~~~~~~~~~ 395 (542)
.+.|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555543
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.57 E-value=1.1e+02 Score=22.32 Aligned_cols=36 Identities=8% Similarity=0.278 Sum_probs=17.6
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChh
Q 009143 165 KIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (542)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (542)
..|+.+.|.+++..+. .|+ ..|..++.++-..|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchh
Confidence 3455555555555554 332 23445555555554433
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.27 E-value=1.2e+02 Score=31.30 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=58.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCChh------HHHHHHHHHhhCCCCCCHHhHHHH
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQK--GTVPDVLTHNYLVNELCKIGDLE------KADHVIREMSEMRPSPNCATYNAF 194 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 194 (542)
+|+.+|..+|++.++.++++..... |-+.=...+|..++...+.|.++ .|.++++... ..-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999998865 32333456778888888888765 3444444443 34567788877
Q ss_pred HHHHHHcCChhhHHHHHHHHH
Q 009143 195 ITGYCRVNELDKALHLFSTMA 215 (542)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~ 215 (542)
+.+-...-.-.-.+-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776554333333333444433
No 420
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.21 E-value=1.5e+02 Score=23.82 Aligned_cols=69 Identities=10% Similarity=0.117 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 220 RPNRVTHNILVHALCKKGL---LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 220 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.++..+-..+..++.++.+ ..+.+.+++++.+..+.. .......-|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3455555555556655543 445566777776532212 23333344555667777777777777776655
No 421
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.15 E-value=3e+02 Score=27.24 Aligned_cols=121 Identities=17% Similarity=0.051 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHC---CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009143 276 DKFQALALWNDMFQK---NI-QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (542)
Q Consensus 276 ~~~~a~~~~~~~~~~---~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (542)
..++...++...... ++ ..+......++... .|+...++.+++.+...+... ..+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHH
Confidence 356666677665432 33 44555555554432 678888877777765431111 122222
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009143 352 HFYGVLSKTGVAPDQISYKTIIQGLCI---HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG 415 (542)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 415 (542)
.++...... ...+......++.++.+ ..+.+.|+..+.+|++.|..|....-..++.++...|
T Consensus 214 ~~~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 214 EALQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 222221111 11122234445555544 4789999999999999887766555555555544443
No 422
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.08 E-value=48 Score=32.59 Aligned_cols=102 Identities=15% Similarity=0.028 Sum_probs=50.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 009143 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVI-TYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD-QISYKTIIQGLCIHGD 381 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 381 (542)
..+...+.++.|..++.++++. .|+-. .|..-..++.+.+++..|..=+...++.. |+ ...|..-..++.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 4445556667777777766665 44333 33333356666666666666555555532 22 2222222233334444
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009143 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGY 411 (542)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 411 (542)
+.+|...|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 55555555544432 34444444444433
No 423
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.86 E-value=76 Score=21.35 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=4.3
Q ss_pred CChHHHHHHHHH
Q 009143 415 GDLSNAFSIRDL 426 (542)
Q Consensus 415 g~~~~A~~~~~~ 426 (542)
|++=+|-++++.
T Consensus 13 g~f~EaHEvlE~ 24 (62)
T PF03745_consen 13 GDFFEAHEVLEE 24 (62)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHhHHHHHH
Confidence 333333333333
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.54 E-value=73 Score=20.03 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=20.3
Q ss_pred HHcCChhhHHHHHHHHHHCCCCCChHHHHHHHH
Q 009143 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 231 (542)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666666777766666666666555443
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.21 E-value=1.5e+02 Score=23.46 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHHHhHcCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 009143 494 EAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 494 ~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 538 (542)
++.++|+.|.+.|+-- -...|......+...|++++|.++|+..+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 8899999998876543 45667888888999999999999998753
No 426
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.03 E-value=2.5e+02 Score=26.11 Aligned_cols=19 Identities=5% Similarity=0.171 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCChHHH
Q 009143 402 HIWNVIIDGYGRCGDLSNA 420 (542)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A 420 (542)
.+|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3466777777777766544
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.99 E-value=28 Score=27.57 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=19.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009143 129 CLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVN 161 (542)
Q Consensus 129 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 161 (542)
...|.-.+|..+|++|+++|-+|| .|+.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 344556667777777777776665 3455544
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.79 E-value=23 Score=28.09 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=20.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009143 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (542)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (542)
+.|.-.+|.++|+.|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566777788888888777664 5666543
No 429
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.45 E-value=2e+02 Score=27.18 Aligned_cols=92 Identities=15% Similarity=0.031 Sum_probs=51.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (542)
=.+-|.+..++..|...|.+-++........+.+.|+.-..+..-.|++..|+.=....+... +.....|-.=..++..
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHH
Confidence 344566666777777777777666554433445666666666666677776666666655543 2233333333444445
Q ss_pred CCCHHHHHHHHHH
Q 009143 309 NGDISSAFAYFCQ 321 (542)
Q Consensus 309 ~~~~~~A~~~~~~ 321 (542)
..++++|....++
T Consensus 166 Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 166 LERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555544443
No 430
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=44.83 E-value=1.2e+02 Score=22.18 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=8.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLA 251 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~ 251 (542)
+...+...|++++|.+.+-++++
T Consensus 28 lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 28 LADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 431
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.58 E-value=2.9e+02 Score=26.05 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCH----HH
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLE----KSVVPEPHIWNVIID-GYGRCGDLSNAFSIRDLMLSFGVSSNV----FT 438 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~ 438 (542)
........||+.|+-+.|.+.+++..+ .|.+.|+..+..-+. .|....-..+-.+..+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 445556667777777777766665443 355555554433322 223333334444444444454433332 33
Q ss_pred HHHHHHHhhcccccccCChHHHHHHHHHHHh
Q 009143 439 FNALILAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 439 ~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
|-.+- +....++.+|-.+|-+...
