Query 009143
Match_columns 542
No_of_seqs 814 out of 3263
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 19:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-37 1.2E-41 319.2 43.9 424 96-541 98-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.1E-35 1.7E-39 302.9 40.5 405 96-521 131-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-28 5.8E-33 239.7 48.3 384 124-526 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-28 2.2E-32 235.7 44.5 365 159-541 5-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-30 6E-35 258.2 24.8 205 279-488 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.9E-30 6.6E-35 257.9 24.7 205 240-446 7-220 (501)
7 2gw1_A Mitochondrial precursor 99.9 8.5E-25 2.9E-29 221.7 36.8 409 118-541 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.2E-23 7.6E-28 207.6 40.8 307 116-437 24-363 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 4.4E-23 1.5E-27 205.4 38.8 317 136-469 10-357 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-22 4.8E-27 206.6 37.7 406 117-541 24-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 2.2E-22 7.6E-27 203.9 36.2 395 96-506 20-479 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 9.8E-20 3.4E-24 175.1 38.7 302 117-430 2-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 7.8E-20 2.7E-24 175.8 37.8 333 153-523 3-352 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.7E-19 5.8E-24 183.8 37.9 370 116-506 57-492 (537)
15 2xm6_A Protein corresponding t 99.9 1.9E-17 6.6E-22 166.4 50.3 372 116-521 37-450 (490)
16 3hym_B Cell division cycle pro 99.9 3.4E-19 1.2E-23 169.3 34.5 294 114-417 18-321 (330)
17 2xm6_A Protein corresponding t 99.9 7.4E-17 2.5E-21 162.1 51.6 365 136-541 25-433 (490)
18 2ooe_A Cleavage stimulation fa 99.9 2.2E-17 7.6E-22 167.7 47.0 410 116-540 11-492 (530)
19 3hym_B Cell division cycle pro 99.9 6.8E-19 2.3E-23 167.2 33.5 285 149-444 18-312 (330)
20 1fch_A Peroxisomal targeting s 99.8 2.6E-19 9E-24 173.0 26.5 267 263-539 66-358 (368)
21 1fch_A Peroxisomal targeting s 99.8 7.3E-19 2.5E-23 169.9 26.5 288 130-426 37-355 (368)
22 4g1t_A Interferon-induced prot 99.8 3.3E-17 1.1E-21 164.0 35.8 386 116-541 49-460 (472)
23 4g1t_A Interferon-induced prot 99.8 1.2E-16 4.2E-21 159.8 37.7 390 83-513 50-468 (472)
24 4eqf_A PEX5-related protein; a 99.8 3.6E-18 1.2E-22 164.9 24.8 236 117-360 64-310 (365)
25 4eqf_A PEX5-related protein; a 99.8 5.8E-18 2E-22 163.4 24.7 266 152-426 64-352 (365)
26 3cv0_A Peroxisome targeting si 99.8 9.9E-18 3.4E-22 158.9 25.5 280 117-427 20-312 (327)
27 2ooe_A Cleavage stimulation fa 99.8 8.6E-16 2.9E-20 156.0 41.3 384 141-540 2-454 (530)
28 3cv0_A Peroxisome targeting si 99.8 1.1E-17 3.7E-22 158.6 25.5 268 92-391 31-311 (327)
29 3mkr_A Coatomer subunit epsilo 99.8 7.1E-17 2.4E-21 149.8 26.5 194 224-429 66-263 (291)
30 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.1E-22 156.0 22.2 222 118-378 32-253 (449)
31 3mkr_A Coatomer subunit epsilo 99.8 1.8E-16 6.1E-21 147.1 26.6 273 126-422 7-286 (291)
32 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.8E-22 157.3 16.8 348 130-537 15-369 (449)
33 3spa_A Mtrpol, DNA-directed RN 99.7 2.6E-18 9E-23 175.5 11.3 115 331-445 127-245 (1134)
34 1xi4_A Clathrin heavy chain; a 99.7 1.2E-13 4E-18 146.1 44.2 354 124-536 1055-1441(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.7 6.9E-18 2.4E-22 172.5 10.1 120 365-489 126-249 (1134)
36 1xi4_A Clathrin heavy chain; a 99.7 8.7E-14 3E-18 147.0 40.8 351 120-536 987-1341(1630)
37 3uq3_A Heat shock protein STI1 99.7 3.9E-15 1.3E-19 135.6 25.4 226 118-360 5-236 (258)
38 2pl2_A Hypothetical conserved 99.7 3.2E-15 1.1E-19 132.4 22.6 199 221-428 3-212 (217)
39 3e4b_A ALGK; tetratricopeptide 99.7 4.2E-15 1.4E-19 147.1 25.2 383 123-539 8-420 (452)
40 3uq3_A Heat shock protein STI1 99.7 1.3E-14 4.5E-19 132.1 25.7 226 189-429 6-235 (258)
41 2pl2_A Hypothetical conserved 99.7 5.4E-15 1.8E-19 131.0 21.4 194 155-357 7-211 (217)
42 3u4t_A TPR repeat-containing p 99.7 1.2E-14 4.3E-19 133.6 24.6 232 158-396 8-251 (272)
43 2ho1_A Type 4 fimbrial biogene 99.7 7.3E-14 2.5E-18 126.8 26.3 201 118-325 37-238 (252)
44 2h6f_A Protein farnesyltransfe 99.6 5.1E-14 1.8E-18 135.0 26.0 216 119-344 98-322 (382)
45 3u4t_A TPR repeat-containing p 99.6 8.5E-14 2.9E-18 128.0 26.2 237 118-361 3-251 (272)
46 2h6f_A Protein farnesyltransfe 99.6 7.7E-14 2.6E-18 133.8 26.5 251 153-414 97-366 (382)
47 2vq2_A PILW, putative fimbrial 99.6 8.7E-14 3E-18 123.7 25.3 202 117-325 7-211 (225)
48 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-13 6E-18 124.3 27.3 198 225-429 39-237 (252)
49 1ouv_A Conserved hypothetical 99.6 1.2E-12 3.9E-17 120.5 32.5 225 259-506 4-252 (273)
50 4e6h_A MRNA 3'-END-processing 99.6 1.4E-11 4.9E-16 126.0 42.8 412 116-540 64-570 (679)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-14 1.6E-18 129.9 22.0 220 202-430 19-244 (275)
52 3e4b_A ALGK; tetratricopeptide 99.6 9.2E-14 3.2E-18 137.5 25.4 352 158-541 8-388 (452)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-14 5.4E-19 133.1 18.7 222 129-359 16-243 (275)
54 2vq2_A PILW, putative fimbrial 99.6 2.6E-13 9E-18 120.6 26.0 200 224-429 9-210 (225)
55 2q7f_A YRRB protein; TPR, prot 99.6 4.1E-14 1.4E-18 127.6 20.4 202 116-325 21-222 (243)
56 1ouv_A Conserved hypothetical 99.6 2E-12 6.7E-17 119.0 32.0 224 117-361 5-252 (273)
57 2q7f_A YRRB protein; TPR, prot 99.6 7.5E-14 2.6E-18 125.9 20.9 196 155-358 25-220 (243)
58 4a1s_A PINS, partner of inscut 99.6 8E-14 2.8E-18 136.6 19.2 275 120-429 50-371 (411)
59 3sf4_A G-protein-signaling mod 99.6 7.9E-14 2.7E-18 136.2 18.4 278 116-394 7-335 (406)
60 4a1s_A PINS, partner of inscut 99.6 9.4E-14 3.2E-18 136.1 18.3 280 224-540 49-372 (411)
61 3sf4_A G-protein-signaling mod 99.6 1.3E-13 4.5E-18 134.6 18.6 279 151-429 7-335 (406)
62 3ro2_A PINS homolog, G-protein 99.5 2.2E-13 7.4E-18 129.1 18.2 269 161-429 13-331 (338)
63 3ro2_A PINS homolog, G-protein 99.5 2.2E-13 7.5E-18 129.1 18.0 275 226-540 8-332 (338)
64 3vtx_A MAMA; tetratricopeptide 99.5 2.5E-12 8.4E-17 110.5 22.0 165 153-324 5-169 (184)
65 2ond_A Cleavage stimulation fa 99.5 2.3E-11 7.8E-16 113.9 30.2 217 135-360 33-270 (308)
66 3ulq_A Response regulator aspa 99.5 1.7E-12 5.7E-17 125.9 22.9 300 128-429 22-367 (383)
67 3ulq_A Response regulator aspa 99.5 1.4E-12 4.8E-17 126.5 21.8 232 302-540 109-368 (383)
68 3vtx_A MAMA; tetratricopeptide 99.5 6.8E-12 2.3E-16 107.7 23.3 173 259-437 3-175 (184)
69 2ond_A Cleavage stimulation fa 99.5 2.2E-11 7.5E-16 114.0 28.3 217 170-394 33-269 (308)
70 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4.1E-17 130.3 19.6 214 132-355 82-316 (474)
71 4abn_A Tetratricopeptide repea 99.5 2.2E-12 7.7E-17 128.3 20.1 214 204-426 84-317 (474)
72 4e6h_A MRNA 3'-END-processing 99.5 1.1E-09 3.6E-14 112.2 39.7 398 134-541 48-534 (679)
73 3nf1_A KLC 1, kinesin light ch 99.4 5.6E-13 1.9E-17 125.0 13.3 173 117-289 26-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 6.9E-13 2.4E-17 124.3 13.1 238 190-429 29-306 (311)
75 1hz4_A MALT regulatory protein 99.4 6.9E-11 2.4E-15 114.0 26.6 162 229-393 20-201 (373)
76 3q15_A PSP28, response regulat 99.4 5E-11 1.7E-15 115.2 24.5 311 116-429 8-364 (378)
77 1hz4_A MALT regulatory protein 99.4 1.7E-10 5.8E-15 111.3 27.6 202 228-429 98-321 (373)
78 3q15_A PSP28, response regulat 99.4 2.1E-10 7.2E-15 110.8 27.8 232 265-504 105-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.4 8.3E-11 2.8E-15 100.6 20.2 160 157-323 12-171 (186)
80 4i17_A Hypothetical protein; T 99.4 1.2E-10 4E-15 103.8 21.6 197 116-326 5-210 (228)
81 4gyw_A UDP-N-acetylglucosamine 99.3 6.8E-11 2.3E-15 122.5 21.5 167 259-429 7-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.3 4.8E-11 1.6E-15 123.6 20.1 166 117-289 8-173 (723)
83 3as5_A MAMA; tetratricopeptide 99.3 1.6E-10 5.6E-15 98.8 20.4 164 189-359 9-172 (186)
84 4i17_A Hypothetical protein; T 99.3 2.2E-10 7.4E-15 102.0 21.0 197 151-361 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 5.3E-11 1.8E-15 109.6 14.1 229 130-360 13-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4.1E-15 107.2 15.0 230 164-395 12-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.2 4.8E-09 1.6E-13 95.4 24.5 181 207-396 85-283 (310)
88 1qqe_A Vesicular transport pro 99.2 2.1E-09 7.1E-14 99.6 21.0 128 197-324 46-186 (292)
89 1qqe_A Vesicular transport pro 99.2 2.3E-09 7.8E-14 99.4 20.8 239 170-429 2-268 (292)
90 3mv2_B Coatomer subunit epsilo 99.2 1.6E-08 5.3E-13 92.0 25.0 183 242-436 85-286 (310)
91 2uy1_A Cleavage stimulation fa 99.1 7.3E-08 2.5E-12 95.7 30.7 366 120-539 17-412 (493)
92 3qky_A Outer membrane assembly 99.1 2.8E-09 9.6E-14 97.0 18.2 101 116-217 13-126 (261)
93 3qky_A Outer membrane assembly 99.1 2.3E-09 7.7E-14 97.6 17.3 104 151-254 13-128 (261)
94 2fo7_A Synthetic consensus TPR 99.1 8.6E-09 2.9E-13 82.6 17.7 58 193-251 6-63 (136)
95 2fo7_A Synthetic consensus TPR 99.1 7.6E-09 2.6E-13 82.9 17.2 128 156-289 4-131 (136)
96 2pzi_A Probable serine/threoni 99.1 1.9E-09 6.5E-14 112.1 17.0 170 164-343 402-580 (681)
97 3urz_A Uncharacterized protein 99.1 5.1E-09 1.7E-13 91.6 16.9 76 194-274 60-135 (208)
98 3urz_A Uncharacterized protein 99.1 1.1E-08 3.7E-13 89.4 18.2 75 267-343 60-134 (208)
99 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.9E-08 1.3E-12 87.1 20.8 204 117-361 3-214 (225)
100 3rjv_A Putative SEL1 repeat pr 99.0 3.6E-08 1.2E-12 86.4 20.2 177 136-326 4-198 (212)
101 4ga2_A E3 SUMO-protein ligase 99.0 2E-09 7E-14 88.5 11.2 144 126-276 5-149 (150)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.3E-08 7.7E-13 88.6 18.8 202 83-325 4-213 (225)
103 2pzi_A Probable serine/threoni 99.0 4.7E-09 1.6E-13 109.2 16.5 174 234-416 402-583 (681)
104 3qou_A Protein YBBN; thioredox 99.0 7.3E-09 2.5E-13 95.6 15.8 166 151-323 115-282 (287)
105 4ga2_A E3 SUMO-protein ligase 99.0 1.7E-09 5.7E-14 89.1 10.1 144 160-310 4-148 (150)
106 2r5s_A Uncharacterized protein 99.0 5.1E-09 1.7E-13 88.9 13.4 160 121-286 9-169 (176)
107 3dra_A Protein farnesyltransfe 99.0 2.9E-07 1E-11 84.6 25.8 222 130-359 44-286 (306)
108 2r5s_A Uncharacterized protein 99.0 9.2E-09 3.1E-13 87.2 14.7 164 154-324 7-172 (176)
109 3dra_A Protein farnesyltransfe 99.0 4.8E-07 1.6E-11 83.1 26.9 219 168-394 48-286 (306)
110 3qou_A Protein YBBN; thioredox 99.0 2.2E-08 7.4E-13 92.4 17.5 168 116-289 115-283 (287)
111 2uy1_A Cleavage stimulation fa 98.9 1.6E-06 5.5E-11 86.1 31.0 369 83-504 14-412 (493)
112 2vsy_A XCC0866; transferase, g 98.9 2.3E-08 7.8E-13 102.1 18.2 164 131-302 2-168 (568)
113 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.4E-12 81.3 21.2 176 241-431 4-198 (212)
114 2vsy_A XCC0866; transferase, g 98.9 3.6E-08 1.2E-12 100.7 18.4 154 201-361 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 1.9E-08 6.6E-13 93.8 14.3 95 298-393 118-222 (307)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 1.5E-07 5.1E-12 87.7 18.5 161 197-358 45-222 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.1E-07 1.1E-11 80.3 18.3 124 194-325 12-150 (213)
118 3q7a_A Farnesyltransferase alp 98.8 3.2E-06 1.1E-10 78.5 25.1 175 129-311 65-257 (349)
119 2c2l_A CHIP, carboxy terminus 98.8 4.9E-08 1.7E-12 89.6 12.2 194 222-429 3-198 (281)
120 3u3w_A Transcriptional activat 98.8 2.9E-07 9.8E-12 85.2 17.3 167 122-288 79-264 (293)
121 3q7a_A Farnesyltransferase alp 98.8 7.6E-06 2.6E-10 76.0 26.1 172 167-346 68-257 (349)
122 3u3w_A Transcriptional activat 98.7 2.5E-06 8.5E-11 78.8 22.9 92 230-323 82-182 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.4E-07 2.9E-11 77.5 18.3 129 158-291 11-151 (213)
124 4gco_A Protein STI-1; structur 98.7 4.6E-07 1.6E-11 71.7 14.8 93 227-324 17-109 (126)
125 1a17_A Serine/threonine protei 98.7 8E-07 2.7E-11 74.0 16.5 95 226-325 16-110 (166)
126 4gco_A Protein STI-1; structur 98.7 5.7E-07 2E-11 71.1 14.5 95 191-290 16-110 (126)
127 3gyz_A Chaperone protein IPGC; 98.7 2.2E-07 7.6E-12 75.9 12.3 94 226-324 39-132 (151)
128 1a17_A Serine/threonine protei 98.7 7.3E-07 2.5E-11 74.2 15.9 127 190-322 15-143 (166)
129 1na0_A Designed protein CTPR3; 98.7 7.5E-07 2.6E-11 69.9 14.8 16 163-178 19-34 (125)
130 2qfc_A PLCR protein; TPR, HTH, 98.7 1.3E-06 4.4E-11 80.7 18.5 163 159-321 81-262 (293)
131 1na0_A Designed protein CTPR3; 98.7 1.3E-06 4.4E-11 68.5 15.8 60 263-323 45-104 (125)
132 4f3v_A ESX-1 secretion system 98.6 5.2E-07 1.8E-11 80.9 14.5 189 130-325 18-237 (282)
133 2qfc_A PLCR protein; TPR, HTH, 98.6 4.3E-06 1.5E-10 77.2 21.3 169 189-358 76-264 (293)
134 2lni_A Stress-induced-phosphop 98.6 9.7E-07 3.3E-11 70.2 14.7 95 225-324 18-112 (133)
135 2e2e_A Formate-dependent nitri 98.6 4.2E-07 1.5E-11 76.8 13.1 118 166-289 23-143 (177)
136 4f3v_A ESX-1 secretion system 98.6 1.3E-06 4.4E-11 78.4 16.5 187 165-360 18-237 (282)
137 2vyi_A SGTA protein; chaperone 98.6 7.8E-07 2.7E-11 70.4 13.9 93 227-324 16-108 (131)
138 2e2e_A Formate-dependent nitri 98.6 5.9E-07 2E-11 75.9 13.9 118 236-359 23-143 (177)
139 2lni_A Stress-induced-phosphop 98.6 7.9E-07 2.7E-11 70.8 14.0 96 119-216 17-112 (133)
140 2c2l_A CHIP, carboxy terminus 98.6 1.1E-07 3.9E-12 87.2 9.9 14 310-323 149-162 (281)
141 3gw4_A Uncharacterized protein 98.6 6E-07 2.1E-11 77.7 14.0 64 260-323 25-93 (203)
142 3gyz_A Chaperone protein IPGC; 98.6 1.1E-07 3.8E-12 77.7 8.6 101 259-361 34-134 (151)
143 3gw4_A Uncharacterized protein 98.6 4.8E-07 1.6E-11 78.3 13.2 97 262-358 67-174 (203)
144 3dss_A Geranylgeranyl transfer 98.6 3.9E-05 1.3E-09 70.9 26.3 166 241-414 48-240 (331)
145 2vgx_A Chaperone SYCD; alterna 98.6 4.6E-07 1.6E-11 74.0 11.5 99 259-359 19-117 (148)
146 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4.1E-11 69.3 13.7 117 153-275 12-128 (131)
147 3dss_A Geranylgeranyl transfer 98.6 3.4E-05 1.2E-09 71.3 24.6 174 128-309 39-240 (331)
148 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-06 4.2E-11 82.5 15.2 123 153-280 147-283 (336)
149 1p5q_A FKBP52, FK506-binding p 98.5 1.6E-06 5.4E-11 81.8 15.3 151 167-323 127-292 (336)
150 2vgx_A Chaperone SYCD; alterna 98.5 5.2E-07 1.8E-11 73.7 10.4 97 224-325 22-118 (148)
151 3upv_A Heat shock protein STI1 98.5 3E-06 1E-10 66.8 14.2 95 225-324 6-100 (126)
152 2fbn_A 70 kDa peptidylprolyl i 98.5 2E-07 6.8E-12 80.6 7.6 82 225-311 90-171 (198)
153 2fbn_A 70 kDa peptidylprolyl i 98.5 2.2E-07 7.5E-12 80.3 7.6 131 154-289 39-185 (198)
154 4gcn_A Protein STI-1; structur 98.5 3.3E-06 1.1E-10 66.8 13.3 95 226-324 11-111 (127)
155 1elw_A TPR1-domain of HOP; HOP 98.5 7.2E-06 2.5E-10 63.3 15.0 93 227-324 8-100 (118)
156 1elw_A TPR1-domain of HOP; HOP 98.5 7.9E-06 2.7E-10 63.1 15.0 99 154-254 5-103 (118)
157 2xcb_A PCRH, regulatory protei 98.4 3.3E-06 1.1E-10 68.3 12.4 92 228-324 23-114 (142)
158 2xcb_A PCRH, regulatory protei 98.4 2.4E-06 8.2E-11 69.1 11.6 100 259-360 16-115 (142)
159 3upv_A Heat shock protein STI1 98.4 6E-06 2E-10 65.1 13.4 93 121-215 7-99 (126)
160 1elr_A TPR2A-domain of HOP; HO 98.4 3.9E-06 1.3E-10 66.3 12.1 96 226-325 7-108 (131)
161 4gcn_A Protein STI-1; structur 98.4 6.2E-06 2.1E-10 65.2 12.9 98 261-359 8-111 (127)
162 2kck_A TPR repeat; tetratricop 98.4 3.7E-06 1.3E-10 64.3 11.5 25 264-288 43-67 (112)
163 3q49_B STIP1 homology and U bo 98.4 9.3E-06 3.2E-10 64.9 14.0 95 224-323 10-104 (137)
164 3sz7_A HSC70 cochaperone (SGT) 98.4 8.4E-06 2.9E-10 67.7 13.9 97 224-325 12-108 (164)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 7.1E-06 2.4E-10 68.2 13.1 98 117-216 10-107 (164)
166 2kck_A TPR repeat; tetratricop 98.3 7E-06 2.4E-10 62.8 11.9 100 117-217 5-106 (112)
167 2dba_A Smooth muscle cell asso 98.3 2E-05 6.9E-10 63.8 15.0 96 189-290 29-128 (148)
168 4b4t_Q 26S proteasome regulato 98.3 2.6E-05 9E-10 76.3 18.4 201 124-324 10-244 (434)
169 1hxi_A PEX5, peroxisome target 98.3 5.5E-06 1.9E-10 64.8 10.6 88 196-288 25-112 (121)
170 2dba_A Smooth muscle cell asso 98.3 2.6E-05 9E-10 63.1 15.0 99 222-325 27-128 (148)
171 4b4t_Q 26S proteasome regulato 98.3 8E-05 2.7E-09 72.8 21.1 88 451-538 145-243 (434)
172 3q49_B STIP1 homology and U bo 98.3 1.1E-05 3.7E-10 64.6 12.3 98 187-289 8-105 (137)
173 1elr_A TPR2A-domain of HOP; HO 98.3 8E-06 2.7E-10 64.5 11.1 109 190-302 6-118 (131)
174 2xev_A YBGF; tetratricopeptide 98.2 5.5E-05 1.9E-09 59.6 14.5 94 230-325 9-105 (129)
175 1hxi_A PEX5, peroxisome target 98.2 1.8E-05 6E-10 61.9 10.8 96 156-253 20-115 (121)
176 2xev_A YBGF; tetratricopeptide 98.2 6.3E-05 2.2E-09 59.2 14.4 93 123-216 7-104 (129)
177 3rkv_A Putative peptidylprolyl 98.2 3.5E-05 1.2E-09 63.7 13.3 66 259-325 61-126 (162)
178 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.2E-10 65.5 10.5 99 190-288 11-116 (164)
179 3k9i_A BH0479 protein; putativ 98.1 6.7E-06 2.3E-10 63.9 7.5 60 225-288 29-88 (117)
180 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.5E-10 65.4 10.3 100 190-289 51-157 (164)
181 1ihg_A Cyclophilin 40; ppiase 98.1 4E-05 1.4E-09 73.0 14.0 90 259-350 271-360 (370)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.2E-05 1.1E-09 76.2 13.7 88 224-316 318-405 (457)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.2E-05 1.4E-09 75.3 14.3 96 261-358 317-413 (457)
184 3k9i_A BH0479 protein; putativ 98.1 1.2E-05 4.1E-10 62.4 8.1 89 235-325 2-90 (117)
185 1wao_1 Serine/threonine protei 98.1 1.2E-05 4E-10 79.7 9.8 118 232-355 15-134 (477)
186 1ihg_A Cyclophilin 40; ppiase 98.0 5E-05 1.7E-09 72.4 13.4 121 191-316 226-361 (370)
187 1dce_A Protein (RAB geranylger 98.0 0.00026 8.8E-09 71.4 18.9 171 133-311 44-241 (567)
188 1wao_1 Serine/threonine protei 98.0 1.2E-05 4E-10 79.7 9.0 118 197-320 15-134 (477)
189 1dce_A Protein (RAB geranylger 98.0 0.00035 1.2E-08 70.4 19.3 172 240-419 46-244 (567)
190 3rkv_A Putative peptidylprolyl 98.0 0.0001 3.5E-09 60.8 12.4 65 223-291 63-127 (162)
191 2hr2_A Hypothetical protein; a 98.0 0.00011 3.8E-09 59.4 11.9 98 226-324 14-130 (159)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 2.1E-05 7.3E-10 74.0 8.7 62 225-290 232-293 (338)
193 2hr2_A Hypothetical protein; a 97.9 0.00016 5.5E-09 58.4 11.8 62 225-290 59-131 (159)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 3.8E-05 1.3E-09 72.3 8.4 128 156-290 182-328 (338)
195 3n71_A Histone lysine methyltr 97.8 8.3E-05 2.8E-09 73.2 10.8 126 198-324 319-463 (490)
196 1klx_A Cysteine rich protein B 97.8 0.00087 3E-08 53.5 14.6 10 312-321 77-86 (138)
197 2kat_A Uncharacterized protein 97.8 0.00017 5.8E-09 55.5 9.8 79 241-324 3-81 (115)
198 3n71_A Histone lysine methyltr 97.8 0.00022 7.5E-09 70.2 12.6 91 233-323 319-420 (490)
199 1klx_A Cysteine rich protein B 97.7 0.0014 4.7E-08 52.3 14.8 83 343-431 37-127 (138)
200 2kat_A Uncharacterized protein 97.7 0.00022 7.5E-09 54.8 9.5 53 451-504 29-81 (115)
201 2l6j_A TPR repeat-containing p 97.7 4.4E-05 1.5E-09 58.2 5.1 27 262-288 39-65 (111)
202 1na3_A Designed protein CTPR2; 97.6 0.00049 1.7E-08 49.9 10.1 14 306-319 53-66 (91)
203 1na3_A Designed protein CTPR2; 97.6 0.00061 2.1E-08 49.4 10.1 58 193-251 14-71 (91)
204 1zu2_A Mitochondrial import re 97.6 0.0002 6.8E-09 57.7 7.6 96 237-339 16-132 (158)
205 2l6j_A TPR repeat-containing p 97.6 0.00037 1.3E-08 52.8 9.0 90 260-352 3-99 (111)
206 3ma5_A Tetratricopeptide repea 97.5 0.00069 2.4E-08 50.5 9.2 53 451-504 17-69 (100)
207 1zu2_A Mitochondrial import re 97.4 0.00056 1.9E-08 55.1 7.6 108 164-303 13-131 (158)
208 3ma5_A Tetratricopeptide repea 97.2 0.0017 5.9E-08 48.3 8.8 63 260-323 6-68 (100)
209 3qww_A SET and MYND domain-con 97.2 0.0015 5.2E-08 63.1 10.1 87 454-540 311-411 (433)
210 3ly7_A Transcriptional activat 97.0 0.011 3.9E-07 54.7 13.6 72 259-334 275-346 (372)
211 3ly7_A Transcriptional activat 97.0 0.0094 3.2E-07 55.3 12.9 65 293-359 274-338 (372)
212 3qwp_A SET and MYND domain-con 96.9 0.0061 2.1E-07 58.9 11.6 61 478-538 331-398 (429)
213 3bee_A Putative YFRE protein; 96.8 0.0092 3.2E-07 43.5 9.3 48 457-505 25-72 (93)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0029 9.8E-08 46.7 6.7 55 232-290 9-64 (99)
215 3qww_A SET and MYND domain-con 96.8 0.0046 1.6E-07 59.7 9.2 87 236-323 311-409 (433)
216 3qwp_A SET and MYND domain-con 96.7 0.02 6.8E-07 55.3 13.5 92 232-323 296-398 (429)
217 3bee_A Putative YFRE protein; 96.7 0.016 5.5E-07 42.1 9.8 67 221-291 4-73 (93)
218 3u64_A Protein TP_0956; tetrat 96.7 0.26 8.8E-06 43.9 18.7 93 347-441 179-282 (301)
219 2kc7_A BFR218_protein; tetratr 96.6 0.009 3.1E-07 43.9 7.8 77 451-537 10-87 (99)
220 1pc2_A Mitochondria fission pr 96.6 0.013 4.4E-07 46.6 8.9 83 456-540 13-100 (152)
221 3mkq_A Coatomer beta'-subunit; 96.4 0.11 3.7E-06 55.0 18.3 102 192-323 633-734 (814)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.11 3.6E-06 55.1 17.0 129 122-286 633-761 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.2 0.03 1E-06 41.7 9.1 55 451-505 15-75 (104)
224 3mkq_B Coatomer subunit alpha; 96.2 0.18 6.1E-06 41.2 13.8 101 162-286 14-114 (177)
225 4h7y_A Dual specificity protei 96.1 0.12 4.1E-06 40.6 11.7 52 202-254 74-125 (161)
226 1pc2_A Mitochondria fission pr 96.0 0.043 1.5E-06 43.6 9.2 81 135-216 15-99 (152)
227 3u64_A Protein TP_0956; tetrat 95.7 0.093 3.2E-06 46.7 10.9 87 240-328 180-272 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.7 0.15 5.1E-06 37.8 10.8 26 263-288 48-73 (104)
229 4h7y_A Dual specificity protei 95.4 0.21 7.2E-06 39.2 10.4 117 400-521 12-138 (161)
230 1wy6_A Hypothetical protein ST 94.8 1 3.5E-05 34.6 16.1 54 453-507 103-156 (172)
231 3mkq_B Coatomer subunit alpha; 94.7 1.4 4.8E-05 35.9 16.7 102 269-391 13-114 (177)
232 1nzn_A CGI-135 protein, fissio 94.6 0.19 6.4E-06 38.4 8.2 66 474-539 33-102 (126)
233 3lvg_A Clathrin heavy chain 1; 94.5 2.6E-05 8.8E-10 73.6 -15.8 112 120-246 56-167 (624)
234 1nzn_A CGI-135 protein, fissio 94.2 0.18 6.3E-06 38.4 7.4 66 151-216 33-102 (126)
235 4ady_A RPN2, 26S proteasome re 94.2 6.7 0.00023 41.3 30.2 87 378-469 502-588 (963)
236 2ff4_A Probable regulatory pro 94.0 1 3.6E-05 42.6 14.2 69 264-333 174-247 (388)
237 1wy6_A Hypothetical protein ST 93.6 1.9 6.6E-05 33.1 16.9 66 261-327 91-156 (172)
238 4ady_A RPN2, 26S proteasome re 93.3 9.5 0.00032 40.2 23.4 17 163-179 384-400 (963)
239 4gns_B Protein CSD3, chitin bi 92.9 1.1 3.8E-05 46.0 12.9 125 160-288 255-398 (754)
240 4b4t_P 26S proteasome regulato 92.8 4.5 0.00015 39.0 16.6 153 275-429 30-205 (445)
241 3lvg_A Clathrin heavy chain 1; 91.8 0.13 4.4E-06 49.2 4.1 229 100-351 69-324 (624)
242 4b4t_P 26S proteasome regulato 90.7 12 0.00042 35.9 20.2 175 113-289 51-246 (445)
243 3o48_A Mitochondria fission 1 90.5 3.1 0.00011 31.9 9.9 69 472-540 36-107 (134)
244 2ff4_A Probable regulatory pro 90.5 1.1 3.7E-05 42.5 9.3 71 225-299 173-248 (388)
245 4gns_B Protein CSD3, chitin bi 90.1 1.9 6.6E-05 44.3 11.2 125 192-322 252-397 (754)
246 1y8m_A FIS1; mitochondria, unk 89.6 6.1 0.00021 30.7 11.7 68 473-540 36-106 (144)
247 4fhn_B Nucleoporin NUP120; pro 88.7 9.2 0.00031 42.1 16.1 86 262-349 900-989 (1139)
248 3lpz_A GET4 (YOR164C homolog); 87.7 16 0.00055 33.2 20.6 82 364-469 134-215 (336)
249 3txn_A 26S proteasome regulato 87.0 20 0.00069 33.6 21.9 92 336-427 104-207 (394)
250 1v54_E Cytochrome C oxidase po 87.0 4.1 0.00014 29.4 7.8 64 456-520 25-88 (109)
251 2wpv_A GET4, UPF0363 protein Y 86.2 19 0.00064 32.5 18.0 80 365-468 133-215 (312)
252 3o48_A Mitochondria fission 1 85.9 7.8 0.00027 29.7 9.4 67 150-216 37-106 (134)
253 3txn_A 26S proteasome regulato 85.7 24 0.00081 33.2 22.1 96 228-323 104-208 (394)
254 1v54_E Cytochrome C oxidase po 85.3 8.6 0.00029 27.7 9.6 49 277-325 26-74 (109)
255 4fhn_B Nucleoporin NUP120; pro 85.1 19 0.00066 39.5 16.2 89 295-385 898-990 (1139)
256 3ffl_A Anaphase-promoting comp 84.5 8.2 0.00028 30.9 9.4 62 120-181 22-91 (167)
257 2p58_C Putative type III secre 83.2 10 0.00035 27.2 8.3 79 132-218 21-99 (116)
258 2wpv_A GET4, UPF0363 protein Y 83.2 26 0.00089 31.6 19.3 25 222-246 133-157 (312)
259 2y69_E Cytochrome C oxidase su 82.3 15 0.00051 28.2 9.6 61 277-338 69-129 (152)
260 4b4t_R RPN7, 26S proteasome re 82.0 7.8 0.00027 37.1 10.2 59 369-427 134-194 (429)
261 1qsa_A Protein (soluble lytic 81.9 45 0.0015 33.5 29.6 116 380-504 228-347 (618)
262 3ffl_A Anaphase-promoting comp 81.6 6.4 0.00022 31.5 7.7 59 156-214 23-89 (167)
263 4b4t_R RPN7, 26S proteasome re 79.0 19 0.00066 34.3 11.9 61 155-215 133-195 (429)
264 1zbp_A Hypothetical protein VP 78.6 33 0.0011 30.0 13.6 115 375-505 6-129 (273)
265 2y69_E Cytochrome C oxidase su 78.2 21 0.00071 27.4 9.6 62 312-374 69-130 (152)
266 3esl_A Checkpoint serine/threo 76.5 21 0.00071 29.7 9.5 77 432-511 73-150 (202)
267 3lpz_A GET4 (YOR164C homolog); 76.0 47 0.0016 30.2 20.9 24 120-143 37-60 (336)
268 1y8m_A FIS1; mitochondria, unk 75.6 26 0.0009 27.2 14.0 66 364-429 37-105 (144)
269 1qsa_A Protein (soluble lytic 75.3 72 0.0025 32.1 31.8 335 157-534 76-436 (618)
270 1zbp_A Hypothetical protein VP 74.5 13 0.00043 32.6 8.1 55 232-290 6-60 (273)
271 3esl_A Checkpoint serine/threo 70.0 38 0.0013 28.1 9.6 54 239-294 95-148 (202)
272 2uwj_G Type III export protein 66.0 34 0.0012 24.6 7.9 87 346-441 21-107 (115)
273 2p58_C Putative type III secre 65.2 36 0.0012 24.5 8.8 87 346-441 22-108 (116)
274 2uwj_G Type III export protein 63.7 38 0.0013 24.3 9.5 79 132-218 20-98 (115)
275 1wdy_A 2-5A-dependent ribonucl 59.4 22 0.00075 31.1 7.2 45 343-387 191-237 (285)
276 4a1g_A Mitotic checkpoint seri 57.8 38 0.0013 26.7 7.1 32 259-290 99-130 (152)
277 4a1g_A Mitotic checkpoint seri 57.4 68 0.0023 25.2 8.9 50 385-434 84-134 (152)
278 1k1a_A B-cell lymphoma 3-encod 57.3 25 0.00085 29.8 7.0 85 125-213 13-101 (241)
279 3ltm_A Alpha-REP4; protein eng 55.0 88 0.003 25.7 18.6 18 186-203 31-48 (211)
280 2wvi_A Mitotic checkpoint seri 54.0 46 0.0016 26.6 7.1 32 259-290 94-125 (164)
281 3eu9_A Huntingtin-interacting 51.9 19 0.00064 30.6 5.2 14 159-172 45-58 (240)
282 3ubw_A 14-3-3E, 14-3-3 protein 50.5 1.3E+02 0.0043 26.2 10.0 38 303-340 38-75 (261)
283 2d2s_A Exocyst complex compone 50.0 1.2E+02 0.0041 25.9 9.7 88 303-393 25-118 (235)
284 3kea_A K1L; tropism, ANK repea 49.7 51 0.0017 29.0 7.9 141 127-286 37-183 (285)
285 2wvi_A Mitotic checkpoint seri 49.0 1E+02 0.0034 24.6 9.0 51 385-435 79-130 (164)
286 3eiq_C Programmed cell death p 48.8 1.4E+02 0.0048 27.4 10.6 26 120-145 56-81 (358)
287 4aez_C MAD3, mitotic spindle c 48.7 46 0.0016 28.1 6.6 55 457-511 130-185 (223)
288 1wdy_A 2-5A-dependent ribonucl 47.3 36 0.0012 29.7 6.5 46 455-500 193-240 (285)
289 3eiq_C Programmed cell death p 44.7 1.3E+02 0.0043 27.7 9.6 65 369-434 220-286 (358)
290 4g8k_A 2-5A-dependent ribonucl 43.5 1.3E+02 0.0046 26.9 10.0 42 463-511 288-329 (337)
291 4aez_C MAD3, mitotic spindle c 43.4 61 0.0021 27.4 6.6 49 241-291 132-180 (223)
292 3kea_A K1L; tropism, ANK repea 43.3 91 0.0031 27.3 8.5 14 161-174 36-49 (285)
293 3uzd_A 14-3-3 protein gamma; s 43.2 1.6E+02 0.0055 25.3 9.5 51 418-468 148-201 (248)
294 3iqu_A 14-3-3 protein sigma; s 42.7 1.6E+02 0.0054 25.1 9.2 56 302-357 14-70 (236)
295 2fe3_A Peroxide operon regulat 42.5 84 0.0029 24.3 7.1 62 465-527 11-72 (145)
296 2d2s_A Exocyst complex compone 42.0 1.6E+02 0.0056 25.1 11.1 88 124-214 24-117 (235)
297 2fu4_A Ferric uptake regulatio 41.1 73 0.0025 21.6 5.9 61 466-527 7-68 (83)
298 3hra_A Ankyrin repeat family p 40.9 39 0.0013 27.6 5.4 11 317-327 159-169 (201)
299 1ug3_A EIF4GI, eukaryotic prot 39.5 89 0.003 28.5 7.8 23 227-249 15-37 (339)
300 2xig_A Ferric uptake regulatio 38.1 92 0.0031 24.3 6.7 62 465-527 16-77 (150)
301 1mzb_A Ferric uptake regulatio 37.6 83 0.0028 24.0 6.3 61 466-527 8-69 (136)
302 4ets_A Ferric uptake regulatio 37.4 79 0.0027 25.1 6.3 70 457-527 13-85 (162)
303 3ltm_A Alpha-REP4; protein eng 37.0 1.7E+02 0.0059 23.9 20.2 154 151-324 31-184 (211)
304 3jxi_A Vanilloid receptor-rela 36.3 23 0.00077 30.7 3.2 55 125-179 9-72 (260)
305 1o9d_A 14-3-3-like protein C; 35.6 2.2E+02 0.0075 24.7 9.1 59 265-323 12-73 (260)
306 2ijq_A Hypothetical protein; s 35.6 1.5E+02 0.0052 23.5 7.4 56 414-469 45-103 (161)
307 3eyy_A Putative iron uptake re 35.4 74 0.0025 24.7 5.7 61 465-527 8-68 (145)
308 2qx5_A Nucleoporin NIC96; mRNA 34.9 3.7E+02 0.013 27.1 17.7 44 156-200 155-198 (661)
309 3bu8_A Telomeric repeat-bindin 34.2 1.9E+02 0.0063 24.3 7.8 69 457-527 88-163 (235)
310 4b4t_S RPN3, 26S proteasome re 34.1 3.4E+02 0.012 26.4 12.5 67 188-254 231-301 (523)
311 2zu6_B Programmed cell death p 34.0 1.4E+02 0.0047 26.8 7.9 25 404-428 169-193 (307)
312 2fe3_A Peroxide operon regulat 33.6 1.6E+02 0.0056 22.6 8.2 58 144-202 13-70 (145)
313 1k1a_A B-cell lymphoma 3-encod 33.6 1.9E+02 0.0064 24.0 8.8 20 199-218 17-36 (241)
314 3eyy_A Putative iron uptake re 33.1 1.4E+02 0.0048 23.1 7.0 22 169-190 33-54 (145)
315 2r9g_A AAA ATPase, central reg 33.1 2.1E+02 0.0071 23.7 9.9 47 120-167 13-62 (204)
316 4b4t_S RPN3, 26S proteasome re 32.4 3.6E+02 0.012 26.2 13.5 25 120-144 233-257 (523)
317 2w57_A Ferric uptake regulatio 32.3 96 0.0033 24.2 5.9 62 465-527 6-68 (150)
318 1mzb_A Ferric uptake regulatio 31.5 1.6E+02 0.0056 22.3 7.1 21 168-188 33-53 (136)
319 2ko4_A Mediator of RNA polymer 31.0 92 0.0031 21.1 4.5 40 103-145 24-63 (81)
320 2i2j_A Signaling peptide UA159 30.5 52 0.0018 15.9 2.4 18 14-31 3-20 (26)
321 2ijq_A Hypothetical protein; s 30.4 2E+02 0.007 22.8 8.1 17 453-469 44-60 (161)
322 4gq2_M Nucleoporin NUP120; bet 30.0 2.4E+02 0.0082 30.1 10.3 111 159-275 816-950 (950)
323 2ion_A PDCD4, programmed cell 29.8 1.6E+02 0.0055 23.0 6.8 21 229-249 15-35 (152)
324 2zu6_B Programmed cell death p 29.5 1.1E+02 0.0037 27.5 6.4 65 264-329 169-235 (307)
325 2keb_A DNA polymerase subunit 29.1 1.1E+02 0.0037 21.8 4.9 58 458-517 26-88 (101)
326 4gq2_M Nucleoporin NUP120; bet 28.8 5.3E+02 0.018 27.5 12.7 131 194-345 816-950 (950)
327 2ion_A PDCD4, programmed cell 28.2 1.4E+02 0.0046 23.5 6.1 66 263-329 11-78 (152)
328 2b7e_A PRE-mRNA processing pro 28.1 46 0.0016 21.2 2.6 28 171-198 4-31 (59)
329 2w57_A Ferric uptake regulatio 27.9 1.8E+02 0.0063 22.5 6.9 21 169-189 33-53 (150)
330 3ctd_A Putative ATPase, AAA fa 27.7 2.7E+02 0.0091 23.2 9.5 102 114-216 28-137 (213)
331 2keb_A DNA polymerase subunit 27.3 1.7E+02 0.0058 20.8 6.3 29 418-446 26-54 (101)
332 2npm_A 14-3-3 domain containin 27.2 3.1E+02 0.01 23.8 10.4 39 268-306 35-76 (260)
333 4ets_A Ferric uptake regulatio 26.3 1.4E+02 0.0049 23.6 6.1 46 193-238 37-84 (162)
334 3eu9_A Huntingtin-interacting 25.3 1.8E+02 0.006 24.1 7.1 85 124-221 45-135 (240)
335 2r9g_A AAA ATPase, central reg 24.9 2.9E+02 0.01 22.8 10.1 30 413-443 26-55 (204)
336 2crb_A Nuclear receptor bindin 24.8 1.2E+02 0.004 21.4 4.3 23 479-501 18-40 (97)
337 3ltj_A Alpharep-4; protein eng 24.6 2.7E+02 0.0094 22.3 21.1 49 187-239 58-106 (201)
338 2xig_A Ferric uptake regulatio 24.6 2.5E+02 0.0084 21.8 8.1 44 159-202 32-75 (150)
339 3hra_A Ankyrin repeat family p 24.1 79 0.0027 25.6 4.4 14 281-294 158-171 (201)
340 2nsz_A Programmed cell death p 24.1 2.3E+02 0.0079 21.3 9.3 21 229-249 13-33 (129)
341 3ltj_A Alpharep-4; protein eng 23.2 2.9E+02 0.0099 22.1 20.1 81 186-277 26-106 (201)
342 2cwy_A Hypothetical protein TT 23.1 1.8E+02 0.0062 20.5 5.4 15 415-429 15-29 (94)
343 1zl8_A LIN-7; heterodimer, alp 22.9 1.4E+02 0.0046 18.2 4.3 19 491-509 8-26 (53)
344 2fu4_A Ferric uptake regulatio 22.9 1.8E+02 0.006 19.5 6.6 33 205-237 34-66 (83)
345 2o03_A Probable zinc uptake re 22.3 1.9E+02 0.0064 21.8 5.8 45 194-238 16-60 (131)
346 4g8k_A 2-5A-dependent ribonucl 22.2 4.1E+02 0.014 23.5 12.2 49 377-436 281-329 (337)
347 1wty_A Hypothetical protein TT 22.1 2.4E+02 0.0082 20.8 7.5 77 416-504 3-80 (119)
348 1bpo_A Protein (clathrin); cla 21.2 5.5E+02 0.019 24.6 10.0 135 210-357 348-482 (494)
349 3t8k_A Uncharacterized protein 21.1 3.2E+02 0.011 21.8 8.0 65 302-366 41-109 (186)
350 3t8k_A Uncharacterized protein 21.0 3.2E+02 0.011 21.8 8.6 130 374-508 43-183 (186)
351 2cos_A Serine/threonine protei 20.4 1.1E+02 0.0037 19.0 3.1 11 492-502 38-48 (54)
352 3mwm_A ZUR, putative metal upt 20.4 1.2E+02 0.0041 23.2 4.4 48 123-170 18-65 (139)
353 3mwm_A ZUR, putative metal upt 20.0 1.7E+02 0.0058 22.4 5.2 45 194-238 19-63 (139)
354 3pvs_A Replication-associated 20.0 5.6E+02 0.019 24.2 13.5 152 276-429 166-358 (447)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-37 Score=319.24 Aligned_cols=424 Identities=12% Similarity=0.053 Sum_probs=364.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 009143 96 ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHV 175 (542)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 175 (542)
+.++.+...++.+. +..|+..++..++.+|.+.|++++|+.+|+.+... .++..+++.++.+|.+.|++++|.++
T Consensus 98 g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 98 QQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp TCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 44555555555543 44678889999999999999999999999988653 67889999999999999999999999
Q ss_pred HHHHhhCC---------------CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHH-----------
Q 009143 176 IREMSEMR---------------PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL----------- 229 (542)
Q Consensus 176 ~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------- 229 (542)
|+++.... ..++..+|+.++.+|.+.|++++|+++|++|.+.+. .+...+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHH
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhH
Confidence 98543211 123578999999999999999999999999988642 133333332
Q ss_pred ---------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 009143 230 ---------------------------VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (542)
Q Consensus 230 ---------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 282 (542)
+..|.+.|++++|.++|+++.+. + ++..+++.++.+|.+.|++++|.+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E----KSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G----GCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-C----chHHHHHHHHHHHHHhcCHHHHHH
Confidence 44556778999999999998765 2 789999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009143 283 LWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362 (542)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 362 (542)
+|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+..
T Consensus 327 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 403 (597)
T 2xpi_A 327 ITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD- 403 (597)
T ss_dssp HHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 999999876 5588899999999999999999999999998763 5578899999999999999999999999998853
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009143 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (542)
Q Consensus 363 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 442 (542)
+.+..+|+.++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 481 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNEL 481 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 346789999999999999999999999999987654 88999999999999999999999999998853 3467888888
Q ss_pred HHHhhcccccccCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHH
Q 009143 443 ILAETRGASCNLGHIHLALQLYDEMLRR----GITPD--IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRI 516 (542)
Q Consensus 443 l~~~~~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 516 (542)
... +.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..
T Consensus 482 ~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 555 (597)
T 2xpi_A 482 GVV-----AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTA 555 (597)
T ss_dssp HHH-----HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred HHH-----HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 887 77889999999999999875 66788 7899999999999999999999999999875 348899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 517 LKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
+..+|.+.|++++|.++|+++++.+
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-35 Score=302.94 Aligned_cols=405 Identities=14% Similarity=0.071 Sum_probs=350.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCChhhHHHHH
Q 009143 96 ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK---------------GTVPDVLTHNYLV 160 (542)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li 160 (542)
+..+.+...++... ..++++.+++.++..|.+.|++++|+.+|+++... |..++..+|+.++
T Consensus 131 g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 131 GDYARAKCLLTKED---LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp TCHHHHHHHHHHTC---GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh---ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 45666667776654 45789999999999999999999999999953322 2234588999999
