Query 009144
Match_columns 542
No_of_seqs 94 out of 120
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 19:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wij_A Ethylene-insensitive3-l 100.0 8.7E-82 3E-86 562.3 3.7 138 166-304 2-139 (140)
2 3q7c_A Nucleoprotein; deddh ex 47.4 9.2 0.00031 37.5 2.5 72 219-290 60-172 (243)
3 3h3g_B Parathyroid hormone-rel 37.2 14 0.00047 25.2 1.4 13 45-57 3-15 (24)
4 3mwp_A Nucleoprotein; structur 32.4 21 0.0007 38.4 2.5 162 95-290 284-506 (577)
5 2hac_A T-cell surface glycopro 22.9 12 0.0004 27.2 -1.0 6 113-118 13-18 (33)
6 1g5h_A Mitochondrial DNA polym 19.4 24 0.00082 36.2 0.1 40 101-141 24-78 (454)
7 2d42_A Non-toxic crystal prote 14.5 68 0.0023 31.7 1.9 14 104-117 13-26 (249)
8 1zfd_A SWI5; DNA binding motif 13.8 43 0.0015 19.8 0.2 25 397-426 2-26 (32)
9 2eod_A TNF receptor-associated 13.2 46 0.0016 23.6 0.3 30 396-431 34-64 (66)
10 1zei_A Insulin, B28Asp-X-MCR; 13.1 42 0.0014 25.9 0.0 13 104-116 15-27 (53)
No 1
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1
Probab=100.00 E-value=8.7e-82 Score=562.33 Aligned_cols=138 Identities=71% Similarity=1.235 Sum_probs=126.5
Q ss_pred CCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhh
Q 009144 166 CGSVVSTPHSLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPNGNEEWWPQLGLPKDLGPPPYKKPHDLKKAW 245 (542)
Q Consensus 166 ~~~~~~~~h~L~dLqDtTLGSLLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKaw 245 (542)
+++.++++|+|+||||||||||||||||||+|||||||||||+||||||||+|+||+++|++++|+ |||||||||||||
T Consensus 2 ~~~~~~~~h~L~~Lqd~TLgsllsaLmqhC~PPQR~~Plekg~~PPWWPtG~E~WW~~lGl~~~~~-PPYkkPhdLkKaw 80 (140)
T 1wij_A 2 SSGSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMW 80 (140)
T ss_dssp ------CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHH
T ss_pred CccccccHHHHHHHHHHhHHHHHHHHHhhCCCchhcCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCCchhhhHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred hhhhhhhhhhccCcCHHHHHHHHhhhccchhhhhhHhHhhHHHHHhhHHHHhhhcCCCC
Q 009144 246 KVSVLTAVIKHMFPDIAKIRKLVRQSKCLQDKMTAKESATWLAVINQEEALSRKLYPDS 304 (542)
Q Consensus 246 KV~VLtAVIKHmsPd~~kir~lVrqSkcLQdKmTakEs~tW~~vl~qEE~l~~~l~p~~ 304 (542)
||+|||||||||||||+|||+|||||||||||||||||+||++||||||+++++++|++
T Consensus 81 KV~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTakEs~~W~~vl~~Ee~~~~~~~p~~ 139 (140)
T 1wij_A 81 KVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQSGPSS 139 (140)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999875
No 2
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=47.38 E-value=9.2 Score=37.52 Aligned_cols=72 Identities=24% Similarity=0.387 Sum_probs=49.3
Q ss_pred ccccccCCCCCCCC------------CCCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------H
Q 009144 219 EWWPQLGLPKDLGP------------PPYKKPHDLKKAW-----------------KVSVLTAVIKHMFPDI-------A 262 (542)
Q Consensus 219 ~WW~~~g~~~~~gp------------PPYkKPHdLKKaw-----------------KV~VLtAVIKHmsPd~-------~ 262 (542)
.|=.=.|-|.+++- -=||+|||.|-.= .-|+++|||+|+-++. +
T Consensus 60 tWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPGL~S~vi~~LP~nMVlT~QGsD 139 (243)
T 3q7c_A 60 TWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSD 139 (243)
T ss_dssp CEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTTHHHHHHHHSCTTCEEEESSHH
T ss_pred eEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChH
Confidence 45555566665531 1399999987431 2379999999998875 7
Q ss_pred HHHHHHhh-----hccchhhhhhHhHhhHHHHH
Q 009144 263 KIRKLVRQ-----SKCLQDKMTAKESATWLAVI 290 (542)
Q Consensus 263 kir~lVrq-----SkcLQdKmTakEs~tW~~vl 290 (542)
.||+|+-. =|-+-=|||+.+|......|
T Consensus 140 DIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~V 172 (243)
T 3q7c_A 140 DIRKLLESQGRKDIKLIDIALSKTDSRKYENAV 172 (243)
T ss_dssp HHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHH
T ss_pred HHHHHHHhcCCccceEEEeecCHHHHHHHHHHH
Confidence 89998843 34555689999887664443
No 3
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=37.16 E-value=14 Score=25.24 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=10.3
Q ss_pred CHHHHHHhhhhhh
Q 009144 45 DVDELERRMWRDR 57 (542)
Q Consensus 45 ~~eeLerRmWkDr 57 (542)
.+.||+||||-..