T Consensus 186 Y~Gly-------~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY-------CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH-------HHHHHhHHHHHHHHHHHcc
Confidence 33332 2234667777777766654
No 432
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=43.24 E-value=4.5e+02 Score=28.27 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=33.4
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCC
Q 009143 452 CNLGHIHLALQLYDEMLRRGITPDII-TYTELIKGHCARGNMKEAEEVFAKIQTLGLAI 509 (542)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (542)
.-.++++.+..+|+.....|-. +.. .|...++.-...|+...+..++......-..|
T Consensus 473 sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~ 530 (881)
T KOG0128|consen 473 SLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDP 530 (881)
T ss_pred HHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence 3456777777777776664322 222 45555555555677777777666666543344
No 433
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.92 E-value=4.4e+02 Score=27.98 Aligned_cols=337 Identities=11% Similarity=0.001 Sum_probs=160.9
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 009143 160 VNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (542)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 239 (542)
+..+.+.+++....+.+ .. ++.+...-.....+....|+.++|....+.+=..| ...+.....++..+.+.|.+
T Consensus 106 l~~La~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 106 VNELARREDWRGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHccCHHHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence 33445556666554411 11 22455555566677777788777766666654444 22456677777777776665
Q ss_pred hHHH--HHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHH--
Q 009143 240 GDAV--KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK---------NIQTDIVAYNVLINGF-- 306 (542)
Q Consensus 240 ~~a~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~li~~~-- 306 (542)
.... +=+..+...+. ...-..+.... ..+.....+.+..+... .++++...-..++.++
T Consensus 180 t~~d~w~R~~~al~~~~------~~lA~~l~~~l--~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~R 251 (644)
T PRK11619 180 DPLAYLERIRLAMKAGN------TGLVTYLAKQL--PADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFAS 251 (644)
T ss_pred CHHHHHHHHHHHHHCCC------HHHHHHHHHhc--ChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHH
Confidence 5432 22222222222 22222222222 01111111122222111 1112221111112222
Q ss_pred HhCCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 009143 307 CLNGDISSAFAYFCQMLKRG-FLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIV 383 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~~~-~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 383 (542)
....+.+.|...+....... ..+.. .+...+.......+..+++...++...... .+......-+......++++
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHH
Confidence 22345577777777664432 22221 223333333333322556666666543322 23334444455555778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHH----
Q 009143 384 KAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHL---- 459 (542)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~---- 459 (542)
.+...+..|...... ...-.--+..++...|+.++|...|+.+.. .. +|-.++.+- +.|..-.
T Consensus 330 ~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa~------~Lg~~~~~~~~ 396 (644)
T PRK11619 330 GLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAAQ------RLGEEYPLKID 396 (644)
T ss_pred HHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHHH------HcCCCCCCCCC
Confidence 887777777543222 333444566776778888888888888743 12 344444321 1121100
Q ss_pred -HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 009143 460 -ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQ 535 (542)
Q Consensus 460 -A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (542)
.-..-..+. -.| -..-+..+...|+..+|...+..+... .+......+.......|+.+.++....
T Consensus 397 ~~~~~~~~~~---~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 397 KAPKPDSALT---QGP----EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCchhhhhc---cCh----HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 000000000 001 112344566778888888888777764 344455566666667777777765544
No 434
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.50 E-value=2.5e+02 Score=25.08 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=12.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 009143 305 GFCLNGDISSAFAYFCQMLKRG 326 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~ 326 (542)
.-...+++.+|+++|++.....
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666666666665543
No 435
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.37 E-value=2.7e+02 Score=25.37 Aligned_cols=272 Identities=10% Similarity=0.066 Sum_probs=149.1
Q ss_pred CCCCCCHHhHHHHHHHH-HHcCChhhHHHHHHHHHHCCCC---CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--
Q 009143 182 MRPSPNCATYNAFITGY-CRVNELDKALHLFSTMANNGIR---PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG-- 255 (542)
Q Consensus 182 ~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 255 (542)
.+..||+..-|..-..- .+..++++|+.-|++..+.... ....+...++....+.|++++....+.+++.--..
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34556765544432221 2345899999999998775222 12345567889999999999999999999852110
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Q 009143 256 KATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-NIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKRGF--- 327 (542)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--- 327 (542)
...-+....|++++-.....+.+--...++.-++. .-..+. .|-+.|...|...+.+....++++++...--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 00134456777777777777776666666544321 001122 2335677788888888888888887765411
Q ss_pred -CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHH-H
Q 009143 328 -LPD-------VITYNTLLNCLCKQGKLDEASHFYGVLSKT-GVAPDQISYKTIIQ----GLCIHGDIVKAREFLLSM-L 393 (542)
Q Consensus 328 -~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~-~ 393 (542)
..| ...|..=|..|....+-.....+++..... ..-|.+.....+-. .+.+.|++++|..-|-+. .
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 111 134666666777666666666777665432 12333433332221 234567777776433333 2
Q ss_pred ---hCCCCCCHH--HHHHHHHHHHhcCC----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHH
Q 009143 394 ---EKSVVPEPH--IWNVIIDGYGRCGD----LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLY 464 (542)
Q Consensus 394 ---~~~~~~~~~--~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~ 464 (542)
+.|.+.... -|-.|...+.+.|- ..+| .-..-.|.....+.++.+| +.+++.+-.+++
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aY------Q~NdI~eFE~Il 326 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAY------QNNDIIEFERIL 326 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHH------hcccHHHHHHHH
Confidence 223221111 14444555555441 1111 1112245566667777663 334555544444
Q ss_pred HH
Q 009143 465 DE 466 (542)
Q Consensus 465 ~~ 466 (542)
..
T Consensus 327 ~~ 328 (440)
T KOG1464|consen 327 KS 328 (440)
T ss_pred Hh
Confidence 43
No 436
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=41.96 E-value=5.3e+02 Score=28.71 Aligned_cols=95 Identities=17% Similarity=0.088 Sum_probs=61.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHH----HHHH---HHcC---ChhhHHHHHHHHHHCCCCCChHHHHH
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF----ITGY---CRVN---ELDKALHLFSTMANNGIRPNRVTHNI 228 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~---~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (542)
+-+++...+.++.|...++++...-|. ....|.++ |..+ ...| .+++|+.-|+.+... +.-+--|.-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 557 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPG-RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLG 557 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCC-cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHh
Confidence 456777888899999999998776543 22333332 2222 2233 467777777777543 223344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGK 256 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 256 (542)
-.-+|-+.|++++-.+.+.-.+++.+..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 5566778899999888888888877633
No 437
>PRK10941 hypothetical protein; Provisional
Probab=41.68 E-value=2.8e+02 Score=25.45 Aligned_cols=59 Identities=14% Similarity=-0.054 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
+.+-.+|.+.++++.|+.+.+.++...+. ++.-+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34445667777788888777777776554 566666666677777887777777776655
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.51 E-value=1.8e+02 Score=26.31 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009143 301 VLINGFCLNGDISSAFAYFCQMLK----RG-FLPDVITYNTLLNCLCKQGKLDEASHFY 354 (542)
Q Consensus 301 ~li~~~~~~~~~~~A~~~~~~~~~----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (542)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344556666666666666665532 11 1122333444445555555555544443
No 439
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.49 E-value=97 Score=20.04 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHH
Q 009143 482 LIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 517 (542)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 517 (542)
+.-++.+.|++++|.+..+.+.+. .|+-.-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 444566777777777777777664 3554443333
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.31 E-value=59 Score=17.48 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHh
Q 009143 240 GDAVKFLGEVLA 251 (542)
Q Consensus 240 ~~a~~~~~~~~~ 251 (542)
+.+..+|++++.