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHH--------------------------------------HHHHHHcC
Q 009143 161 NELCKIGDLEKADHVIREMSEMRPSPNCATYNAF--------------------------------------ITGYCRVN 202 (542)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~g 202 (542)
.+|.+.|++++|.++|+++.+.++. +...+..+ +..|.+.|
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999987653 34443333 55566789
Q ss_pred ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 009143 203 ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (542)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 282 (542)
++++|.++|+++.+. +++..++..++.+|.+.|++++|.++|+++.+.++ .+..+++.++.++.+.|++++|.+
T Consensus 287 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 287 ELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP----YNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp HHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999865 58999999999999999999999999999998776 678899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009143 283 LWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362 (542)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 362 (542)
+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998765 6789999999999999999999999999998863 4468899999999999999999999999999864
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--H
Q 009143 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GVSSN--V 436 (542)
Q Consensus 363 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~ 436 (542)
+.+..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|+++.+. +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 457889999999999999999999999999987654 8899999999999999999999999999875 66787 7
Q ss_pred HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHH
Q 009143 437 FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRI 516 (542)
Q Consensus 437 ~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 516 (542)
.+|..+..+ +.+.|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+... .+...+..
T Consensus 517 ~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~ 589 (597)
T 2xpi_A 517 ATWANLGHA-----YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDL 589 (597)
T ss_dssp HHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHH-----HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 889999887 778899999999999999864 34789999999999999999999999999999743 35666666
Q ss_pred HHHHH
Q 009143 517 LKKRY 521 (542)
Q Consensus 517 l~~~~ 521 (542)
+..+|
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-28 Score=239.72 Aligned_cols=384 Identities=15% Similarity=0.069 Sum_probs=333.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCC
Q 009143 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (542)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (542)
+...+.+.|++++|+..++.+.+.. +.+...+..+...+.+.|++++|...++...+..| .+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 4556788999999999999998863 33566778888889999999999999999988765 578899999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 009143 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL 283 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 283 (542)
+++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.++++++..+ .+...+..+...+...|++++|.+.
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP----DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT----TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999998753 33566899999999999999999999999999876 7778899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009143 284 WNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363 (542)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (542)
|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+..+.. +
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 99999875 5678899999999999999999999999999874 4457788999999999999999999999988864 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009143 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (542)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 443 (542)
.+..++..+...+.+.|++++|.+.++++.+.++. +..+|..+..++.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 35788999999999999999999999999997654 78899999999999999999999999998853 45667777777
Q ss_pred HHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHh
Q 009143 444 LAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRR 523 (542)
Q Consensus 444 ~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 523 (542)
.. +...|++++|.+.++++.+.. +.+..++..++.+|.+.|++++|...++++.+..+ .+...|..+...+..
T Consensus 313 ~~-----~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 313 NI-----KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKE 385 (388)
T ss_dssp HH-----HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred HH-----HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHH
Confidence 66 778899999999999999852 34578899999999999999999999999998632 356777888877776
Q ss_pred cCC
Q 009143 524 MKE 526 (542)
Q Consensus 524 ~g~ 526 (542)
.|+
T Consensus 386 ~~~ 388 (388)
T 1w3b_A 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred ccC
Confidence 653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.3e-28 Score=235.65 Aligned_cols=365 Identities=15% Similarity=0.066 Sum_probs=320.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 238 (542)
+...+.+.|++++|.+.++.+.+..| .+...+..+...+.+.|++++|...++...+. .+.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC
Confidence 45667889999999999999988765 36777888889999999999999999998875 35578899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009143 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAY 318 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 318 (542)
+++|.+.|++++...+ .+..+|..++.++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 83 ~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP----DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999776 778899999999999999999999999999875 45567788899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009143 319 FCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV 398 (542)
Q Consensus 319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (542)
|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+.
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99999873 4457889999999999999999999999999864 345778899999999999999999999999987654
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHH
Q 009143 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIIT 478 (542)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 478 (542)
+..++..+..++.+.|++++|...|+++.+.. +.+..+|..+... +.+.|++++|.+.++++.+.. +.+..+
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~al~~~-p~~~~~ 307 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA-----LKEKGSVAEAEDCYNTALRLC-PTHADS 307 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHhhC-cccHHH
Confidence 78899999999999999999999999999853 2235567666665 678899999999999999863 457789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 479 YTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
+..++..+...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++++.+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998863 3467889999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.7e-30 Score=258.20 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HH
Q 009143 279 QALALWNDMFQKNIQTDI-VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK---------LD 348 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------~~ 348 (542)
.+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555566555544443 34666777777777777777777777777777777777777777766543 45
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009143 429 SFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 488 (542)
Q Consensus 429 ~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 488 (542)
+.|+.||..||+++|.+ +++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~-----~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKV-----SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHH-----HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666655 45556666666666666665566666666665555544
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.9e-30 Score=257.88 Aligned_cols=205 Identities=20% Similarity=0.228 Sum_probs=180.9
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--------
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD-------- 311 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------- 311 (542)
..+..+.+++.+.+... .....++.+|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~--spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQ--SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhcccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 34556666676665522 34456888999999999999999999999999999999999999999987764
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 009143 312 -ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLL 390 (542)
Q Consensus 312 -~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 390 (542)
.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 009143 391 SMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (542)
Q Consensus 391 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 446 (542)
+|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..+
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999874
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.5e-25 Score=221.74 Aligned_cols=409 Identities=11% Similarity=-0.014 Sum_probs=300.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
...|......+.+.|++++|+..|+++++.. |+..++..+..+|.+.|++++|.+.++++.+..| .+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4467788889999999999999999999874 7899999999999999999999999999998776 477899999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH----------------------------
Q 009143 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEV---------------------------- 249 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------------------------- 249 (542)
+.+.|++++|...|+++...+ +++......++..+........+.+.+..+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998875 334444444443333322222221111100
Q ss_pred ------HhCCCCC-------CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 009143 250 ------LADDDGK-------ATSDVITSTILMDSYFK---NGDKFQALALWNDMFQ-----KNI--------QTDIVAYN 300 (542)
Q Consensus 250 ------~~~~~~~-------~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 300 (542)
....... .+.+...+..+...+.. .|++++|...++++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 0000000 01225555555555554 7888888888888877 310 23456777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 009143 301 VLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (542)
Q Consensus 301 ~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (542)
.+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888888764 337778888888888888888888888887753 345667888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHH
Q 009143 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLA 460 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A 460 (542)
++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+... +...|++++|
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~-----~~~~~~~~~A 391 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEI-----LTDKNDFDKA 391 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH-----HHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHH-----HHHCCCHHHH
Confidence 888888888888877654 67788888888888888888888888887742 1233444444443 6677888888
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHH
Q 009143 461 LQLYDEMLRRGI-TPD----IITYTELIKGHCA---RGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARD 532 (542)
Q Consensus 461 ~~~~~~~~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 532 (542)
...++++.+... .++ ...|..++..+.. .|++++|...++++.+... .+...+..+...|.+.|++++|.+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888876311 112 3378888888888 8888888888888887642 366777888888888888888888
Q ss_pred HHHHHhhcC
Q 009143 533 IHQKWLLRN 541 (542)
Q Consensus 533 ~~~~~l~~~ 541 (542)
.|+++++.+
T Consensus 471 ~~~~a~~~~ 479 (514)
T 2gw1_A 471 LFEESADLA 479 (514)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 888887654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.2e-23 Score=207.60 Aligned_cols=307 Identities=14% Similarity=0.119 Sum_probs=263.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
.++..|..+...+.+.|++++|+.+|+++++.. +.+..++..++..|...|++++|.+.|+++.+.++ .+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 567789999999999999999999999999863 44788999999999999999999999999998776 4688999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCCh----HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCCC
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNR----VTHNIL------------VHALCKKGLLGDAVKFLGEVLADDDGKATS 259 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 259 (542)
.+|.+.|++++|.+.|+++.+.. |+. ..+..+ ...+...|++++|.+.++++++..+ .
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~ 175 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV----W 175 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----T
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C
Confidence 99999999999999999998753 443 455544 4458899999999999999998776 7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH--
Q 009143 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTL-- 337 (542)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-- 337 (542)
+..++..++.+|.+.|++++|.+.|+++.+.. +.+..+|..++..+...|++++|+..|+++.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 88999999999999999999999999998765 5678999999999999999999999999998763 2334444444
Q ss_pred ----------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009143 338 ----------LNCLCKQGKLDEASHFYGVLSKTGVAPD-----QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH 402 (542)
Q Consensus 338 ----------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (542)
...+.+.|++++|...|+.+.+.. |+ ...+..+...+.+.|++++|...++++.+..+. +..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHH
Confidence 788899999999999999998853 44 347788888999999999999999999876543 788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009143 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF 437 (542)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 437 (542)
.|..+..+|...|++++|...|+++.+. .|+..
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 363 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQ 363 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchH
Confidence 9999999999999999999999999884 55543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.4e-23 Score=205.44 Aligned_cols=317 Identities=16% Similarity=0.098 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHH
Q 009143 136 TALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMA 215 (542)
Q Consensus 136 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (542)
.+...+.++.... +.+...+..++..+.+.|++++|.++|+++.+..+ .+..+|..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455554432 33566777777788888888888888888776554 367777777888888888888888888877
Q ss_pred HCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcH---HHHHHHHHH------------HHhcCCHHHH
Q 009143 216 NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV---ITSTILMDS------------YFKNGDKFQA 280 (542)
Q Consensus 216 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~g~~~~a 280 (542)
+.+ +.+..++..+...+.+.|++++|.+.++++++..+ .+. ..+..++.. +.+.|++++|
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP----SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 653 33566777777778888888888888888877665 555 666666443 5566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 281 LALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
...++++.+.. +.+..++..++.++.+.|++++|++.|+++.+.. +.+..++..+...|...|++++|...++.+.+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666665543 3455556666666666666666666666665542 334555666666666666666666666665543
Q ss_pred CCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 009143 361 GVAPDQISYKTI------------IQGLCIHGDIVKAREFLLSMLEKSVVPE----PHIWNVIIDGYGRCGDLSNAFSIR 424 (542)
Q Consensus 361 ~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 424 (542)
. +.+...+..+ ...+.+.|++++|...++++.+..+. + ...|..+..++.+.|++++|...+
T Consensus 241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 1122222222 34444445555555555554443221 1 223444444444445555555444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh
Q 009143 425 DLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 425 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
+++.+.. +.+...|..+..+ +...|++++|...++++.+
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEA-----YLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhC-cccHHHHHHHHHH-----HHHhcCHHHHHHHHHHHHH
Confidence 4444421 1123333333333 3344444444444444444
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.4e-22 Score=206.61 Aligned_cols=406 Identities=14% Similarity=0.056 Sum_probs=307.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
....|..+...+.+.|++++|+..|+++++.. +.++.++..+..+|.+.|++++|.+.++++.+..| .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34578888999999999999999999999874 34788999999999999999999999999998776 47889999999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CCCcHH-----------
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK---ATSDVI----------- 262 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~----------- 262 (542)
++...|++++|...|+.+.. .|+.. ...+..+...+....|...+++++...+.. ..++..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974422 23321 222334445555677888888776542100 001111
Q ss_pred -------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHh
Q 009143 263 -------------------TSTILMDSYF--------KNGDKFQALALWNDMFQKNIQTD-------IVAYNVLINGFCL 308 (542)
Q Consensus 263 -------------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 308 (542)
....+...+. ..|++++|..+++++.+.. +.+ ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 2222222222 2257899999999998764 333 3357777788899
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 009143 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREF 388 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 388 (542)
.|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999987 5668888889999999999999999999998864 34678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHH
Q 009143 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEML 468 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~ 468 (542)
++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+... +...|++++|.+.++++.
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI-----LTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH-----HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH-----HHHhCCHHHHHHHHHHHH
Confidence 9999987654 67889999999999999999999999998853 2233455555444 678899999999999988
Q ss_pred hCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 009143 469 RRG-----ITPDIITYTELIKGHCAR----------GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDI 533 (542)
Q Consensus 469 ~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 533 (542)
+.. .......+..+..++... |++++|...++++.+... .+...+..+...|.+.|++++|.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHH
Confidence 632 111223345556778888 999999999999998643 4678899999999999999999999
Q ss_pred HHHHhhcC
Q 009143 534 HQKWLLRN 541 (542)
Q Consensus 534 ~~~~l~~~ 541 (542)
|+++++.+
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99997754
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.2e-22 Score=203.90 Aligned_cols=395 Identities=10% Similarity=0.004 Sum_probs=305.6
Q ss_pred hhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 009143 96 ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHV 175 (542)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 175 (542)
+.++.+...++... ...|++.+|..+...+.+.|++++|+..++++++.. +.+..++..++.+|.+.|++++|...
T Consensus 20 g~~~~A~~~~~~al---~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 20 KKYDDAIKYYNWAL---ELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp SCHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHH---hcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44455555554433 224788999999999999999999999999999874 34678899999999999999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHH-----------------------------------HCCC-
Q 009143 176 IREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMA-----------------------------------NNGI- 219 (542)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------------~~g~- 219 (542)
|+++.+.++ ++......++..+........+.+.+..+. ....
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999998776 344444444444443322222222221111 0000
Q ss_pred --------CCChHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----C--CCCC---CCCcHHHHHHHHHHHHhcCCHH
Q 009143 220 --------RPNRVTHNILVHALCK---KGLLGDAVKFLGEVLA-----D--DDGK---ATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 220 --------~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~---~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
+.+...+......+.. .|++++|...++++++ . .+.. .+.+..++..++..+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 1113444445554554 8999999999999988 4 2201 0145678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
+|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 338889999999999999999999999998874 4467789999999999999999999999998
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--
Q 009143 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-SSN-- 435 (542)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-- 435 (542)
+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.+... .++
T Consensus 332 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 332 ELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 864 335778888999999999999999999999987544 678899999999999999999999999887321 122
Q ss_pred --HHHHHHHHHHhhcccccc---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcC
Q 009143 436 --VFTFNALILAETRGASCN---LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 436 --~~~~~~ll~~~~~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (542)
...+..+... +.. .|++++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.+..
T Consensus 410 ~~~~~~~~l~~~-----~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 410 VGIAPLVGKATL-----LTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSHHHHHHHHH-----HHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-----HhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2255555554 566 899999999999999853 3356888999999999999999999999999864
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=9.8e-20 Score=175.11 Aligned_cols=302 Identities=14% Similarity=0.102 Sum_probs=230.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
|+..+..+...+.+.|++++|+..|+++++.. +.+..++..+...+...|++++|.+.++++.+..| .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 45578888899999999999999999999864 34678899999999999999999999999988765 36788999999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCC----ChHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCCCc
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRP----NRVTHNIL------------VHALCKKGLLGDAVKFLGEVLADDDGKATSD 260 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (542)
.+...|++++|...++++.+. .| +...+..+ ...+...|++++|.+.++++.+..+ .+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~ 153 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV----WD 153 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----Cc
Confidence 999999999999999999875 34 34444444 5777888888888888888888776 67
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-----
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYN----- 335 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~----- 335 (542)
..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 7888888888888888888888888888765 5677888888888888888888888888888763 22233222
Q ss_pred -------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009143 336 -------TLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ----ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIW 404 (542)
Q Consensus 336 -------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (542)
.+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|...+++..+..+. +...+
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 2245567777777777777777664321 22 12334556677777777777777777765433 66677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 405 NVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
..+...+...|++++|...|+++.+.
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777763
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=7.8e-20 Score=175.81 Aligned_cols=333 Identities=15% Similarity=0.077 Sum_probs=203.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHH
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 232 (542)
+..+..+...+...|++++|.+.|+++.+..| .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 44556666666666777777777766666544 245666666666666666666666666666542 2244556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 312 (542)
+...|++++|.+.++++.+..+ ....+...+..+...+. ...+..+...+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNP-SEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcCC-cccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 6666666666666666665432 00012222222211000 01112224556666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSM 392 (542)
Q Consensus 313 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 392 (542)
++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666553 3345566666666666677777777666666543 335566666666666677777777777766
Q ss_pred HhCCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHhhcccccccC
Q 009143 393 LEKSVVPEPHIWN------------VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT-----FNALILAETRGASCNLG 455 (542)
Q Consensus 393 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-----~~~ll~~~~~~~~~~~g 455 (542)
.+..+. +...+. .+...+.+.|++++|...++++.+.. |+... +..+... +...|
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~-----~~~~~ 286 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHC-----FSKDE 286 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHH-----HHHTT
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH-----HHHcc
Confidence 654432 333322 33666888889999999988888743 33221 2222222 66789
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHh
Q 009143 456 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRR 523 (542)
Q Consensus 456 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 523 (542)
++++|.+.+++..+.. +.+..+|..+..++...|++++|...++++.+..+ .+...+..+..+...
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 9999999999888752 33678888899999999999999999999888632 245556666555443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.7e-19 Score=183.77 Aligned_cols=370 Identities=11% Similarity=0.076 Sum_probs=285.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
.++.+|..+...+.+.|++++|+..++++++.. +.+..++..+...+...|++++|.+.|+ .....+.+. ...+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~ 130 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GASI 130 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHHH
Confidence 577899999999999999999999999999874 3467889999999999999999999996 444333222 2234
Q ss_pred HHHHHcCChhhHHHHHHHHHHC------CCCCChHH------------------------------HHHHHHHHH-----
Q 009143 196 TGYCRVNELDKALHLFSTMANN------GIRPNRVT------------------------------HNILVHALC----- 234 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~------------------------------~~~l~~~~~----- 234 (542)
..+...+...+|...++++... ...|+... ...+...+.
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 4455556667888888887542 11222221 112222111
Q ss_pred ---hcCChhHHHHHHHHHHhCCCCCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 235 ---KKGLLGDAVKFLGEVLADDDGKATSD-------VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 235 ---~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
..|++++|..+++++++..+ .+ ..++..+...+...|++++|...++++.+.. |+...+..+..
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 284 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANT----VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--C----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCC----CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHH
Confidence 12578999999999998776 33 3357778888999999999999999999874 55889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 009143 305 GFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 384 (542)
.+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999874 4467889999999999999999999999998864 3356788999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHhhccccccc-----
Q 009143 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-SS----NVFTFNALILAETRGASCNL----- 454 (542)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~----- 454 (542)
|...++++.+..+. +...+..+...+...|++++|...|+++.+... .+ ....+...... +...
T Consensus 363 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~-----~~~~~~~~~ 436 (537)
T 3fp2_A 363 SEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI-----LARQSSQDP 436 (537)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH-----HHHHHTC--
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-----HHHHhhccc
Confidence 99999999987654 678999999999999999999999999876321 01 11111111111 4445
Q ss_pred -----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcC
Q 009143 455 -----GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 455 -----g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (542)
|++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.++++.+..
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999853 3356889999999999999999999999999864
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.9e-17 Score=166.35 Aligned_cols=372 Identities=12% Similarity=0.006 Sum_probs=303.9
Q ss_pred CChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCC
Q 009143 116 TDYRRHVAVIRDLCL----GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK----IGDLEKADHVIREMSEMRPSPN 187 (542)
Q Consensus 116 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 187 (542)
.++..+..+...|.. .+++++|+..|++..+.| ++..+..|...|.. .+++++|.+.|++..+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466777888888887 899999999999999875 67788899999998 899999999999998864 5
Q ss_pred HHhHHHHHHHHHH----cCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCCC
Q 009143 188 CATYNAFITGYCR----VNELDKALHLFSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATS 259 (542)
Q Consensus 188 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 259 (542)
...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------ 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------
Confidence 6777888888888 789999999999998875 67788888888887 889999999999998853
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCH
Q 009143 260 DVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDV 331 (542)
Q Consensus 260 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~p~~ 331 (542)
+...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56788889999988 899999999999999875 67788888888886 889999999999998865 55
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHH
Q 009143 332 ITYNTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH-----GDIVKAREFLLSMLEKSVVPEPH 402 (542)
Q Consensus 332 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~ 402 (542)
..+..+...|.. .++.++|...|+...+.| +...+..+...|... +++++|...+++..+.+ +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 677777778877 899999999999998765 566777788888877 89999999999999875 567
Q ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009143 403 IWNVIIDGYGRCG---DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITY 479 (542)
Q Consensus 403 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 479 (542)
.+..+...|...| ++++|.+.|++..+.+ +...+..+-..+.. +....+++++|.+.|++..+.| +...+
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~-g~g~~~~~~~A~~~~~~A~~~~---~~~a~ 402 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQ-GKGVKKDEQQAAIWMRKAAEQG---LSAAQ 402 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence 8888888888766 8899999999999864 34444444333211 1122689999999999999865 56788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhHcCCC-C-ChhHHHHHHHHH
Q 009143 480 TELIKGHCA----RGNMKEAEEVFAKIQTLGLA-I-DHIPFRILKKRY 521 (542)
Q Consensus 480 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~l~~~~ 521 (542)
..|...|.. .+++++|...|++..+.+.. | +......+...+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 889999988 89999999999999997643 2 333444444333
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.4e-19 Score=169.26 Aligned_cols=294 Identities=12% Similarity=0.025 Sum_probs=231.6
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 009143 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (542)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (542)
.+.++..+..+...+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...++++.+..+ .+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 44667778888888889999999999999988764 33566777788888899999999999999888665 36778888
Q ss_pred HHHHHHHcC-ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 009143 194 FITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (542)
Q Consensus 194 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (542)
+...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++++++..+ .+...+..+...+.
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK----GCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT----TCSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHH
Confidence 888888998 8999999999988763 33567788888899999999999999999888776 56677777888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhc
Q 009143 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG--------FLPDVITYNTLLNCLCKQ 344 (542)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~ 344 (542)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999888775 5677888888888889999999999888887642 123356777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCh
Q 009143 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY-GRCGDL 417 (542)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~ 417 (542)
|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.++++.+..+. +...+..+..++ ...|+.
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCch
Confidence 88888888888887754 335667777888888888888888888888776543 667777777776 444543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=7.4e-17 Score=162.12 Aligned_cols=365 Identities=13% Similarity=0.085 Sum_probs=305.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH----cCChhhH
Q 009143 136 TALWLRRKMIQKGTVPDVLTHNYLVNELCK----IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR----VNELDKA 207 (542)
Q Consensus 136 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 207 (542)
.+...+....+.| ++..+..+...|.. .+++++|.+.|++..+.+ +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566665544 77888888888888 899999999999998864 56788889999998 8999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh----cCCHHH
Q 009143 208 LHLFSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQ 279 (542)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 279 (542)
.+.|++..+.| +...+..|...|.. .+++++|.+.+++..+.+ +...+..|...|.. .++.++
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------RDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999998865 67778888888988 889999999999998854 45678888888887 889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 009143 280 ALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEAS 351 (542)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 351 (542)
|.+.|++..+.+ +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 78888999999988 899999999999999875 56778888888886 78999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChHHHHH
Q 009143 352 HFYGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-----GDLSNAFS 422 (542)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~ 422 (542)
.+|+...+.| +...+..+...|.. .++.++|.+.+++..+.+ +...+..+...|... +++++|..