T Consensus 3 s~Q~~rRr~wL~~ 15 (24)
T 3h3g_B 3 SIQDLRRRFFLHH 15 (26)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4789999999644
No 4
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=32.35 E-value=21 Score=38.39 Aligned_cols=162 Identities=27% Similarity=0.375 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHhhccceeeecC----------------CCCcccCCCChhh--HHHHhhhhcccccchhhhhhhhhh
Q 009144 95 DGILKYMLKMMEVCKAQGFVYGIIP----------------EKGKPVSGASDNL--RAWWKEKVRFDRNGPAAIAKYQAD 156 (542)
Q Consensus 95 DgILkyMlKmMEvC~AqGFVYGIIp----------------ekGKPvsGaSDnL--R~WWKekVrFDrngPaAiaky~~~ 156 (542)
++|||-+|+ |=++-|..-.-.| -.|=|-.||--.| |+|=---|-|+...+..
T Consensus 284 ~~iiK~~L~---vK~~e~MFVs~~PG~RNPYENlLYKlCLSGeGWPYI~SRsqI~GRaWdNT~vdl~~~~~~~------- 353 (577)
T 3mwp_A 284 DGILKSILK---VKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDGKPQ------- 353 (577)
T ss_dssp HHHHHHHHH---HHHHHTCCCCSCCSSCCHHHHHHHHHHHCSSBCTTTSBCTTCCSCHHHHEEECC--------------
T ss_pred HHHHHHHHH---HHHhcCceecCCCCCCChHHHHHHHHhhCCCCCcceeeccccccccccCceEecCCCCCCC-------
Confidence 467777665 4455554434443 3577888877666 88988888888776322
Q ss_pred hhccCCCCCCC--CCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCC--
Q 009144 157 HAILGKNEDCG--SVVSTPHSLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPNGNEEWWPQLGLPKDLGP-- 232 (542)
Q Consensus 157 ~~~~~~~~~~~--~~~~~~h~L~dLqDtTLGSLLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gp-- 232 (542)
..|..|.+-. .... ...|.+.|-. +|...|+.-+|-- ..|-.-.|-|.|+.-
T Consensus 354 -~~p~rnG~~~~~~~~~-l~~L~~~qe~----~~k~~~~~ldp~~------------------ttWiDIEG~p~DPVE~A 409 (577)
T 3mwp_A 354 -KADSNNSSKSLQSAGF-TAGLTYSQLM----TLKDAMLQLDPNA------------------KTWMDIEGRPEDPVEIA 409 (577)
T ss_dssp --------------------CCCHHHHH----HHHHHGGGSCTTS------------------CEEEEEESCTTSCSEEE
T ss_pred -CCCccCcccccccCCc-ccCCCHHHHH----HHHHHHHhCCCCC------------------CeEEecCCCCCCCeEEE
Confidence 1233332111 1111 3344444443 4455566666532 345555566665431
Q ss_pred ----------CCCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHhh-----hcc
Q 009144 233 ----------PPYKKPHDLKKAW-----------------KVSVLTAVIKHMFPDI-------AKIRKLVRQ-----SKC 273 (542)
Q Consensus 233 ----------PPYkKPHdLKKaw-----------------KV~VLtAVIKHmsPd~-------~kir~lVrq-----Skc 273 (542)
-=||+|||.|-.= .-|+++|||+|+-++. +.||+|.-. =|-
T Consensus 410 iyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL~S~vi~~LP~~mV~T~QGsdDI~kLld~hGR~DiK~ 489 (577)
T 3mwp_A 410 LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKL 489 (577)
T ss_dssp EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTCEE
T ss_pred EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceE
Confidence 1399999987431 2379999999998875 789988743 345
Q ss_pred chhhhhhHhHhhHHHHH
Q 009144 274 LQDKMTAKESATWLAVI 290 (542)
Q Consensus 274 LQdKmTakEs~tW~~vl 290 (542)
+-=|||+.+|......+
T Consensus 490 iDV~lt~eqaR~fEd~V 506 (577)
T 3mwp_A 490 IDIALSKTDSRKYENAV 506 (577)
T ss_dssp EECCCCHHHHTTTHHHH
T ss_pred EEeecCHHHHHHHHHHH
Confidence 55689999887654443
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=22.89 E-value=12 Score=27.25 Aligned_cols=6 Identities=67% Similarity=1.752 Sum_probs=4.4
Q ss_pred ceeeec
Q 009144 113 FVYGII 118 (542)
Q Consensus 113 FVYGII 118 (542)
|+||||
T Consensus 13 ~iYgii 18 (33)
T 2hac_A 13 FIYGVI 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 677776
No 6
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=19.39 E-value=24 Score=36.21 Aligned_cols=40 Identities=25% Similarity=0.648 Sum_probs=26.8
Q ss_pred HHHHHHHHhhccceee---ecCCCCcccCCCC-----------hhhHH-HHhhhhc
Q 009144 101 MLKMMEVCKAQGFVYG---IIPEKGKPVSGAS-----------DNLRA-WWKEKVR 141 (542)
Q Consensus 101 MlKmMEvC~AqGFVYG---IIpekGKPvsGaS-----------DnLR~-WWKekVr 141 (542)
|-|+++.|+.+|||+. |-|-+ -+|+|.- .||.. ||++.+.