T Consensus 4 ~~~r~i~e~~l~ 15 (33)
T smart00386 4 ERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 441
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.25 E-value=2.8e+02 Score=27.58 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+.+++-.++++.+.+.| .+| ....-|+.|.+.+++++|...+++-.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhc
Confidence 45677778888887775 344 3445578888999999999888877664
No 442
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.94 E-value=37 Score=31.76 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=72.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHH
Q 009143 306 FCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ-ISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 306 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 384 (542)
....|.+++|++.|-..+... ++....|..-.+++.+.+++..|++=++..... .||. ..|..--.+..-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 445677888888888877763 455666777777788888888888877776664 3443 234333334445688888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
|...++...+.+..+....|-. ...-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHH
Confidence 8888888887776544433322 222333344444444444433
No 443
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.72 E-value=2.7e+02 Score=24.91 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009143 334 YNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (542)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (542)
....+..|.+.-++..|....+++.+ | ..+-.+++ -|.+..+.+--.++.+-....+++-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 33444555555555555555544433 1 11111222 2333333322223333333333333333343333 345
Q ss_pred cCChHHHHHHHHHHH
Q 009143 414 CGDLSNAFSIRDLML 428 (542)
Q Consensus 414 ~g~~~~A~~~~~~m~ 428 (542)
.|+..+|+..++.-.
T Consensus 205 ~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTV 219 (333)
T ss_pred cchHHHHHHHHHHHh
Confidence 666666666655443
No 444
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.28 E-value=2.7e+02 Score=24.81 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=10.9
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 009143 411 YGRCGDLSNAFSIRDLMLSFG 431 (542)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~ 431 (542)
+...|+++.|+++.+-+++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcC
Confidence 344555555555555555544
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.89 E-value=1.7e+02 Score=24.55 Aligned_cols=60 Identities=5% Similarity=-0.092 Sum_probs=37.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 467 MLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 467 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
+.+.|++++..-. .++..+...++.-.|.++++++.+.+..++..|...-++.+...|-.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445666655443 34444445566667888888888777667777666666666666654
No 446
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.89 E-value=20 Score=33.38 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=38.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
.|.++.|++.+...+...+ +....|..-.+.+.+.++...|++=++.....+ +-+...|-.--.+....|++++|
T Consensus 127 ~G~~~~ai~~~t~ai~lnp----~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP----PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred CcchhhhhcccccccccCC----chhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 3445555555555544443 444444444444555555555544444444332 11112222222333334555555
Q ss_pred HHHHHHHHHcCC
Q 009143 316 FAYFCQMLKRGF 327 (542)
Q Consensus 316 ~~~~~~~~~~~~ 327 (542)
...|+...+.+.
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 555555555443
No 447
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.89 E-value=1.8e+02 Score=27.56 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHH
Q 009143 458 HLALQLYDEMLRRGITPDI----ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR 522 (542)
Q Consensus 458 ~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 522 (542)
+++..++.+++.. -|+. .-|-++++.....|.+++++.+|++++..|..|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4556666666654 4554 3567777888888888888888888888888877777666776665
No 448
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.73 E-value=1.6e+02 Score=24.05 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 467 MLRRGITPDIITYTELIKGHCAR-GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 467 ~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445665554332 333444443 45667777777777766666666655566666665543
No 449
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.61 E-value=2.1e+02 Score=23.33 Aligned_cols=81 Identities=12% Similarity=0.203 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCC-----CCCHHhHHHHHHHHHHcCC-hhhHHHHHHHHHHCCCCCChHHHHHH
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRP-----SPNCATYNAFITGYCRVNE-LDKALHLFSTMANNGIRPNRVTHNIL 229 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 229 (542)
.+.++......+.+.-...+++.+....+ ..+...|+.++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35566666666666666666666532111 2355678888888866655 44567788888887788888888888
Q ss_pred HHHHHhc
Q 009143 230 VHALCKK 236 (542)
Q Consensus 230 ~~~~~~~ 236 (542)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8877654
No 450
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.71 E-value=3.2e+02 Score=25.44 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (542)
++....+.++.....+.+..+ ..+..-...++.....|++..|++++.+..+ -...+..+--.---
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i---------~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L 169 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI---------KTVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHL 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHH
Q ss_pred CCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 309 NGDISSAFAYFCQMLKRG-----FLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (542)
..+.++-....+++.+.. ..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 170 ~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 170 SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 451
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.59 E-value=1.9e+02 Score=22.17 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 452
>PRK09857 putative transposase; Provisional
Probab=37.54 E-value=2.4e+02 Score=26.27 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=26.8
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
.++....+.++.++..++++.+.+. .+.......+++.-+.+.|.-+++.++..+|+..|.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3443334444444444444444433 222223333444444444444455555555555443
No 453
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.18 E-value=5.8e+02 Score=27.76 Aligned_cols=281 Identities=10% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHc
Q 009143 122 VAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (542)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (542)
..+-..|...|+++.|++.-+.-.+. -..++..-.+.|.+.+++..|-+++-++ ...|..+.--+...
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEI 429 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhc
Q ss_pred CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHH------hcCChh------------HHHHHHHHHHhCCCCCCCCcHHH
Q 009143 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALC------KKGLLG------------DAVKFLGEVLADDDGKATSDVIT 263 (542)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~g~~~------------~a~~~~~~~~~~~~~~~~~~~~~ 263 (542)
.+.+ ++..|-.=+-..++|...+-..++..+. +.++.+ .-..+-+++....... .+...
T Consensus 430 ~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~--~~~~n 506 (911)
T KOG2034|consen 430 NQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLH--KDELN 506 (911)
T ss_pred CCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhh--HHhhh
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH----------------------
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ---------------------- 321 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~---------------------- 321 (542)
+.+.-......|+.+....+-.-+.+ |..++..+++.+.+++|++++..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~t 577 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKET 577 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHH
Q ss_pred ---HHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 322 ---MLKRGFLPDVITYNTLLNCLCKQ---GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 322 ---~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
....+-..+..-...++..+.+. .....+...++-....--..++..+|.++..|++..+-+.-..+-......
T Consensus 578 V~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~ 657 (911)
T KOG2034|consen 578 VSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMK 657 (911)
T ss_pred HHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcc
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 396 SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 396 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
+. ...-....++.|.+.+.-..+..++..|.