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999998865 46677777778877 899999999999998864 667888888888887 89999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhcccccccC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 009143 423 IRDLMLSFGVSSNVFTFNALILAETRGASCNLG---HIHLALQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEA 495 (542)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A 495 (542)
.|++..+.+ +...+..+-.. +...| +.++|.++|++..+.| ++..+..+...|.. .+++++|
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~-----y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAI-----YFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHH-----HHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHH-----HHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999999865 22333333332 22224 7899999999999864 67888899999998 8999999
Q ss_pred HHHHHHHhHcCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhhcC
Q 009143 496 EEVFAKIQTLGLAIDHIPFRILKKRYRR----MKESDKARDIHQKWLLRN 541 (542)
Q Consensus 496 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 541 (542)
...+++..+.| +...+..+...|.. .++.++|.++|+++++.+
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999874 57788889999988 899999999999998653
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=2.2e-17 Score=167.65 Aligned_cols=410 Identities=9% Similarity=0.017 Sum_probs=301.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
.|...|..++. +.+.|++++|..+|+++++. .+.+...|...+..+.+.|++++|.++|+++.... |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 47779999998 47889999999999999986 34467789999999999999999999999998865 5777887777
Q ss_pred HHH-HHcCChhhHHH----HHHHHHHC-CCCC-ChHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCCC
Q 009143 196 TGY-CRVNELDKALH----LFSTMANN-GIRP-NRVTHNILVHALCK---------KGLLGDAVKFLGEVLADDDGKATS 259 (542)
Q Consensus 196 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~ 259 (542)
... ...|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|.++|++.++. +.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~--~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMI--N 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCT--T
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhh--h
Confidence 533 45688887766 77766543 5444 45677777776654 68899999999999983 211 2
Q ss_pred cHHHHHHHHHHH-------------HhcCCHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHhC
Q 009143 260 DVITSTILMDSY-------------FKNGDKFQALALWNDM------FQKN---IQTD--------IVAYNVLINGFCLN 309 (542)
Q Consensus 260 ~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~li~~~~~~ 309 (542)
....|....... .+.++++.|..++..+ .+.. ++|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 234444333211 1245677777777663 2221 2443 24565555443322
Q ss_pred ----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCChh
Q 009143 310 ----GDI----SSAFAYFCQMLKRGFLPDVITYNTLLNCLCK-------QGKLD-------EASHFYGVLSKTGVAPDQI 367 (542)
Q Consensus 310 ----~~~----~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~ 367 (542)
++. +.+..+|+++.... +.+...|...+..+.+ .|+++ +|..++++..+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 232 47788999988863 4467788888887775 78887 8999999988632344678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP-HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 446 (542)
.+..++..+.+.|++++|..+++++++..+. +. ..|...+..+.+.|++++|.++|++..+... .+...|.......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHH
Confidence 8999999999999999999999999986433 33 5899999999999999999999999998531 1222222211110
Q ss_pred hcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCC-CCC--hhHHHHHHHHHHh
Q 009143 447 TRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL-AID--HIPFRILKKRYRR 523 (542)
Q Consensus 447 ~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~--~~~~~~l~~~~~~ 523 (542)
+...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+.....
T Consensus 401 ----~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 401 ----YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp ----HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred ----HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 235799999999999998852 23578899999999999999999999999998642 232 4478888888899
Q ss_pred cCChhHHHHHHHHHhhc
Q 009143 524 MKESDKARDIHQKWLLR 540 (542)
Q Consensus 524 ~g~~~~A~~~~~~~l~~ 540 (542)
.|+.+.+.++++++++.
T Consensus 476 ~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTA 492 (530)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999998653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=6.8e-19 Score=167.20 Aligned_cols=285 Identities=12% Similarity=0.027 Sum_probs=235.2
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHH
Q 009143 149 TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI 228 (542)
Q Consensus 149 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (542)
...+...+..++..+...|++++|.++|+++.+..| .+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 345677888889999999999999999999988765 356677778888999999999999999998763 346788888
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009143 229 LVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (542)
Q Consensus 229 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (542)
+...+...| ++++|.+.+++++...+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK----TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT----TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 999999999 99999999999998876 677889999999999999999999999998875 445677778999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHhc
Q 009143 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG--------VAPDQISYKTIIQGLCIH 379 (542)
Q Consensus 308 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~ 379 (542)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. .+....++..+...+...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998774 4467888889999999999999999998887642 133456888888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 009143 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN-VFTFNALIL 444 (542)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~ 444 (542)
|++++|...++++.+..+. +...+..+...+.+.|++++|...|+++.+. .|+ ...+..+..
T Consensus 250 g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 312 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGH 312 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHH
Confidence 9999999999998887654 7788888899999999999999999888774 443 344444443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.6e-19 Score=173.00 Aligned_cols=267 Identities=15% Similarity=0.079 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (542)
.+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555555544443 3344444444445555555555555555444432 223444444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHH---------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 009143 343 KQGKLDEASHFYGVLSKTGVAPDQISYK---------------TIIQGLCIHGDIVKAREFLLSMLEKSVVP-EPHIWNV 406 (542)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 406 (542)
..|++++|...++.+.+.... +...+. ..+..+...|++++|...++++.+..+.. +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 555555555555544443211 111111 01223337788889999998888765432 5788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009143 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 486 (542)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 486 (542)
+...|.+.|++++|...|+++.+.. +.+...+..+... +...|++++|...++++.+.. +.+...+..+..+|
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGAT-----LANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 8889999999999999998888742 2245566666555 667899999999999988753 33568889999999
Q ss_pred HhcCCHHHHHHHHHHHhHcCCCC----------ChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 487 CARGNMKEAEEVFAKIQTLGLAI----------DHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
.+.|++++|...++++.+..... ...+|..+..+|...|+.++|..++++.++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 99999999999999988742211 167899999999999999999998876553
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=7.3e-19 Score=169.87 Aligned_cols=288 Identities=16% Similarity=0.052 Sum_probs=198.5
Q ss_pred hcCChHHHHH-HHHHHHhCCCC-C--ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChh
Q 009143 130 LGGKIGTALW-LRRKMIQKGTV-P--DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (542)
Q Consensus 130 ~~g~~~~A~~-~~~~m~~~g~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (542)
..|++++|+. .+++....... | +...+..+...+.+.|++++|...|+++.+..| .+..++..+..++.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 66655443111 1 345566777777777777777777777777654 35667777777777777777
Q ss_pred hHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHH---------------HHHH
Q 009143 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI---------------LMDS 270 (542)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~~ 270 (542)
+|...++++.+.. +.+..++..+...+...|++++|.+.+++++...+ .+...+.. .+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP----AYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST----TTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 7777777776653 33566777777777777777777777777777655 22222221 1333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009143 271 YFKNGDKFQALALWNDMFQKNIQT--DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (542)
+...|++++|...++++.+.. +. +..++..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 337888888888888887764 22 57788888888888888888888888887763 345677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChH
Q 009143 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP----------EPHIWNVIIDGYGRCGDLS 418 (542)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~ 418 (542)
+|...++++.+.. +.+..++..+...|.+.|++++|...++++.+..+.. ...+|..+..+|...|+++
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 8888888887753 3456778888888888888888888888877643321 2677888888888888888
Q ss_pred HHHHHHHH
Q 009143 419 NAFSIRDL 426 (542)
Q Consensus 419 ~A~~~~~~ 426 (542)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 88877664
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.3e-17 Score=163.96 Aligned_cols=386 Identities=10% Similarity=-0.044 Sum_probs=246.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C---CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC----
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-----G---TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR---- 183 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---- 183 (542)
.....||.|...+...|++++|++.|++.++. + ......+|+.+...|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34557899999999999999999999987652 1 12235678889999999999999999998876521
Q ss_pred -C-C-CCHHhHHHHHHHHHHc--CChhhHHHHHHHHHHCCCCCChHHHHHHHHH---HHhcCChhHHHHHHHHHHhCCCC
Q 009143 184 -P-S-PNCATYNAFITGYCRV--NELDKALHLFSTMANNGIRPNRVTHNILVHA---LCKKGLLGDAVKFLGEVLADDDG 255 (542)
Q Consensus 184 -~-~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~ 255 (542)
+ . ....++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++.++..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 1 1345666666555554 46899999999988753 2244555555544 3456788899999999988776
Q ss_pred CCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 009143 256 KATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV 331 (542)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 331 (542)
.+..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|...|++++|++.++++.+.. +.+.
T Consensus 207 ---~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 207 ---DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp ---SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred ---cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 677777777666555 456788999999888765 6678888899999999999999999999988763 3345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009143 332 ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY 411 (542)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 411 (542)
.++..+...|...+.... ... . ..........+..++|...+++..+.++. +...+..+...|
T Consensus 282 ~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~ 344 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHH
Confidence 666666665543211110 100 0 00000111123456788888887776543 566778888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009143 412 GRCGDLSNAFSIRDLMLSFGVSSNVF--TFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 489 (542)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 489 (542)
...|++++|...|++..+....|... .+..+... .....|+.++|+..|++..+. .|+.....
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~--------- 409 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF----QLYQMKCEDKAIHHFIEGVKI--NQKSREKE--------- 409 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH----HHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------
Confidence 88888888888888888754333221 11111111 134568888898888888875 44433222
Q ss_pred CCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 009143 490 GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 541 (542)
Q Consensus 490 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 541 (542)
+....+.+++++..+.. +.+..+|..+..+|...|++++|.+.|+++++.+
T Consensus 410 ~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22234455666665543 3467788888888888899999999998888753
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.2e-16 Score=159.85 Aligned_cols=390 Identities=9% Similarity=-0.052 Sum_probs=251.2
Q ss_pred chhHHHHHHHHH--HhhHHHHHHHHh----hCCCCCC--CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C
Q 009143 83 PQAVFNALDLIL--KENLDRLKTMRD----TGPVRCT--LET-DYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-----G 148 (542)
Q Consensus 83 ~~~~~~~l~~~~--~~~~~~~~~~~~----~~~~~~~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 148 (542)
...+++.|-.++ .+..+.+...++ ..+...+ ..| ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345677665554 344444444443 3221111 123 3458999999999999999999999987653 1
Q ss_pred -CC-CChhhHHHHHHHHHHc--CChhHHHHHHHHHhhCCCCCCHHhHHHHHHH---HHHcCChhhHHHHHHHHHHCCCCC
Q 009143 149 -TV-PDVLTHNYLVNELCKI--GDLEKADHVIREMSEMRPSPNCATYNAFITG---YCRVNELDKALHLFSTMANNGIRP 221 (542)
Q Consensus 149 -~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p 221 (542)
.. ....++..+..++.+. +++++|++.|++..+..|. +...+..+..+ +...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 11 1345666666666654 5789999999999987663 55666655554 445688899999999988763 33
Q ss_pred ChHHHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009143 222 NRVTHNILVHALCKK----GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV 297 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 297 (542)
+..++..+...+... |+.++|.+.+++.....+ .+..++..+...|...|++++|...+++..+.. +.+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP----GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 566777777776654 578899999999999887 788999999999999999999999999999875 55677
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (542)
++..+...|...+... .... . ..........+..+.|...++...+.. +.+..++..+...|.
T Consensus 283 ~~~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 7877776664321111 1110 0 001111112234678888888887754 345678888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccccc
Q 009143 378 IHGDIVKAREFLLSMLEKSVVPEPH--IWNVIID-GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNL 454 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 454 (542)
..|++++|.+.|++.++..+.+... .+..+.. .+.+.|++++|+..|++..+. .|+......
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~------------- 410 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK------------- 410 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH-------------
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH-------------
Confidence 9999999999999999876543221 2333332 345789999999999999884 555433222
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCC-CCChhH
Q 009143 455 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL-AIDHIP 513 (542)
Q Consensus 455 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~ 513 (542)
..+.+.+++++..+.. +.+..+|..+..+|...|++++|.+.|++..+.|. .|+...
T Consensus 411 -~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 411 -MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp -HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred -HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 2344556666666542 44678999999999999999999999999998643 344443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=3.6e-18 Score=164.88 Aligned_cols=236 Identities=13% Similarity=0.074 Sum_probs=174.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
+...|..+...+.+.|++++|+..|+++++.. +.+..++..+...|.+.|++++|.+.|+++.+..+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44568888999999999999999999998864 34678899999999999999999999999988765 46788999999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCC-----------hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHH
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPN-----------RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
+|...|++++|...++++.+.. |+ ...+..+...+...|++++|.+.+++++...+.. .+..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM--IDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS--CCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc--cCHHHHH
Confidence 9999999999999999987742 22 1222334667777788888888888887766511 2677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009143 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG 345 (542)
Q Consensus 266 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 345 (542)
.+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..+|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 77788888888888888887777664 4567777777777777777777777777777653 334666777777777777
Q ss_pred CHHHHHHHHHHHHHC
Q 009143 346 KLDEASHFYGVLSKT 360 (542)
Q Consensus 346 ~~~~A~~~~~~~~~~ 360 (542)
++++|...|+++.+.
T Consensus 296 ~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 296 AYREAVSNFLTALSL 310 (365)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777766553
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=5.8e-18 Score=163.43 Aligned_cols=266 Identities=14% Similarity=-0.002 Sum_probs=199.6
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHH
Q 009143 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231 (542)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 231 (542)
+...+..+...+.+.|++++|.+.|+++.+..| .+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 455688888889999999999999999988765 478888999999999999999999999988763 345788888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCCcHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHH
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVI----------TSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAY 299 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 299 (542)
.+...|++++|.+.++++++..+ .+.. .+..+...+.+.|++++|...++++.+.. +. +..++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 216 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP----KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQ 216 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH----HHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc----cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHH
Confidence 99999999999999999887654 2222 23345778888888888888888888764 23 67788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 009143 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (542)
Q Consensus 300 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (542)
..+...+...|++++|++.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+...|.+.
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 888888888888888888888887763 4457778888888888888888888888887753 33467778888888888
Q ss_pred CCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009143 380 GDIVKAREFLLSMLEKSVV-----------PEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (542)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (542)
|++++|...++++++..+. .+...|..+..++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888888887764311 1256677888888888888777766554
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=9.9e-18 Score=158.90 Aligned_cols=280 Identities=11% Similarity=-0.022 Sum_probs=177.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|.+.++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44456777777788888888888888877753 23566777777778888888888888887777654 35667777777
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHH-HH-HHHhc
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL-MD-SYFKN 274 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~ 274 (542)
.+...|++++|.+.++++.+.. +.+...+..+.... ++......+ .. .+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD-------------------------VDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------------------------------------------CCTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH-------------------------HHHHHHHHHHHhHHHHHc
Confidence 7777777777777777777642 11222222220000 000011111 11 25556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009143 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (542)
|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+
T Consensus 152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66667777776666554 3456666667777777777777777777766653 334566666777777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHH
Q 009143 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP-----------EPHIWNVIIDGYGRCGDLSNAFSI 423 (542)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~ 423 (542)
+++.+.. +.+..++..+...+...|++++|.+.++++.+..+.. +...|..+..++.+.|++++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7766643 2345666777777777777777777777776543321 356777788888888888888777
Q ss_pred HHHH
Q 009143 424 RDLM 427 (542)
Q Consensus 424 ~~~m 427 (542)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 6644
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=8.6e-16 Score=155.96 Aligned_cols=384 Identities=10% Similarity=-0.004 Sum_probs=276.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCC
Q 009143 141 RRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIR 220 (542)
Q Consensus 141 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (542)
+++.++.. +-+...|..++. +.+.|++++|..+|+++.+..| .+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444442 337788999998 4789999999999999998766 47889999999999999999999999999875 4
Q ss_pred CChHHHHHHHHHH-HhcCChhHHHH----HHHHHHhCCCCCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 009143 221 PNRVTHNILVHAL-CKKGLLGDAVK----FLGEVLADDDGKATSDVITSTILMDSYFK---------NGDKFQALALWND 286 (542)
Q Consensus 221 p~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~ 286 (542)
|+...|...+... ...|+.+.|.+ +|+..+..-. ..+.+...|...+....+ .|+++.|..+|++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG-MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 6877777777533 45688877765 7777665321 111567788888877665 7899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHH-------------HhCCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHH
Q 009143 287 MFQKNIQTDIVAYNVLINGF-------------CLNGDISSAFAYFCQML------KRG---FLPD--------VITYNT 336 (542)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~-------------~~~~~~~~A~~~~~~~~------~~~---~~p~--------~~~~~~ 336 (542)
.++.........|....... ...+++..|..++.+.. +.. ++|+ ...|..
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 99731111123443322211 12356777777776632 211 2343 234444
Q ss_pred HHHHHHhc----CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh
Q 009143 337 LLNCLCKQ----GKL----DEASHFYGVLSKTGVAPDQISYKTIIQGLCI-------HGDIV-------KAREFLLSMLE 394 (542)
Q Consensus 337 li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~ 394 (542)
.+...... ++. +.+..+|++..... +.+...|..+...+.+ .|+++ +|..++++.++
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 44332221 232 37778898888753 4467788888888775 68876 99999999997
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCC
Q 009143 395 KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV--FTFNALILAETRGASCNLGHIHLALQLYDEMLRRGI 472 (542)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~ 472 (542)
.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|...... +.+.|++++|.++|++..+..
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKF-----ARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTCT-
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHH-----HHHhcCHHHHHHHHHHHHhcc-
Confidence 322337889999999999999999999999999984 5542 456666654 456799999999999999852
Q ss_pred CCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 473 TPDIITYTELIKG-HCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 473 ~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
+.+...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++++.
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 2233444333322 336899999999999998863 246889999999999999999999999999874
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.1e-17 Score=158.64 Aligned_cols=268 Identities=11% Similarity=-0.041 Sum_probs=159.2
Q ss_pred HHHHhhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhH
Q 009143 92 LILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEK 171 (542)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 171 (542)
.+..+.++.+...++.... ..+.+...|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 31 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 3334566666666665431 123467789999999999999999999999999874 3467889999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHH--HHHhcCChhHHHHHHHHH
Q 009143 172 ADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH--ALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 172 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~ 249 (542)
|.+.++++.+..+. +...+..++... |+......+.. .+...|++++|.+.++++
T Consensus 108 A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 99999999987653 333333331100 11111111211 134445555555555555
Q ss_pred HhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 009143 250 LADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLP 329 (542)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p 329 (542)
++..+ .+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.
T Consensus 165 ~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 238 (327)
T 3cv0_A 165 LEMNP----NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PG 238 (327)
T ss_dssp HHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 55444 445555555555555556666655555555443 3345555556666666666666666666655542 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP-----------DQISYKTIIQGLCIHGDIVKAREFLLS 391 (542)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 391 (542)
+..++..+...+...|++++|...++.+.+..... +..++..+...+.+.|++++|..++++
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44555556666666666666666666555432111 245566666666666666666666554
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=7.1e-17 Score=149.81 Aligned_cols=194 Identities=11% Similarity=0.068 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
.++..+...+...|+.++|.+.+++++..+..+ .+...+..+...+...|++++|++.+++ +.+...+..++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P--~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDV--TNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCC--SCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCC--CCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 334444444444444444444444443322000 2333344444444444444444444443 23344444444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 009143 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITY---NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (542)
..+.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC
Confidence 44444444444444444444431 221100 01112222234455555555555443 2334444555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh
Q 009143 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN-AFSIRDLMLS 429 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 429 (542)
++++|...++++++..+. ++.++..++..+...|+.++ +.++++++.+
T Consensus 215 ~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555555544333 44455555555555555443 3345554444
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.7e-17 Score=155.98 Aligned_cols=222 Identities=10% Similarity=0.022 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
+.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++...+. .+++.+.+.++.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~ 103 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHH
Confidence 345666666666666666666665432 34445556666666666666666655444432 2334455556666
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCH
Q 009143 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (542)
|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..++.++.+.|++
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccH
Confidence 666666666555553 244456666666666666666666666544 1355566666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (542)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (542)
++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++++|..+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666655 1455666666666666666666333322 1122223334555566666666666666555
Q ss_pred HHCCCCCChhhHHHHHHHHHh
Q 009143 358 SKTGVAPDQISYKTIIQGLCI 378 (542)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~ 378 (542)
.... +.....|+.+.-.|++
T Consensus 234 L~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHT
T ss_pred hCCc-HHHHHHHHHHHHHHHh
Confidence 5433 2334445555444444
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.8e-16 Score=147.10 Aligned_cols=273 Identities=11% Similarity=0.089 Sum_probs=186.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCC
Q 009143 126 RDLCLGGKIGTALWLRRKMIQKGTVPD--VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (542)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (542)
+.....|++..|+..++..... .|+ ......+.++|...|+++.|...++. . ..|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 3455678888888877765543 233 23455667788888888888765543 1 23566777778888888888
Q ss_pred hhhHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 009143 204 LDKALHLFSTMANNGIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 282 (542)
.++|++.++++...+..| +...+..+...+...|++++|++.+++ + .+..++..++..+.+.|++++|.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~----~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G----DSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C----CSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C----CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888887765434 455566677788888888888888776 2 667788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 283 LWNDMFQKNIQTDIVAY---NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 283 ~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
.++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888887764 332211 12334444557888888888888876 355777788888888888888888888888777
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009143 360 TGVAPDQISYKTIIQGLCIHGDIVK-AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (542)
Q Consensus 360 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (542)
.. +.+..++..++..+...|+.++ +.++++++++..+. ++. +.+...+.+.++++..
T Consensus 229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChH----HHHHHHHHHHHHHHHH
Confidence 53 3466677778878888887765 56788887776543 332 2233444444444443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.7e-17 Score=157.34 Aligned_cols=348 Identities=10% Similarity=0.062 Sum_probs=151.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHH
Q 009143 130 LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (542)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (542)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567788888888877 34458888888888888888888888653 466688888888888888888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ . |+..+|+.+++.|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------G--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------C--C----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77766653 4457778888888888888888877763 1 55568888888888888888888888866
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 009143 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISY 369 (542)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 369 (542)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 35888888888888888888888877 26788888888888888888885544432 2233445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC------CHHHHHHH
Q 009143 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS-FGVSS------NVFTFNAL 442 (542)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~~~~~l 442 (542)
..++..|.+.|++++|..+++..+... +-....|+.+..+|++- ++++..+-++.-.. -+++| +...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 567788888888888888888888765 33677777777777664 33333333332222 12222 12334444
Q ss_pred HHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHH
Q 009143 443 ILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR 522 (542)
Q Consensus 443 l~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 522 (542)
... |.+.++++.|.. .|.++ +|+..--..+.+...+..+.+--.+...=..+. .+...+.|+.++.
T Consensus 289 ~~l-----y~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~ 354 (449)
T 1b89_A 289 VFL-----YDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLS 354 (449)
T ss_dssp HHH-----HHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHG
T ss_pred HHH-----HHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 443 556677776655 34443 334444444555555666655444443333332 2334667777777
Q ss_pred hcCChhHHHHHHHHH
Q 009143 523 RMKESDKARDIHQKW 537 (542)
Q Consensus 523 ~~g~~~~A~~~~~~~ 537 (542)
..=+...+..++++.
T Consensus 355 ~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 355 PRLDHTRAVNYFSKV 369 (449)
T ss_dssp GGCCHHHHHHHHHHT
T ss_pred hccCcHHHHHHHHHc
Confidence 777778888777764
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=175.52 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009143 331 VITYNTLLNCLCKQGKLDEASHFYGVLSK---TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI 407 (542)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (542)
..||+++|++||+.|++++|..+|++|.+ .|+.||..+||+||++||+.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45677777777777777777777766553 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009143 408 IDGYGRCGDL-SNAFSIRDLMLSFGVSSNVFTFNALILA 445 (542)
Q Consensus 408 i~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 445 (542)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 7777777763 5677777777777777777777776654
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=1.2e-13 Score=146.11 Aligned_cols=354 Identities=12% Similarity=0.087 Sum_probs=245.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCC
Q 009143 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (542)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (542)
+...+...|.+++|..+|++... .....+.++ -..|++++|.++.++. .+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 45566677777777777777521 122222222 2667788887777754 245778888888888888
Q ss_pred hhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 009143 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL 283 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 283 (542)
+++|++.|.+. -|...|..++..+.+.|++++|.+.+....+... +....+.++.+|++.+++++....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~-----e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-----ESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----cccccHHHHHHHHhhcCHHHHHHH
Confidence 88888888653 3677788888888888888888888887776542 222233488888888887754333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009143 284 WNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363 (542)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (542)
. + .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 2 356667777888888888888888888874 37888888888888888888888765
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 009143 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV-FTFNAL 442 (542)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 442 (542)
.+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+.. .|.. ..|+-+
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftEL 1320 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTEL 1320 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHH
Confidence 256788888888888888888877665432 36778889999999999999999999888763 3333 333333
Q ss_pred HHHhhcccccccCChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHH--------h--H-c
Q 009143 443 ILAETRGASCNLGHIHLALQLYDEMLRRGITP------DIITYTELIKGHCARGNMKEAEEVFAKI--------Q--T-L 505 (542)
Q Consensus 443 l~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~--~-~ 505 (542)
...++ -.+.+++.++.++|..-.. ++| +...|.-++-.|.+.|+++.|....-+- . + .
T Consensus 1321 aiLya---Ky~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1321 AILYS---KFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHHH---hCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 32221 3455667777777664433 233 4677999999999999999998322111 0 0 1
Q ss_pred CCCCChhHHHHHHHHHHhcC---------------ChhHHHHHHHH
Q 009143 506 GLAIDHIPFRILKKRYRRMK---------------ESDKARDIHQK 536 (542)
Q Consensus 506 g~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 536 (542)
....++..|...+.-|...+ +.+++.+++.+
T Consensus 1396 ~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred cccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 12346777777777777666 77777777663
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=172.49 Aligned_cols=120 Identities=11% Similarity=0.174 Sum_probs=105.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009143 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLE---KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNA 441 (542)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 441 (542)
-..+|+++|++||+.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009143 442 LILAETRGASCNLGHI-HLALQLYDEMLRRGITPDIITYTELIKGHCAR 489 (542)
Q Consensus 442 ll~~~~~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 489 (542)
+|.+ +|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 206 LI~g-----lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQC-----MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHH-----HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHH-----HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9987 6777874 78899999999999999999999888765554
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=8.7e-14 Score=147.03 Aligned_cols=351 Identities=13% Similarity=0.123 Sum_probs=230.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGT--VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
--...+++|...|.+.+|++++++..-.+. .-+...-+.++....+. +..+..+..++... .+ ..-+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHHHHH
Confidence 336677888899999999999998884321 12334455566666665 45666555555431 11 3346677
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCH
Q 009143 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (542)
+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCH
Confidence 778888888888888752 12222233322 667788888887765 4567788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (542)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (542)
++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 8888888553 367777888888888888888888888777653 33333445778888888877544332
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009143 358 SKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF 437 (542)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 437 (542)
+ .++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++.. +..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 2 345566667888888888888888888875 368888888888888888888887763 346
Q ss_pred HHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHH
Q 009143 438 TFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 517 (542)
Q Consensus 438 ~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 517 (542)
+|..+-.+ +...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|.-+
T Consensus 1252 aWkev~~a-----cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1252 TWKEVCFA-----CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHHH-----HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 66665555 44557777776655432 2355566677777888888888888877665432 1223344334
Q ss_pred HHHHH--hcCChhHHHHHHHH
Q 009143 518 KKRYR--RMKESDKARDIHQK 536 (542)
Q Consensus 518 ~~~~~--~~g~~~~A~~~~~~ 536 (542)
...|. +-++..++.++|.+
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 44433 23444444444443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.9e-15 Score=135.63 Aligned_cols=226 Identities=12% Similarity=0.091 Sum_probs=173.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--C----HHhH
Q 009143 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--N----CATY 191 (542)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 191 (542)
...|..+...+...|++++|+..|+++++.. .+..++..+...+...|++++|.+.+++..+..+.. + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4467788888888899999999999888876 678888888888889999999988888887654321 1 5778
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 009143 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (542)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (542)
..+...+...|++++|...+++..+. .|+. ..+.+.|++++|.+.++++....+ .+...+..+...+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP----EKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc----chHHHHHHHHHHH
Confidence 88888888888888888888888774 3443 345566778888888888887665 6677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (542)
...|++++|...+++..+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888888887765 4567777778888888888888888888877763 334667777777777777777777
Q ss_pred HHHHHHHHC
Q 009143 352 HFYGVLSKT 360 (542)
Q Consensus 352 ~~~~~~~~~ 360 (542)
..++...+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=3.2e-15 Score=132.44 Aligned_cols=199 Identities=13% Similarity=0.004 Sum_probs=112.4
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009143 221 PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN 300 (542)
Q Consensus 221 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (542)
++...+..+...+.+.|++++|...++++++..+ .+...+..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP----QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3445555555556666666666666666665554 555556666666666666666666666655544 34455555
Q ss_pred HHHHHHHhC-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 009143 301 VLINGFCLN-----------GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISY 369 (542)
Q Consensus 301 ~li~~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 369 (542)
.+...+... |++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 555555555 66666666666666652 2245556666666666666666666666666654 456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
..+...|...|++++|...+++.++..+. +...+..+...+.+.|++++|...|++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666667777777777666665443 56666666666667777777766666543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=4.2e-15 Score=147.12 Aligned_cols=383 Identities=13% Similarity=-0.013 Sum_probs=240.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh---hHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL---EKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
.+...+.+.|++++|.++|++..+.| ++..+..+...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999988875 445566677777777888 8999988888753 4556666666555
Q ss_pred HcC-----ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 009143 200 RVN-----ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG---DAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (542)
Q Consensus 200 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (542)
..+ ++++|+..|++..+.|. ...+..|...|...+..+ ++.+.+......+ +......+...|
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g------~~~a~~~Lg~~y 151 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG------YPEAGLAQVLLY 151 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT------CTTHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC------CHHHHHHHHHHH
Confidence 554 67899999999888663 236667777777665543 3455555554433 344667778888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG---DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ---- 344 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 344 (542)
...+.++++......+.+.-...++..+..|...|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 888755444444332222211233447888888888888 8899999999998887 45666556677777554
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----C
Q 009143 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQG-L--CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG-----D 416 (542)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 416 (542)
+++++|..+|+... .| +...+..+... + ...+++++|.+.|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 68899999998887 33 45566666666 3 45789999999999998875 6778888888887 55 8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 009143 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA----RGNM 492 (542)
Q Consensus 417 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~ 492 (542)
+++|...|++.. .| +......+-..|. .+.....+.++|...|++..+.|. ......|...|.. ..++
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYR-RGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHH-TTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 999999998877 33 2333333322211 112234589999999999988763 3445566666664 4589
Q ss_pred HHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 493 KEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 493 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
++|..++++..+.|.. +.......+......++.++|.++.+++.+
T Consensus 375 ~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999998887643 333332333333344566778777777654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-14 Score=132.15 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=136.7
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCc----HHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD----VITS 264 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~ 264 (542)
..|..+...+...|++++|...|+++.+.. .+..++..+...+...|++++|.+.++++++..+ ...++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR-EMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccccchHHHHHHH
Confidence 344455555555555555555555555544 4555555555555555566555555555554332 00001 4556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 344 (542)
..+...+...|++++|...|++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666666666666666666666666542 332 23444566667777776666542 22345566666667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009143 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIR 424 (542)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (542)
|++++|...++...+.. +.+..++..+...+...|++++|...++++++..+. +...|..+..++.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777766653 234566677777777777777777777777765433 5667777777777777777777777
Q ss_pred HHHHh
Q 009143 425 DLMLS 429 (542)
Q Consensus 425 ~~m~~ 429 (542)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=5.4e-15 Score=130.95 Aligned_cols=194 Identities=15% Similarity=0.078 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 009143 155 THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC 234 (542)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 234 (542)
.+..+...+.+.|++++|...|++..+..| .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 333444444444444444444444443332 133334444444444444444444444443321 112333333444444
Q ss_pred hc-----------CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 235 KK-----------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 235 ~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
.. |++++|...+++.++..+ .+..++..+...+...|++++|+..|++..+.. .++..+..+.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNP----RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 43 666666666666665554 455566666666666666666666666665554 4555566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (542)
..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666665542 224455555555666666666666555543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.2e-14 Score=133.60 Aligned_cols=232 Identities=16% Similarity=0.104 Sum_probs=105.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCC--hHHHHHHHHHHHh
Q 009143 158 YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNILVHALCK 235 (542)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~ 235 (542)
.....+...|++++|.+.|+++.+..|. +...+..+..++...|++++|++.+++..+.+..|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 233444444444444444444444444443211111 1224444444555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
.|++++|.+.++++++..+ .+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDT----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp TTCHHHHHHHHHHHHHHST----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443 344455555555555555555555555554442 33444444444222223355555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHhcCCHHHH
Q 009143 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGK---LDEASHFYGVLSKTG-VAPD------QISYKTIIQGLCIHGDIVKA 385 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A 385 (542)
.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555442 2224444444555555554 444555555444321 0111 13444455555555555556
Q ss_pred HHHHHHHHhCC
Q 009143 386 REFLLSMLEKS 396 (542)
Q Consensus 386 ~~~~~~~~~~~ 396 (542)
.+.++++++..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 55555555544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=7.3e-14 Score=126.85 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=145.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|.+.++++.+..+ .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4567777788888888888888888887753 33566777788888888888888888888777654 356777777777
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 198 YCRVNELDKALHLFSTMANNGIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++++..+ .+..++..+...+...|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR----NQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCC
Confidence 888888888888888776632233 345666677777777777777777777777655 556677777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777776654 455666677777777777777777777777665
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=5.1e-14 Score=135.02 Aligned_cols=216 Identities=12% Similarity=0.056 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-hhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD-LEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
..|+.+...+.+.|++++|+..++++++.. +-+..+|+.+...+...|+ +++|++.|+++.+..|. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 456666666666677777777777666653 2245566666666666665 67777777666665553 56666666666
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh-cCC
Q 009143 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-NGD 276 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 276 (542)
+...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.++ .+..+|+.+..++.+ .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P----~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCc
Confidence 666666666666666666543 22456666666666666666666666666666655 566666666666666 444
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009143 277 KFQA-----LALWNDMFQKNIQTDIVAYNVLINGFCLNG--DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (542)
Q Consensus 277 ~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 344 (542)
.++| +..+++.+... +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 3554 35555555443 334455555555555544 355555555554 21 122344444454444443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=8.5e-14 Score=127.98 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=196.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--HHhHHHHH
Q 009143 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--CATYNAFI 195 (542)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li 195 (542)
+..+......+...|++++|+..|++.++.. +.+...+..+...|...|++++|.+.++++.+....++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677888999999999999999999874 23566899999999999999999999999988432222 33588999
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (542)
..+...|++++|++.|++..+.. +.+..++..+...+...|++++|.+.++++++..+ .+..++..+...+...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT----TDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC----CcHHHHHHHHHHHHHHH
Confidence 99999999999999999998863 34668899999999999999999999999998866 77888888884555566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcC
Q 009143 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD---ISSAFAYFCQMLKRG-FLPD------VITYNTLLNCLCKQG 345 (542)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~g 345 (542)
++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999999999875 5567888888888888888 888999998887642 1233 257788889999999
Q ss_pred CHHHHHHHHHHHHHCC
Q 009143 346 KLDEASHFYGVLSKTG 361 (542)
Q Consensus 346 ~~~~A~~~~~~~~~~~ 361 (542)
++++|...+++..+..
T Consensus 236 ~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 236 DKVKADAAWKNILALD 251 (272)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998864
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=7.7e-14 Score=133.78 Aligned_cols=251 Identities=13% Similarity=0.047 Sum_probs=212.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCC-hhhHHHHHHHHHHCCCCCChHHHHHHHH
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE-LDKALHLFSTMANNGIRPNRVTHNILVH 231 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 231 (542)
...|..+...+.+.|++++|++.++++++..|. +...|+.+..++...|+ +++|+..|+++.+.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456788888899999999999999999998764 78899999999999997 999999999999864 336789999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CC
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL-NG 310 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~ 310 (542)
++...|++++|+..++++++.++ .+..+|..+..++.+.|++++|+..++++++.+ +.+...|+.+..++.. .|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP----~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHccCHHHHHHHHHHHHHhCc----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999887 899999999999999999999999999999987 6788999999999999 66
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---
Q 009143 311 DISSA-----FAYFCQMLKRGFLPDVITYNTLLNCLCKQG--KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG--- 380 (542)
Q Consensus 311 ~~~~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 380 (542)
..++| ++.|++..+.. +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 58899988874 335778888888888888 689999999888 43 3446778888999998864
Q ss_pred ------CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc
Q 009143 381 ------DIVKAREFLLSM-LEKSVVPEPHIWNVIIDGYGRC 414 (542)
Q Consensus 381 ------~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~ 414 (542)
..++|+++++++ .+.++. ....|..+...+...
