BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009145
         (542 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2KI97|THOC2_RHIFE THO complex subunit 2 OS=Rhinolophus ferrumequinum GN=THOC2 PE=3 SV=1
          Length = 1576

 Score = 36.6 bits (83), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 19/151 (12%)

Query: 280  DVRRKRENERRGEREFSRDREYGREVSS-----GGDASSMKSKSKS-VPQVSSADHHHHH 333
            +V  K   E+  E+E SR+R+  +E+ S     GG+ + +    KS VP+   A+     
Sbjct: 1348 NVESKSTQEKEREKEPSRERDIAKEMKSKENVKGGEKTPVSGSLKSPVPRSDIAEPEREQ 1407

Query: 334  RHRPVRSSPEPPLPPPPRPSK---RKSEHHHHLD---------RDRDYDYEYDRERERER 381
            + R + + P P      + S    ++S    +L+         ++R+ D + D ++ RER
Sbjct: 1408 KRRKIDTHPSPSHSSTVKDSLIELKESSAKLYLNHTPPSLSKSKEREMDKK-DLDKSRER 1466

Query: 382  EREREKERERDRNHHHRTESSSKHSSEPPTT 412
             REREK+ E+DR    R  S++     P  T
Sbjct: 1467 SREREKKDEKDRKERKRDHSNNDREVPPDLT 1497


>sp|C1FXW9|THOC2_DASNO THO complex subunit 2 OS=Dasypus novemcinctus GN=THOC2 PE=3 SV=1
          Length = 1613

 Score = 35.8 bits (81), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 280  DVRRKRENERRGEREFSRDREYGREVSS-----GGDASSMKSKSKS-VPQVSSADHHHHH 333
            +V  K   E+  E+E SR+R+  +++ S     GG+ +++    KS VP+   A+     
Sbjct: 1347 NVESKSTQEKEREKEPSRERDIAKDMKSKENVKGGEKTAVSGSLKSPVPRSDIAEPEREQ 1406

Query: 334  RHRPVRSSPEPPLPPPPRPSK---RKSEHHHHLD---------RDRDYDYEYDRERERER 381
            + R + + P P      + S    ++S    +++         ++R+ D + D ++ RER
Sbjct: 1407 KRRKIDTHPSPSHSSTVKDSLIELKESSAKLYINHTPPPLSKSKEREMDKK-DLDKSRER 1465

Query: 382  EREREKERERDRNHHHRTESSSKHSSEPPTTTTSSKPTSTAAAGADKKHK 431
             REREK+ E+DR    R  S++     P  T    +   T       KHK
Sbjct: 1466 SREREKKDEKDRKERKRDHSNNDREVPPDLTKRRKEENGTMGVS---KHK 1512


>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
          Length = 2876

 Score = 35.8 bits (81), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 277 RKADVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHR 336
           R  ++ + RE ++  E E  R+++  +E+  G +    K + K   +V   D        
Sbjct: 806 RDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRD------ 859

Query: 337 PVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDREREREREREREKERER 391
            VR      +    R   R+ +     +RDRD   E DR++E+ + RE+++E+ER
Sbjct: 860 KVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKER 914



 Score = 34.7 bits (78), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 10/114 (8%)

Query: 280 DVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVR 339
           ++ + RE +R  E E +R+++  +E+  G +    K + K + +    D         VR
Sbjct: 797 ELEKGREKDRDKEMEKAREKDQDKELEKGRE----KDQDKELEKGQEKDRD------KVR 846

Query: 340 SSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDREREREREREREKERERDR 393
                 +    R   R+ +     ++DRD   E DRE+ RER+R++ +E++RD+
Sbjct: 847 EKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDK 900


>sp|B1MTK1|THOC2_CALMO THO complex subunit 2 OS=Callicebus moloch GN=THOC2 PE=3 SV=1
          Length = 1600

 Score = 33.5 bits (75), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 22/166 (13%)

Query: 284  KRENERRGEREFSRDREYGREVSS-----GGDASSMKSKSKS-VPQVSSADHHHHHRHRP 337
            K   ER  E+E SR+R+  +E+ S     GG+ + +    KS VP+    +     + R 
Sbjct: 1352 KSSQEREREKEPSRERDIAKEMKSKENVKGGEKTPVSGSLKSPVPRSDIPEPEREQKRRK 1411

Query: 338  VRSSPEPPLPPPPRPSK---RKSEHHHHLD---------RDRDYDYEYDRERERERERER 385
            + + P P      + S    ++S    +++         ++R+ D + D ++ RER RER
Sbjct: 1412 IDTHPSPSHSSTVKDSLIELKESSAKLYINHTPPPLSKSKEREMDKK-DLDKSRERSRER 1470

Query: 386  EKERERDRNHHHRTESSSKHSSEPPTTTTSSKPTSTAAAGADKKHK 431
            EK+ E+DR    R  S+S     P  T    +   T       KHK
Sbjct: 1471 EKKDEKDRKERKRDHSNSDREVPPDLTKRRKEENGTMGVS---KHK 1513


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,313,304
Number of Sequences: 539616
Number of extensions: 9870096
Number of successful extensions: 90694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 1316
Number of HSP's that attempted gapping in prelim test: 66310
Number of HSP's gapped (non-prelim): 12873
length of query: 542
length of database: 191,569,459
effective HSP length: 122
effective length of query: 420
effective length of database: 125,736,307
effective search space: 52809248940
effective search space used: 52809248940
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)