T Consensus 658 ~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 658 SR--VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred cc--ceecHHHHHHHHHHhCccceeeeHHHHHH
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.77 E-value=3e+02 Score=24.37 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=32.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhH--HHHHHHHHHcCChhHHHHHHHHHh
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP---DVLTH--NYLVNELCKIGDLEKADHVIREMS 180 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~ 180 (542)
+...-.|.||--|.-...+.+|...|..-. |+.| +..+. ..-|......|+.++|++....+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 333345555555555544555555544332 2333 22222 234555667777777777666654
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.31 E-value=77 Score=21.58 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNG 218 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (542)
..++.++..+++..-.++++..+.++.+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 456
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.11 E-value=4e+02 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=33.6
Q ss_pred ccccCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHhHc
Q 009143 451 SCNLGHIHLALQLYDEMLRRGITPDIITYTEL----IKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
+.+-++..-|......+.++.+.-=..||.+| |.-..+.+..++|.+..-+|.+.
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~ 345 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIED 345 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 33456666666666666665444334555544 33334667788888887777764
No 457
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.71 E-value=2e+02 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhh
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSE 181 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~ 181 (542)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555443
No 458
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.66 E-value=67 Score=28.35 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=37.8
Q ss_pred ccccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcC
Q 009143 451 SCNLGHIHLALQLYDEMLRRGITP-DIITYTELIKGHCARGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (542)
..+.++.+.+.+++.+..+. .| ....|--+...--+.|+++.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45667777888888777764 33 34566666666677888888888888777753
No 459
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.56 E-value=4.2e+02 Score=25.64 Aligned_cols=162 Identities=16% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---------------------
Q 009143 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML--------------------- 428 (542)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------- 428 (542)
..........+|++.-..++++-.- .+.++-.+...+.+.|+.+.|.+++++.+
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~~Py-----HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQKNPY-----HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHHCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ----hCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 009143 429 ----SFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC-ARGNMKEAEEVFAKIQ 503 (542)
Q Consensus 429 ----~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 503 (542)
.....-|..-|.++...... ..+.|-+..|.++.+-+......-|+..-..+|+.|+ +.++++--+++.+...
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~--L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQS--LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Q ss_pred H------cCCCCChhHHHHHHHHHHhcCCh---------------hHHHHHHHHHhhc
Q 009143 504 T------LGLAIDHIPFRILKKRYRRMKES---------------DKARDIHQKWLLR 540 (542)
Q Consensus 504 ~------~g~~~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~l~~ 540 (542)
. ...-|+... +..-++...++. ++|.+.+++++..
T Consensus 167 ~~~~~~~~~~lPn~a~--S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAF--SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred hhhhhhhhhhCccHHH--HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
No 460
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.35 E-value=2.2e+02 Score=22.43 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (542)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 285 (542)
.+.++|..|...+.+. .....|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~--~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGT--KLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTST--TBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccH--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444455444444333 444445555555555555555555544
No 461
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.70 E-value=3e+02 Score=23.71 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred hCCCCCChhhHHHHHHHHHHc----CChhHHHHHHHHHhhCCCCC----CHHhHHHHHHHHHHcCChhhHHHHHHHHHHC
Q 009143 146 QKGTVPDVLTHNYLVNELCKI----GDLEKADHVIREMSEMRPSP----NCATYNAFITGYCRVNELDKALHLFSTMANN 217 (542)
Q Consensus 146 ~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (542)
+.|..+++..++.++..+.+. ++.+-+..+=.+....++.+ +....-.-+..|-+.|+|.+--.+|-...
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~-- 78 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK-- 78 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH--
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009143 218 GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV 297 (542)
Q Consensus 218 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 297 (542)
.++-+.++++.--....+.+-.+... .....|....+.-++.-..+++.+ .+=..
T Consensus 79 -------------~gce~~~dlq~~~~~va~~Ltkd~Kd--k~~vPFceFAetV~k~~q~~e~dK----------~~LGR 133 (233)
T PF14669_consen 79 -------------MGCEKFADLQRFCACVAEALTKDSKD--KPGVPFCEFAETVCKDPQNDEVDK----------TLLGR 133 (233)
T ss_pred -------------hhcCCHHHHHHHHHHHHHHHHhcccc--cCCCCHHHHHHHHhcCCccchhhh----------hhhhH
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKR--------------GFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (542)
+--+++-.|-+..++.+..++++.|.+. +..+--...|.....+.+.|.+|.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 462
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.66 E-value=3.4e+02 Score=24.31 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=54.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009143 341 LCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNA 420 (542)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (542)
|.+..+-+--.++.+-....+++-+......++ +...|+..+|+.-++.-...- | +-.+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~------------------g-~Vn~ 227 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGF------------------G-LVNQ 227 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccc------------------c-ccch
Confidence 334444443444444444455555555555554 445688888877766554320 0 0011
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCH
Q 009143 421 FSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDI 476 (542)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 476 (542)
..+|+-.- .|.......++.. |..+++++|.+++.++.+.|..|.-
T Consensus 228 enVfKv~d----~PhP~~v~~ml~~------~~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 228 ENVFKVCD----EPHPLLVKKMLQA------CLKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhhhhccC----CCChHHHHHHHHH------HHhccHHHHHHHHHHHHHcCCCHHH
Confidence 11222111 3555555555553 3446777777777777777766543
No 463
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=34.46 E-value=5.2e+02 Score=26.42 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHH
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFL--PDVITYNTLLNCL 341 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~ 341 (542)
+.-.+..+...|...+++.+.++.... ...|-.+...+...+....|...+-+-.+.+-+ .+..-...+...+
T Consensus 306 ~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el~ 380 (587)
T COG4715 306 VDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAELK 380 (587)
T ss_pred HHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHHH
Confidence 344444455555555555544444321 223444445555555555544444333222211 1122233444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009143 342 CKQGKLDEASHFYGVLS 358 (542)
Q Consensus 342 ~~~g~~~~A~~~~~~~~ 358 (542)
...|++..|.++-....
T Consensus 381 ~~~g~~~~a~~Laq~~F 397 (587)
T COG4715 381 EEEGRLGFAAELAQEAF 397 (587)
T ss_pred HhhcchHHHHHHHHHHc
Confidence 45555555554444433
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.50 E-value=2.8e+02 Score=25.89 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009143 352 HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412 (542)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 412 (542)
++++.+...++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..||
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 4555555666666666666555555555566666666666654 3333555555554
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.39 E-value=2.9e+02 Score=23.17 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=9.0
Q ss_pred CChhHHHHHHHHHhhCCCCCC
Q 009143 167 GDLEKADHVIREMSEMRPSPN 187 (542)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~~~ 187 (542)
++.-.|.++++.+.+.++..+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is 59 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAK 59 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCC
Confidence 334444444444444443333
No 466
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.39 E-value=1e+02 Score=27.32 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=28.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
+.++.+.+.+++.+.+..-+ .....|-.+....-+.|+.+.|.+.|++..+.