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQSK 366 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence 358999999999 676543 556777777766543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=8.7e-14 Score=123.73 Aligned_cols=202 Identities=13% Similarity=0.056 Sum_probs=129.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
++..|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++.+..+ .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44566777777777777777777777777653 23456667777777777777777777777766544 35566666677
Q ss_pred HHHHc-CChhhHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc
Q 009143 197 GYCRV-NELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (542)
Q Consensus 197 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (542)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++++..+ .+...+..+...+.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP----QFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHc
Confidence 77777 777777777777665222222 45566666666666777777777666666554 4556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 275 GDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
|++++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666666543 2 45555555666666666666666666666543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.8e-13 Score=124.31 Aligned_cols=198 Identities=12% Similarity=-0.003 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
.+..+...+...|++++|.+.++++++..+ .+..++..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDP----SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 334444444444555555555544444433 344445555555555555555555555544433 234445555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 009143 305 GFCLNGDISSAFAYFCQMLKRGFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIV 383 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 383 (542)
.+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555554421122 23444455555555555555555555555432 223445555555566666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 384 KAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
+|...++++.+..+. +...+..+...+...|++++|.+.++++.+
T Consensus 193 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665554332 455555556666666666666666666655
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.2e-12 Score=120.53 Aligned_cols=225 Identities=15% Similarity=0.027 Sum_probs=149.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITY 334 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~ 334 (542)
.+..++..+...+...|++++|...|++..+. .+..++..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45667777777777778888888888777763 355667777777777 777778887777777764 56667
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009143 335 NTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNV 406 (542)
Q Consensus 335 ~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (542)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777777777 777777777777777654 55666677777776 777777777777777654 4556666
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccc----cCChHHHHHHHHHHHhCCCCCCHHH
Q 009143 407 IIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCN----LGHIHLALQLYDEMLRRGITPDIIT 478 (542)
Q Consensus 407 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~ 478 (542)
+...|.. .+++++|...|++..+.+ +...+..+-.. +.. .+++++|...+++..+.+ +...
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-----~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNM-----YHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-----HHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH-----HHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 6666666 677777777777766643 22333333322 333 566667776666666643 2455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhHcC
Q 009143 479 YTELIKGHCA----RGNMKEAEEVFAKIQTLG 506 (542)
Q Consensus 479 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g 506 (542)
+..+...|.. .+++++|.+.+++..+.|
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5566666666 666666666666666654
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=1.4e-11 Score=125.98 Aligned_cols=412 Identities=10% Similarity=0.047 Sum_probs=289.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC---hhHHHHHHHHHhhCCC-CCCHHhH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD---LEKADHVIREMSEMRP-SPNCATY 191 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~ 191 (542)
.|..+|..++..+.+.+.++.+..+|++++.. .+.....|..-+..-.+.|. ++.+.++|++.+...+ .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 68889999999999999999999999999987 45567788888888888888 9999999999988652 3788899
Q ss_pred HHHHHHHHHcCCh--------hhHHHHHHHHHH-CCC-CCC-hHHHHHHHHHHH---------hcCChhHHHHHHHHHHh
Q 009143 192 NAFITGYCRVNEL--------DKALHLFSTMAN-NGI-RPN-RVTHNILVHALC---------KKGLLGDAVKFLGEVLA 251 (542)
Q Consensus 192 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~ 251 (542)
...+....+.++. +.+.++|+.... .|. .++ ...|...+.... ..++++.+.++|+.++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9888876665554 334477777654 465 554 456766665443 23457789999999986
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--CC----C-----------C-----C-
Q 009143 252 DDDGKATSDVITSTILMDSYFK-------------NGDKFQALALWNDMFQK--NI----Q-----------T-----D- 295 (542)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~--~~----~-----------~-----~- 295 (542)
... . ....+|......--. ..+++.|...+.++... ++ + | +
T Consensus 223 iP~-~--~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 223 QPM-D--CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp SCC-S--SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred Ccc-H--HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 432 1 222333322221111 11234445555443221 11 1 1 0
Q ss_pred --HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCC
Q 009143 296 --IVAYNVLINGFCLNG-------DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS-HFYGVLSKTGVAPD 365 (542)
Q Consensus 296 --~~~~~~li~~~~~~~-------~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~ 365 (542)
...|...+..--..+ ..+.+..+|+++... ++-....|...+..+...|+.++|. .+++..... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 134555554433322 134466788888876 3557788888888888899999996 999999875 4556
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCChHHHHHHH
Q 009143 366 QISYKTIIQGLCIHGDIVKAREFLLSMLEKSV---------VPE------------PHIWNVIIDGYGRCGDLSNAFSIR 424 (542)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~ 424 (542)
...+...+...-+.|++++|.++|+++++... .|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66777788888899999999999999986410 132 346888888888899999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 425 DLMLSF-G-VSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 502 (542)
Q Consensus 425 ~~m~~~-~-~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (542)
.++.+. + ..+......+.+.- ...++.+.|.++|+..++. .+-+...|...++.....|+.+.|..+|++.
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~------~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEY------HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999885 2 22333444444432 2235699999999999985 2335667778888888899999999999999
Q ss_pred hHcCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 503 QTLGLAI--DHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 503 ~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
......+ ....|..+++--.+.|+.+.+.++.+++++.
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8864321 3467888888889999999999999999764
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=4.7e-14 Score=129.86 Aligned_cols=220 Identities=12% Similarity=-0.068 Sum_probs=111.9
Q ss_pred CChhhHHHHHHHHHHCCC---CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH
Q 009143 202 NELDKALHLFSTMANNGI---RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (542)
Q Consensus 202 g~~~~A~~~~~~m~~~g~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (542)
|++++|+..++++.+... +.+..++..+...+...|++++|.+.++++++..+ .+..++..+...+...|+++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHccCHH
Confidence 444555555555544321 01233444455555555555555555555555443 44555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
+|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5555555555443 334455555555555555555555555555554 2333233333333344556666666665554
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP---EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
... +++...+ .++..+...++.++|...+.+..+..... +...+..+...|.+.|++++|...|+++.+.
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 432 2222222 24444555555566666666555432110 1355666666666666666666666666653
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=9.2e-14 Score=137.45 Aligned_cols=352 Identities=13% Similarity=0.042 Sum_probs=235.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCCh---hhHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 009143 158 YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL---DKALHLFSTMANNGIRPNRVTHNILVHALC 234 (542)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 234 (542)
.+...+.+.|++++|.+.|++..+.+ +...+..|...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998865 334455667777778888 9999999998754 5556667777566
Q ss_pred hcC-----ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 235 KKG-----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF---QALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 235 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
..+ +.++|.+.+++..+.+. ++ .+..|...|...+..+ ++.+.+......| ++..+..|...|
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~----~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y 151 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE----GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLY 151 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC----SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC----HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 555 78899999999999765 44 7777888888766543 4555555555544 455677788888
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----
Q 009143 307 CLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG---KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH---- 379 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 379 (542)
...+.++++......+.+.-...++..+..+...|...| +.++|...|....+.| +++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 888865555444333333222234448888999999999 9999999999999987 34555556677777554
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCC
Q 009143 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDG-Y--GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGH 456 (542)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~ 456 (542)
+++++|.+.|++.. . -++..+..+... + ...+++++|...|++..+.| +...+..+-..|. .+.....+
T Consensus 231 ~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999988 3 367778888877 4 56899999999999999876 3333333333321 11122349
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHh----cCChh
Q 009143 457 IHLALQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRR----MKESD 528 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~ 528 (542)
+++|.+.|++.. . -+...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+.+
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999888 3 356777778877776 4499999999999988753 4455677777764 46899
Q ss_pred HHHHHHHHHhhcC
Q 009143 529 KARDIHQKWLLRN 541 (542)
Q Consensus 529 ~A~~~~~~~l~~~ 541 (542)
+|..+|+++.+.+
T Consensus 376 ~A~~~~~~A~~~g 388 (452)
T 3e4b_A 376 NAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC
Confidence 9999999986543
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.6e-14 Score=133.05 Aligned_cols=222 Identities=14% Similarity=0.015 Sum_probs=119.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChh
Q 009143 129 CLGGKIGTALWLRRKMIQKGTV---PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (542)
Q Consensus 129 ~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (542)
...|++++|+..++++++.... .+..++..+...+...|++++|.+.|+++.+..+ .+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 3456777777777777665211 1345566666667777777777777777666554 25566666666666667777
Q ss_pred hHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (542)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 285 (542)
+|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++++..+ .+. .....+..+...|++++|...++
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----NDP-FRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCH-HHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CCh-HHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777666666542 22455666666666666666666666666666543 222 22222233344456666666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 286 DMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLP---DVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
+..... +++...+. ++..+...++.++|++.+.+..+..... +...+..+...+.+.|++++|...++...+
T Consensus 169 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 554432 22322222 4444455555555555555544321000 023344444444444444444444444444
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=2.6e-13 Score=120.59 Aligned_cols=200 Identities=13% Similarity=0.077 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
..+..+...+...|++++|.+.++++++..+ .+..++..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP----KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3344444444444555555555444444433 334444445555555555555555555544432 23444455555
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 009143 304 NGFCLN-GDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (542)
Q Consensus 304 ~~~~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (542)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 555555 555555555555544211222 3444445555555555555555555554432 2234445555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
+++|...++++.+..+..+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555443312444455555555555555555555555543
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=4.1e-14 Score=127.61 Aligned_cols=202 Identities=14% Similarity=0.076 Sum_probs=136.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
.....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+..+ .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 345567777778888888888888888888753 33567777888888888888888888888877654 3667777788
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (542)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++++..+ .+...+..+...+.+.|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----NDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHcC
Confidence 88888888888888888877653 33566777777788888888888888888877665 56677777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888887777654 445667777777777777777777777777765
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2e-12 Score=118.97 Aligned_cols=224 Identities=15% Similarity=0.023 Sum_probs=153.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCCHHhHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK----IGDLEKADHVIREMSEMRPSPNCATYN 192 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (542)
++.++..+...+...|++++|+..|++..+. .+..++..+...|.. .|++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556677777777777888888777777763 245666777777777 777777777777777654 566677
Q ss_pred HHHHHHHH----cCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCCCcHHHH
Q 009143 193 AFITGYCR----VNELDKALHLFSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDVITS 264 (542)
Q Consensus 193 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (542)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~ 149 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------DGDGC 149 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------cHHHH
Confidence 77777777 777777777777777654 56667777777777 777777777777777643 34456
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009143 265 TILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITYNT 336 (542)
Q Consensus 265 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 336 (542)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 666666666 677777777777776653 45566666666766 677777777777766653 2455556
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009143 337 LLNCLCK----QGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 337 li~~~~~----~g~~~~A~~~~~~~~~~~ 361 (542)
+...|.. .+++++|...++...+.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666666 666777777766666544
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=7.5e-14 Score=125.89 Aligned_cols=196 Identities=15% Similarity=0.098 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 009143 155 THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC 234 (542)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 234 (542)
.|..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 334444444444444444444444444332 234444444444444444444444444444331 123334444444444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS 314 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 314 (542)
..|++++|.+.++++.+..+ .+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM----ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC----CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 44444444444444444333 333344444444444444444444444443332 2233334444444444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 315 AFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 315 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
|...++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444444433331 1223333333334444444444444444333
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=8e-14 Score=136.58 Aligned_cols=275 Identities=16% Similarity=0.107 Sum_probs=149.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhCC-----CCCCHHh
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEMR-----PSPNCAT 190 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 190 (542)
.+..+...+...|++++|+..|+++++.... +. ..+..+...|...|++++|.+.+++..+.. ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555566666666666666666654211 22 345555556666666666666665554320 0112334
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Q 009143 191 YNAFITGYCRVNELDKALHLFSTMANNGIR-PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (542)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (542)
+..+...|...|++++|...+++..+.... .+ .+ ....++..+..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------~~----~~~~~~~~l~~ 174 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGD------------------------------RL----SEGRALYNLGN 174 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------------------------HH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc------------------------------hH----HHHHHHHHHHH
Confidence 444555555555555555555544332000 00 00 22334555555
Q ss_pred HHHhcCC-----------------HHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009143 270 SYFKNGD-----------------KFQALALWNDMFQK----N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF 327 (542)
Q Consensus 270 ~~~~~g~-----------------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 327 (542)
.|...|+ +++|.+.+++..+. + .+....++..+...+...|++++|+..+++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5555555 55555555544321 1 011234566666677777777777777776654310
Q ss_pred C-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009143 328 L-PD----VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-----PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV 397 (542)
Q Consensus 328 ~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 397 (542)
. ++ ..++..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++.++...
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0 11 225666677777777777777777666543110 1134566667777777777777777777654311
Q ss_pred -----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 398 -----VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 398 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.....++..+...|.+.|++++|...|++..+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11134666777778888888888888877766
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=7.9e-14 Score=136.21 Aligned_cols=278 Identities=17% Similarity=0.084 Sum_probs=182.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHhhC----CCC-C
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD----VLTHNYLVNELCKIGDLEKADHVIREMSEM----RPS-P 186 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~ 186 (542)
.....+......+...|++++|+..|+++++.... + ..++..+...+...|++++|...+++..+. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45556777788888999999999999998886322 2 356778888888999999999988876542 111 1
Q ss_pred CHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCC--------------------hhH
Q 009143 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGI-RPN----RVTHNILVHALCKKGL--------------------LGD 241 (542)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~--------------------~~~ 241 (542)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677788888888999999988887755310 011 3467777788888888 888
Q ss_pred HHHHHHHHHhCCCC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCCHHH
Q 009143 242 AVKFLGEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTD----IVAYNVLINGFCLNGDISS 314 (542)
Q Consensus 242 a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~ 314 (542)
|.+.+.+.+..... ..+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88877776543110 0012345677777788888888888887777664310 011 2366777777777778777
Q ss_pred HHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHH
Q 009143 315 AFAYFCQMLKRGF-LPD----VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-PD----QISYKTIIQGLCIHGDIVK 384 (542)
Q Consensus 315 A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~ 384 (542)
|...+++..+... .++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 7777777654310 011 345666667777777777777777665542100 11 3355566666666777777
Q ss_pred HHHHHHHHHh
Q 009143 385 AREFLLSMLE 394 (542)
Q Consensus 385 A~~~~~~~~~ 394 (542)
|.+.+++..+
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=9.4e-14 Score=136.10 Aligned_cols=280 Identities=16% Similarity=0.108 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCC
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV----ITSTILMDSYFKNGDKFQALALWNDMFQK----N-IQT 294 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~ 294 (542)
..+..+...+...|++++|...++++++..+ .+. .++..+...+...|++++|...+++..+. + .+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 3444556666777777777777777777654 232 45666677777777777777777666542 1 122
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHH
Q 009143 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRG----F-LPDVITYNTLLNCLCKQGK----------LDEASHFYGVLSK 359 (542)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~-~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~ 359 (542)
...++..+...+...|++++|...++++.+.. - .....++..+...|...|+ .++|...
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------ 198 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------ 198 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH------
Confidence 33455566666666666666666666654421 0 1112344444445555555 0000000
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C
Q 009143 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK----S-VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-S 433 (542)
Q Consensus 360 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~ 433 (542)
+++|.+.+++..+. + .......+..+...|...|++++|...+++..+... .
T Consensus 199 ----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 199 ----------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 44444444433221 0 011223556666666667777777766666654210 0
Q ss_pred CC----HHHHHHHHHHhhcccccccCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 434 SN----VFTFNALILAETRGASCNLGHIHLALQLYDEMLRR----GIT-PDIITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 434 p~----~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
++ ...+..+... +...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+
T Consensus 257 ~~~~~~~~~~~~la~~-----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 257 GDRAAERRANSNLGNS-----HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp TCHHHHHHHHHHHHHH-----HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-----HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1123333332 55667777777777776652 100 1145677888889999999999999988775
Q ss_pred cC----C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 505 LG----L-AIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 505 ~g----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
.. . .....++..+...|...|++++|.++++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 31 1 112346778888899999999999999988764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.3e-13 Score=134.65 Aligned_cols=279 Identities=18% Similarity=0.152 Sum_probs=173.6
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCC-C
Q 009143 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN---CATYNAFITGYCRVNELDKALHLFSTMANN----GIRP-N 222 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 222 (542)
+....+......+...|++++|...|+++.+..+... ..++..+...+...|++++|...+++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4555667778888899999999999999888654311 357788888899999999999998876543 2122 2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHHhcCC--------------------HHHH
Q 009143 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK--ATSDVITSTILMDSYFKNGD--------------------KFQA 280 (542)
Q Consensus 223 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--------------------~~~a 280 (542)
..++..+...+...|++++|...+++++...+.. ......++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 4567778888888899999988888877643201 00124477778888888888 7777
Q ss_pred HHHHHHHHHC----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 009143 281 LALWNDMFQK----N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF-LPD----VITYNTLLNCLCKQGKLDEA 350 (542)
Q Consensus 281 ~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A 350 (542)
.+.+++..+. + .+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777765532 1 011234566667777777777777777776654310 111 22556666666677777777
Q ss_pred HHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHH
Q 009143 351 SHFYGVLSKTGVA-PD----QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV-PE----PHIWNVIIDGYGRCGDLSNA 420 (542)
Q Consensus 351 ~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A 420 (542)
...+++..+.... ++ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7666665432100 01 334555555666666666666666655432110 01 33455555555566666666
Q ss_pred HHHHHHHHh
Q 009143 421 FSIRDLMLS 429 (542)
Q Consensus 421 ~~~~~~m~~ 429 (542)
...+++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555443
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=2.2e-13 Score=129.14 Aligned_cols=269 Identities=18% Similarity=0.169 Sum_probs=133.9
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCC-ChHHHHHHHHH
Q 009143 161 NELCKIGDLEKADHVIREMSEMRPSPN---CATYNAFITGYCRVNELDKALHLFSTMANN----GIRP-NRVTHNILVHA 232 (542)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~ 232 (542)
..+...|++++|...|+++.+..+... ...+..+...+...|++++|.+.+++.... +..| ...++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 334444444444444444444322100 133444444444444444444444443221 1011 12334444555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHC
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGK--ATSDVITSTILMDSYFKNGD--------------------KFQALALWNDMFQK 290 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~ 290 (542)
+...|++++|.+.+.+.++..+.. ......++..+...+...|+ +++|.+.+++....
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444321100 00112355555566666666 56666555554321
Q ss_pred ----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 291 ----N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF-LP----DVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 291 ----~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
+ .+....++..+...+...|++++|.+.+++..+... .+ ...++..+...+...|++++|...+++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 011234566666667777777777777766654310 01 1235666666777777777777777665542
Q ss_pred CCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 361 GVA-PD----QISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-----VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 361 ~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
... .+ ..++..+...+...|++++|...+++..+... .....++..+...|.+.|++++|...+++..+
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 100 11 34555666666677777777777766654211 01133556666677777777777777776665
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.2e-13 Score=129.10 Aligned_cols=275 Identities=16% Similarity=0.099 Sum_probs=155.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCH
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD----VITSTILMDSYFKNGDKFQALALWNDMFQK----N-IQTDI 296 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 296 (542)
+......+...|++++|...++++++..+ .+ ...+..+...+...|++++|.+.+++..+. + .+...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34445555566666666666666665543 22 244555555556666666666655554332 1 01113
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 009143 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGF-LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQG 375 (542)
Q Consensus 297 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 375 (542)
.++..+...+...|++++|...+++..+... .++.. ....++..+...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~ 132 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNV 132 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHH
Confidence 3444455555555555555555555433210 00100 001234444444
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009143 376 LCIHGD--------------------IVKAREFLLSMLEK----S-VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (542)
Q Consensus 376 ~~~~g~--------------------~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (542)
+...|+ +++|.+.+++.... + .......+..+...+...|++++|...+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444444 55555555444321 1 0112345666777777777777777777776542
Q ss_pred CC-CCC----HHHHHHHHHHhhcccccccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009143 431 GV-SSN----VFTFNALILAETRGASCNLGHIHLALQLYDEMLRR----GITP-DIITYTELIKGHCARGNMKEAEEVFA 500 (542)
Q Consensus 431 ~~-~p~----~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 500 (542)
.. .++ ...+..+... +...|++++|...+++..+. +..+ ...++..+...|...|++++|...++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNA-----YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 10 111 1133333333 56678888888888877652 1111 14577888999999999999999999
Q ss_pred HHhHc----CC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 501 KIQTL----GL-AIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 501 ~m~~~----g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
+..+. +- .....++..+...|...|++++|.++++++++.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88763 11 111447778899999999999999999999764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=2.5e-12 Score=110.51 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHH
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 232 (542)
+.+|..+...|.+.|++++|++.|++..+..|. +..++..+..+|.+.|++++|...++...... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344445555555555555555555555444432 44445555555555555555555555544432 1233444444444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 312 (542)
+...++++.+.+.+.+.....+ .+..++..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 5555555555555555554443 444455555555555555555555555555443 33444555555555555555
Q ss_pred HHHHHHHHHHHH
Q 009143 313 SSAFAYFCQMLK 324 (542)
Q Consensus 313 ~~A~~~~~~~~~ 324 (542)
++|++.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=2.3e-11 Score=113.91 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHH-------cCCh-------hHHHHHHHHHhh-CCCCCCHHhHHHHHHHHH
Q 009143 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCK-------IGDL-------EKADHVIREMSE-MRPSPNCATYNAFITGYC 199 (542)
Q Consensus 135 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 199 (542)
++|+.+|++.+... +.++..|..++..+.. .|++ ++|..+|++..+ ..| .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 67888888888752 3467778777777653 4776 888888888887 344 36678888888888
Q ss_pred HcCChhhHHHHHHHHHHCCCCCC-hH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH-hcCC
Q 009143 200 RVNELDKALHLFSTMANNGIRPN-RV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF-KNGD 276 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 276 (542)
+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|.++|+++++..+ .+...|...+.... ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----CCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCC
Confidence 888888998888888874 443 33 788888888888888888888888888765 44555554444432 2588
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG-FLP--DVITYNTLLNCLCKQGKLDEASHF 353 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~ 353 (542)
.++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888887654 4467778888888888888888888888888753 344 355677777777778888888888
Q ss_pred HHHHHHC
Q 009143 354 YGVLSKT 360 (542)
Q Consensus 354 ~~~~~~~ 360 (542)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877764
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.7e-12 Score=125.93 Aligned_cols=300 Identities=11% Similarity=-0.014 Sum_probs=186.5
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCCC--hhhHHHHHHH--HHHcCChhHHH-----------HHHHHHhhCCCCCCH--
Q 009143 128 LCLGGKIGTALWLRRKMIQK--GTVPD--VLTHNYLVNE--LCKIGDLEKAD-----------HVIREMSEMRPSPNC-- 188 (542)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~-- 188 (542)
+.+.+++++|..+++++.+. ....| ...|..++.. ..-.+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35689999999999888664 22223 3333333322 22234444444 666665432111010
Q ss_pred --HhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CC
Q 009143 189 --ATYNAFITGYCRVNELDKALHLFSTMANN----GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK---AT 258 (542)
Q Consensus 189 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~ 258 (542)
..+......+...|++++|...+++..+. +-.+ ...++..+...+...|++++|.+.+.+.++..... .+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 11222556677889999999999888664 1111 23567788888888999999988888887643211 01
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-C
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK----N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GF-L 328 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~ 328 (542)
....+++.+...|...|++++|...+++..+. + .+....++..+...|...|++++|++.+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 23457788888888888888888888877643 1 0111246777888888888888888888887762 22 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH
Q 009143 329 PDVITYNTLLNCLCKQGKLDEASHFYGVLSKT----GVAPDQISYKTIIQGLCIHGD---IVKAREFLLSMLEKSVVPEP 401 (542)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 401 (542)
....++..+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++... .....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHH
Confidence 23556777788888888888888888776543 111112234556666666777 6666666665411 11123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
..+..+...|...|++++|...|++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566677777777888888777777654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.4e-12 Score=126.46 Aligned_cols=232 Identities=8% Similarity=-0.103 Sum_probs=125.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----ChhhHH
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKR----GFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV-AP-----DQISYK 370 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~-----~~~~~~ 370 (542)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+.+..+... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455566666666666665542 1011 124455555666666666666666655543210 01 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHH
Q 009143 371 TIIQGLCIHGDIVKAREFLLSMLEKSVV-PE----PHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GVSSNV-FTFN 440 (542)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~ 440 (542)
.+...|...|++++|.+.+++.++.... ++ ..++..+...|...|++++|...+++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666665532110 11 135666666667777777777766666551 221322 3333
Q ss_pred HHHHHhhcccccccCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhHcCCCCChhH
Q 009143 441 ALILAETRGASCNLGHIHLALQLYDEMLRR----GITPDIITYTELIKGHCARGN---MKEAEEVFAKIQTLGLAIDHIP 513 (542)
Q Consensus 441 ~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~ 513 (542)
.+-.. +...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++... .+.....
T Consensus 269 ~l~~~-----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~ 341 (383)
T 3ulq_A 269 LITQI-----HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDF 341 (383)
T ss_dssp HHHHH-----HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHH-----HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHH
Confidence 33333 55667777777777666542 111112334566677777777 5666666555421 1122345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 514 FRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
+..+...|...|++++|.++++++++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667777788888888888888877653
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=6.8e-12 Score=107.70 Aligned_cols=173 Identities=12% Similarity=-0.039 Sum_probs=125.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
.+..+|..+...|.+.|++++|++.|++..+.. |-+..++..+...+.+.|++++|+..+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 456677777777777777777777777777665 5567777777777777777777777777776653 33456666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 009143 339 NCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (542)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (542)
..+...++++.|...+....+.. +.+...+..+...|.+.|++++|++.+++.++..+. +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 77777778888887777776653 335667777777788888888888888888776654 6777888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 009143 419 NAFSIRDLMLSFGVSSNVF 437 (542)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~~ 437 (542)
+|.+.|++.++. .|+..
T Consensus 159 ~A~~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHHHHHT--THHHH
T ss_pred HHHHHHHHHHhC--CccCH
Confidence 888888887763 45543
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=2.2e-11 Score=114.05 Aligned_cols=217 Identities=10% Similarity=0.017 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH-------cCCh-------hhHHHHHHHHHHCCCCC-ChHHHHHHHHHHH
Q 009143 170 EKADHVIREMSEMRPSPNCATYNAFITGYCR-------VNEL-------DKALHLFSTMANNGIRP-NRVTHNILVHALC 234 (542)
Q Consensus 170 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 234 (542)
++|..+|++..+..| .+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 466666666666544 355666666665543 3553 5555555555542 122 3345555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCCCH
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVI-TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC-LNGDI 312 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~ 312 (542)
+.|++++|.++|+++++..+ .+.. +|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED----IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS----SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCH
Confidence 55555555555555555443 2222 45555555555555555555555555443 222223322221111 13444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 009143 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG-VAP--DQISYKTIIQGLCIHGDIVKAREFL 389 (542)
Q Consensus 313 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 389 (542)
++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555444444431 1233444444444444444444444444444431 122 1233444444444444444444444
Q ss_pred HHHHh
Q 009143 390 LSMLE 394 (542)
Q Consensus 390 ~~~~~ 394 (542)
+++.+
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.2e-12 Score=130.30 Aligned_cols=214 Identities=14% Similarity=0.046 Sum_probs=172.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh-hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHH
Q 009143 132 GKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL-EKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHL 210 (542)
Q Consensus 132 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (542)
+.+++++..++...... +.+...+..+...+...|++ ++|++.|++..+..+ .+...|..+..+|.+.|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34667777777766542 34677888888889999999 999999999888765 3678888999999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc-------
Q 009143 211 FSTMANNGIRPNRVTHNILVHALCKK---------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN------- 274 (542)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 274 (542)
|++..+. .|+...+..+...+... |++++|.+.++++++..+ .+...|..+...|...
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV----LDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhhccc
Confidence 9998875 46778888888888888 889999999999988776 7788888888888888
Q ss_pred -CCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009143 275 -GDKFQALALWNDMFQKNIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (542)
Q Consensus 275 -g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (542)
|++++|.+.|++..+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 234 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888764 3 477888888888888888888888888887763 33456677777778888877777
Q ss_pred HHHHH
Q 009143 351 SHFYG 355 (542)
Q Consensus 351 ~~~~~ 355 (542)
...+.
T Consensus 312 i~~~~ 316 (474)
T 4abn_A 312 LESKG 316 (474)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 76543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.2e-12 Score=128.33 Aligned_cols=214 Identities=12% Similarity=-0.013 Sum_probs=155.4
Q ss_pred hhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 009143 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL-GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 282 (542)
+++++..++..... .+.+...+..+...+...|++ ++|++.++++++..+ .+..+|..+...|.+.|++++|.+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP----ELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666655443 223566677777777777777 777777777777665 667777778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------C
Q 009143 283 LWNDMFQKNIQTDIVAYNVLINGFCLN---------GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ--------G 345 (542)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g 345 (542)
.|++..+.. |+...+..+...+... |++++|++.|++..+.. +.+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 888777663 5567777777777777 88888888888877763 33567777777777777 7
Q ss_pred CHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009143 346 KLDEASHFYGVLSKTGVA--PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423 (542)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (542)
++++|...|++..+.... .+...+..+...|...|++++|.+.|++..+..+. +...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887775310 36777888888888888888888888888776654 667778888888888888887765
Q ss_pred HHH
Q 009143 424 RDL 426 (542)
Q Consensus 424 ~~~ 426 (542)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.1e-09 Score=112.24 Aligned_cols=398 Identities=7% Similarity=-0.018 Sum_probs=267.8
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCC---hhhHHHH
Q 009143 134 IGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE---LDKALHL 210 (542)
Q Consensus 134 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 210 (542)
..+.+..|++.+... +-|..+|..++..+.+.+.++.+..+|+++...-| .....|...+..-.+.+. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666666654 45899999999999999999999999999998765 477889999998888888 9999999
Q ss_pred HHHHHHCC-CCCChHHHHHHHHHHHhcCCh--------hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH---------
Q 009143 211 FSTMANNG-IRPNRVTHNILVHALCKKGLL--------GDAVKFLGEVLADDDGKATSDVITSTILMDSYF--------- 272 (542)
Q Consensus 211 ~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 272 (542)
|++..... .+|++..|...+....+.++. +...++|+.++..-..-.......|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998763 137888888877766665554 334577777765322101145678888776544
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHH----------hCCCHHHHHHHHHHHHHc--CC----C-----
Q 009143 273 KNGDKFQALALWNDMFQKNIQTDIVAYNV---LINGFC----------LNGDISSAFAYFCQMLKR--GF----L----- 328 (542)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~----------~~~~~~~A~~~~~~~~~~--~~----~----- 328 (542)
..++++.+.++|++++......-..+|.. +..... ...+++.|...+.++... ++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34457889999999985321112233322 221110 012334455555543321 11 1
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-
Q 009143 329 ------P-----D---VITYNTLLNCLCKQG-------KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAR- 386 (542)
Q Consensus 329 ------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 386 (542)
| + ...|...+.---..+ ..+.+..+|++.... .+-....|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 123444443222221 123456678887775 3457788888888888889999997
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHH
Q 009143 387 EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG---------VSSN------------VFTFNALILA 445 (542)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll~~ 445 (542)
+++++.....+ .+...|-..+....+.|++++|.++|+++.+.. -.|+ ...|...+..
T Consensus 365 ~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 99999987543 467778888999999999999999999988631 0132 1245555543
Q ss_pred hhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhc
Q 009143 446 ETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR-GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRM 524 (542)
Q Consensus 446 ~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 524 (542)
..+.|+++.|.++|.++++.-..+....|...+..-.+. ++++.|..+|+...+. .+.+...|...++.....
T Consensus 444 -----erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 444 -----MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp -----HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred -----HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 345688999999999999851112334454433333444 4599999999999886 344677788899988999
Q ss_pred CChhHHHHHHHHHhhcC
Q 009143 525 KESDKARDIHQKWLLRN 541 (542)
Q Consensus 525 g~~~~A~~~~~~~l~~~ 541 (542)
|+.+.|..+|+++++..
T Consensus 518 ~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKI 534 (679)
T ss_dssp TCHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998653
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.6e-13 Score=124.97 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=131.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC------C
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM------R 183 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 183 (542)
+..++..+...+...|++++|+..++++.+. .......++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998873 22334567888899999999999999999988764 1
Q ss_pred C-CCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHC------CC-CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--
Q 009143 184 P-SPNCATYNAFITGYCRVNELDKALHLFSTMANN------GI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD-- 253 (542)
Q Consensus 184 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 253 (542)
. .....++..+...+...|++++|...++++.+. +- +....++..+...+...|++++|.+.+++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224567888888999999999999999888654 21 2234567778888888889988888888887651
Q ss_pred --CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 254 --DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 254 --~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
....+....++..+...+...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001114456778888888888888888888888775
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=6.9e-13 Score=124.31 Aligned_cols=238 Identities=17% Similarity=0.118 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHC-------CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCC
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANN-------GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD-----DGKA 257 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~ 257 (542)
++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|.+.+++++... . ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK-DH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-CC
Confidence 3444444444444444444444444331 111122334444444444444444444444444321 0 00
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Q 009143 258 TSDVITSTILMDSYFKNGDKFQALALWNDMFQK------N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR----- 325 (542)
Q Consensus 258 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----- 325 (542)
+....++..+...+...|++++|...+++..+. + .+....++..+...+...|++++|++.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 133445555555555555555555555555432 1 1122344555666666666666666666665543
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHH-------HHHhcCCHHHHHHHH
Q 009143 326 -GFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSKT-------GVAPDQISYKTIIQ-------GLCIHGDIVKAREFL 389 (542)
Q Consensus 326 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~-------~~~~~g~~~~A~~~~ 389 (542)
+..| ...++..+...+...|++++|...++++.+. ...+.......... .+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1111 2334555666666666666666666665542 11111111111111 222233344444455
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 390 LSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 390 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
........ ....++..+..+|.+.|++++|.+.|++..+
T Consensus 268 ~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55544322 2456677777888888888888888777665
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=6.9e-11 Score=114.00 Aligned_cols=162 Identities=15% Similarity=0.067 Sum_probs=76.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHH
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDV----ITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTD----IVAY 299 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~ 299 (542)
....+...|++++|...+++.+...+ . .+. .+++.+...+...|++++|.+.+++...... ..+ ..++
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-P--GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-T--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-C--CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34445556666666666666665443 1 111 2345555556666666666666665543210 011 1223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----Chhh
Q 009143 300 NVLINGFCLNGDISSAFAYFCQMLKR----GFL--P-DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP----DQIS 368 (542)
Q Consensus 300 ~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 368 (542)
..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 44455555556666666555555432 111 1 12233444445555555555555555544321110 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 369 YKTIIQGLCIHGDIVKAREFLLSML 393 (542)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~ 393 (542)
+..+...+...|++++|...+++..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444555555555555443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=5e-11 Score=115.22 Aligned_cols=311 Identities=12% Similarity=-0.032 Sum_probs=186.8
Q ss_pred CChhhHHHHHHHH--HhcCChHHHHHHHHHHHhC--CCCCC--hhhHHHHHHH--HHHcCChhHHH---------HHHHH
Q 009143 116 TDYRRHVAVIRDL--CLGGKIGTALWLRRKMIQK--GTVPD--VLTHNYLVNE--LCKIGDLEKAD---------HVIRE 178 (542)
Q Consensus 116 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~ 178 (542)
|+...-+.+-..| ...+++++|..+++++.+. ....| ...|-.++.. ..-.+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444455555565 6888999999998887653 22222 3333333332 11123333333 55555
Q ss_pred HhhCCCCCC-H---HhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009143 179 MSEMRPSPN-C---ATYNAFITGYCRVNELDKALHLFSTMANNGI-RPN----RVTHNILVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 179 ~~~~~~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 249 (542)
+.....+.+ . ..+......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+.+.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 543111101 0 1223344556778888888888888765411 122 356777888888888888888888887
Q ss_pred HhCCCCCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009143 250 LADDDGKA---TSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (542)
Q Consensus 250 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~ 321 (542)
++...... .....+++.+...|...|++++|.+.+++..+. +.+ ....++..+...|...|++++|++.+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76432110 013456778888888888888888888777652 111 1234667777888888888888888887
Q ss_pred HHH-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-ChhhHHHHHHHHHhcCC---HHHHHHHH
Q 009143 322 MLK-----RGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA---P-DQISYKTIIQGLCIHGD---IVKAREFL 389 (542)
Q Consensus 322 ~~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~g~---~~~A~~~~ 389 (542)
..+ .. +....++..+...+.+.|++++|...+++..+.... + ....+..+...+...++ +.+|+..+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 776 32 223566777777888888888888888777664211 1 12234444445555666 66666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 390 LSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 390 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
++.. ........+..+...|...|++++|...|++..+
T Consensus 327 ~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6521 1111223456677777778888888777777654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=1.7e-10 Score=111.25 Aligned_cols=202 Identities=13% Similarity=0.030 Sum_probs=93.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 009143 228 ILVHALCKKGLLGDAVKFLGEVLADDDG--K--ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ----TDIVAY 299 (542)
Q Consensus 228 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 299 (542)
.+...+...|++++|.+.+++.+..... . .+....++..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 3444444455555555554444432100 0 0012234444555555555555555555554432110 112344
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHH
Q 009143 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPD--VITYN----TLLNCLCKQGKLDEASHFYGVLSKTGVAPD---QISYK 370 (542)
Q Consensus 300 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 370 (542)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+.........+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 5555555566666666666655543211111 11111 122234556666666666655543221111 11334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 371 TIIQGLCIHGDIVKAREFLLSMLEK----SVVPEP-HIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555566666666666666665432 111111 2445556666667777777776666554
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=2.1e-10 Score=110.78 Aligned_cols=232 Identities=10% Similarity=-0.015 Sum_probs=136.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CC-CHHH
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQKNI-QT----DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF-----LP-DVIT 333 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~p-~~~~ 333 (542)
......+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+.+..+... .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3345556667777777777777664310 01 234566677777777777777777777654210 11 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 009143 334 YNTLLNCLCKQGKLDEASHFYGVLSKT----GVA-PDQISYKTIIQGLCIHGDIVKAREFLLSMLE-----KSVVPEPHI 403 (542)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 403 (542)
++.+...|...|++++|...+.+..+. +.+ ....++..+...|...|++++|.+.+++.++ ..+. ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 666777777777777777777666542 111 1123566677777777888888888777776 4433 3666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHhhcccccccCC---hHHHHHHHHHHHhCCCCCC-H
Q 009143 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGV---SSNVFTFNALILAETRGASCNLGH---IHLALQLYDEMLRRGITPD-I 476 (542)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~ 476 (542)
+..+...+.+.|++++|...+++..+... .|........+.. .+...++ +++|+..+++. +..|+ .