T Consensus 24 ~~~~~~l~krrgf~~~s~eiy~g~-~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~ 78 (454)
T 1g5h_A 24 REALVDLCRRRHFLSGTPQQLSTA-ALLSGCHARFGPLGVELRKNLASQWWSSMVV 78 (454)
T ss_dssp -CHHHHHHHHTTSBCCCGGGGSHH-HHHHCCSCCBCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCccccchhcccC-CCCCcceeeeCchHHHHHHHHHHHHHHHHhh
Confidence 6789999999999763 22211 3667755 47877 8887554
No 7
>2d42_A Non-toxic crystal protein; parasporin, bacterial toxin, beta-pore-forming toxin, parasporal inclusion, hinge-bending motion; 2.07A {Bacillus thuringiensis}
Probab=14.55 E-value=68 Score=31.69 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=10.8
Q ss_pred HHHHHhhccceeee
Q 009144 104 MMEVCKAQGFVYGI 117 (542)
Q Consensus 104 mMEvC~AqGFVYGI 117 (542)
|||+|+|+|+-||.
T Consensus 13 ~~~~~~~~~~ty~~ 26 (249)
T 2d42_A 13 GMQYANSHQYTYGS 26 (249)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHhhhccceecc
Confidence 57888888888874
No 8
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=13.85 E-value=43 Score=19.81 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=17.4
Q ss_pred cccccCCCCCCCCCCCCCcccccccCcccc
Q 009144 397 KIYTCEFPQCPYGDYRLGFLERSSRNNHQL 426 (542)
Q Consensus 397 kvYTCen~qCP~Sd~~~GFlDrnsR~nHq~ 426 (542)
+.|.|....|. ..|..++.+..|+.
T Consensus 2 k~~~C~~~~C~-----k~f~~~~~L~~H~~ 26 (32)
T 1zfd_A 2 RPYSCDHPGCD-----KAFVRNHDLIRHKK 26 (32)
T ss_dssp CSBCCCCTTCC-----CCBSSSHHHHHHHG
T ss_pred CCCcCcCCCCC-----CccCCHHHHHHHHH
Confidence 46888777774 45777777777764
No 9
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=13.19 E-value=46 Score=23.57 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=22.7
Q ss_pred CcccccCCCCCCCCCCCCCcccccccCccccc-CCCC
Q 009144 396 QKIYTCEFPQCPYGDYRLGFLERSSRNNHQLN-CPYR 431 (542)
Q Consensus 396 qkvYTCen~qCP~Sd~~~GFlDrnsR~nHq~~-C~yr 431 (542)
.+.|.|.+ .|. ..|..+..+..|+.. |+.+
T Consensus 34 ~~p~~C~~-~C~-----k~f~~~~~L~~H~~~hc~~~ 64 (66)
T 2eod_A 34 RLPVACPN-QCG-----VGTVAREDLPGHLKDSCNTA 64 (66)
T ss_dssp SSEEECTT-CCS-----CCEEETTTHHHHHHTTSSSC
T ss_pred CcCccCCc-ccC-----cccccHHHHHHHHHhhcccC
Confidence 46799976 675 468888889999875 8765
No 10
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity, insulin mutant, cross-LINK, glucose metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E 1sju_A 2jzq_A
Probab=13.06 E-value=42 Score=25.90 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=10.6
Q ss_pred HHHHHhhccceee
Q 009144 104 MMEVCKAQGFVYG 116 (542)
Q Consensus 104 mMEvC~AqGFVYG 116 (542)
|--||..+||.|.
T Consensus 15 L~~vC~~rgf~~~ 27 (53)
T 1zei_A 15 LYLVCGERGFFYT 27 (53)
T ss_dssp HHHHHGGGCEEEE
T ss_pred HHHHHcccCeecC
Confidence 4568999999996
Done!