T Consensus 7 ~~~D~~aaaely~qal~lap----~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAP----EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCc----hhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 44555555555555555433 44555555555555555555555555555544
No 467
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.27 E-value=5.2e+02 Score=26.00 Aligned_cols=383 Identities=13% Similarity=0.079 Sum_probs=194.5
Q ss_pred hHHHHHHHH-HhcCChHHHHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCC-C--CH
Q 009143 120 RHVAVIRDL-CLGGKIGTALWLRRKMIQK-GTVPD-----VLTHNYLVNELCKIG-DLEKADHVIREMSEMRPS-P--NC 188 (542)
Q Consensus 120 ~~~~li~~~-~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~-~--~~ 188 (542)
+...+...+ .-..+++.|..-+++.... ..-|+ ..++..|.+.|.... .+..+..++++..+.... | ..
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsc 127 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSC 127 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhH
Confidence 444444433 3446778887777765432 11222 245677788888766 778888888887663211 1 22
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHH------hc---CChhHHHHHHHHHHhCCCCCCCC
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC------KK---GLLGDAVKFLGEVLADDDGKATS 259 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~---g~~~~a~~~~~~~~~~~~~~~~~ 259 (542)
.....|+....-..++..|.+++.--.+. ..+-..+|..++..+. .. .++..+....+++.+... +
T Consensus 128 kllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~----s 202 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNIS----S 202 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccC----C
Confidence 22334566677778888888875332111 1222233433322222 12 234444445555555433 3
Q ss_pred cHH-------HH-HHHHHHHHhcCCHHHHHHHHHHHHHC---CC------------CCCHHHHHHHHH----H-------
Q 009143 260 DVI-------TS-TILMDSYFKNGDKFQALALWNDMFQK---NI------------QTDIVAYNVLIN----G------- 305 (542)
Q Consensus 260 ~~~-------~~-~~l~~~~~~~g~~~~a~~~~~~~~~~---~~------------~~~~~~~~~li~----~------- 305 (542)
|.. .| +.-+.-|...|+...+...++++.+. +- .|.+..+.-+.+ +
T Consensus 203 dk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv 282 (629)
T KOG2300|consen 203 DKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTV 282 (629)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHH
Confidence 321 12 22234455678887777777766542 10 122222211111 0
Q ss_pred --HHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHH--------HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCh---
Q 009143 306 --FCLNGDISSAFAYFCQMLKR----GFLP-DVITYN--------TLLNCLCKQGKLDEASHFYGVLSKTG-VAPDQ--- 366 (542)
Q Consensus 306 --~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~--------~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--- 366 (542)
-...|-+++|.++-+++... .-.+ ....++ .++-+-.-.|++.+|++-...|.+-- ..|.+
T Consensus 283 ~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Ll 362 (629)
T KOG2300|consen 283 IHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLL 362 (629)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHH
Confidence 11234445555544443321 1111 222222 12222234789999999888887631 12321
Q ss_pred ----hhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 009143 367 ----ISYKTIIQGL-CIHGDIVKAREFLLSMLEKSVVPEPHIW--NVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTF 439 (542)
Q Consensus 367 ----~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 439 (542)
.....++..| +..+.++.|...|....+.--.-|...+ ..+...|.+.|+.+.-.++++.+-. |+..++
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ 438 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP----LNTNSL 438 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcc
Confidence 1122333333 4568899999988887765333344333 3345668888887777777666542 211111
Q ss_pred H------HHHHHhhcccccccCChHHHHHHHHHHHhCCCCCC--H---HHHHHHHHHHHhcCCHHHHHHHHHHHhH-cCC
Q 009143 440 N------ALILAETRGASCNLGHIHLALQLYDEMLRRGITPD--I---ITYTELIKGHCARGNMKEAEEVFAKIQT-LGL 507 (542)
Q Consensus 440 ~------~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~ 507 (542)
. .+..++.. ...+.+++.+|...+++-.+..-.-| . -....|...+...|+..++.+...-..+ ...
T Consensus 439 ssq~l~a~~~~v~gl-faf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 439 SSQRLEASILYVYGL-FAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred hHHHHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 1 11111111 13467999999999998876310111 1 1222344566678999998887765444 223
Q ss_pred CCChh
Q 009143 508 AIDHI 512 (542)
Q Consensus 508 ~~~~~ 512 (542)
-||..
T Consensus 518 i~Di~ 522 (629)
T KOG2300|consen 518 IPDIP 522 (629)
T ss_pred CCCch
Confidence 35654
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.03 E-value=3.5e+02 Score=23.99 Aligned_cols=28 Identities=11% Similarity=-0.137 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009143 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (542)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (542)
+...-+|.|+.-|.-...+.+|-+.|..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~ 51 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK 51 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc
Confidence 3444555666666666666665555443
No 469
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=32.51 E-value=4.4e+02 Score=25.01 Aligned_cols=117 Identities=14% Similarity=0.235 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 009143 311 DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ------GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 384 (542)
.++++..++++....+ .|.++.....|.++-.. -++.....+|+.+......| +++.|.-+ +..+..-.+.
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHh
Confidence 4678888888888877 48888888877765432 35777888888887755333 33344333 3444455677
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 385 AREFLLSMLEKSVVPEPHIW-NVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
++.+.+.+...+--.+...| ..-...+.+.|+.++|...|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 78888777765322233333 34466778899999999999998873
No 470
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.46 E-value=3.5e+02 Score=23.81 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcC
Q 009143 457 IHLALQLYDEMLRRGITP----D-IITYTELIKGHCARGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p----~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (542)
+..|.+.|.+..+..-.| + ....-.++....+.|++++|.+.|.++...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455666676666532222 1 2333356677788999999999999999864
No 471
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.40 E-value=5.1e+02 Score=25.68 Aligned_cols=337 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred cccCcCCCCchhHHHHHHHHHHh--hHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009143 74 NKDSDNEGNPQAVFNALDLILKE--NLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP 151 (542)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 151 (542)
.|.......-..+-+-+...+++ ..+..+..++.+. ++..+.+.+...-+++...+.-..|..+.-.+...+...