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~----ly~~~~~~~~~~~al~~~~~~---~~~~~~~ 336 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA----VYKETVDERKIHDLLSYFEKK---NLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH----HHSSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHhCCCcHHHHHHHHHHHHhC---CChhHHH
Confidence 77777888888888888888877766211 1222221122222 1444555 55555555542 11222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 477 ITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
..+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445566666666666666666666544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=8.3e-11 Score=100.64 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 009143 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (542)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 236 (542)
..+...+...|++++|.+.++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3344444444444444444444443322 233444444444444444444444444444331 12334444444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009143 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (542)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 316 (542)
|++++|.+.++++....+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.
T Consensus 90 ~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANP----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp TCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444333 334444444444444444444444444444432 233444444444444444444444
Q ss_pred HHHHHHH
Q 009143 317 AYFCQML 323 (542)
Q Consensus 317 ~~~~~~~ 323 (542)
+.++++.
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=1.2e-10 Score=103.76 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=159.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (542)
.|+..|......+...|++++|+..|++.++....++...+..+...+...|++++|.+.+++..+..|. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888899999999999999999999998754467888888999999999999999999999987763 678899999
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCCh-------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCC--cHHHHHH
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNR-------VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS--DVITSTI 266 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~ 266 (542)
.++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.++++++..+ . +..++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS----KKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC----HHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC----CcccHHHHHH
Confidence 99999999999999999998753 2234 4578888889999999999999999999876 6 6788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009143 267 LMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG 326 (542)
Q Consensus 267 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 326 (542)
+...+...|+ ..++++...+ ..+...|.... ....+.+++|+..|++..+..
T Consensus 159 l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 9988876553 3455555543 33444554443 234567899999999999873
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=6.8e-11 Score=122.47 Aligned_cols=167 Identities=12% Similarity=0.038 Sum_probs=109.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
.+..+++.|...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 455666666666666666666666666666654 3456666666666666666666666666666652 22455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 009143 339 NCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (542)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (542)
.++...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|++.|++.++..+. +...|..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 66677777777777776666643 224556666777777777777777777777766544 5666777777777777777
Q ss_pred HHHHHHHHHHh
Q 009143 419 NAFSIRDLMLS 429 (542)
Q Consensus 419 ~A~~~~~~m~~ 429 (542)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666554
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=4.8e-11 Score=123.60 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=116.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
++.+|+.|...+.+.|++++|+..|++.++.. +-+..+|..+...|.+.|++++|++.|++..+..+. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45577777777777777777777777777653 224566777777777777777777777777776542 5667777777
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
+|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|++.++++++..+ .+..++..+...+...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P----~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP----DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHhhhhhHHHhccc
Confidence 7777777777777777776642 22456677777777777777777777777777665 566677777777777777
Q ss_pred HHHHHHHHHHHHH
Q 009143 277 KFQALALWNDMFQ 289 (542)
Q Consensus 277 ~~~a~~~~~~~~~ 289 (542)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.6e-10 Score=98.76 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (542)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+..+ .+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a 83 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP----DNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHH
Confidence 445566666777777777777777665542 23556666666777777777777777777766554 5566666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (542)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 77777777777777777666553 4456666666666666777777777776666553 334556666666666666666
Q ss_pred HHHHHHHHHHH
Q 009143 349 EASHFYGVLSK 359 (542)
Q Consensus 349 ~A~~~~~~~~~ 359 (542)
+|...++...+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.2e-10 Score=102.04 Aligned_cols=197 Identities=11% Similarity=-0.032 Sum_probs=158.1
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHH
Q 009143 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 230 (542)
.++..+......+...|++++|.+.|++..+..+.++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888999999999999999999999988765677788789999999999999999999998863 23567888999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDV-------ITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNV 301 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 301 (542)
..+...|++++|.+.+++.++..+ .+. .+|..+...+...|++++|.+.|++..+.. +. +...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP----GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 999999999999999999999876 555 568889999999999999999999999874 33 4677888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (542)
+...+...| ...++++...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 888876543 44456665553 33444454443 234567899999999998863
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=5.3e-11 Score=109.58 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=146.1
Q ss_pred hcCChHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC------CC-CCCHHhHHHHH
Q 009143 130 LGGKIGTALWLRRKMIQK-------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM------RP-SPNCATYNAFI 195 (542)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li 195 (542)
..|++++|+..+++.++. ..+....++..+...|...|++++|.+.++++.+. +. .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 11223556777888888888888888888877653 11 12355777888
Q ss_pred HHHHHcCChhhHHHHHHHHHHC------C-CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCCCcHHH
Q 009143 196 TGYCRVNELDKALHLFSTMANN------G-IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVIT 263 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~------g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 263 (542)
..|...|++++|.+.+++.... . .+....++..+...+...|++++|.+.++++++. +. ..+....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHH
Confidence 8888888888888888887654 1 1223566778888888888888888888888775 11 11145677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC-CCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCCCC
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQK-------NI-QTDIVAYNVLINGFCLNGDI------SSAFAYFCQMLKRGFLP 329 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~~~~------~~A~~~~~~~~~~~~~p 329 (542)
+..+...+...|++++|...+++..+. .. ......|..+.......+.. ..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888888899999999999888888753 11 12223333333333333322 222222221111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
...++..+...|...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888999999999999999887653
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.2e-10 Score=107.17 Aligned_cols=230 Identities=12% Similarity=0.026 Sum_probs=163.1
Q ss_pred HHcCChhHHHHHHHHHhhC-------CCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHC------CC-CCChHHHHHH
Q 009143 164 CKIGDLEKADHVIREMSEM-------RPSPNCATYNAFITGYCRVNELDKALHLFSTMANN------GI-RPNRVTHNIL 229 (542)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~l 229 (542)
...|++++|.+.+++..+. ..+....++..+...|...|++++|+..+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467888888777776652 22234678889999999999999999999998754 21 2235678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHH
Q 009143 230 VHALCKKGLLGDAVKFLGEVLADD-----DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK------N-IQTDIV 297 (542)
Q Consensus 230 ~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~ 297 (542)
...+...|++++|.+.+.+++... + ..+....++..+...+...|++++|...+++..+. + .+....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGK-FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998751 1 11256788999999999999999999999998865 1 133466
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHHhcCCHHHH------HHHHHHHHHCCCC
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKR-------GFLPDV-ITYNTLLNCLCKQGKLDEA------SHFYGVLSKTGVA 363 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~~~p~~-~~~~~li~~~~~~g~~~~A------~~~~~~~~~~~~~ 363 (542)
++..+...+...|++++|...++++.+. ...+.. ..+..+...+...+....+ ...+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7889999999999999999999998764 122222 2333333333333332222 222221111 112
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009143 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (542)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (542)
....++..+...|...|++++|...+++.++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23457888999999999999999999998764
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=4.8e-09 Score=95.38 Aligned_cols=181 Identities=14% Similarity=0.125 Sum_probs=88.4
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (542)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 286 (542)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..++.. .+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE--GTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555554433 3344444455566666666666666666655544211 3455555566666666666666666666
Q ss_pred HHHCCCCC-----CHHHHHHHHHH--HHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 287 MFQKNIQT-----DIVAYNVLING--FCL--NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (542)
Q Consensus 287 ~~~~~~~~-----~~~~~~~li~~--~~~--~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (542)
|.+. .| +..+...|+.+ ... .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6544 23 23333344433 221 22566666666665443 333222233333555566666666665544
Q ss_pred HHCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009143 358 SKTG---------VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS 396 (542)
Q Consensus 358 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 396 (542)
.+.- -+.++.+...+|......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 3320 02234444333333333444 5555555555543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=2.1e-09 Score=99.60 Aligned_cols=128 Identities=16% Similarity=0.022 Sum_probs=56.0
Q ss_pred HHHHcCChhhHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CCCcHHHHHHHHH
Q 009143 197 GYCRVNELDKALHLFSTMANN----GIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK--ATSDVITSTILMD 269 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 269 (542)
.|...|++++|.+.|++.... |-+++ ..+|..+..+|.+.|++++|+..+++.+...+.. ......+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666665555332 11111 2445555555555566666655555554422100 0001234444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 270 SYFKN-GDKFQALALWNDMFQKNIQ-TD----IVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 270 ~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
.|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|+..|++..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55543 5555555555444432100 00 22344444444444444444444444444
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=2.3e-09 Score=99.35 Aligned_cols=239 Identities=12% Similarity=0.010 Sum_probs=158.2
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHc--C-ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 009143 170 EKADHVIREMSEMRPSPNCATYNAFITGYCRV--N-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFL 246 (542)
Q Consensus 170 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 246 (542)
.+|.+++.+..+.-. +....| . +.+. + ++++|...|++. ...|...|++++|.+.+
T Consensus 2 ~~a~~~~~~a~k~~~-~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKKGV-PSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHHSS-CCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHHhC-cCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 356666666655432 221222 2 2232 2 488888888776 34577899999999999
Q ss_pred HHHHhCCCC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhC-CCHHHHHHH
Q 009143 247 GEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI---QT--DIVAYNVLINGFCLN-GDISSAFAY 318 (542)
Q Consensus 247 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~-~~~~~A~~~ 318 (542)
.+.+..... .......+|+.+...|.+.|++++|+..+++..+... .+ -..+++.+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 988764210 1002256899999999999999999999988875310 11 145788888888886 999999999
Q ss_pred HHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCHHHHHH
Q 009143 319 FCQMLKRGFLP-D----VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQI------SYKTIIQGLCIHGDIVKARE 387 (542)
Q Consensus 319 ~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~ 387 (542)
|++..+..... + ..++..+...+.+.|++++|...|++..+........ .+..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98887642100 1 3467788888889999999999998888754322221 45666777888889999998
Q ss_pred HHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 009143 388 FLLSMLEKSVVP-E---PHIWNVIIDGYG--RCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 388 ~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 429 (542)
.+++.++..+.. + ...+..++.++. ..+++++|+..|+.+..
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 888887653321 1 113444555554 45667777777766554
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=1.6e-08 Score=92.03 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=129.6
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009143 242 AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTDIVAYNVLINGFCLNGDISSAFAYFC 320 (542)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~ 320 (542)
|+..+++.+..+. ++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 a~~~l~~l~~~~~----~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 NIEELENLLKDKQ----NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp CCHHHHHTTTTSC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6677777776553 4455566888889999999999999998876652 2467778888889999999999999999
Q ss_pred HHHHcCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 321 QMLKRGFLP-----DVITYNTLLNCLC--KQG--KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLS 391 (542)
Q Consensus 321 ~~~~~~~~p-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 391 (542)
+|.+. .| +..+...++.++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 98876 55 3566666666633 234 889999999998664 34433344455578888999999999887
Q ss_pred HHhCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 009143 392 MLEKS---------VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (542)
Q Consensus 392 ~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 436 (542)
+.+.. -+-++.++-.+|......|+ +|.++++++.+. .|+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 66531 02366677555555555666 778888888874 4554
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=7.3e-08 Score=95.71 Aligned_cols=366 Identities=9% Similarity=-0.064 Sum_probs=195.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-hhHHHHHHHHHhhC-CCC-CCHHhHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD-LEKADHVIREMSEM-RPS-PNCATYNAFIT 196 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~li~ 196 (542)
.|...+..+-. |+++.+..+|++.+.. .|++..|...+....+.+. .+....+|+..... |.. .+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 44444444443 5666666666666653 3566666665555555442 24445555554432 221 24455555555
Q ss_pred HHH----HcCChhhHHHHHHHHHHCCCCCC-h-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Q 009143 197 GYC----RVNELDKALHLFSTMANNGIRPN-R-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (542)
Q Consensus 197 ~~~----~~g~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (542)
.+. ..++.+.+..+|++.... ++. . ..|..... +.+......+.+++.+.
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~--------------------- 149 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKIVGDT--------------------- 149 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHH---------------------
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHHHHHH---------------------
Confidence 432 224455566666666542 111 1 11111111 11111111122221111
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009143 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG--D-----ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343 (542)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 343 (542)
.+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+.-+.+
T Consensus 150 ---~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 150 ---LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 1122333333433332100113345555444432211 1 345667888877753 4456777777777788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------CCCCHHHHHHHHHHH
Q 009143 344 QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS------------VVPEPHIWNVIIDGY 411 (542)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~~~~~li~~~ 411 (542)
.|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.- .......|...+...
T Consensus 226 ~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 88888888888888876 22322222 22221111111 22221110 001124566667777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhcccccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009143 412 GRCGDLSNAFSIRDLMLSFGVSSNVFTFN--ALILAETRGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 489 (542)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 489 (542)
.+.++.+.|..+|+++ +.. ..+...|. +.+. +...++.+.|..+|+...+.. +-++..+...++.....
T Consensus 297 ~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE------~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE------YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH------HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH------HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHc
Confidence 7788899999999998 321 12333333 2232 222347999999999988742 22345566677877889
Q ss_pred CCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 490 GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 490 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++++
T Consensus 368 ~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 368 GDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999872 2567888888877888999999999988864
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=2.8e-09 Score=96.98 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=78.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CC-HHh
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD---VLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PN-CAT 190 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~ 190 (542)
.++..+..+...+.+.|++++|+..|+++++... .+ ...+..+..+|.+.|++++|...|+++.+..|. |. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3556777788888889999999999999887632 13 567788888889999999999999998886552 22 456
Q ss_pred HHHHHHHHHH--------cCChhhHHHHHHHHHHC
Q 009143 191 YNAFITGYCR--------VNELDKALHLFSTMANN 217 (542)
Q Consensus 191 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~ 217 (542)
+..+..++.. .|++++|+..|+++.+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 6677777887 88888888888888775
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=2.3e-09 Score=97.62 Aligned_cols=104 Identities=9% Similarity=-0.008 Sum_probs=81.0
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-CCC-hHHH
Q 009143 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--CATYNAFITGYCRVNELDKALHLFSTMANNGI-RPN-RVTH 226 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 226 (542)
.+...+..+...+.+.|++++|.+.|+++.+..|... ...+..+..++.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3566777788888899999999999999988665321 56778888889999999999999999887521 112 4566
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHhCCC
Q 009143 227 NILVHALCK--------KGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 227 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~ 254 (542)
..+..++.. .|++++|...|+++++..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 777788888 8899999999999888766
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=8.6e-09 Score=82.57 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLA 251 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 251 (542)
.+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33334444444444444444443321 11233333333333334444444444443333
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=7.6e-09 Score=82.89 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 235 (542)
+..+...+...|++++|.++++++.+..+ .+...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44455555555555555555555554433 244455555555555555555555555554432 2234444455555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
.|++++|.+.++++....+ .+..++..++..+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555554433 3344444445555555555555555544443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=1.9e-09 Score=112.14 Aligned_cols=170 Identities=13% Similarity=0.004 Sum_probs=90.4
Q ss_pred HHcCChhHHHHHHHHHh--------hCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 009143 164 CKIGDLEKADHVIREMS--------EMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 164 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 235 (542)
...|++++|++.+++.. +..+ .+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555555 3322 234455555555555566666666555555432 2234555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 315 (542)
.|++++|.+.|+++++..+ .+...+..+...+.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l~P----~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP----GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST----TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666555554 445555555556666666655 55555555543 34455555556666666666666
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 009143 316 FAYFCQMLKRGFLPD-VITYNTLLNCLCK 343 (542)
Q Consensus 316 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 343 (542)
++.|+++.+. .|+ ...+..+..++..
T Consensus 554 ~~~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 554 VRTLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHHHHhhccc--CcccHHHHHHHHHHHHc
Confidence 6666555543 232 3344444444444
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=5.1e-09 Score=91.55 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=37.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (542)
+..+|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++++++..+ .+..++..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA----DNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHH
Confidence 4445555555555555555554432 12344455555555555555555555555555444 444455555554443
Q ss_pred c
Q 009143 274 N 274 (542)
Q Consensus 274 ~ 274 (542)
.
T Consensus 135 ~ 135 (208)
T 3urz_A 135 T 135 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=1.1e-08 Score=89.44 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009143 267 LMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343 (542)
Q Consensus 267 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 343 (542)
+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+..++..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 5555555555555555555555443 3345555555555555555555555555555542 2234444444444433
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=3.9e-08 Score=87.08 Aligned_cols=204 Identities=10% Similarity=-0.001 Sum_probs=119.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH--HhHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTV-P-DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC--ATYN 192 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 192 (542)
++..+..+...+.+.|++++|+..|+++++.... | ....+..+..+|.+.|++++|+..|+++.+..|.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777788888888888888888875321 1 1346777888888888888888888888876654221 2344
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (542)
.+..++...+.. .+ ..|..+...+...|+.++|...|+++++..+ .+..++..+....
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P----~~~~a~~a~~~l~- 140 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYP----NSQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCT----TCTTHHHHHHHHH-
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCc----CChhHHHHHHHHH-
Confidence 444444433211 11 1122233344456788888888888888776 2322222111100
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHH
Q 009143 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD----VITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 348 (542)
.+...+. .....+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|+.+
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcH
Confidence 0000000 11234556677778888888888887776 233 245667777888888888
Q ss_pred HHHHHHHHHHHCC
Q 009143 349 EASHFYGVLSKTG 361 (542)
Q Consensus 349 ~A~~~~~~~~~~~ 361 (542)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 8888887777654
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=3.6e-08 Score=86.37 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC----ChhhHHHHH
Q 009143 136 TALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN----ELDKALHLF 211 (542)
Q Consensus 136 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 211 (542)
+|++.|++..+.| ++.++..+...|...+++++|.+.|++..+.+ +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 66777777777777888888888888877654 45666667776666 5 778888888
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHH
Q 009143 212 STMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALAL 283 (542)
Q Consensus 212 ~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 283 (542)
++..+.| +...+..|...|.. .+++++|.+++++..+.++.. ....++..|...|.. .++.++|...
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD--AAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH--HHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc--chHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8876654 55666677777766 677788888888777655300 126677777777777 6677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHcC
Q 009143 284 WNDMFQKNIQTDIVAYNVLINGFCLN-G-----DISSAFAYFCQMLKRG 326 (542)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~A~~~~~~~~~~~ 326 (542)
|++..+. +.+...+..|...|... | +.++|...|++..+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777765 23444566666666543 2 6777777777777665
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=2e-09 Score=88.53 Aligned_cols=144 Identities=8% Similarity=0.008 Sum_probs=90.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChh
Q 009143 126 RDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (542)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (542)
..+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+..| .+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34455567777777777665531 12344556677777777777777777777776655 35667777777777777777
Q ss_pred hHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKF-LGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
+|+..|++..+.. +-+..++..+...+.+.|+.++|.+. ++++++..| .+..+|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P----~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP----GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST----TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHhCc
Confidence 7777777776642 22456666677777777776655443 466666655 555666666555555553
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=2.3e-08 Score=88.63 Aligned_cols=202 Identities=11% Similarity=0.053 Sum_probs=98.6
Q ss_pred chhHHH-HHHHHHHhhHHHHHHHHhhCCCCCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCh-hhHHH
Q 009143 83 PQAVFN-ALDLILKENLDRLKTMRDTGPVRCTLET-DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTV-PDV-LTHNY 158 (542)
Q Consensus 83 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~~ 158 (542)
+...++ +...+-.+.++.+...++.+.....-.+ ....+..+..++.+.|++++|+..|+++++.... +.. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344444 3444445666666666655431111111 2357888899999999999999999999986322 111 24555
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcC
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKG 237 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g 237 (542)
+..++...|.. .+ ..|..+...+...|++++|...|+++.+. .|+. .+......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~------ 138 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR------ 138 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH------
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH------
Confidence 56666553311 00 01112223333455666666666666553 2222 12111100
Q ss_pred ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHH
Q 009143 238 LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD---IVAYNVLINGFCLNGDISS 314 (542)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~ 314 (542)
+..+.. ........+...|.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++
T Consensus 139 --------l~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 139 --------LVFLKD-------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp --------HHHHHH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --------HHHHHH-------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHH
Confidence 000000 001112234555566666666666666665542 111 1345556666666666666
Q ss_pred HHHHHHHHHHc
Q 009143 315 AFAYFCQMLKR 325 (542)
Q Consensus 315 A~~~~~~~~~~ 325 (542)
|.+.++.+...
T Consensus 203 A~~~~~~l~~~ 213 (225)
T 2yhc_A 203 AEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 66666665554
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=4.7e-09 Score=109.21 Aligned_cols=174 Identities=16% Similarity=0.002 Sum_probs=142.2
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009143 234 CKKGLLGDAVKFLGEVL--------ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (542)
...|++++|++.+++++ +..+ .+...+..+...+...|++++|.+.|++..+.+ +.+...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS----ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT----TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc----cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHH
Confidence 67899999999999998 5554 677888999999999999999999999998775 5678889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 009143 306 FCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKA 385 (542)
Q Consensus 306 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 385 (542)
+...|++++|++.|+++.+.. +.+...+..+..++.+.|++++ ...|++..+.+ +.+...+..+..++.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998874 3356778888899999999999 99999988864 33567888888999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009143 386 REFLLSMLEKSVVPEPHIWNVIIDGYGRCGD 416 (542)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 416 (542)
.+.++++++.++. +...+..+..++...++
T Consensus 554 ~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999998876543 56677778887766554
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=7.3e-09 Score=95.56 Aligned_cols=166 Identities=11% Similarity=0.073 Sum_probs=110.1
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHH-HH
Q 009143 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN-IL 229 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l 229 (542)
.+...+..+...+.+.|++++|.+.|++..+..|. +...+..+...+.+.|++++|...++++... .|+..... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34455666777777778888888887777776653 5667777777777778888888777776554 34433222 22
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 009143 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCL 308 (542)
Q Consensus 230 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 308 (542)
...+...++.++|.+.+++.+...+ .+...+..+...+...|++++|...|+++.+.... .+...+..++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENP----EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCC----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 2335566667777777777777665 66777777777777777777777777777765311 115566677777777
Q ss_pred CCCHHHHHHHHHHHH
Q 009143 309 NGDISSAFAYFCQML 323 (542)
Q Consensus 309 ~~~~~~A~~~~~~~~ 323 (542)
.|+.++|...|++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 777777766666544
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=1.7e-09 Score=89.05 Aligned_cols=144 Identities=12% Similarity=-0.018 Sum_probs=88.5
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 009143 160 VNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (542)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 239 (542)
...+...|++++|++.++......+ .+...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3444455677777777776654332 134455566677777777777777777776643 22556677777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL-WNDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
++|...|+++++..+ .+..++..+...+.+.|+.++|.+. +++..+.. |-++.+|......+...|
T Consensus 82 ~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELNP----TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 777777777777665 5666677777777777776655443 45555543 445556665555555544
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=5.1e-09 Score=88.86 Aligned_cols=160 Identities=12% Similarity=0.025 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH-HH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG-YC 199 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~ 199 (542)
+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|...++++.+..| +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4444455555555555555555554431 12344555555555555555555555555544332 22222211111 11
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (542)
..+...+|+..+++..+.. +.+...+..+...+...|++++|...++++++..+.. .+...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA--QDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--TTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ChHHHHHHHHHHHHHhCCCCc
Confidence 1112223344444444321 1123444444444444444444444444444443311 123344444444444444444
Q ss_pred HHHHHHH
Q 009143 280 ALALWND 286 (542)
Q Consensus 280 a~~~~~~ 286 (542)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=2.9e-07 Score=84.57 Aligned_cols=222 Identities=14% Similarity=0.062 Sum_probs=129.0
Q ss_pred hcCC-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC--ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH----HHc-
Q 009143 130 LGGK-IGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG--DLEKADHVIREMSEMRPSPNCATYNAFITGY----CRV- 201 (542)
Q Consensus 130 ~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 201 (542)
+.|. .++|+.+++.++... +-+..+|+.-...+...| +++++++.++.+....|+ +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3443 357888888877753 224456777777777777 788888888888776664 555666554444 444
Q ss_pred --CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC-
Q 009143 202 --NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG--DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD- 276 (542)
Q Consensus 202 --g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 276 (542)
+++++++++++++.+.. +-+..+|..-.-.+.+.|.++ ++++.++++++.++ .+-.+|+.....+...|.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~----~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL----KNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHSSGGG
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcccc
Confidence 56677777777776653 225566666666666666666 67777777776665 666666666666555554
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH
Q 009143 277 -----KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS-AFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 277 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~ 348 (542)
++++++.++.+.... +-|...|+.+...+.+.|+..+ +.++..++.+.+ -..++..+..+...+.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 555666665555544 4455555555555555554322 233333333221 1223444555555555555555
Q ss_pred HHHHHHHHHHH
Q 009143 349 EASHFYGVLSK 359 (542)
Q Consensus 349 ~A~~~~~~~~~ 359 (542)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=9.2e-09 Score=87.24 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHH-
Q 009143 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA- 232 (542)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~- 232 (542)
..+..+...+.+.|++++|...|++..+..| .+...+..+...+.+.|++++|+..+++.... .|+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH
Confidence 3566777889999999999999999887665 37788999999999999999999999998764 3444433332222
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCC
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT-DIVAYNVLINGFCLNGD 311 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 311 (542)
+...+...+|...+++.++..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANP----DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHhhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 2233344568999999999877 788999999999999999999999999999885332 35688999999999999
Q ss_pred HHHHHHHHHHHHH
Q 009143 312 ISSAFAYFCQMLK 324 (542)
Q Consensus 312 ~~~A~~~~~~~~~ 324 (542)
.++|...|++...
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999988764
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=4.8e-07 Score=83.14 Aligned_cols=219 Identities=11% Similarity=-0.014 Sum_probs=154.0
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC--ChhhHHHHHHHHHHCCCCCChHHHHHHHHHH----Hhc---CC
Q 009143 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN--ELDKALHLFSTMANNGIRPNRVTHNILVHAL----CKK---GL 238 (542)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~---g~ 238 (542)
..++|+++++.++..+|. +...|+.--.++...| +++++++.++.+.....+ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 346899999999887764 6778888888888888 899999999998876422 455565544444 444 78
Q ss_pred hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-----
Q 009143 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF--QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD----- 311 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 311 (542)
+++++++++++++.++ .+..+|+...-.+.+.|.++ ++++.++++.+.+ +.|...|+.....+...+.
T Consensus 126 ~~~EL~~~~~~l~~~p----kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 126 PYREFDILEAMLSSDP----KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp THHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 8888999999988777 78888888888888888877 8888888888776 5677778777777766665
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 009143 312 -ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE-ASHFYGVLSKTG--VAPDQISYKTIIQGLCIHGDIVKARE 387 (542)
Q Consensus 312 -~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (542)
++++++.+.++.... +-|...|+-+-..+.+.|+... +..+...+...+ -+.+...+..+...|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 777777777777664 3456667666666666665333 344444443321 12344556666666666666666666
Q ss_pred HHHHHHh
Q 009143 388 FLLSMLE 394 (542)
Q Consensus 388 ~~~~~~~ 394 (542)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=2.2e-08 Score=92.39 Aligned_cols=168 Identities=12% Similarity=0.001 Sum_probs=139.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH-hHHHH
Q 009143 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCA-TYNAF 194 (542)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 194 (542)
.+...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|.+.++++....| +.. .....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHH
Confidence 455677888889999999999999999999874 33678899999999999999999999999987654 433 23333
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc
Q 009143 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (542)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (542)
...+.+.++.++|...+++..... +.+...+..+...+...|++++|...+.++++..+.. .+...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~--~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA--ADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG--GGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc--ccchHHHHHHHHHHHc
Confidence 344677888999999999988763 4467889999999999999999999999999988722 3488999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 009143 275 GDKFQALALWNDMFQ 289 (542)
Q Consensus 275 g~~~~a~~~~~~~~~ 289 (542)
|+.++|...+++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999887653
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=1.6e-06 Score=86.05 Aligned_cols=369 Identities=10% Similarity=0.008 Sum_probs=213.8
Q ss_pred chhHHH-HHHHHHHhhHHHHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CCC-CChhhHHH
Q 009143 83 PQAVFN-ALDLILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGK-IGTALWLRRKMIQK-GTV-PDVLTHNY 158 (542)
Q Consensus 83 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-p~~~~~~~ 158 (542)
-..++. .+..+..++.++++.+++... ...|++..|...+....+.+. .+....+|+..+.. |.. ++...|..
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal---~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCL---KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 345555 344444477889999998865 335799999999988887764 46677889988864 533 35677777
Q ss_pred HHHHHH----HcCChhHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 009143 159 LVNELC----KIGDLEKADHVIREMSEMRPSPNC-ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHAL 233 (542)
Q Consensus 159 li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 233 (542)
.+..+. ..|+.+.+.++|++.+.. |..+. ..|......- +......+..++.+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~------------------ 150 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFE-LELNKITGKKIVGDTL------------------ 150 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH------------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh------------------
Confidence 776654 346788999999999874 32222 2333322221 1112222333222211
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG--D-----KFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
+.+..|..+++++...-. . .+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+
T Consensus 151 ---~~y~~ar~~y~~~~~~~~-~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 151 ---PIFQSSFQRYQQIQPLIR-G--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYL 223 (493)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-T--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 122233333333322111 0 12334444444332211 0 234667777777653 55677787777778
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCChhhHHHHHH
Q 009143 307 CLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG---------V---APDQISYKTIIQ 374 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~---~~~~~~~~~li~ 374 (542)
.+.|+.+.|..+|++.... +.+...+. .|....+.++. ++.+.+.- . ......|...+.
T Consensus 224 ~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 8888888888888888876 22322222 12222111221 22222110 0 011245666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccccc
Q 009143 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR-CGDLSNAFSIRDLMLSFGVSSN-VFTFNALILAETRGASC 452 (542)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 452 (542)
...+.++.+.|..+|.++ .. ...+...|...+..-.. .++.+.|..+|+...+.. |+ ...+...+.- ..
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~-----e~ 365 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF-----LL 365 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH-----HH
T ss_pred HHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH-----HH
Confidence 666778899999999999 32 22344455433322222 336999999999988742 33 2233333432 45
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 453 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 366 ~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6699999999999873 2467788888777788999999998888775
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=2.3e-08 Score=102.13 Aligned_cols=164 Identities=11% Similarity=0.014 Sum_probs=110.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHH
Q 009143 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHL 210 (542)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (542)
.|++++|+..+++..+.. +.+...+..+...|.+.|++++|.+.+++..+..+ .+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888877653 23567788888888888888888888888887665 3677788888888888888888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 009143 211 FSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN---GDKFQALALWNDM 287 (542)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~ 287 (542)
+++..+.. +.+...+..+...+.+.|++++|.+.++++++..+ .+...+..+...+... |+.++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP----EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88887753 33567778888888888888888888888888766 6677788888888888 8888888888888
Q ss_pred HHCCCCCCHHHHHHH
Q 009143 288 FQKNIQTDIVAYNVL 302 (542)
Q Consensus 288 ~~~~~~~~~~~~~~l 302 (542)
.+.+ +.+...|..+
T Consensus 155 l~~~-p~~~~~~~~l 168 (568)
T 2vsy_A 155 VAQG-VGAVEPFAFL 168 (568)
T ss_dssp HHHT-CCCSCHHHHT
T ss_pred HhcC-CcccChHHHh
Confidence 7765 3333444433
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=2.2e-07 Score=81.33 Aligned_cols=176 Identities=13% Similarity=-0.020 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----CHHHHH
Q 009143 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG----DISSAF 316 (542)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~A~ 316 (542)
+|.+.|++..+. .+..++..+...|...+++++|.+.|++..+.| ++..+..|...|.. + ++++|+
T Consensus 4 eA~~~~~~aa~~------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEA------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 345555555543 234556666666666666666666666666654 45556666666655 4 666777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHHHHH
Q 009143 317 AYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEASHFYGVLSKTGVA-PDQISYKTIIQGLCI----HGDIVKARE 387 (542)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~ 387 (542)
+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|.. .++..+..|...|.. .+++++|..
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 7777666544 44555556665555 56677777777666665421 014556666666666 566777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 009143 388 FLLSMLEKSVVPEPHIWNVIIDGYGRC-G-----DLSNAFSIRDLMLSFG 431 (542)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 431 (542)
.|++..+.+ .+...+..|...|... | ++++|...|++..+.|
T Consensus 151 ~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777776651 2344556666666542 2 6777777777766654
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=3.6e-08 Score=100.69 Aligned_cols=154 Identities=14% Similarity=-0.017 Sum_probs=97.1
Q ss_pred cCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 009143 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 280 (542)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++.++..+ .+..++..+...+...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP----GHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHH
Confidence 366777777777776542 23466777777777777777777777777777665 6677777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 009143 281 LALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ---GKLDEASHFYGVL 357 (542)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 357 (542)
.+.+++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77777777664 4456677777777777777777777777777653 33456667777777777 7777777777777
Q ss_pred HHCC
Q 009143 358 SKTG 361 (542)
Q Consensus 358 ~~~~ 361 (542)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6654
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=1.9e-08 Score=93.81 Aligned_cols=95 Identities=16% Similarity=-0.034 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hh
Q 009143 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGF---LP--DVITYNTLLNCLCKQGKLDEASHFYGVLSKT----GVAPD-QI 367 (542)
Q Consensus 298 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~ 367 (542)
++..+...|.. |++++|+..|++..+... .+ ...++..+...|.+.|++++|...|++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444555544 555555555555443210 00 1234555666666666666666666655542 11011 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 368 SYKTIIQGLCIHGDIVKAREFLLSML 393 (542)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (542)
.+..+...+...|++++|...+++.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444455555677777777777766
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=1.5e-07 Score=87.72 Aligned_cols=161 Identities=9% Similarity=-0.058 Sum_probs=79.4
Q ss_pred HHHHcCChhhHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCCCcHHHHHHHHH
Q 009143 197 GYCRVNELDKALHLFSTMANN----GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDD--GKATSDVITSTILMD 269 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 269 (542)
.|...|++++|...|.+..+. |-.+ -..+|..+...|.+.|++++|...+++.+.... ........++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544332 1000 023455555555555555555555555543311 000012345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 009143 270 SYFKNGDKFQALALWNDMFQKNI---QT--DIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLPD-VITYNTLLN 339 (542)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~ 339 (542)
.|.. |++++|+..|++..+... .+ ...++..+...+.+.|++++|+..|++..+. +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6655 666666666665543210 00 1345566666666666666666666665542 11111 124445555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009143 340 CLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~ 358 (542)
++...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5556666666666666665
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=3.1e-07 Score=80.28 Aligned_cols=124 Identities=9% Similarity=-0.063 Sum_probs=62.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (542)
+...+...|++++|+..|++.. .|+...+..+...+...|++++|.+.+++.+...+ .+..++..+...+..