T Consensus 201 ~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR---~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~ 277 (645)
T KOG0403|consen 201 FWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIR---ELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREE 277 (645)
T ss_pred hhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHH---HhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhh
Q ss_pred ChhhHHHHHHHHHHcC--------ChhHHHHHHHHHhhCCCCCCH-----------------------HhHHHHHHHHHH
Q 009143 152 DVLTHNYLVNELCKIG--------DLEKADHVIREMSEMRPSPNC-----------------------ATYNAFITGYCR 200 (542)
Q Consensus 152 ~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~-----------------------~~~~~li~~~~~ 200 (542)
+...-+.+..++.+.+ +...|...|+.+....+.-+- .....+|+-|..
T Consensus 278 glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFl 357 (645)
T KOG0403|consen 278 GLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFL 357 (645)
T ss_pred cchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHh
Q ss_pred cCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC----C
Q 009143 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG----D 276 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~ 276 (542)
.|+..+..+.++.+-.-...|-...+..-+..=.+...-+.|-.++..+--.-. ++..+-+.....+-... +
T Consensus 358 sgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~f----steDv~~~F~mLLesaedtALD 433 (645)
T KOG0403|consen 358 SGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVF----STEDVEKGFDMLLESAEDTALD 433 (645)
T ss_pred cCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccC----CHHHHHHHHHHHHhcchhhhcc
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (542)
.-.|-+.+...+.+.+--++-.-..+=....+..-...+.+.++.+... -.-...=..+++++..-|--......-++
T Consensus 434 ~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsL--lsar~aGeRllr~WGgGG~g~sVed~kdk 511 (645)
T KOG0403|consen 434 IPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSL--LSARHAGERLLRVWGGGGGGWSVEDAKDK 511 (645)
T ss_pred ccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHH--HHHhhcccchhheecCCCCcchHHHHHHH
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009143 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432 (542)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 432 (542)
+.. |+.-|...|+..+|...++++.---.. ....+.+++.+..+.|+-...+.+++..-..|.
T Consensus 512 I~~------------LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDM------------LLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHH------------HHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.90 E-value=4.1e+02 Score=25.34 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (542)
+..|.+++......|.++.++.+|++.+..|-.|-...-.++++.+-
T Consensus 140 aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 140 AKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566677777777777777777777777776666555555555543
No 473
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.89 E-value=2.8e+02 Score=22.58 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009143 334 YNTLLNCLCKQGKLDEASHFYGVLSKTG-----VAPDQISYKTIIQGLCIHGD-IVKAREFLLSMLEKSVVPEPHIWNVI 407 (542)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (542)
.+.++.-....+++.....+++.+.... -..+...|..++.+..+..- ---+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445554455555555555555542210 01234455666666544443 23344555555555555666666666
Q ss_pred HHHHHh
Q 009143 408 IDGYGR 413 (542)
Q Consensus 408 i~~~~~ 413 (542)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 665544
No 474
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=5.5e+02 Score=25.83 Aligned_cols=123 Identities=13% Similarity=0.017 Sum_probs=61.8
Q ss_pred HHHHHHhcC--ChHHHHHHHHHHHhCCCCCC--hhhHHHHHHH-HHHcCChhHHHHHHHHHhhC-CCCCCH-----HhHH
Q 009143 124 VIRDLCLGG--KIGTALWLRRKMIQKGTVPD--VLTHNYLVNE-LCKIGDLEKADHVIREMSEM-RPSPNC-----ATYN 192 (542)
Q Consensus 124 li~~~~~~g--~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~-~~~~~~-----~~~~ 192 (542)
+...+...| ++..+++.++......+..- ..+.-.+... +.-..+++.|..-++..... ..-|+- .++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 445555666 66666666666655422111 1222223332 23346677776666654321 112222 3455
Q ss_pred HHHHHHHHcC-ChhhHHHHHHHHHHCC--CC-CChHHHHHHHHHHHhcCChhHHHHHH
Q 009143 193 AFITGYCRVN-ELDKALHLFSTMANNG--IR-PNRVTHNILVHALCKKGLLGDAVKFL 246 (542)
Q Consensus 193 ~li~~~~~~g-~~~~A~~~~~~m~~~g--~~-p~~~~~~~l~~~~~~~g~~~~a~~~~ 246 (542)
.|...|.... .+..+..++++..+.. ++ ..-.....|+..+.-..++..|.+++
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 5666666665 6677777777765531 11 01111233455555666777776663
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.63 E-value=3.8e+02 Score=24.00 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 009143 336 TLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI-HGDIVKAREFLLSMLE 394 (542)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~ 394 (542)
.++..+.+.|+++++...+..+...+...+..--+.+-.+|-. .|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566667778888888888887777666666666666666632 3444555555555543
No 476
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.44 E-value=5e+02 Score=25.28 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=11.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC
Q 009143 376 LCIHGDIVKAREFLLSMLEKSV 397 (542)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~ 397 (542)
+.+.+++..|.++|.++.....
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l 161 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLL 161 (380)
T ss_pred HHHhcChHHHHHHHHHHHhccc
Confidence 3345555666666666555543
No 477
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.40 E-value=2.1e+02 Score=20.85 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 352 HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (542)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (542)
++|+-....|+..|+.+|..+++.+.-.=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344444444444444444444444433333444444444443
No 478
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.38 E-value=1.7e+02 Score=19.92 Aligned_cols=47 Identities=6% Similarity=0.070 Sum_probs=22.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009143 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412 (542)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 412 (542)
....++.+++..++..-.++++..+.++...|.- +..+|-.-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3344555555555555555555555555555442 4444444444433
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.36 E-value=6.5e+02 Score=28.76 Aligned_cols=65 Identities=12% Similarity=-0.056 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 287 (542)
....|..+...+.+.|+.++|...-....-. +. ..+.+...|..+.-.....++...|...+.+.
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~-ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK-DSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC-CCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 3455666666666666666666544332211 11 11123334444444444444555554444444
No 480
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.99 E-value=4.7e+02 Score=24.85 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccccc
Q 009143 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR------CGDLSNAFSIRDLMLSFGVSSNV-FTFNALILAETRGASC 452 (542)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 452 (542)
+-++++..++.+....+. |.+......|.++.. .-+|.....+|+-+.. +.|+. ++.|--+. ..
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVA------la 340 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVA------LA 340 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHH------HH
Confidence 345667777777766654 566666666655432 2356666666666665 34544 45555554 34
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 453 NLGHIHLALQLYDEMLRRGITPDIITY-TELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
+....+.++.+.+.+...+---+...| ..-.+.+.+.|+.++|...|++....
T Consensus 341 ~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 341 MREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 445566666666666553211122222 33345556677777777777776664
No 481
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.69 E-value=6.9e+02 Score=26.72 Aligned_cols=204 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHHcCC
Q 009143 99 DRLKTMRDTGPVRCTLETDYR---RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV-------LTHNYLVNELCKIGD 168 (542)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~ 168 (542)
+-+.+|+.... .|++. +-..++-.|....+++..+++.+.+....-.-+. +.|..-++.--+-|+
T Consensus 184 ~~L~~mR~RlD-----np~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 184 DYLDKMRTRLD-----NPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHhhcC-----CccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH---------cCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 009143 169 LEKADHVIREMSEMRPSPNCATYNAFITGYCR---------VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (542)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 239 (542)
-++|....-.+.+..-......|....+.|-. .+..+.|.+.|++.-+ +.|+..+-..+...+...|+.
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYF 319 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 319 (542)
=+--.-++.+ -..|-..+.+.|.++....+|+-.. .+.+-.-++++.+|.+.-
T Consensus 337 Fens~Elq~I--------------gmkLn~LlgrKG~leklq~YWdV~~-------------y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 337 FENSLELQQI--------------GMKLNSLLGRKGALEKLQEYWDVAT-------------YFEASVLANDYQKAIQAA 389 (1226)
T ss_pred ccchHHHHHH--------------HHHHHHHhhccchHHHHHHHHhHHH-------------hhhhhhhccCHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHH
Q 009143 320 CQMLKRGFLPDVITYNTL 337 (542)
Q Consensus 320 ~~~~~~~~~p~~~~~~~l 337 (542)
+.|.+.. +|....-+.+
T Consensus 390 e~mfKLk-~P~WYLkS~m 406 (1226)
T KOG4279|consen 390 EMMFKLK-PPVWYLKSTM 406 (1226)
T ss_pred HHHhccC-CceehHHHHH
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.68 E-value=1.1e+02 Score=23.44 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcC
Q 009143 489 RGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK 525 (542)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 525 (542)
.+..-.|.++++.+.+.+..++..|....++.+...|
T Consensus 13 ~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 13 SDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333444455555544444444444444444444444
No 483
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=30.46 E-value=4.1e+02 Score=23.98 Aligned_cols=53 Identities=11% Similarity=-0.122 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHh---CCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh
Q 009143 417 LSNAFSIRDLMLS---FGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 417 ~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
.+.|.+.|+...+ ..++|...+...+.-.++.-.|--.++.++|.++-++..+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666665544 2466766665555444333234456777777766665554
No 484
>PRK09857 putative transposase; Provisional
Probab=30.45 E-value=4.1e+02 Score=24.80 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ 293 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 293 (542)
+..++....+.++.++..++++.+.+..+ .......++..-+.+.|..+++.++..+|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~----~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSP----KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455544566666666666666655432 22223334555555555555555555555555543
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.87 E-value=1.8e+02 Score=22.32 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=23.5
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 009143 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (542)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 239 (542)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 334444445555666666666555444555544455555555543
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.75 E-value=3.1e+02 Score=22.32 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHhhCCC
Q 009143 169 LEKADHVIREMSEMRP 184 (542)
Q Consensus 169 ~~~A~~~~~~~~~~~~ 184 (542)
.-.|.++++.+.+.++
T Consensus 33 h~sa~eI~~~l~~~~~ 48 (148)
T PRK09462 33 HVSAEDLYKRLIDMGE 48 (148)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 3344444444444333
No 487
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=6.4e+02 Score=25.98 Aligned_cols=94 Identities=9% Similarity=0.023 Sum_probs=50.8
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh
Q 009143 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC-KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (542)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (542)
|..+.+.|-+..|.++-..+.+....-|+.....+|+.|+ ++.++.-.+++++...........|+-..-.++...|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3445566777777777777766543335666666666665 566677777777666544332222443333444444444
Q ss_pred cCC---HHHHHHHHHHHH
Q 009143 274 NGD---KFQALALWNDMF 288 (542)
Q Consensus 274 ~g~---~~~a~~~~~~~~ 288 (542)
... -+.|...+.+..
T Consensus 429 ~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL 446 (665)
T ss_pred cCChhhHHHHHHHHHHHH
Confidence 433 233444444443
No 488
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.08 E-value=4.1e+02 Score=23.59 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=44.1
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 009143 121 HVAVIRDLC--LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (542)
Q Consensus 121 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (542)
|..++.++. ..+++++|++.+-.- .+.| .-...++..+...|+.+.|..+++.+.. +-.+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH-
Confidence 344444443 446666666655211 1111 1223466666667777777777666432 11122223333333
Q ss_pred HHcCChhhHHHHHHHHHH
Q 009143 199 CRVNELDKALHLFSTMAN 216 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~ 216 (542)
..++.+.+|..+-+...+
T Consensus 151 La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHcCCHHHHHHHHHhCch
Confidence 555777777776665544
No 489
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=28.81 E-value=1.3e+02 Score=17.87 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 513 PFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
+|..|...-...+++++|.+=|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666667777777776666654
No 490
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.78 E-value=8.6e+02 Score=27.17 Aligned_cols=247 Identities=13% Similarity=0.026 Sum_probs=122.8
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHH
Q 009143 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 230 (542)
+++.+-...+..+.+.+..+ +...+..+++ .++...-...+.++.+.+........+..+... +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 45555556666666655433 4444444442 123333334444444433222222333333332 4555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
..+...+.-+ .. .+-+.+. . ++..+-...+.++.+.+..+. +..... .++...-...+.++...+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~----D--~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG----D--PDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc----C--CCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhc
Confidence 5555433211 11 2222222 1 444555555666655544322 122222 355666666666666665
Q ss_pred CHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 009143 311 DISS-AFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFL 389 (542)
Q Consensus 311 ~~~~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 389 (542)
..+. +...+..+.. .+|...-...+.++.+.|..+.+...+..+.+ .++..+-...+.++...+. +++...+
T Consensus 771 ~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 771 AGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred cccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5432 3444444443 34666777777777777766554444444443 2455555666666766665 4555666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 390 LSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 390 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
..+++. |+...-...+.++.+.+....+...+....+
T Consensus 844 ~~~L~D---~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALTD---PHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhcC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666543 4666666666666665334456666666555
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.82 E-value=3.8e+02 Score=25.05 Aligned_cols=57 Identities=9% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009143 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (542)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+...+|+.+... ..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 467778888888888888777766677777888888888888763 333666666655
No 492
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.74 E-value=2.5e+02 Score=20.58 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=16.7
Q ss_pred CHHhHHHHHHHHHHcCChhhHHHHHHHHHHC
Q 009143 187 NCATYNAFITGYCRVNELDKALHLFSTMANN 217 (542)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (542)
|...--.+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455555555666666666666665555544
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=27.54 E-value=2e+02 Score=19.36 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChHHHHHH
Q 009143 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY-----GRCGDLSNAFSI 423 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~A~~~ 423 (542)
..|++-+|-++++.+=.....+....+..+|... .+.|+...|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4566666666666655433333444444444432 344555555544
No 494
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.52 E-value=9.9e+02 Score=27.46 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYNVLINGFCLNGDISSAFAYFC 320 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 320 (542)
+...+++.+-..+...++.+.|.+..+.+... | --.+..++..+...+...+++..|....+
T Consensus 1055 ~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1055 PTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 33334444444444445555555555544331 1 12344555556666665666555554443
No 495
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.16 E-value=5.4e+02 Score=24.30 Aligned_cols=146 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (542)
++...-+..+..+-++.-...++.++ ....+|..|..--... +.+|.++|++..+.+- ..|.+
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~----eCA~AyvLLAEEEa~T--i~~AE~l~k~ALka~e-----------~~yr~ 252 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINN----ECATAYVLLAEEEATT--IVDAERLFKQALKAGE-----------TIYRQ 252 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCc----hhhhHHHhhhhhhhhh--HHHHHHHHHHHHHHHH-----------HHHhh
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 009143 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT-GVAPDQISYKTIIQGLCIHGDIVKARE 387 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (542)
.++...--...+.+.+++...-...-..+..+..+.|+..+|.+.++.+.+. .+..-..+...++.++....-+.+...