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHH
Confidence 3344444455555555444431 33444455555555555555555555555554443 444455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC---------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 274 NGDKFQALALWNDMFQKNIQ---------------TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.|++++|...|++..+.... .....+..+..++...|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555555443200 11245556666666666666666666666554
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=3.2e-06 Score=78.47 Aligned_cols=175 Identities=13% Similarity=0.035 Sum_probs=126.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHc-C-Chh
Q 009143 129 CLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFITGYCRV-N-ELD 205 (542)
Q Consensus 129 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 205 (542)
...+..++|+.+++.++... +-+..+|+.-...+...| .++++++.++.++...|+ +..+|+.-...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 34455568889999988864 225566787777777778 588999999999888774 778888877777766 6 788
Q ss_pred hHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC-
Q 009143 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG--------DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD- 276 (542)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 276 (542)
+++++++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++++.++ .+..+|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp----~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG----RNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcccc
Confidence 8888888888754 236667766555555555555 78888888888776 778888888877777765
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009143 277 ------KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (542)
Q Consensus 277 ------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 311 (542)
++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 577777777777654 5566677666665555554
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=4.9e-08 Score=89.65 Aligned_cols=194 Identities=10% Similarity=-0.011 Sum_probs=116.9
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (542)
+...+..+...+.+.|++++|...+++++...+ .+...|..+...+.+.|++++|...+++..+.. +.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 445566677777777777777777777777665 567777777777778888888888877777664 456677777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDV-ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (542)
+..++...|++++|...|++..+.. |+. ..+...+....+. ..+.. +........+.+......+. .+ ..|
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~ 149 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLT-RL-IAA 149 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHH
Confidence 7778888888888888887776542 211 1111111111111 11111 11222223334444433332 22 257
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 009143 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-GDLSNAFSIRDLMLS 429 (542)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 429 (542)
+.++|++.+++..+..+. +......+...+.+. +.+++|.++|..+.+
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888887765432 334444444444444 567888888887765
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=2.9e-07 Score=85.16 Aligned_cols=167 Identities=11% Similarity=-0.001 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CC----HHhH
Q 009143 122 VAVIRDLCLGGKIGTALWLRRKMIQKGT-VPDV----LTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PN----CATY 191 (542)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 191 (542)
...+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|.+.+++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346677788888888888888776421 2221 12234556666667888888888877763322 22 2357
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHC-----CCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCCCcHHH
Q 009143 192 NAFITGYCRVNELDKALHLFSTMANN-----GIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVIT 263 (542)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ 263 (542)
+.+...|...|++++|+..|+++.+. +..+. ..++..+...|.+.|++++|.+.+++.++.... ....-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77777777778888887777776531 11111 235556666666666666666666665542110 00012445
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHH
Q 009143 264 STILMDSYFKNGD-KFQALALWNDMF 288 (542)
Q Consensus 264 ~~~l~~~~~~~g~-~~~a~~~~~~~~ 288 (542)
|..+...+.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555553 355555555543
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=7.6e-06 Score=75.98 Aligned_cols=172 Identities=14% Similarity=0.095 Sum_probs=134.2
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC-ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-C-ChhHHH
Q 009143 167 GDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-G-LLGDAV 243 (542)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g-~~~~a~ 243 (542)
+..++|+++++.++..+|. +..+|+.--..+...| .+++++++++.+..... -+..+|+.-...+.+. + +.++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 4456899999999998774 7788888888888888 59999999999998643 3667787777777666 6 889999
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC----
Q 009143 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF--------QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD---- 311 (542)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---- 311 (542)
++++++++.++ .+..+|+...-.+.+.|.++ ++++.++++.+.. +.|...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~dp----kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 146 EYIHGSLLPDP----KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHTSSCT----TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 99999999887 78888888777777777666 8888888888876 6688888888887777775
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009143 312 ---ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK 346 (542)
Q Consensus 312 ---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 346 (542)
++++++.+.++.... +-|...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 678888888877763 3456666666655555554
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=2.5e-06 Score=78.80 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 009143 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDV----ITSTILMDSYFKNGDKFQALALWNDMFQKNIQ-TD----IVAYN 300 (542)
Q Consensus 230 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 300 (542)
+..+...|++++|.+++++..+..... ++. ..+..+...+...|++++|...+++..+.... ++ ..+++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCC--hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 444555556666666555555533211 221 12223444444445555555555555542111 11 12345
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 009143 301 VLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 301 ~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
.+...|...|++++|+..|+++.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555555544
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=8.4e-07 Score=77.48 Aligned_cols=129 Identities=13% Similarity=-0.036 Sum_probs=71.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 009143 158 YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG 237 (542)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 237 (542)
.+...+...|++++|.+.|++.. .|+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444555555555555555442 2344555555555555555555555555554432 223445555555555556
Q ss_pred ChhHHHHHHHHHHhCCCCC------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 238 LLGDAVKFLGEVLADDDGK------------ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (542)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 291 (542)
++++|.+.++++++..+.. .+....++..+...+.+.|++++|...|++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666665555555544311 00233667777777777777777777777777653
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=4.6e-07 Score=71.66 Aligned_cols=93 Identities=16% Similarity=0.056 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 227 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
......+.+.|++++|++.|++.++..+ .+..+|..+..++.+.|++++|+..+++.++.+ +.+...|..+..++
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDP----ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3334444444444444444444444333 344444444444444444444444444444433 23344444444444
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 009143 307 CLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~ 324 (542)
...|++++|++.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 444444444444444444
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=8e-07 Score=73.95 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (542)
+..+...+...|++++|...+.+.+...+ .+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 33444444455555555555555544433 344445555555555555555555555544433 3344445555555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009143 306 FCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 306 ~~~~~~~~~A~~~~~~~~~~ 325 (542)
+...|++++|...|+++.+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=5.7e-07 Score=71.12 Aligned_cols=95 Identities=11% Similarity=0.009 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Q 009143 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (542)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (542)
+......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.++++++.++ .+..+|..+..+
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~lg~~ 90 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS----KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh----hhhHHHHHHHHH
Confidence 3344444444444444444444444331 22344444444444445555555555554444443 444445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009143 271 YFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~ 290 (542)
+...|++++|.+.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 55555555555555554443
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=2.2e-07 Score=75.94 Aligned_cols=94 Identities=16% Similarity=-0.017 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (542)
+..+...+.+.|++++|.+.|++++..+| .+...|..+..++...|++++|+..|++..+.. |.++..|..+..+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 33344444444444444444444444433 344444444444444444444444444444433 2233444444444
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 009143 306 FCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 306 ~~~~~~~~~A~~~~~~~~~ 324 (542)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=7.3e-07 Score=74.20 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (542)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++.+...+ .+..++..+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~ 89 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHHHHH
Confidence 34444555555555555555555554432 22345555555555556666666666665555544 44555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHH
Q 009143 270 SYFKNGDKFQALALWNDMFQKNIQTDIVAYNV--LINGFCLNGDISSAFAYFCQM 322 (542)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~A~~~~~~~ 322 (542)
.+...|++++|...+++..+.. +.+...+.. ++..+...|++++|++.+...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666655543 223333322 222244556666666655544
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=7.5e-07 Score=69.87 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=5.8
Q ss_pred HHHcCChhHHHHHHHH
Q 009143 163 LCKIGDLEKADHVIRE 178 (542)
Q Consensus 163 ~~~~g~~~~A~~~~~~ 178 (542)
+...|++++|.+.+++
T Consensus 19 ~~~~~~~~~A~~~~~~ 34 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQK 34 (125)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 3333333333333333
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.3e-06 Score=80.70 Aligned_cols=163 Identities=9% Similarity=-0.009 Sum_probs=67.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCH-----HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCC---CC--hHHHHH
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNC-----ATYNAFITGYCRVNELDKALHLFSTMANNGIR---PN--RVTHNI 228 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~~~~~ 228 (542)
.+..+...|++++|.+.+++..+..+.... ..+..+...+...|++++|+..+++..+.... +. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344445555555555555544443221110 11222333344445555555555554432100 01 224444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh---CCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHH
Q 009143 229 LVHALCKKGLLGDAVKFLGEVLA---DDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN----IQT-DIVAYN 300 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~ 300 (542)
+...|...|++++|...++++++ ..+........++..+...|.+.|++++|...+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555555555555555555441 1110000011344455555555555555555555443221 000 133444
Q ss_pred HHHHHHHhCCCHHHH-HHHHHH
Q 009143 301 VLINGFCLNGDISSA-FAYFCQ 321 (542)
Q Consensus 301 ~li~~~~~~~~~~~A-~~~~~~ 321 (542)
.+...|.+.|++++| ...+++
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 455555555555555 444443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.3e-06 Score=68.47 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
++..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333333333333333333333322 2233333333333444444444444443333
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=5.2e-07 Score=80.92 Aligned_cols=189 Identities=9% Similarity=-0.116 Sum_probs=100.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHHcCChhHHHHHHHHHhhCCCC-----CC----------
Q 009143 130 LGGKIGTALWLRRKMIQKGTVPDVLTHNYL-------VNELCKIGDLEKADHVIREMSEMRPS-----PN---------- 187 (542)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~-----~~---------- 187 (542)
+.++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-.+..|. -+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777653 2244566655 45555555555555544444431110 00
Q ss_pred -----HHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCc--
Q 009143 188 -----CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD-- 260 (542)
Q Consensus 188 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 260 (542)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+....... +.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d----~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPD----KFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSC----HHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCC----cccH
Confidence 1122334555666666666666666665432 3332444445556666666666666654433211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
..++..+..++...|++++|++.|++.......| ..........++.+.|+.++|...|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2355556666666666666666666665332213 2234455555666666666666666666655
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=4.3e-06 Score=77.16 Aligned_cols=169 Identities=10% Similarity=0.066 Sum_probs=115.5
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCCh------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCc--
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR------VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD-- 260 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 260 (542)
..+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+.+.+........+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44555677788999999999999888765322 21 2234455666778899999999988886543111122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC-CCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQ---KN-IQT--DIVAYNVLINGFCLNGDISSAFAYFCQMLKRG----FLP- 329 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~p- 329 (542)
..+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888888888888888888888762 21 111 12577788888888888888888888776431 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 009143 330 DVITYNTLLNCLCKQGKLDEA-SHFYGVLS 358 (542)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 358 (542)
-..+|..+...|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145677777788888888888 66566544
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=9.7e-07 Score=70.24 Aligned_cols=95 Identities=18% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
.+..+...+...|++++|.+.+++++...+ .+..++..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP----KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 334444444444444444444444444333 334444444444444444444444444444332 223344444444
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 009143 305 GFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~ 324 (542)
.+...|++++|.+.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=4.2e-07 Score=76.84 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=46.7
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCh--hHH
Q 009143 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA-LCKKGLL--GDA 242 (542)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~--~~a 242 (542)
.|++++|.+.+++..+..+ .+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3444444444444444332 233444444444444444444444444443321 1123333333333 3344443 444
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
...+++++...+ .+...+..+...+...|++++|...|+++.+
T Consensus 101 ~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS----NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444333 3333344444444444444444444444433
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=1.3e-06 Score=78.41 Aligned_cols=187 Identities=10% Similarity=-0.078 Sum_probs=122.5
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHhHHHH-------HHHHHHcCChhhHHHHHHHHHHCCCCCC---------------
Q 009143 165 KIGDLEKADHVIREMSEMRPSPNCATYNAF-------ITGYCRVNELDKALHLFSTMANNGIRPN--------------- 222 (542)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 222 (542)
..++.+.|.+.|.++.+..|. ....|..+ ...+.+.++..+++..+.+-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578999999999999987764 67788877 4666666666666666665443 2222
Q ss_pred -------hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009143 223 -------RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD 295 (542)
Q Consensus 223 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 295 (542)
......+...+...|++++|.++|..+...++ .+. ....+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p----~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS----EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC----HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 12233455667778888888888877766554 344 66666667777788888887777554321 111
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 296 --IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 296 --~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566677777777777777777777764322143 234555566667777777777777777764
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=7.8e-07 Score=70.44 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 227 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
..+...+...|++++|.+.+++++...+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELNP----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 3333444444444444444444443332 333344444444444444444444444444332 22333444444444
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 009143 307 CLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~ 324 (542)
...|++++|...|++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 444444444444444443
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=5.9e-07 Score=75.92 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=52.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCH--
Q 009143 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING-FCLNGDI-- 312 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~-- 312 (542)
.|++++|...+++.+...+ .+...+..+...+...|++++|...|++..+.. +.+...+..+... +...|++
T Consensus 23 ~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP----QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ----CCCCHHHHHHHHHCC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred ccCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 3444444444444444333 344444444444444444444444444444432 2234444444444 4444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 313 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
++|...++++.+.. +.+...+..+...+...|++++|...++...+
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555444432 12234444444445555555555555554444
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=7.9e-07 Score=70.78 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 009143 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (542)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (542)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+..+ .+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 344445555555555555555555544432 12334444444444444555555555444444332 1334444444444
Q ss_pred HHcCChhhHHHHHHHHHH
Q 009143 199 CRVNELDKALHLFSTMAN 216 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~ 216 (542)
.+.|++++|.+.|++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444433
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1.1e-07 Score=87.20 Aligned_cols=14 Identities=0% Similarity=-0.133 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHH
Q 009143 310 GDISSAFAYFCQML 323 (542)
Q Consensus 310 ~~~~~A~~~~~~~~ 323 (542)
|++++|++.+++..
T Consensus 149 ~~~~~A~~~~~~al 162 (281)
T 2c2l_A 149 AERERELEECQRNH 162 (281)
T ss_dssp HHHHHHHTTTSGGG
T ss_pred HHHHHHHHHHHhhh
Confidence 44444444444443
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=6e-07 Score=77.65 Aligned_cols=64 Identities=14% Similarity=-0.050 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 260 DVITSTILMDSYFKNGDKFQALALWNDMFQK----NI-QTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
...++..+...+...|++++|...+++..+. +. +....++..+...+...|++++|.+.+++..
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555555444431 00 1122334444445555555555555554443
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=1.1e-07 Score=77.72 Aligned_cols=101 Identities=8% Similarity=0.036 Sum_probs=80.8
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
.+...+..+...+.+.|++++|...|++..... |.+...|..+..++...|++++|+..|++..+.. +.++..|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 566678888888888888888888888888775 5677888888888888888888888888888764 33567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 009143 339 NCLCKQGKLDEASHFYGVLSKTG 361 (542)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~ 361 (542)
.+|...|++++|...|+...+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888888887753
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=4.8e-07 Score=78.29 Aligned_cols=97 Identities=10% Similarity=-0.110 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC--
Q 009143 262 ITSTILMDSYFKNGDKFQALALWNDMFQK----NIQ--TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG---FLPD-- 330 (542)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~p~-- 330 (542)
.++..+...+...|++++|.+.+++..+. +-. .....+..+...+...|++++|...+++..+.. -.+.
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34455555555555555555555544332 100 112334555555555666666666655544320 0111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 331 VITYNTLLNCLCKQGKLDEASHFYGVLS 358 (542)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (542)
..++..+...+...|++++|...+++..
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1224455555666666666666555443
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=3.9e-05 Score=70.89 Aligned_cols=166 Identities=8% Similarity=-0.014 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD----------KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
+|+++...++..+| .+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+...+
T Consensus 48 eaL~~t~~~L~~nP----~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 48 SVLELTSQILGANP----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHTTCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCc----hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 44555555555444 444444444333333222 345555555555443 344555555444444444
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--------
Q 009143 311 --DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK-LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH-------- 379 (542)
Q Consensus 311 --~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 379 (542)
.++++++++.++.+.. +-+...|+.-.-.+...|. ++++++.++.+.+..+ -|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 123 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC----
T ss_pred cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccccc
Confidence 2555555555555543 2244444444444444454 3555555555555432 2344444443333332
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009143 380 ------GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (542)
Q Consensus 380 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (542)
+.++++++.+.+.+...+. |...|+-+-..+.+.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAG 240 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSS
T ss_pred ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 3466777777777776655 667776554444443
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=4.6e-07 Score=74.03 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=53.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
.+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 344455555555555555555555555555443 3455555555555555555555555555555542 22344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009143 339 NCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~ 359 (542)
.++...|++++|...|+...+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555544
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=1.2e-06 Score=69.30 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHH
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 232 (542)
...+..+...+...|++++|.+.+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 33444455555555555555555555544333 234445555555555555555555555554431 2234444444555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (542)
+...|++++|.+.++++++..+ .+...+..+...+.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP----DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHh
Confidence 5555555555555555544443 33444444444444443
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=3.4e-05 Score=71.27 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=117.6
Q ss_pred HHhcCChH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC----------hhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 128 LCLGGKIG-TALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD----------LEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 128 ~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
..+.|.++ +|+.+++.++.... -+..+|+.--..+...|. ++++..+++.+....|+ +..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556655 78888888887632 244556654444443333 57788888888887764 7778887777
Q ss_pred HHHHcCC--hhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh
Q 009143 197 GYCRVNE--LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL-LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (542)
Q Consensus 197 ~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (542)
.+.+.++ +++++++++++.+... -|..+|+.-.-.+...|. ++++++.+.++++.++ .+..+|+.....+.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p----~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----SNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHH
Confidence 7777774 7888888888887643 367777777777777777 4788888888888777 778888777777666
Q ss_pred c--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 009143 274 N--------------GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (542)
Q Consensus 274 ~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (542)
. +.++++++.++...... |-|...|+-+-..+.+.
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5 33566666666666554 45556665444444433
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.2e-06 Score=82.51 Aligned_cols=123 Identities=10% Similarity=-0.083 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--------------HHhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 009143 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--------------CATYNAFITGYCRVNELDKALHLFSTMANNG 218 (542)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (542)
...+..+...|.+.|++++|...|++..+..+... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556666666666667777666666666444321 2444444444445555555555554444432
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 009143 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (542)
Q Consensus 219 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 280 (542)
+.+...+..+..++...|++++|...|+++++..+ .+..++..+..++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 12344444444444444444444444444444443 3444444444444444444444
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.6e-06 Score=81.80 Aligned_cols=151 Identities=15% Similarity=0.018 Sum_probs=92.9
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCC--------------hHHHHHHHHH
Q 009143 167 GDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN--------------RVTHNILVHA 232 (542)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~l~~~ 232 (542)
+++++|.+.++...+..+ .+...+..+...+.+.|++++|+..|++..+...... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 455566555544333222 2456778888888889999999999988877532111 3556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 312 (542)
+.+.|++++|+..++++++..+ .+..++..+..+|...|++++|...|++..+.. +.+...+..+...+...|+.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDS----NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666554 556666666666666666666666666666553 34455566666666666666
Q ss_pred HHH-HHHHHHHH
Q 009143 313 SSA-FAYFCQML 323 (542)
Q Consensus 313 ~~A-~~~~~~~~ 323 (542)
++| ...|+.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555 33444443
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=5.2e-07 Score=73.73 Aligned_cols=97 Identities=11% Similarity=-0.098 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
..+..+...+.+.|++++|...|++++...+ .+...|..+..++...|++++|...|++..... +.++..+..+.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH----YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 3444555556666666666666666665554 555566666666666666666666666665553 34455566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009143 304 NGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.++...|++++|...|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=3e-06 Score=66.84 Aligned_cols=95 Identities=16% Similarity=0.014 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
.+..+...+.+.|++++|...+++.++..+ .+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 344444445555555555555555555443 444555555555555555555555555555443 334445555555
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 009143 305 GFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 305 ~~~~~~~~~~A~~~~~~~~~ 324 (542)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=2e-07 Score=80.59 Aligned_cols=82 Identities=15% Similarity=-0.060 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (542)
.+..+..++.+.|++++|...+++++...+ .+..++..+..++...|++++|.+.|++..+.. +.+...+..+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 164 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHH
Confidence 344444444444555555555544444433 344444444444444455555544444444432 223334444444
Q ss_pred HHHhCCC
Q 009143 305 GFCLNGD 311 (542)
Q Consensus 305 ~~~~~~~ 311 (542)
++...++
T Consensus 165 ~~~~~~~ 171 (198)
T 2fbn_A 165 CVNKLKE 171 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333333
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=2.2e-07 Score=80.33 Aligned_cols=131 Identities=15% Similarity=0.045 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---------------HHhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 009143 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN---------------CATYNAFITGYCRVNELDKALHLFSTMANNG 218 (542)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (542)
..+..+...+.+.|++++|.+.|++..+..+... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445555556666666666666666655433211 2567777777888888888888888877652
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 009143 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL-ALWNDMFQ 289 (542)
Q Consensus 219 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 289 (542)
+.+...+..+..++...|++++|.+.++++++..+ .+..++..+..++...++.+++. ..+..+..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP----NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33567777788888888888888888888887765 66777777777777766666555 44444443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=3.3e-06 Score=66.76 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI--QTD----IVAY 299 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 299 (542)
+..+...+.+.|++++|++.|+++++..+ .+..+|..+..+|.+.|++++|++.+++.++... .++ ..+|
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34444555555555555555555555444 4445555555555555555555555555443210 001 1234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 300 NVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 300 ~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
..+..++...|++++|++.|++..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555555555555444
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=7.2e-06 Score=63.34 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 227 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
..+...+...|++++|.+.+++.+...+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDP----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3333444444444444444444444332 333444444444444444444444444444332 22333444444444
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 009143 307 CLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~ 324 (542)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444433
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=7.9e-06 Score=63.11 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 009143 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHAL 233 (542)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 233 (542)
..+..+...+...|++++|.+.+++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445555555555555555555555554433 244455555555555555555555555554432 12344445555555
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 009143 234 CKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~ 254 (542)
...|++++|.+.+++..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 555555555555555554443
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=3.3e-06 Score=68.35 Aligned_cols=92 Identities=17% Similarity=-0.045 Sum_probs=42.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009143 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (542)
Q Consensus 228 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (542)
.+...+.+.|++++|...|++++..++ .+...|..+..++...|++++|...|++....+ +.++..+..+..++.
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDH----YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 334444444444444444444444443 344444444444444444444444444444433 233344444444444
Q ss_pred hCCCHHHHHHHHHHHHH
Q 009143 308 LNGDISSAFAYFCQMLK 324 (542)
Q Consensus 308 ~~~~~~~A~~~~~~~~~ 324 (542)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45555555554444443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=2.4e-06 Score=69.15 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=73.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
.+...+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 455666677777778888888888888777665 5567777777777788888888888888777763 33556667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 009143 339 NCLCKQGKLDEASHFYGVLSKT 360 (542)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~ 360 (542)
.++...|++++|...|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777778888887777777654
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6e-06 Score=65.10 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH
Q 009143 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (542)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (542)
|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+..|. +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3444444444444444444444444432 113334444444444444444444444444443321 33344444444444
Q ss_pred cCChhhHHHHHHHHH
Q 009143 201 VNELDKALHLFSTMA 215 (542)
Q Consensus 201 ~g~~~~A~~~~~~m~ 215 (542)
.|++++|...|++..
T Consensus 85 ~~~~~~A~~~~~~al 99 (126)
T 3upv_A 85 VKEYASALETLDAAR 99 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHH
Confidence 444444444444443
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=3.9e-06 Score=66.34 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI--QTD----IVAY 299 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 299 (542)
+..+...+...|++++|...+++++...+ .+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34444444455555555555555544433 3444455555555555555555555555443320 011 3444
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 300 NVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 300 ~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
..+...+...|++++|.+.|+++.+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45555555555555555555555543
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=6.2e-06 Score=65.20 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF--LPD----VITY 334 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~p~----~~~~ 334 (542)
..++..++..+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|++.+++..+... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4566777888888888888888888877765 55677777888888888888888888877765421 111 1245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 335 NTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
..+..++...|++++|.+.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666667777777777766655
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=3.7e-06 Score=64.33 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 264 STILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
+..+...+...|++++|...+++..
T Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 43 WLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=9.3e-06 Score=64.94 Aligned_cols=95 Identities=15% Similarity=-0.010 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
..+..+...+...|++++|...+.+.+...+ .+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3344444444444444444444444444333 334444444444444444444444444444432 22344444444
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 009143 304 NGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~ 323 (542)
.++...|++++|...|++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 44444444444444444443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=8.4e-06 Score=67.74 Aligned_cols=97 Identities=11% Similarity=-0.048 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
..+..+...+.+.|++++|++.|++.++..+ .+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP----ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3444445555555555555555555555444 445555555555555555555555555555443 33455555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009143 304 NGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.++...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555555555555555555543
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=7.1e-06 Score=68.20 Aligned_cols=98 Identities=8% Similarity=0.022 Sum_probs=56.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (542)
+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.|++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455556666666666666666666665542 224555555666666666666666666666554432 4555555555
Q ss_pred HHHHcCChhhHHHHHHHHHH
Q 009143 197 GYCRVNELDKALHLFSTMAN 216 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~ 216 (542)
+|...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 56666666666666655554
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=7e-06 Score=62.76 Aligned_cols=100 Identities=11% Similarity=-0.095 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CCHHhHHHHH
Q 009143 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PNCATYNAFI 195 (542)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li 195 (542)
+...|..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34456666666667777777777777766653 224555666666666666666666666666665431 0355566666
Q ss_pred HHHHHc-CChhhHHHHHHHHHHC
Q 009143 196 TGYCRV-NELDKALHLFSTMANN 217 (542)
Q Consensus 196 ~~~~~~-g~~~~A~~~~~~m~~~ 217 (542)
.++.+. |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2e-05 Score=63.78 Aligned_cols=96 Identities=14% Similarity=-0.007 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHH
Q 009143 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPN----RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (542)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (542)
..+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|.+.+++.+...+ .+...+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~ 102 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----GDVKAL 102 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS----CCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc----cCHHHH
Confidence 34444444444444444444444444432 222 33344444444444444444444444444333 334444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44444444455555555554444443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.6e-05 Score=76.25 Aligned_cols=201 Identities=13% Similarity=0.039 Sum_probs=135.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-C
Q 009143 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPD----------------VLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-P 186 (542)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~ 186 (542)
-...+.+.|++++|++.|..+++...... ..++..++..|.+.|++++|.+.+..+...... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567888999999999999987532211 123677888999999999999988887653221 1
Q ss_pred CH----HhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--C
Q 009143 187 NC----ATYNAFITGYCRVNELDKALHLFSTMANN----GIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDD--G 255 (542)
Q Consensus 187 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 255 (542)
+. .+.+.+...+...|++++|..+++..... +..+. ..++..+...+...|++++|..++.++...-. .
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12333334444568888898888876542 22222 45677888888899999999988887765311 0
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 256 KATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQTD--IVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
..+....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11134567888888888888888888888876542 11111 24456666677777888888887777654
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=5.5e-06 Score=64.83 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=34.3
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC
Q 009143 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (542)
..+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++++..+ .+..++..+...+...|
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Confidence 33334444444444444443321 11333333344444444444444444444444333 33333334444444444
Q ss_pred CHHHHHHHHHHHH
Q 009143 276 DKFQALALWNDMF 288 (542)
Q Consensus 276 ~~~~a~~~~~~~~ 288 (542)
++++|...+++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444333
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.6e-05 Score=63.08 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD---VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 298 (542)
+...+..+...+...|++++|.+.+++.++..+ .+ ...+..+...+...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 344555556666666666666666666665443 22 4555556666666666666666666555543 334555
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 299 YNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 299 ~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
+..+..++...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555566666666666666655554
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=8e-05 Score=72.80 Aligned_cols=88 Identities=11% Similarity=0.005 Sum_probs=42.2
Q ss_pred ccccCChHHHHHHHHHHHh--CCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHc--CCCCC----hhHHHHHHH
Q 009143 451 SCNLGHIHLALQLYDEMLR--RGI--TPD-IITYTELIKGHCARGNMKEAEEVFAKIQTL--GLAID----HIPFRILKK 519 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~--~g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~----~~~~~~l~~ 519 (542)
+...|++++|..+++++.. .+. .|. ..+|..++..|...|++++|..++++.... ....+ ...+..++.
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 3344555555555554443 111 111 234555566666666666666666555431 11111 123444445
Q ss_pred HHHhcCChhHHHHHHHHHh
Q 009143 520 RYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~l 538 (542)
.+...|++++|...|.+++
T Consensus 225 ~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 5555666666666665554
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=1.1e-05 Score=64.58 Aligned_cols=98 Identities=10% Similarity=-0.049 Sum_probs=50.6
Q ss_pred CHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHH
Q 009143 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (542)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (542)
+...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++++...+ .+..++..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG----QSVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----hhHHHHHH
Confidence 34444455555555555555555555544432 22344455555555555555555555555555444 44555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009143 267 LMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 267 l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
+..++...|++++|...|++..+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555543
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=8e-06 Score=64.46 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCc----HHHHH
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD----VITST 265 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ 265 (542)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++++...+ ...++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-ccchhHHHHHHHHH
Confidence 34444444455555555555555544432 22344444555555555555555555555544332 00011 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009143 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302 (542)
Q Consensus 266 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (542)
.+...+...|++++|.+.|++..+.. |+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 66666666666666666666666542 344444333
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=5.5e-05 Score=59.57 Aligned_cols=94 Identities=17% Similarity=0.064 Sum_probs=42.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 009143 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD---IVAYNVLINGF 306 (542)
Q Consensus 230 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 306 (542)
...+...|++++|.+.++++++..+ ..+....++..+..++.+.|++++|...|++..+.. +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 3344444555555555555444333 100111344444455555555555555555544432 112 33444444555
Q ss_pred HhCCCHHHHHHHHHHHHHc
Q 009143 307 CLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 307 ~~~~~~~~A~~~~~~~~~~ 325 (542)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=1.8e-05 Score=61.90 Aligned_cols=96 Identities=10% Similarity=0.028 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 235 (542)
+..+...+.+.|++++|...|++..+..| .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34445555555666666666665555443 245555555555556666666666665555532 1234455555555555
Q ss_pred cCChhHHHHHHHHHHhCC
Q 009143 236 KGLLGDAVKFLGEVLADD 253 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~ 253 (542)
.|++++|...++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666665555543
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=6.3e-05 Score=59.19 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=43.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--HHhHHHHHHH
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDV---LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--CATYNAFITG 197 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~ 197 (542)
.+...+.+.|++++|+..|+...+... .+. ..+..+...+.+.|++++|...|+++.+..|... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344444555555555555555554321 111 2444445555555555555555555544333210 3334444444
Q ss_pred HHHcCChhhHHHHHHHHHH
Q 009143 198 YCRVNELDKALHLFSTMAN 216 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~ 216 (542)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=3.5e-05 Score=63.74 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.+..+|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|...|++..+.
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 344567777777777777777777777777664 456667777777777777777777777777665
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.5e-05 Score=65.53 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCC-CC----hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CCCcHH
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANNGIR-PN----RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK--ATSDVI 262 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 262 (542)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++.+...... ......
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555544332100 01 1234445555555555555555555544321100 001123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44445555555555555555555443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=6.7e-06 Score=63.88 Aligned_cols=60 Identities=12% Similarity=-0.010 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
.+..+...+...|++++|.+.++++++..+ .+..++..+..++...|++++|...+++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFP----NHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444444444444333 333444444444444444444444444443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.6e-05 Score=65.38 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCCCcHH
Q 009143 190 TYNAFITGYCRVNELDKALHLFSTMANN----GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVI 262 (542)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~ 262 (542)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|.+.+++.+..... .......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555555566666666666666554432 1000 1345566667777777777777777766543110 0002234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666777777777777777766553
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=4e-05 Score=73.04 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
.+..+|..+..+|.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|++.|+++.+.. +.+...+..+.
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344566666666666666666666666666554 3455666666666666666666666666666552 22344444445
Q ss_pred HHHHhcCCHHHH
Q 009143 339 NCLCKQGKLDEA 350 (542)
Q Consensus 339 ~~~~~~g~~~~A 350 (542)
..+...++.+++
T Consensus 349 ~~~~~~~~~~~a 360 (370)
T 1ihg_A 349 KVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444444
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=3.2e-05 Score=76.20 Aligned_cols=88 Identities=10% Similarity=-0.085 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 224 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
..|..+..++.+.|++++|+..++++++..+ .+..+|..+..+|...|++++|...|++..+.. +.+...+..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4455555555555555555555555555544 455555555555555555555555555555543 33445555555
Q ss_pred HHHHhCCCHHHHH
Q 009143 304 NGFCLNGDISSAF 316 (542)
Q Consensus 304 ~~~~~~~~~~~A~ 316 (542)
.++.+.++.+++.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=4.2e-05 Score=75.30 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 340 (542)
..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5677888888888888888888888888765 5567788888888888888888888888887763 2345667777777
Q ss_pred HHhcCCHHHHHH-HHHHHH
Q 009143 341 LCKQGKLDEASH-FYGVLS 358 (542)
Q Consensus 341 ~~~~g~~~~A~~-~~~~~~ 358 (542)
+.+.++.+++.+ ++..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777776653 444443
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=1.2e-05 Score=62.42 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=66.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009143 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS 314 (542)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 314 (542)
..|++++|+..++++++.+. ..+.+..++..+...+...|++++|...|++..+.. +.+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHH
Confidence 35778888888888887641 111567788888888888899999999888888775 5567788888888888888888
Q ss_pred HHHHHHHHHHc
Q 009143 315 AFAYFCQMLKR 325 (542)
Q Consensus 315 A~~~~~~~~~~ 325 (542)
|+..|++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888765
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.2e-05 Score=79.69 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=70.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 311 (542)
.+.+.|++++|.+.++++++..+ .+..++..+..++.+.|++++|.+.+++..+.. +.+..+|..+..+|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456666666666666666554 556666666777777777777777777666654 4456666666777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 009143 312 ISSAFAYFCQMLKRGFLPDVITYNTLLNC--LCKQGKLDEASHFYG 355 (542)
Q Consensus 312 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 355 (542)
+++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777766652 1123334444444 566677777777666
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=5e-05 Score=72.37 Aligned_cols=121 Identities=12% Similarity=-0.088 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHC---------------CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 009143 191 YNAFITGYCRVNELDKALHLFSTMANN---------------GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG 255 (542)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 255 (542)
+..+...+.+.|++++|++.|++..+. --+.+..+|..+..++.+.|++++|++.++++++..+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 444445555555555555555554430 0112346677788888888888888888888888766
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009143 256 KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (542)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 316 (542)
.+..++..+..+|...|++++|.+.|++..+.. +.+...+..+...+...++.+++.
T Consensus 305 ---~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 ---SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888887764 446666777776666666665554
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00026 Score=71.41 Aligned_cols=171 Identities=11% Similarity=0.026 Sum_probs=128.9
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC----------hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC
Q 009143 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD----------LEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (542)
Q Consensus 133 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (542)
..++|++.++.++.... -+..+|+.-...+.+.|+ ++++.+.++.+.+..|+ +..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34677899999888642 255677777777777776 88999999999888774 7888888888888888
Q ss_pred --ChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhc-----
Q 009143 203 --ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN----- 274 (542)
Q Consensus 203 --~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 274 (542)
+++++++.++++.+.... +..+|+....++.+.| .++++.+.+.++++.++ .+..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p----~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----CCHHHHHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----CCccHHHHHHHHHHhhccccc
Confidence 669999999999886533 7778888777778888 78888899888888777 7888888888777764
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009143 275 ---------GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (542)
Q Consensus 275 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 311 (542)
+.++++++.+++..... +-|...|..+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 44577777777776654 4566666666666655555
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=1.2e-05 Score=79.68 Aligned_cols=118 Identities=14% Similarity=0.035 Sum_probs=67.1
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC
Q 009143 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (542)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (542)
.+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|.+.++++++..+ .+..++..+..+|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCC
Confidence 3445566666666666665542 22355566666666666666666666666666554 556666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLING--FCLNGDISSAFAYFC 320 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~ 320 (542)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666666543 2233444444444 566667777777666
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.00035 Score=70.41 Aligned_cols=172 Identities=8% Similarity=-0.012 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD----------KFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (542)
++|.+.+++++...+ .+..+|+.-...+...|+ ++++++.++.+.+.. +-+..+|+.-...+.+.