T Consensus 253 sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred HHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 009143 388 FLLS 391 (542)
Q Consensus 388 ~~~~ 391 (542)
++-+
T Consensus 333 vLak 336 (556)
T KOG3807|consen 333 VLAK 336 (556)
T ss_pred HHHh
No 496
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.76 E-value=1.8e+02 Score=22.48 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=23.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG 237 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 237 (542)
.++..+...+..-.|.++++.+.+.|...+..|.-.-++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444455555566666666666555555554444445555554
No 497
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.42 E-value=5.1e+02 Score=26.02 Aligned_cols=242 Identities=12% Similarity=0.067 Sum_probs=109.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHh--HHHHHHH-----HHHcCChhhHHHHHHHHHHCCCCCChH---HHHH
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCAT--YNAFITG-----YCRVNELDKALHLFSTMANNGIRPNRV---THNI 228 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ 228 (542)
.+...++.|+.+-+ +.+.+.|..++... ....+.. ....|.. ++.+.+.+.|..++.. ..+.
T Consensus 38 ~L~~A~~~~~~~iv----k~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNIDVV----KILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHHHH----HHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCch
Confidence 44445666776655 55556666655432 2233444 4444544 3445555666554432 2333
Q ss_pred HHHHHH--hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH--HHH
Q 009143 229 LVHALC--KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG--DKFQALALWNDMFQKNIQTDIVAY--NVL 302 (542)
Q Consensus 229 l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~--~~l 302 (542)
+ ...+ ..|+.+-+..++ +.|......+.. ..+.+...+..| +.+ +.+.+.+.|..++.... .+-
T Consensus 110 L-~~A~~~~~~~~~iv~~Ll----~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tp 179 (480)
T PHA03100 110 L-LYAISKKSNSYSIVEYLL----DNGANVNIKNSD-GENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTP 179 (480)
T ss_pred h-hHHHhcccChHHHHHHHH----HcCCCCCccCCC-CCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCH
Confidence 4 3444 666655544444 333211012222 233455556666 443 44445555554433221 233
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCh---hhH
Q 009143 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVIT--------YNTLLNCLCKQGK--LDEASHFYGVLSKTGVAPDQ---ISY 369 (542)
Q Consensus 303 i~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~--------~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~---~~~ 369 (542)
+...+..|+.+ +.+.+.+.|..++... +...+...+..|+ .+- .+.+.+.|..++. ...
T Consensus 180 L~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~i----v~~Ll~~g~din~~d~~g~ 251 (480)
T PHA03100 180 LHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEV----VNYLLSYGVPINIKDVYGF 251 (480)
T ss_pred HHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHH----HHHHHHcCCCCCCCCCCCC
Confidence 45556666554 4444455665554321 1333444445555 443 3444455554432 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 009143 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHI---WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (542)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 436 (542)
+.+. ..+..|+.+ +++.+++.|..++... .+.+. ...+.++. ++++.+.+.|...+.
T Consensus 252 TpL~-~A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl~-~A~~~~~~----~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 252 TPLH-YAVYNNNPE----FVKYLLDLGANPNLVNKYGDTPLH-IAILNNNK----EIFKLLLNNGPSIKT 311 (480)
T ss_pred CHHH-HHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHH-HHHHhCCH----HHHHHHHhcCCCHHH
Confidence 3333 334556643 4444555555443321 22222 22334443 455556666654443
No 498
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.34 E-value=3.3e+02 Score=21.55 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhH-HHHHHHHHHhcCChhHHHHHHH
Q 009143 457 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP-FRILKKRYRRMKESDKARDIHQ 535 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~ 535 (542)
++++.+.|.....- +-|+.-...-+.---..++ ..++|..|.+.|+--.... |......+-..|++.+|.++|+
T Consensus 49 Lerc~~~f~~~~~Y--knD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDERY--KNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhhh--cCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred H
Q 009143 536 K 536 (542)
Q Consensus 536 ~ 536 (542)
.
T Consensus 124 ~ 124 (125)
T smart00777 124 L 124 (125)
T ss_pred c
No 499
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=26.17 E-value=3.2e+02 Score=30.37 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHH
Q 009143 455 GHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR 515 (542)
Q Consensus 455 g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 515 (542)
..+.+++++|..|...|+.+.. ..|......+.+.+.+++|..+|+.-++....|-...-.
T Consensus 92 e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~ 153 (974)
T KOG1166|consen 92 EELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLR 153 (974)
T ss_pred HHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 5567777777777776666554 445556666666777777777777766654555444433
No 500
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=26.02 E-value=8.6e+02 Score=26.29 Aligned_cols=45 Identities=20% Similarity=0.100 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009143 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA 445 (542)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 445 (542)
......+++.. .+.++++.|+..+.+|.+.|..|....-..++.+
T Consensus 258 hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 258 HFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred CHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33444444443 3457788888888888887777765555544443
Done!