T Consensus 46 eeal~~~~~~l~~nP----~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 46 ESVLELTSQILGANP----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp HHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCc----hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 355666666666555 555666666665555555 666666666666654 45666666666666666
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-------
Q 009143 310 G--DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG-KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH------- 379 (542)
Q Consensus 310 ~--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 379 (542)
+ +++++++.++++.+.. +-+...|+.-..++.+.| .++++.+.++.+.+.. +-+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 6 5567777777766654 235555665555566666 6666666666666653 22455555555554442
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 009143 380 -------GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN 419 (542)
Q Consensus 380 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 419 (542)
+.++++++.+.+++...+. |...|+.+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578999999999987765 88899988888888777544
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=0.0001 Score=60.85 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (542)
Q Consensus 223 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 291 (542)
...|..+..++.+.|++++|+..+++++..++ .+..+|..+..++...|++++|...|++.....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE----TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 35666677777777777777777777777665 667777777777777777777777777777653
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=0.00011 Score=59.35 Aligned_cols=98 Identities=11% Similarity=-0.039 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---CCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 009143 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKA---TSD-----VITSTILMDSYFKNGDKFQALALWNDMFQK------- 290 (542)
Q Consensus 226 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 290 (542)
+......+.+.|++++|...|++.++..+... ..+ ...|+.+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34444555556666666666666665544100 001 226666666666666666666666666554
Q ss_pred CCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 291 NIQTDIVAY----NVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 291 ~~~~~~~~~----~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
+ +-+...| .....++...|++++|+..|++..+
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2334445 5555555566666666666655543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=2.1e-05 Score=74.02 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.|..+..++.+.|++++|+..+++++...+ .+..+|..+..+|...|++++|...|++..+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE----KNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444 44555555555555555555555555555443
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=0.00016 Score=58.42 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLAD-------DDGKATSDVITS----TILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.|..+..++.+.|++++|+..+++.++. ++ .+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p----d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ----DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS----THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC----chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666677777777777777777777765 65 677777 88888888888888888888888753
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=3.8e-05 Score=72.32 Aligned_cols=128 Identities=12% Similarity=0.004 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH------------------HhHHHHHHHHHHcCChhhHHHHHHHHHHC
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNC------------------ATYNAFITGYCRVNELDKALHLFSTMANN 217 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (542)
+..+...+.+.|++++|...|++..+..+ +. ..|..+..+|.+.|++++|+..+++..+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555556666666666666554332 21 37888888999999999999999998875
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 009143 218 GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS-YFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 218 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 290 (542)
. +.+...|..+..++...|++++|.+.|+++++..+ .+..++..+... ....+..+.+...|..|...
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p----~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP----DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3 33678888999999999999999999999988776 555666666655 33445667777777777654
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=8.3e-05 Score=73.17 Aligned_cols=126 Identities=5% Similarity=-0.090 Sum_probs=66.2
Q ss_pred HHHcCChhhHHHHHHHHHHC--C-CCC----ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCCCcHHHHH
Q 009143 198 YCRVNELDKALHLFSTMANN--G-IRP----NRVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVITST 265 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~--g-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~ 265 (542)
+...|++++|+.++++..+. . +.| ...+++.|..+|...|++++|+.++++.+.. |+ ..+....+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 34567777777777665432 0 111 1345666666777777777777666665542 22 1112334566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009143 266 ILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (542)
Q Consensus 266 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 324 (542)
.|...|...|++++|..++++..+. | .+....+.+.+..++...+.+++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555431 1 111122334444455555555555555555543
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00087 Score=53.47 Aligned_cols=10 Identities=20% Similarity=0.570 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 009143 312 ISSAFAYFCQ 321 (542)
Q Consensus 312 ~~~A~~~~~~ 321 (542)
+++|++.|++
T Consensus 77 ~~~A~~~~~~ 86 (138)
T 1klx_A 77 LRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.77 E-value=0.00017 Score=55.46 Aligned_cols=79 Identities=19% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009143 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFC 320 (542)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 320 (542)
.|.+.+++.++..+ .+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|+
T Consensus 3 ~a~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGT----DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555444 445555555555555555555555555555543 3344555555555555555555555555
Q ss_pred HHHH
Q 009143 321 QMLK 324 (542)
Q Consensus 321 ~~~~ 324 (542)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00022 Score=70.17 Aligned_cols=91 Identities=14% Similarity=0.015 Sum_probs=47.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHH
Q 009143 233 LCKKGLLGDAVKFLGEVLADDDG----KATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYNV 301 (542)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 301 (542)
+...|++++|+.++++.++.... ..+....+++.|...|...|++++|..++++.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666665543110 11122345666666666666666666666555431 1 1112344555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 009143 302 LINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~ 323 (542)
|...|...|++++|..++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5556666666666666555544
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.0014 Score=52.29 Aligned_cols=83 Identities=7% Similarity=-0.056 Sum_probs=37.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 009143 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR----C 414 (542)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 414 (542)
..+..++|.++|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ ++..+..|...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3334444444444444432 33334444444443 344555555555544442 34444444444444 4
Q ss_pred CChHHHHHHHHHHHhCC
Q 009143 415 GDLSNAFSIRDLMLSFG 431 (542)
Q Consensus 415 g~~~~A~~~~~~m~~~~ 431 (542)
+++++|...|++..+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 55555555555554443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00022 Score=54.82 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=26.7
Q ss_pred ccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 451 SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 29 YAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555432 11334455555555555555555555555544
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=4.4e-05 Score=58.24 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 262 ITSTILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
.++..+..++.+.|++++|.+.+++..
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00049 Score=49.92 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=5.0
Q ss_pred HHhCCCHHHHHHHH
Q 009143 306 FCLNGDISSAFAYF 319 (542)
Q Consensus 306 ~~~~~~~~~A~~~~ 319 (542)
+...|++++|...+
T Consensus 53 ~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 53 YYKQGDYDEAIEYY 66 (91)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 33333333333333
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00061 Score=49.41 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=22.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009143 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLA 251 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 251 (542)
.+...+...|++++|+..+++..+.. +.+...+..+...+.+.|++++|.+.+++.+.
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333334444444444444333321 11233333333344444444444444444433
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=0.0002 Score=57.74 Aligned_cols=96 Identities=14% Similarity=0.075 Sum_probs=48.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009143 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK----------FQALALWNDMFQKNIQTDIVAYNVLINGF 306 (542)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (542)
+.+++|.+.++..++..+ .+...|+.+..++...+++ ++|+..|++.++.+ +.+..+|..+..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 344445555555555444 4444555555544444432 35555555555443 33444555555555
Q ss_pred HhC-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009143 307 CLN-----------GDISSAFAYFCQMLKRGFLPDVITYNTLLN 339 (542)
Q Consensus 307 ~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 339 (542)
... |++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 444 3666777777766665 455544444333
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00037 Score=52.84 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------HH
Q 009143 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-------VI 332 (542)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~-------~~ 332 (542)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 45667777778888888888888888877764 456777778888888888888888888887765 333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHH
Q 009143 333 TYNTLLNCLCKQGKLDEASH 352 (542)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~ 352 (542)
.+..+..++...|+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 44444555555554444433
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.00069 Score=50.48 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=26.0
Q ss_pred ccccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 451 SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
+...|++++|+..|++.++.. +.+...|..+..+|...|++++|.+.+++..+
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444455555555555555432 11234455555555555555555555555443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.36 E-value=0.00056 Score=55.15 Aligned_cols=108 Identities=11% Similarity=0.072 Sum_probs=68.2
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 009143 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243 (542)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 243 (542)
.+.+.+++|.+.++...+..| .+...|..+..++...++++.+...++ .+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHH
Confidence 344555666666666655554 255555555555555555443333221 256788
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009143 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNG-----------DKFQALALWNDMFQKNIQTDIVAYNVLI 303 (542)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (542)
..|++.++.++ ....+|..+..+|...| ++++|++.|++.++. .|+...|...+
T Consensus 67 ~~le~AL~ldP----~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 67 TKFEEALLIDP----KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHhCc----CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888776 67778888888887764 788888888888876 45554444333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0017 Score=48.27 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
+..++..+...+.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444444433 2233344444444444444444444444443
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0015 Score=63.08 Aligned_cols=87 Identities=8% Similarity=-0.026 Sum_probs=66.3
Q ss_pred cCChHHHHHHHHHHHh---CCCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhH-----cCC-CCC-hhHHHHHHH
Q 009143 454 LGHIHLALQLYDEMLR---RGIT---PD-IITYTELIKGHCARGNMKEAEEVFAKIQT-----LGL-AID-HIPFRILKK 519 (542)
Q Consensus 454 ~g~~~~A~~~~~~~~~---~g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~~l~~ 519 (542)
.|++++|+.++++.++ .-+. |+ ..+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4788888888887765 1122 23 26788999999999999999999998764 232 122 356888999
Q ss_pred HHHhcCChhHHHHHHHHHhhc
Q 009143 520 RYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~l~~ 540 (542)
.|..+|++++|..+++++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.02 E-value=0.011 Score=54.73 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 334 (542)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 555666666666666666666666666666664 55666666666666666666666666666665 4554444
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.0094 Score=55.28 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 293 QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (542)
Q Consensus 293 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (542)
+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555555555555566666666666665553 4555555555555556666666666655555
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0061 Score=58.91 Aligned_cols=61 Identities=8% Similarity=-0.157 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhH-----cCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 009143 478 TYTELIKGHCARGNMKEAEEVFAKIQT-----LGL-AID-HIPFRILKKRYRRMKESDKARDIHQKWL 538 (542)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l 538 (542)
+++.++.+|...|++++|..++++... .|. .|+ ..+++.|...|..+|++++|..++++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444555555555555555555554432 111 111 2234445555555555555555555554
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.83 E-value=0.0092 Score=43.45 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 457 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
.++|..++++.++.. +-++.....+...+.+.|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 577777777777752 224566667777777788888888888777775
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.82 E-value=0.0029 Score=46.72 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=25.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVI-TSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.+.+.|++++|.+.++++++..+ .+.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEP----VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCS----STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444444444444444444433 3334 4444444444444555554444444443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.76 E-value=0.0046 Score=59.72 Aligned_cols=87 Identities=7% Similarity=-0.111 Sum_probs=41.5
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHH
Q 009143 236 KGLLGDAVKFLGEVLAD-----DDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYNVLI 303 (542)
Q Consensus 236 ~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li 303 (542)
.|++++|+.++++.++. |+ ..+....+++.|...|...|++++|..++++.++. | .+....+++.|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34556666666555442 11 11112344555555555555555555555554431 1 111223455555
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 009143 304 NGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 304 ~~~~~~~~~~~A~~~~~~~~ 323 (542)
..|...|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 55555555555555555443
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.02 Score=55.30 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=41.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHH
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKAT----SDVITSTILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYN 300 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 300 (542)
.+.+.|++++|+.++++.++....... ....+++.++..|...|++++|+.++++.++. | .+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344455555555555555543211111 12234555555555555555555555544321 1 111223344
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 009143 301 VLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 301 ~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
.|...|...|++++|..++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555555555555555554443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.70 E-value=0.016 Score=42.14 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 221 PNRVTHNILVHALCKKGL---LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (542)
Q Consensus 221 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 291 (542)
.+...+..+..++...++ .++|..++++.++.++ .++.+...+...+.+.|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555555544433 5666667777666665 666666666666667777777777777666653
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.66 E-value=0.26 Score=43.85 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCh
Q 009143 347 LDEASHFYGVLSKTGVAPD---QISYKTIIQGLCIH-----GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-GDL 417 (542)
Q Consensus 347 ~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 417 (542)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.++|++.++.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666663 344 44677777777773 78888888888887766543466777777777774 778
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHH
Q 009143 418 SNAFSIRDLMLSFGVS--SNVFTFNA 441 (542)
Q Consensus 418 ~~A~~~~~~m~~~~~~--p~~~~~~~ 441 (542)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888887776554 55444333
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.009 Score=43.90 Aligned_cols=77 Identities=18% Similarity=0.065 Sum_probs=56.8
Q ss_pred ccccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhH
Q 009143 451 SCNLGHIHLALQLYDEMLRRGITPDII-TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDK 529 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 529 (542)
+...|++++|.+.++++.+.. +.+.. .|..+..+|...|++++|.+.|++..+.... +...+.. +.+.+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~~~~~ 79 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------KMVMD 79 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------HHHHH
Confidence 667899999999999999853 22456 8889999999999999999999999986432 3333311 44555
Q ss_pred HHHHHHHH
Q 009143 530 ARDIHQKW 537 (542)
Q Consensus 530 A~~~~~~~ 537 (542)
+...|++.
T Consensus 80 a~~~~~~~ 87 (99)
T 2kc7_A 80 ILNFYNKD 87 (99)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHHH
Confidence 56555554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.013 Score=46.64 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhHcCCCC--ChhHHHHHHHHHHhcCChhHH
Q 009143 456 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARG---NMKEAEEVFAKIQTLGLAI--DHIPFRILKKRYRRMKESDKA 530 (542)
Q Consensus 456 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A 530 (542)
.+..+.+-|.+....|. ++..+.-.+.+++++.+ +.++++.++++..+.. .| ....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555555443 45666666666666666 4446666666666643 12 234444555566677777777
Q ss_pred HHHHHHHhhc
Q 009143 531 RDIHQKWLLR 540 (542)
Q Consensus 531 ~~~~~~~l~~ 540 (542)
.++++++|+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777766554
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.44 E-value=0.11 Score=55.02 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Q 009143 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (542)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (542)
..++..+.+.|.+++|+++.+. .. .-.......|++++|.++.+.+ .+...|..+...+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~---------~~~~~W~~la~~a 691 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE---------SAEMKWRALGDAS 691 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC---------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh---------CcHhHHHHHHHHH
Confidence 5566666666776666655421 10 1123345567777777665332 4566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009143 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (542)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 323 (542)
.+.|+++.|.+.|..+.+ |..+...+...|+.+...++-+...
T Consensus 692 l~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 692 LQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777776542 2333444444555554444433333
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.27 E-value=0.11 Score=55.14 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHc
Q 009143 122 VAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (542)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (542)
..++..+.+.|.++.|+++.+.. ..-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 55556666666666666544211 11123345567777775554332 3456677777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 009143 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (542)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 281 (542)
++++.|.+.|.++.. |..+...+...|+.+...++.+.....+. ++.....|.+.|++++|.
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---------~~~A~~~~~~~g~~~~a~ 756 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK---------FNLAFNAYWIAGDIQGAK 756 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---------hHHHHHHHHHcCCHHHHH
Confidence 777777777766542 23344444445555555544444444332 222233344455555555
Q ss_pred HHHHH
Q 009143 282 ALWND 286 (542)
Q Consensus 282 ~~~~~ 286 (542)
+++.+
T Consensus 757 ~~~~~ 761 (814)
T 3mkq_A 757 DLLIK 761 (814)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.23 E-value=0.03 Score=41.69 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=37.5
Q ss_pred ccccCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 009143 451 SCNLGHIHLALQLYDEMLRRG------ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (542)
+...|+++.|...+++..+.- -.+....+..|..++.+.|++++|...++++.+.
T Consensus 15 ~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 556677777777777766520 1234466777777777777777777777777765
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.18 Score=41.21 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=53.1
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhH
Q 009143 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD 241 (542)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 241 (542)
...+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344556666666655544 2455666666666666666666666655432 2233334445555555
Q ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 242 AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (542)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 286 (542)
..++-+.....+. ++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5554444444332 33334445555666666665543
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.10 E-value=0.12 Score=40.56 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=25.7
Q ss_pred CChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
+++++|.++|+.+.+.+-.- ...|......-.+.|+++.|.+++...+..++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 45555555555554432111 44444444444555555555555555555444
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.00 E-value=0.043 Score=43.63 Aligned_cols=81 Identities=15% Similarity=0.039 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC---ChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHHcCChhhHHHH
Q 009143 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG---DLEKADHVIREMSEMR-PSPNCATYNAFITGYCRVNELDKALHL 210 (542)
Q Consensus 135 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (542)
..+.+-|.+..+.|. ++..+...+.-++++.+ +.++++.+|+++.+.. |..+...+-.+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344445555544443 46666666666666665 4456666666666644 211234444455556666777777776
Q ss_pred HHHHHH
Q 009143 211 FSTMAN 216 (542)
Q Consensus 211 ~~~m~~ 216 (542)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.71 E-value=0.093 Score=46.66 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-CCHH
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN-GDIS 313 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~ 313 (542)
..|...++++++.++.- .+-..|..+...|.+ .|+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleLDP~~--~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLWPSY--QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHCTTH--HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhCCCc--ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 45566666666665411 245566677766766 367777777777777664222356666666666664 6777
Q ss_pred HHHHHHHHHHHcCCC
Q 009143 314 SAFAYFCQMLKRGFL 328 (542)
Q Consensus 314 ~A~~~~~~~~~~~~~ 328 (542)
++.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777777765443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.69 E-value=0.15 Score=37.77 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
++..|..++.+.|+++.|...+++..
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.36 E-value=0.21 Score=39.20 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhcccccccCChHHHHHHHHHHHh
Q 009143 400 EPHIWNVIIDGYGRCGDL------SNAFSIRDLMLSFGVSSNV----FTFNALILAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 400 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
|..+|-..+....+.|++ ++..++|++.... ++|+. ..|.-+.--|+. +...+++++|.++|+.+++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~--~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAE--LKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHH--HHHHHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH
Confidence 666777777777777777 7777777777663 44432 112222211211 2334899999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHH
Q 009143 470 RGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 521 (542)
Q Consensus 470 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 521 (542)
..-.- ...|.....--.++|+...|.+++.+....+.+ +...+...+.-+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 42233 667777777777899999999999999998765 444555555444
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.80 E-value=1 Score=34.59 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=27.5
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCC
Q 009143 453 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 507 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 507 (542)
..|.-++-.++...+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus 103 ~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 335555555555554321 244555555555555555555555555555555554
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.73 E-value=1.4 Score=35.90 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=50.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009143 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (542)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (542)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445556666666655544 2455566666666666666666666554332 223333444455555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009143 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLS 391 (542)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 391 (542)
...++-+.....| -++.....+...|+++++.+++.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444443333332 133333444445666666555543
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.55 E-value=0.19 Score=38.40 Aligned_cols=66 Identities=15% Similarity=-0.023 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhHcCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 009143 474 PDIITYTELIKGHCARGNMKE---AEEVFAKIQTLGLA-IDHIPFRILKKRYRRMKESDKARDIHQKWLL 539 (542)
Q Consensus 474 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 539 (542)
|+..+--.+.+++.+..+..+ ++.++++....+.+ -.....-.|.-++.+.|++++|.++++.+|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444333 44444444433200 0122222333344455555555555554443
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.52 E-value=2.6e-05 Score=73.60 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (542)
.|..|..+..+.|++.+|++-|-+. -|+..|..++....+.|.+++-++.+....+..-.| ..=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 3444555555555444444332111 133344445555555555555544444333322112 22234445555
Q ss_pred HcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 009143 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFL 246 (542)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 246 (542)
+.++..+-.+++. .||..-...+.+-|...|.++.|.-+|
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 5544443332221 133333444444444444444444333
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.20 E-value=0.18 Score=38.45 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=28.9
Q ss_pred CChhhHHHHHHHHHHcCChhH---HHHHHHHHhhCC-CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 009143 151 PDVLTHNYLVNELCKIGDLEK---ADHVIREMSEMR-PSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (542)
|+..+-..+.-++.+...... ++.+++++.+.+ |.......-.|.-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444443333 445555544432 111222233334444455555555555555544
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.16 E-value=6.7 Score=41.33 Aligned_cols=87 Identities=14% Similarity=-0.062 Sum_probs=36.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCCh
Q 009143 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHI 457 (542)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~ 457 (542)
-.|+.+....++..+.+.. .-+..-.-.+.-++...|+.+.+..+.+.+... ..|....-.++..+| +|+..|+.
T Consensus 502 GTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~algl---AyaGTGn~ 576 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIAL---AYAGTGNN 576 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHH---HTTTSCCH
T ss_pred ccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHH---HhcCCCCH
Confidence 4455544455555444421 111111222222333455555555555555542 122222222222222 25555665
Q ss_pred HHHHHHHHHHHh
Q 009143 458 HLALQLYDEMLR 469 (542)
Q Consensus 458 ~~A~~~~~~~~~ 469 (542)
....++++.+.+
T Consensus 577 ~aIq~LL~~~~~ 588 (963)
T 4ady_A 577 SAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 555555555554
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.03 E-value=1 Score=42.60 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK-----RGFLPDVIT 333 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 333 (542)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445566666777777776666666554 55666777777777777777777777766543 366666544
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.58 E-value=1.9 Score=33.11 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009143 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF 327 (542)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 327 (542)
.......++.....|.-++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444555666666777777777777754332 56677777777777777777777777777777664
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.30 E-value=9.5 Score=40.23 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=8.0
Q ss_pred HHHcCChhHHHHHHHHH
Q 009143 163 LCKIGDLEKADHVIREM 179 (542)
Q Consensus 163 ~~~~g~~~~A~~~~~~~ 179 (542)
....|+.+++..++...
T Consensus 384 lIh~g~~~~gl~~L~~y 400 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPY 400 (963)
T ss_dssp HHTSSCTTTHHHHHTTT
T ss_pred hhccCchHHHHHHHHHh
Confidence 34445555554444443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.89 E-value=1.1 Score=46.03 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=79.3
Q ss_pred HHHHHHcCC-hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC-ChhhHHHHHHHHHHC------CCCCCh--------
Q 009143 160 VNELCKIGD-LEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANN------GIRPNR-------- 223 (542)
Q Consensus 160 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~-------- 223 (542)
+..+...|+ .+.|..+|+++.+..+..+......++..+.+.+ +--+|.+++.+..+. ...+..
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 333333555 5789999999888665333222233333333332 223455555444321 112111
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009143 224 ---VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (542)
Q Consensus 224 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 288 (542)
.....-.+.+...|+++.|+++-++.....| .+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP----seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL----DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc----hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234556678999999999999998776 888999999999999999999998888763
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=4.5 Score=39.00 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH----Hhc
Q 009143 275 GDKFQALALWNDMFQK-----NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-GFLPDVITYNTLLNCL----CKQ 344 (542)
Q Consensus 275 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~----~~~ 344 (542)
|++++|++.+-.+.+. +..........++..|...++++...+.+..+... |..+ .....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 6677777766555432 33445666777777888888888777766655443 2222 2222333222 222
Q ss_pred CCHHHHHH--HHHHHHH--CC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 009143 345 GKLDEASH--FYGVLSK--TG-VAP---DQISYKTIIQGLCIHGDIVKAREFLLSMLEK--SVVPE---PHIWNVIIDGY 411 (542)
Q Consensus 345 g~~~~A~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~li~~~ 411 (542)
...+.... +.+.... .| +-. .......|...|...|++.+|.+++..+... +.... ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222111 1111100 00 001 0112244555666667777777766666431 11111 23455555666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 009143 412 GRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~ 429 (542)
...+++.+|..++.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666655
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.81 E-value=0.13 Score=49.15 Aligned_cols=229 Identities=14% Similarity=0.082 Sum_probs=144.2
Q ss_pred HHHHHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 009143 100 RLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREM 179 (542)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (542)
++.+..+++. -..|+..|..+|.+..+.|++++-+..+.-..+.. -++..=+.|+-+|++.+++.+- ++.
T Consensus 69 ~v~eAIdsyI----kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~el----Eef 138 (624)
T 3lvg_A 69 MVKEAIDSYI----KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL----EEF 138 (624)
T ss_dssp SCTTTTTSSC----CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTT----TST
T ss_pred chHHHHHHHH----hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHH----HHH
Confidence 4445555543 13477789999999999999999998887666552 3555667899999999998776 333
Q ss_pred hhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCC--------------------CCCChHHHHHHHHHHHhcCCh
Q 009143 180 SEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG--------------------IRPNRVTHNILVHALCKKGLL 239 (542)
Q Consensus 180 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~l~~~~~~~g~~ 239 (542)
+ -.||..-...+.+-|...|.++.|.-+|..+.... ---++.||..+-.+|...+++
T Consensus 139 l---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 139 I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp T---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTT
T ss_pred H---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHH
Confidence 3 23566666777888888888888777775542210 122567888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009143 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYF 319 (542)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 319 (542)
..|.-.--.++-... . ...++..|-..|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+.+
T Consensus 216 rLAqicGLniIvhad-e-------L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 216 RLAQMCGLHIVVHAD-E-------LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp TTTTHHHHHHHCCSS-C-------CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred HHHHHhcchhcccHH-H-------HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 777665555543322 1 1234556677777777777777766433 45666777776666654 445544444
Q ss_pred HHHHHcCCCC-------CHHHHHHHHHHHHhcCCHHHHH
Q 009143 320 CQMLKRGFLP-------DVITYNTLLNCLCKQGKLDEAS 351 (542)
Q Consensus 320 ~~~~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~ 351 (542)
+....+=-.| ....|.-++-.|.+-.++|.|.
T Consensus 286 klf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 286 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 4322210011 2233555555566555555543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.69 E-value=12 Score=35.91 Aligned_cols=175 Identities=10% Similarity=0.066 Sum_probs=96.1
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHH----HHcCChhHH--HHHHHHHhh---C
Q 009143 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-GTVPDVLTHNYLVNEL----CKIGDLEKA--DHVIREMSE---M 182 (542)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~----~~~g~~~~A--~~~~~~~~~---~ 182 (542)
+..........++..+...|+++...+.+..+.+. |..+. ....+++.+ ......+.. ..+.+.... .
T Consensus 51 d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ 128 (445)
T 4b4t_P 51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTEN 128 (445)
T ss_dssp STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSC
T ss_pred chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 34455667788888888999998887777766654 32222 223333322 223332221 111111111 0
Q ss_pred CCCC---CHHhHHHHHHHHHHcCChhhHHHHHHHHHHC--CCCCC---hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 183 RPSP---NCATYNAFITGYCRVNELDKALHLFSTMANN--GIRPN---RVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 183 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
..-. .......|...+...|++.+|.+++..+... |.... ...+...++.|...+++..|..++.++.....
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 0001 1123355677788888888888888877532 21111 24556667777788888888777776532100
Q ss_pred -CCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 255 -GKATSD--VITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 255 -~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
...+++ ...+...+..+...+++.+|.+.|.++.+
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 010022 24556666777777777777777666653
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.54 E-value=3.1 Score=31.87 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 472 ITPDIITYTELIKGHCARGNM---KEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 472 ~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
-.|+..+--.+.+++.+..+. .+++.++++..+.+..-....+--|.-++.+.|++++|.++.+.+|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345666655666777765554 356777777666542223444555666777777777777777777654
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.53 E-value=1.1 Score=42.49 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 009143 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ-----KNIQTDIVAY 299 (542)
Q Consensus 225 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 299 (542)
+...++..+...|+.+++...+..+...++ .+...+..+|.++.+.|+..+|++.|+...+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P----~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP----YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345567788899999999999999998887 8889999999999999999999999988754 3888887653
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.09 E-value=1.9 Score=44.32 Aligned_cols=125 Identities=14% Similarity=0.069 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCC-hhhHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcC-ChhHHHHHHHHHHhC-------CCCCCCCc
Q 009143 192 NAFITGYCRVNE-LDKALHLFSTMANNGIRPNRVTHN--ILVHALCKKG-LLGDAVKFLGEVLAD-------DDGKATSD 260 (542)
Q Consensus 192 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g-~~~~a~~~~~~~~~~-------~~~~~~~~ 260 (542)
..++..+...++ .+.|..+++++... .|...++. .++..+.+.+ +--+|.+++.+.++. -. . .+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~-~--~~ 326 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP-P--RD 326 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS-S--CC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc-c--cc
Confidence 444555555566 58899999999875 34433322 2333333333 223466666655431 11 1 11
Q ss_pred HH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009143 261 VI----------TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQM 322 (542)
Q Consensus 261 ~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 322 (542)
.. ....=.+-+...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11 12222344567899999999999998874 567899999999999999999999998876
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.59 E-value=6.1 Score=30.72 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 009143 473 TPDIITYTELIKGHCARGNMK---EAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 540 (542)
Q Consensus 473 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 540 (542)
.|+..+--.+.+++.+..+.+ +++.++++....+..-.....-.|.-++.+.|++++|.++.+.+|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555666666655443 46666666665432223334444555667777777777777776654
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.65 E-value=9.2 Score=42.05 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009143 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTL 337 (542)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 337 (542)
.-|..++..+-+.+.++.+.+.-....+...+.+. ..|..+.+++...|++++|...+-.+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 45666777777777777777666665543211111 2466677777777777777777766665432 23455556
Q ss_pred HHHHHhcCCHHH
Q 009143 338 LNCLCKQGKLDE 349 (542)
Q Consensus 338 i~~~~~~g~~~~ 349 (542)
+...|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 666665555444
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.69 E-value=16 Score=33.24 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009143 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (542)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 443 (542)
-|+.....+...|.+.+++.+|...|- . +-.+.+..+..++.-+...+...++ +...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH
Confidence 456677778888888889888887773 2 3233335665555444444432222 223333334
Q ss_pred HHhhcccccccCChHHHHHHHHHHHh
Q 009143 444 LAETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 444 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
. |...+++..|..+++...+
T Consensus 196 ~------yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 P------YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H------HHHTTCHHHHHHHHHHHHH
T ss_pred H------HHHhCCHHHHHHHHHHHHH
Confidence 3 4445788888887766553
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.01 E-value=20 Score=33.62 Aligned_cols=92 Identities=16% Similarity=-0.014 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHH--
Q 009143 336 TLLNCLCKQGKLDEASHFYGVLSKTGVAPD-----QISYKTIIQGLCIHGDIVKAREFLLSMLEK--SVVPEPHIWNV-- 406 (542)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-- 406 (542)
.++..|...|++.+|.+++..+.+.=-..| ..++..-++.|...+++.++...+...... .+.+++..-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 455566666666666666655544211111 123444445556666666666666555432 11123322111
Q ss_pred --HHHHHH-hcCChHHHHHHHHHH
Q 009143 407 --IIDGYG-RCGDLSNAFSIRDLM 427 (542)
Q Consensus 407 --li~~~~-~~g~~~~A~~~~~~m 427 (542)
-+..+. ..++|..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 122334 566666666665554
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.96 E-value=4.1 Score=29.36 Aligned_cols=64 Identities=3% Similarity=0.041 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHH
Q 009143 456 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR 520 (542)
Q Consensus 456 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 520 (542)
+.-+..+-++.+....+.|++....+.+++|.+.+++.-|.++++-.+.. ..+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 44556666677777778889988888999999999999999998887764 22334556666543
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.23 E-value=19 Score=32.51 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009143 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC---GDLSNAFSIRDLMLSFGVSSNVFTFNA 441 (542)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ 441 (542)
++.....+...|.+.|++.+|...|-. +-.-+...+..++.-+... |...++--..- .+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HH
Confidence 566777888888888888888876642 1111344555555444444 54444322222 22
Q ss_pred HHHHhhcccccccCChHHHHHHHHHHH
Q 009143 442 LILAETRGASCNLGHIHLALQLYDEML 468 (542)
Q Consensus 442 ll~~~~~~~~~~~g~~~~A~~~~~~~~ 468 (542)
++. |...|++..|..+++...
T Consensus 195 VL~------yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VFN------YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH------HHHTTBHHHHHHHHHHHH
T ss_pred HHH------HHHhcCHHHHHHHHHHHH
Confidence 232 334588888888888765
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.89 E-value=7.8 Score=29.69 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCChhhHHHHHHHHHHcCCh---hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 009143 150 VPDVLTHNYLVNELCKIGDL---EKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (542)
Q Consensus 150 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (542)
.|+..+-....-++.+..+. .+++.+++++.+.++......+-.|.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444332 34555555555444322333444445555555555555555555554
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.69 E-value=24 Score=33.16 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 009143 228 ILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQK--NIQTDIVAYNVL- 302 (542)
Q Consensus 228 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 302 (542)
.++..|...|++.+|.+++.++.+.-.. ....-..++..-+..|...+++..+...+...... .+.+++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4667777777777777777666653110 00123445666677777788888877777766432 222333322211
Q ss_pred ---HHHHH-hCCCHHHHHHHHHHHH
Q 009143 303 ---INGFC-LNGDISSAFAYFCQML 323 (542)
Q Consensus 303 ---i~~~~-~~~~~~~A~~~~~~~~ 323 (542)
.-.+. ..+++.+|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22345 6778888777776654
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.29 E-value=8.6 Score=27.75 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 325 (542)
.-+..+-++.+...++.|++....+.+++|.+.+++..|.++|+-.+.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666666666666666665544
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.11 E-value=19 Score=39.48 Aligned_cols=89 Identities=19% Similarity=0.136 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 009143 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYK 370 (542)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 370 (542)
-..-|..++..+-+.+.++.+.++-....+.....+. ..|..+.+++...|++++|...+-.+..... -.....
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr 975 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLL 975 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHH
Confidence 3455788888999999999999888877765322221 2578889999999999999999988776543 356778
Q ss_pred HHHHHHHhcCCHHHH
Q 009143 371 TIIQGLCIHGDIVKA 385 (542)
Q Consensus 371 ~li~~~~~~g~~~~A 385 (542)
.++..+|..|..+.-
T Consensus 976 ~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHCCHHHH
T ss_pred HHHHHHHhCCChhhh
Confidence 888888877765443
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.51 E-value=8.2 Score=30.93 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG-TVPDV-------LTHNYLVNELCKIGDLEKADHVIREMSE 181 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 181 (542)
++-.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++.++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556677778888888887777755431 22332 2556777888889999999888888643
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.22 E-value=10 Score=27.20 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 009143 132 GKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLF 211 (542)
Q Consensus 132 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (542)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+.+ +.||...|-.|-.. +.|--+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 445666666666665532 1111112223355678888886655544 46777777666554 567777777777
Q ss_pred HHHHHCC
Q 009143 212 STMANNG 218 (542)
Q Consensus 212 ~~m~~~g 218 (542)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6666554
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.16 E-value=26 Score=31.59 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHH
Q 009143 222 NRVTHNILVHALCKKGLLGDAVKFL 246 (542)
Q Consensus 222 ~~~~~~~l~~~~~~~g~~~~a~~~~ 246 (542)
++.....+...|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4444555555555555555555444
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.28 E-value=15 Score=28.16 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009143 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (542)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 338 (542)
.-+..+-++.+...++.|++....+.+++|.+.+++..|.++|+-.+.+ +.+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3355556666666677777777777777777777777777777766654 233344455444
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.95 E-value=7.8 Score=37.11 Aligned_cols=59 Identities=14% Similarity=-0.070 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009143 369 YKTIIQGLCIHGDIVKAREFLLSMLEKS--VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (542)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (542)
...+...|.+.|++++|.+.+.++.... ...-...+-.++..+...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444444444444444444444321 1112233444444455555555555554444
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.94 E-value=45 Score=33.51 Aligned_cols=116 Identities=11% Similarity=-0.034 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccC
Q 009143 380 GDIVKAREFLLSMLEKSVVPEPHIWNV----IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLG 455 (542)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g 455 (542)
.+.+.|..++....+... .+...... +...+...+...++...+..........+...|..-. ..+.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-------Alr~~ 299 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-------ALGTG 299 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-------HHHHT
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-------HHHCC
Confidence 367788888877764332 23332222 2222333443455666666654432222222232221 22457
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 009143 456 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 504 (542)
Q Consensus 456 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (542)
+++.|...|+.|..... ....-.--+.+++...|+.++|..+|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888877765311 1233334556677777888888888877754
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.59 E-value=6.4 Score=31.54 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCCH-------HhHHHHHHHHHHcCChhhHHHHHHHH
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMR-PSPNC-------ATYNAFITGYCRVNELDKALHLFSTM 214 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 214 (542)
+..-+..+...|.++.|+-+...+.... ..|+. .++..+.+++...|++..|...|++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344455555666666655544433211 11221 13344455555556666666666554
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.00 E-value=19 Score=34.34 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHH
Q 009143 155 THNYLVNELCKIGDLEKADHVIREMSEM--RPSPNCATYNAFITGYCRVNELDKALHLFSTMA 215 (542)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (542)
+...+...|.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5566777778888888888888777653 222334566667777777778777777777764
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.64 E-value=33 Score=29.98 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=72.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccccc
Q 009143 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG--VSSNVFTFNALILAETRGASC 452 (542)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~ 452 (542)
.+.+.|++++|++.+..-++..+. |...-..++..+|-.|++++|.+-++...+.. ..|...+|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 455678888888888887777665 77777888888888888888888777776632 12233455555543
Q ss_pred ccCChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHhHc
Q 009143 453 NLGHIHLALQLYDEMLRRGITP-----DIITYTELIKGHC--ARGNMKEAEEVFAKIQTL 505 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~g~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 505 (542)
+..=.+...-+-.| ...-...++.+.. ..|+.++|.++-+++.+.
T Consensus 78 --------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 --------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333322222 1223345555554 479999999988888663
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.18 E-value=21 Score=27.37 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009143 312 ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQ 374 (542)
Q Consensus 312 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 374 (542)
.-+..+-+..+...++.|++....+.+++|.+.+++..|.++|+-++.. ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555666666667777777777777777777777777777766543 2333445665553
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.48 E-value=21 Score=29.68 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCC
Q 009143 432 VSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 510 (542)
Q Consensus 432 ~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (542)
..-|..-....+.-. . ++..+...++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 73 YkND~RYLklWl~Ya-~--~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYI-N--LFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHH-H--HHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHH-H--hhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 445555555555421 0 1113446677778887777655433 35566677777777888888888877777666654
Q ss_pred h
Q 009143 511 H 511 (542)
Q Consensus 511 ~ 511 (542)
.
T Consensus 150 ~ 150 (202)
T 3esl_A 150 N 150 (202)
T ss_dssp H
T ss_pred H
Confidence 3
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.98 E-value=47 Score=30.25 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRK 143 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~ 143 (542)
.|-++..-|.+++++++|++++-.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345555666666777777665443
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.55 E-value=26 Score=27.19 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 364 PDQISYKTIIQGLCIHGD---IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 364 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
|+..+--.+.-++.++.+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.+..+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444443 334555555555433322233344445556666666666666666655
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.29 E-value=72 Score=32.08 Aligned_cols=335 Identities=10% Similarity=0.005 Sum_probs=163.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 009143 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (542)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 236 (542)
..-+..+.+.+++......+. . ++.+...-.....+....|+..+|....+.+=..| .........++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSP----E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC----S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhcc----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 344555666777666544332 2 22355555556677777888777777776665444 23455667777777777
Q ss_pred CChhH--HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------------
Q 009143 237 GLLGD--AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV------------- 301 (542)
Q Consensus 237 g~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------- 301 (542)
|.+.. ..+=++.+...+. ...-..++... . .+.....+.+..+... +++......
T Consensus 150 g~lt~~~~~~R~~~al~~~~------~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~ 219 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGN------TGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAA 219 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTC------HHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC------HHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHH
Confidence 76544 2233333333332 11111111111 0 1111112222233322 233322111
Q ss_pred -HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009143 302 -LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCL----CKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGL 376 (542)
Q Consensus 302 -li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 376 (542)
.+.-+. ..+.+.|...+....+.. ..+......+-... ...+...++...+....... .+.....-.+...
T Consensus 220 ~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~A 295 (618)
T 1qsa_A 220 VAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHH
Confidence 111122 236778888887776543 22333322222222 23342455666666554432 3333334444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCC
Q 009143 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGH 456 (542)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~ 456 (542)
.+.|+++.|...|..|...... .....--+..++...|+.++|..+|+.+.+. . +|-.++.+- +.|.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa~------~Lg~ 362 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAAQ------RIGE 362 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHHH------HTTC
T ss_pred HHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHHH------HcCC
Confidence 5678888888888887653222 3333444566777888888888888888752 2 233333321 1121
Q ss_pred hHHHHHHHHHHHhCCCCCC---HHH---HHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCChhHH
Q 009143 457 IHLALQLYDEMLRRGITPD---IIT---YTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKA 530 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 530 (542)
.-.. ....+.+. ... -..-+..+...|....|...+..+... .+......+.......|..+.+
T Consensus 363 ~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 363 EYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp CCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHH
Confidence 0000 00000010 000 112344566788888888877776653 2333333444555566776666
Q ss_pred HHHH
Q 009143 531 RDIH 534 (542)
Q Consensus 531 ~~~~ 534 (542)
+...
T Consensus 433 v~~~ 436 (618)
T 1qsa_A 433 VQAT 436 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.52 E-value=13 Score=32.62 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
...+.|+++++++....-++..| .|...-..|++.+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P----~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP----KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566777777777777777666 67777777777777777777777777666654
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.97 E-value=38 Score=28.13 Aligned_cols=54 Identities=7% Similarity=-0.064 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009143 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT 294 (542)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (542)
..++..+|..|...+.+. .....|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGT--KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555554433 455555555555555555555555555555554333
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.04 E-value=34 Score=24.57 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009143 346 KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRD 425 (542)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (542)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.. +.||...|-+|.. .+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655432 2222223334556667777776655433 3566666655543 45666666666665
Q ss_pred HHHhCCCCCCHHHHHH
Q 009143 426 LMLSFGVSSNVFTFNA 441 (542)
Q Consensus 426 ~m~~~~~~p~~~~~~~ 441 (542)
++..+| .|....|..
T Consensus 93 ~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 93 GLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHTCS-SHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
Confidence 665554 444444433
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.18 E-value=36 Score=24.51 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009143 346 KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRD 425 (542)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (542)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.. +.||...|-+|.. .+.|-.+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655442 2222223334556677777777665443 3567666665543 35566666666665
Q ss_pred HHHhCCCCCCHHHHHH
Q 009143 426 LMLSFGVSSNVFTFNA 441 (542)
Q Consensus 426 ~m~~~~~~p~~~~~~~ 441 (542)
++..+| .|....|..
T Consensus 94 ~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 94 RLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHTTCC-CHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
Confidence 655544 444444433
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.67 E-value=38 Score=24.32 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 009143 132 GKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLF 211 (542)
Q Consensus 132 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (542)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+.+ +.||...|-.|-.. +.|--+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 345666666666665532 1111112223356678888885554433 56787777666554 677777777777
Q ss_pred HHHHHCC
Q 009143 212 STMANNG 218 (542)
Q Consensus 212 ~~m~~~g 218 (542)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6776654
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.42 E-value=22 Score=31.10 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=19.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHH
Q 009143 343 KQGKLDEASHFYGVLSKTGVAPDQIS--YKTIIQGLCIHGDIVKARE 387 (542)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~ 387 (542)
..+.......+.+.+.+.|..++... -.+.+...++.|+.+-+..
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 34444444455555555555443321 1122333445566544333
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.84 E-value=38 Score=26.68 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=13.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.....|......+...|++.+|.++|+.-++.
T Consensus 99 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 99 LSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33344444444444444444444444444433
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.44 E-value=68 Score=25.21 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009143 385 AREFLLSMLEKSVVP-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (542)
Q Consensus 385 A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 434 (542)
+.++|..|..+++-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666666555432 23445555666666666666666666666655555
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.26 E-value=25 Score=29.84 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHh--HHHHHHHHHH
Q 009143 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLT--HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT--YNAFITGYCR 200 (542)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~ 200 (542)
+...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445567887777777776666655444321 11233444556665544 33444444332211 1122333445
Q ss_pred cCChhhHHHHHHH
Q 009143 201 VNELDKALHLFST 213 (542)
Q Consensus 201 ~g~~~~A~~~~~~ 213 (542)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5555544444433
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.01 E-value=88 Score=25.74 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=8.6
Q ss_pred CCHHhHHHHHHHHHHcCC
Q 009143 186 PNCATYNAFITGYCRVNE 203 (542)
Q Consensus 186 ~~~~~~~~li~~~~~~g~ 203 (542)
++...-...+..+.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444555555554
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.05 E-value=46 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=13.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009143 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (542)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 290 (542)
.....|......+-..|++.+|.++|+.-++.
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33334444444444444444444444444443
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.94 E-value=19 Score=30.55 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=7.1
Q ss_pred HHHHHHHcCChhHH
Q 009143 159 LVNELCKIGDLEKA 172 (542)
Q Consensus 159 li~~~~~~g~~~~A 172 (542)
.+...+..|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 45 LLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 34444555665544
No 282
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=50.47 E-value=1.3e+02 Score=26.18 Aligned_cols=38 Identities=8% Similarity=-0.178 Sum_probs=17.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009143 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (542)
Q Consensus 303 i~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 340 (542)
+...-+.+++++..+..+++.+.+...+..-.+.|-.+
T Consensus 38 AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvA 75 (261)
T 3ubw_A 38 AKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVA 75 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 34444455555555555555554444444433333333
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.04 E-value=1.2e+02 Score=25.94 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=42.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009143 303 INGFCLNGDISSAFAYFCQMLKR--GFLP----DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGL 376 (542)
Q Consensus 303 i~~~~~~~~~~~A~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 376 (542)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 34555566666666666554432 1111 111222223332333333334444444422 34455566666777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009143 377 CIHGDIVKAREFLLSML 393 (542)
Q Consensus 377 ~~~g~~~~A~~~~~~~~ 393 (542)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777765543
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.67 E-value=51 Score=29.04 Aligned_cols=141 Identities=8% Similarity=-0.008 Sum_probs=57.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHHcCC
Q 009143 127 DLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC---ATYNAFITGYCRVNE 203 (542)
Q Consensus 127 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~ 203 (542)
..+..|+.+-+..+ ++.|..++...-.+.+...+..|+.+-+ +.+.+.|..++. .-++ .+...+..|+
T Consensus 37 ~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~ 107 (285)
T 3kea_A 37 YAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT-ALYYAVDSGN 107 (285)
T ss_dssp HHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc-HHHHHHHcCC
Confidence 34456666544433 3444444332222334444556666554 333334443322 1222 2333445566
Q ss_pred hhhHHHHHHHHHHCCCCCChH---HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 009143 204 LDKALHLFSTMANNGIRPNRV---THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (542)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 280 (542)
.+-+.-+++ .|..++.. .+.+.+...+..|+.+-+. .+++.+... .+...-.+.+...+..|+.+-+
T Consensus 108 ~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~--~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 108 MQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPST--FDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp HHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTT--CCCSTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCcc--ccccCCccHHHHHHHcChHHHH
Confidence 544443333 34333321 1123344445555544333 333333211 1111223334444555665555
Q ss_pred HHHHHH
Q 009143 281 LALWND 286 (542)
Q Consensus 281 ~~~~~~ 286 (542)
.-+++.
T Consensus 178 ~~Ll~~ 183 (285)
T 3kea_A 178 ILLLDY 183 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 555444
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.00 E-value=1e+02 Score=24.63 Aligned_cols=51 Identities=6% Similarity=-0.004 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009143 385 AREFLLSMLEKSVVP-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (542)
Q Consensus 385 A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (542)
+.++|..|..+++-. -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 445566665555432 234455555556666666666666666666555553
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.79 E-value=1.4e+02 Score=27.42 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKMI 145 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~ 145 (542)
....+|.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 35667888888899999998888865
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.73 E-value=46 Score=28.14 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCCh
Q 009143 457 IHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH 511 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 511 (542)
.+++..+|..|...|+--.. ..|......+...|++++|.++|+.-++.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 35778899999987766543 56778888888899999999999998887766643
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.31 E-value=36 Score=29.65 Aligned_cols=46 Identities=4% Similarity=-0.010 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 009143 455 GHIHLALQLYDEMLRRGITPDIIT--YTELIKGHCARGNMKEAEEVFA 500 (542)
Q Consensus 455 g~~~~A~~~~~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 500 (542)
|......++++.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 443334455555666655544321 1122333445566555444443
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.68 E-value=1.3e+02 Score=27.73 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 009143 369 YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD--LSNAFSIRDLMLSFGVSS 434 (542)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 434 (542)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 345566666677777777777776532111 23334444555554332 344556666666655443
No 290
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.50 E-value=1.3e+02 Score=26.90 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCCh
Q 009143 463 LYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH 511 (542)
Q Consensus 463 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 511 (542)
+.+.+++.|..+|..+ .+..-++.|+.+ +++.+.+.|-.||.
T Consensus 288 iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 288 IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 4444566676666543 222334556554 33445566665553
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.44 E-value=61 Score=27.39 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009143 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (542)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 291 (542)
....+|..|...+.+. .....|......+...|++.+|.++|+.-++.+
T Consensus 132 ~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQ--ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcch--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444444444433 444455555555555555555555555544443
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.26 E-value=91 Score=27.34 Aligned_cols=14 Identities=0% Similarity=-0.266 Sum_probs=7.0
Q ss_pred HHHHHcCChhHHHH
Q 009143 161 NELCKIGDLEKADH 174 (542)
Q Consensus 161 ~~~~~~g~~~~A~~ 174 (542)
...+..|+.+-+..
T Consensus 36 ~~A~~~g~~~~v~~ 49 (285)
T 3kea_A 36 YYAIADNNVRLVCT 49 (285)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 33445566655533
No 293
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=43.15 E-value=1.6e+02 Score=25.32 Aligned_cols=51 Identities=8% Similarity=-0.227 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHh---CCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHH
Q 009143 418 SNAFSIRDLMLS---FGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEML 468 (542)
Q Consensus 418 ~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~ 468 (542)
+.|.+.|+...+ ..++|+......+.--++.-.|--.+++++|.++-++..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455554432 235665554444443333222444567777666655443
No 294
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=42.67 E-value=1.6e+02 Score=25.13 Aligned_cols=56 Identities=11% Similarity=-0.052 Sum_probs=26.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK-QGKLDEASHFYGVL 357 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 357 (542)
++...-+.+++++..+..+.+.+.+...+..-.+.|-.+|-. .|....+++++..+
T Consensus 14 ~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissi 70 (236)
T 3iqu_A 14 KAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSI 70 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 344445556666666666655555555554444444444322 23333444444433
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.49 E-value=84 Score=24.35 Aligned_cols=62 Identities=5% Similarity=0.014 Sum_probs=45.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 465 DEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 465 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345668888776543 44555666677788999999998887777888877788888877754
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.05 E-value=1.6e+02 Score=25.08 Aligned_cols=88 Identities=10% Similarity=-0.021 Sum_probs=50.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009143 124 VIRDLCLGGKIGTALWLRRKMIQK--GTVP----DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (542)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (542)
-+..+....++++|+.++++..+. +.++ ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 456777889999999888876643 2221 1122222333333333333344444444 22 3455556667788
Q ss_pred HHHcCChhhHHHHHHHH
Q 009143 198 YCRVNELDKALHLFSTM 214 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m 214 (542)
+.+.|+.++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888887554
No 297
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.06 E-value=73 Score=21.56 Aligned_cols=61 Identities=8% Similarity=0.178 Sum_probs=42.7
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 466 EMLRRGITPDIITYTELIKGHCARG-NMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 466 ~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-.
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 45567777776553 4455555554 5667888888888876667888888888888877754
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.95 E-value=39 Score=27.55 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=4.4
Q ss_pred HHHHHHHHcCC
Q 009143 317 AYFCQMLKRGF 327 (542)
Q Consensus 317 ~~~~~~~~~~~ 327 (542)
++.+.+.+.|.
T Consensus 159 ~~v~~Ll~~ga 169 (201)
T 3hra_A 159 DIVKLLMENGA 169 (201)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 33334444443
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.53 E-value=89 Score=28.54 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 009143 227 NILVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 227 ~~l~~~~~~~g~~~~a~~~~~~~ 249 (542)
..++.-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44555555566666665555554
No 300
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.15 E-value=92 Score=24.32 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=43.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 465 DEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 465 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345567877665443 45566666677888999999998877777888877777888877754
No 301
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.61 E-value=83 Score=24.03 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=42.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 466 EMLRRGITPDIITYTELIKGHCARG-NMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 466 ~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35567777776543 3455555555 6778999999998887777877777777777777654
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.37 E-value=79 Score=25.14 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=49.8
Q ss_pred hHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc--CCCCChhHHHHHHHHHHhcCCh
Q 009143 457 IHLALQLYDEM-LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL--GLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 457 ~~~A~~~~~~~-~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
.+.+++-+.+. .+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555544 44788877644 35566777777888999999999887 7777877777777788877754
No 303
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.95 E-value=1.7e+02 Score=23.86 Aligned_cols=154 Identities=14% Similarity=0.038 Sum_probs=68.5
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHH
Q 009143 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (542)
Q Consensus 151 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 230 (542)
++...-...+..+.+.|..+ +...+..+.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34455555555555555533 3333333332 234444455555565555533 3333333332 24555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009143 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310 (542)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (542)
.++.+.++.+ +...+.+++. . ++..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++.+.+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~----d--~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK----D--EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT----C--SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcHH-HHHHHHHHHh----C--CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 6666655533 2333333332 1 44444444555555555432 2333333332 234444444445555444
Q ss_pred CHHHHHHHHHHHHH
Q 009143 311 DISSAFAYFCQMLK 324 (542)
Q Consensus 311 ~~~~A~~~~~~~~~ 324 (542)
. .++...+..+.+
T Consensus 172 ~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 172 G-ERVRAAMEKLAE 184 (211)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHh
Confidence 4 334444444433
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.25 E-value=23 Score=30.68 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=31.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhh-------HHHHHHHHH--HcCChhHHHHHHHHH
Q 009143 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLT-------HNYLVNELC--KIGDLEKADHVIREM 179 (542)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~A~~~~~~~ 179 (542)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|..+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344567888877777777777665554332 233333322 457766666555543
No 305
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=35.64 E-value=2.2e+02 Score=24.71 Aligned_cols=59 Identities=5% Similarity=-0.003 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH
Q 009143 265 TILMDSYFKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLN-GDISSAFAYFCQML 323 (542)
Q Consensus 265 ~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~ 323 (542)
..++...-+.++++++...+.++.+.+ ...+..--+.|-.+|-.. |....+++++..+.
T Consensus 12 v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 12 VYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 344555556666666666666666655 455555555555554322 33344455544443
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.63 E-value=1.5e+02 Score=23.50 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=33.6
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-HhhcccccccCChHHHHHHHHHHHh
Q 009143 414 CGDLSNAFSIRDLMLSFGVSS--NVFTFNALIL-AETRGASCNLGHIHLALQLYDEMLR 469 (542)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~-~~~~~~~~~~g~~~~A~~~~~~~~~ 469 (542)
.|++-+|-++|+..-.....| +...|..+|. ........+.|+...|..++++...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777766543344 4455566665 3222224456777777777777765
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.36 E-value=74 Score=24.69 Aligned_cols=61 Identities=5% Similarity=0.048 Sum_probs=42.8
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 465 DEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 465 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345567888776543 3444555556 678999999998887777887777777777777654
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.88 E-value=3.7e+02 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHH
Q 009143 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (542)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (542)
...+|-.+.++|.+++|.++.++.... ...-...|..++..|+.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 556777788999999998888766432 11112355566666653
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.22 E-value=1.9e+02 Score=24.26 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 457 IHLALQLYDEMLRRGITPDII-------TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 457 ~~~A~~~~~~~~~~g~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
++.|+.+|+.+.+.-.-|+.. .-...+-.|.+.|.+++|.+++++.... .++..-...-+-...+..+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccCc
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.05 E-value=3.4e+02 Score=26.42 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=47.2
Q ss_pred HHhHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCCCh--HHHH-HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009143 188 CATYNAFITGYCRVNELDKALHLFSTMANNG-IRPNR--VTHN-ILVHALCKKGLLGDAVKFLGEVLADDD 254 (542)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~--~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~ 254 (542)
...+|.+++.|...+.++.|..+..+..--- ..++. .+|. .+.+.+.-.+++.+|.+.+..+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5678899999999999999999998874110 01111 2222 345667778899999999888887554
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.98 E-value=1.4e+02 Score=26.80 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 404 WNVIIDGYGRCGDLSNAFSIRDLML 428 (542)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~ 428 (542)
...++.-|...|+.++|.+.++++.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4556667777788888888887775
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.64 E-value=1.6e+02 Score=22.64 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=24.3
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC
Q 009143 144 MIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (542)
Q Consensus 144 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (542)
+.+.|..++.. -..+++.+...+..-.|.++++.+.+.++..+..|.---+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444443332 22333333344444455555555554444434433333333333333
No 313
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.55 E-value=1.9e+02 Score=24.03 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=9.0
Q ss_pred HHcCChhhHHHHHHHHHHCC
Q 009143 199 CRVNELDKALHLFSTMANNG 218 (542)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g 218 (542)
++.|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455444444444444333
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.12 E-value=1.4e+02 Score=23.05 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHhhCCCCCCHHh
Q 009143 169 LEKADHVIREMSEMRPSPNCAT 190 (542)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~~~ 190 (542)
.-.|.++++.+.+.++..+..|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~T 54 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINIST 54 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhH
Confidence 4445555555544444333333
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.07 E-value=2.1e+02 Score=23.66 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=29.9
Q ss_pred hHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 009143 120 RHVAVIRDLC---LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG 167 (542)
Q Consensus 120 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 167 (542)
.+.-+|+++. +..+++.|+-.+-+|++.| .|....-..++-+.-.-|
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4455666665 4588999999999999998 554444344444443334
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.39 E-value=3.6e+02 Score=26.23 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 009143 120 RHVAVIRDLCLGGKIGTALWLRRKM 144 (542)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m 144 (542)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4555555555555555555555544
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.33 E-value=96 Score=24.21 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHcCCCCChhHHHHHHHHHHhcCCh
Q 009143 465 DEMLRRGITPDIITYTELIKGHCARG-NMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 527 (542)
Q Consensus 465 ~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 527 (542)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667877776543 3445555555 6677999999998877777777777777777777754
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.52 E-value=1.6e+02 Score=22.29 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=9.1
Q ss_pred ChhHHHHHHHHHhhCCCCCCH
Q 009143 168 DLEKADHVIREMSEMRPSPNC 188 (542)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~ 188 (542)
..-.|.++++.+.+.++..+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~ 53 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGL 53 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCH
T ss_pred CCCCHHHHHHHHHhhCCCCCH
Confidence 344444444444444433333
No 319
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=31.04 E-value=92 Score=21.07 Aligned_cols=40 Identities=5% Similarity=-0.074 Sum_probs=27.5
Q ss_pred HHHhhCCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 009143 103 TMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMI 145 (542)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 145 (542)
.+...+| +++|++.||+-+...+-+..-..++..+.+++-
T Consensus 24 ~LL~kIP---nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIP---NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSS---SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHhhCC---CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4455666 888999999988776665555566666655543
No 320
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=30.51 E-value=52 Score=15.92 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhHHHHhh
Q 009143 14 VHIQILRFLYQTFDSIKL 31 (542)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (542)
+.+++||..+.++..+.+
T Consensus 3 slstffrlfnrsftqalg 20 (26)
T 2i2j_A 3 SLSTFFRLFNRSFTQALG 20 (26)
T ss_pred cHHHHHHHHhHHHHHHhc
Confidence 456788877777765543
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.38 E-value=2e+02 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=8.2
Q ss_pred ccCChHHHHHHHHHHHh
Q 009143 453 NLGHIHLALQLYDEMLR 469 (542)
Q Consensus 453 ~~g~~~~A~~~~~~~~~ 469 (542)
..|++-+|.+++++.-.
T Consensus 44 n~g~yfeaHEvLEe~W~ 60 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWY 60 (161)
T ss_dssp HTTCHHHHHHHHHHHTT
T ss_pred hCCCchHHHHHHHHHHH
Confidence 33555555555554444
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.01 E-value=2.4e+02 Score=30.11 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=65.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCC-----------------
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRP----------------- 221 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------- 221 (542)
++..+...|..+-|.++...+ + .+...--.+..+|...|++++|.+.|++... |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~----~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL----N-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC----C-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc----C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 455555566666553322211 1 2333223455666666777777776665421 1110
Q ss_pred ------ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHhcC
Q 009143 222 ------NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG-KATSDVITSTILMDSYFKNG 275 (542)
Q Consensus 222 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 275 (542)
...-|..++..+-+.+.++.+.++-+.+++.-.. ........|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1235788999999999999999998888875331 10012347888888887765
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.83 E-value=1.6e+02 Score=23.04 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=9.2
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 009143 229 LVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~ 249 (542)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 334444444444444444444
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.48 E-value=1.1e+02 Score=27.47 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCC
Q 009143 264 STILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD--ISSAFAYFCQMLKRGFLP 329 (542)
Q Consensus 264 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~p 329 (542)
...++.-|...|+.++|.+.++++.... .........+..++-+.++ .+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4566777777788888888887775211 0112223333333333322 344556666666555443
No 325
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.13 E-value=1.1e+02 Score=21.81 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----HcCCCCChhHHHHH
Q 009143 458 HLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ-----TLGLAIDHIPFRIL 517 (542)
Q Consensus 458 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~~~l 517 (542)
-.|.++.+++...|+.|+..+..-++..|...+- .+.++.++.. ..|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3477888888888999999888888888877664 2444444432 24677777766554
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.76 E-value=5.3e+02 Score=27.45 Aligned_cols=131 Identities=10% Similarity=0.018 Sum_probs=74.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHh
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (542)
++..+...|..+-|.++... .+.++..--.+..+|...|++++|...|+++-.. ..........
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g-l~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT-TCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cccCcccccc----------
Confidence 66777778888766554322 3334444445888999999999999999886431 1010000000
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 009143 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQG 345 (542)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g 345 (542)
......++.... .. .....-|..++..+-+.+.++-+.++-+...+.--.-|. ..|..+.++.+..|
T Consensus 880 ---~~~~~~ll~~~e-~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 ---LREFQEIAEKYH-HQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ---GHHHHHHHHHTT-TC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---hhhhhhccCccc-cc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011111121111 10 122346777888888888888888888877764212222 35666666666544
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.24 E-value=1.4e+02 Score=23.47 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCC
Q 009143 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD--ISSAFAYFCQMLKRGFLP 329 (542)
Q Consensus 263 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~p 329 (542)
....++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45667888888888999988888885211 1122333444444444322 345666777776665443
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.12 E-value=46 Score=21.19 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 009143 171 KADHVIREMSEMRPSPNCATYNAFITGY 198 (542)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (542)
+|.+.|.+|++..-.+...+|...|+..
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 4444444443322222334444444444
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.92 E-value=1.8e+02 Score=22.53 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHhhCCCCCCHH
Q 009143 169 LEKADHVIREMSEMRPSPNCA 189 (542)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~~ 189 (542)
.-.|.++++.+.+.++..+..
T Consensus 33 h~sa~ei~~~l~~~~~~is~a 53 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLA 53 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHH
T ss_pred CCCHHHHHHHHHHhCCCCCHH
Confidence 344444444444444333333
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.74 E-value=2.7e+02 Score=23.23 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChh-----HHHHHHHHHhhCCCC
Q 009143 114 LETDYRRHVAVIRDLCLG---GKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLE-----KADHVIREMSEMRPS 185 (542)
Q Consensus 114 ~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-----~A~~~~~~~~~~~~~ 185 (542)
...+-..+.-+|+++.++ .+++.|+-.+-+|++.|..|....-..++-+.-.-|.-+ -|...++.....|.+
T Consensus 28 yDk~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 28 YDKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred cCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Q ss_pred CCHHhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 009143 186 PNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (542)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (542)
--.......+-.++..-+-..+ ..++...+
T Consensus 108 E~~i~LaqaviyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 108 EGLFFLSQASLYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp TTHHHHHHHHHHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccHHH-HHHHHHHH
No 331
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.27 E-value=1.7e+02 Score=20.85 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 009143 418 SNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (542)
Q Consensus 418 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 446 (542)
-.|.++.++....|+.|+......++.-|
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45777788888888888887777777764
No 332
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=27.24 E-value=3.1e+02 Score=23.79 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=17.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Q 009143 268 MDSYFKNGDKFQALALWNDMFQKN---IQTDIVAYNVLINGF 306 (542)
Q Consensus 268 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~ 306 (542)
+...-+.+++++..+.+.++.+.+ ...+..--+.|-.+|
T Consensus 35 AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 35 AKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 333444455555555555554443 334444444443333
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.29 E-value=1.4e+02 Score=23.57 Aligned_cols=46 Identities=7% Similarity=0.063 Sum_probs=21.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHC--CCCCChHHHHHHHHHHHhcCC
Q 009143 193 AFITGYCRVNELDKALHLFSTMANN--GIRPNRVTHNILVHALCKKGL 238 (542)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~ 238 (542)
.++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3344444444455555555555544 333344443334444444443
No 334
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.30 E-value=1.8e+02 Score=24.09 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=38.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH---HhHHHHHHH
Q 009143 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLT---HNYLVNELCKIGDLEKADHVIREMSEMRPSPNC---ATYNAFITG 197 (542)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~ 197 (542)
.+...++.|+.+-+. .+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++. ... ..+..
T Consensus 45 ~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~-t~l~~ 115 (240)
T 3eu9_A 45 LLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV----VQLMKYGADPSLIDGEGC-SCIHL 115 (240)
T ss_dssp HHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSC-CHHHH
T ss_pred HHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH----HHHHHcCCCCcccCCCCC-CHHHH
Confidence 455556778765444 4444544333211 12234444556766554 444444443332 112 23344
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCC
Q 009143 198 YCRVNELDKALHLFSTMANNGIRP 221 (542)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p 221 (542)
.+..|+.+ +++.+.+.|..+
T Consensus 116 A~~~~~~~----~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 116 AAQFGHTS----IVAYLIAKGQDV 135 (240)
T ss_dssp HHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHcCHHH----HHHHHHhcCCCc
Confidence 45556654 334444445443
No 335
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.89 E-value=2.9e+02 Score=22.78 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=15.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009143 413 RCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (542)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 443 (542)
+..+++.|+-.+.+|++.| .|....-..++
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi 55 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMV 55 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 3455666666666666665 44444433333
No 336
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.79 E-value=1.2e+02 Score=21.38 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 009143 479 YTELIKGHCARGNMKEAEEVFAK 501 (542)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~ 501 (542)
+.-..+.+.+.|+|++|++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 34455666666677766665543
No 337
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.60 E-value=2.7e+02 Score=22.31 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=20.7
Q ss_pred CHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 009143 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (542)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 239 (542)
+...-...+.++.+.+..+. ...+..+.. .++...-...+.++.+.++.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 33333444444444444322 222222322 23444444555555555543
No 338
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.59 E-value=2.5e+02 Score=21.78 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=18.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHHcC
Q 009143 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (542)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (542)
+++.+...+..-.|.++++.+.+.++..+..|.--.+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33344444444455555555544444334333333333333333
No 339
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.13 E-value=79 Score=25.59 Aligned_cols=14 Identities=0% Similarity=0.062 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCCC
Q 009143 281 LALWNDMFQKNIQT 294 (542)
Q Consensus 281 ~~~~~~~~~~~~~~ 294 (542)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 44555555555443
No 340
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.10 E-value=2.3e+02 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=9.4
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 009143 229 LVHALCKKGLLGDAVKFLGEV 249 (542)
Q Consensus 229 l~~~~~~~g~~~~a~~~~~~~ 249 (542)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 341
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.24 E-value=2.9e+02 Score=22.14 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=34.0
Q ss_pred CCHHhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHH
Q 009143 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (542)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (542)
++...-...+..+.+.+..+....+. ++.. .++...-...+.++.+.|..+. ...+.+++. . ++..+-.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~----d--~~~~vr~ 94 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK----D--EDGWVRQ 94 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----C--SSHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----C--CCHHHHH
Confidence 34444444445555555433222222 2222 2344444445555555554332 223333322 1 3444444
Q ss_pred HHHHHHHhcCCH
Q 009143 266 ILMDSYFKNGDK 277 (542)
Q Consensus 266 ~l~~~~~~~g~~ 277 (542)
..+.++.+.|+.
T Consensus 95 ~a~~aL~~~~~~ 106 (201)
T 3ltj_A 95 SAAVALGQIGDE 106 (201)
T ss_dssp HHHHHHHHHCCG
T ss_pred HHHHHHHHhCcH
Confidence 445555555543
No 342
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.14 E-value=1.8e+02 Score=20.49 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=7.2
Q ss_pred CChHHHHHHHHHHHh
Q 009143 415 GDLSNAFSIRDLMLS 429 (542)
Q Consensus 415 g~~~~A~~~~~~m~~ 429 (542)
|++-+|-++++..=.
T Consensus 15 g~~~eaHEvlE~~W~ 29 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWL 29 (94)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 455555555444433
No 343
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.89 E-value=1.4e+02 Score=18.18 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHhHcCCCC
Q 009143 491 NMKEAEEVFAKIQTLGLAI 509 (542)
Q Consensus 491 ~~~~A~~~~~~m~~~g~~~ 509 (542)
+...|.++++++.+.|--|
T Consensus 8 Dv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 3455566666665555433
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.88 E-value=1.8e+02 Score=19.50 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 009143 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKG 237 (542)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 237 (542)
-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444443332333333333334443333
No 345
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.26 E-value=1.9e+02 Score=21.78 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 238 (542)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444445555666666666655444455554445555555553
No 346
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.20 E-value=4.1e+02 Score=23.50 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=23.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 009143 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (542)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 436 (542)
++.|+.+ +.+.+++.|..++..+ . +..-++.|+.+ +.+.+++.|-.||.
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 4456643 3344455665555433 2 23334455543 44555666666654
No 347
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.07 E-value=2.4e+02 Score=20.77 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccccccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 009143 416 DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGASCNLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHCARGNMKE 494 (542)
Q Consensus 416 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~ 494 (542)
.+.+|+.-+++..+. .+|......++..+. --++.++++.+...+ .|+ .+.++...+....+.|-.++
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe-------~t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~ 71 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFE-------FTFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPE 71 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCc
Confidence 567777777777653 666666777775532 225556666665554 565 35667777777777777655
Q ss_pred HHHHHHHHhH
Q 009143 495 AEEVFAKIQT 504 (542)
Q Consensus 495 A~~~~~~m~~ 504 (542)
. +.|..|..
T Consensus 72 ~-~~w~~m~~ 80 (119)
T 1wty_A 72 D-PFWLEMLE 80 (119)
T ss_dssp C-HHHHHHHH
T ss_pred H-HHHHHHHH
Confidence 5 45556654
No 348
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.17 E-value=5.5e+02 Score=24.58 Aligned_cols=135 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009143 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (542)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 289 (542)
.++-..+.|++--...|..-.+.+...|++++|.++-......-. .+..+.+.+-..-...|...--+.+|..+.+
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giL----Rt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~ 423 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGIL----RTPDTIRRFQSVPAQPGQTSPLLQYFGILLD 423 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSS----CSHHHHHHHTTSCCCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccc----cCHHHHHHHhcCCCCCCCCCHHHHHHHHHhc
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009143 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (542)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (542)
.| ..+..----+++.-...|+.+-....+.+ +.-+++-=+.-+.+..+...|..+|.+.
T Consensus 424 ~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 424 QG-QLNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp HS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred cC-ccchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 349
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.07 E-value=3.2e+02 Score=21.83 Aligned_cols=65 Identities=5% Similarity=0.077 Sum_probs=30.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCh
Q 009143 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVI---TYNTLLNCLCK-QGKLDEASHFYGVLSKTGVAPDQ 366 (542)
Q Consensus 302 li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~ 366 (542)
.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..+.....++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 3444455555555555666666666554432 12222222221 12233344555556666655443
No 350
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.97 E-value=3.2e+02 Score=21.82 Aligned_cols=130 Identities=8% Similarity=-0.003 Sum_probs=57.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHh
Q 009143 374 QGLCIHGDIVKAREFLLSMLEKSVVPEPH---IWNVIIDGYGR-CGDLSNAFSIRDLMLSFGVSSNVFT---FNALILAE 446 (542)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~ 446 (542)
...+..|+.+.-.++.+-+++.|..++.. -++.|..++.. ..+.....++.+.+++.|..++... .++.+..
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~- 121 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN- 121 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGG-
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHH-
Confidence 33344455554455555566655444321 12223222221 2233444566666777776655422 1012221
Q ss_pred hcccccccCCh-HHHHHHHHHHHh-CCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhHcCCC
Q 009143 447 TRGASCNLGHI-HLALQLYDEMLR-RGITPDIITYT--ELIKGHCARGNMKEAEEVFAKIQTLGLA 508 (542)
Q Consensus 447 ~~~~~~~~g~~-~~A~~~~~~~~~-~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (542)
.+..+.. ..-..+++-+.+ .|..++..... +-+....+.|+.+-..-+.+.+.+.+.+
T Consensus 122 ----A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 122 ----IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp ----GGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred ----HHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 1122222 344556677777 67666542211 2233334555554444444444444443
No 351
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.42 E-value=1.1e+02 Score=18.97 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 009143 492 MKEAEEVFAKI 502 (542)
Q Consensus 492 ~~~A~~~~~~m 502 (542)
++.|.+.+.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.40 E-value=1.2e+02 Score=23.23 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChh
Q 009143 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLE 170 (542)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 170 (542)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345555555566677777777776655556666666666666666543
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.04 E-value=1.7e+02 Score=22.36 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 009143 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (542)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 238 (542)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444455566666666555444444444444455555443
No 354
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.02 E-value=5.6e+02 Score=24.24 Aligned_cols=152 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHh
Q 009143 276 DKFQALALWNDMFQ--------KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF----LPDVITYNTLLNCLCK 343 (542)
Q Consensus 276 ~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~ 343 (542)
..++...+++.... .++..+......++.. ..|+..+++.+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHh
Q 009143 344 Q------------------------GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD-----IVKAREFLLSMLE 394 (542)
Q Consensus 344 ~------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~ 394 (542)
. ++.+.|..++..|.+.|..|....-..+..+.-..|. ..-|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009143 395 KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (542)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (542)
.|.+-........+-.++..-+...+...++...+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Done!