Query 009145
Match_columns 542
No_of_seqs 93 out of 105
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 19:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 92.6 0.02 6.8E-07 58.5 -0.3 13 466-479 419-431 (437)
2 1wgm_A Ubiquitin conjugation f 90.3 0.22 7.5E-06 41.4 3.7 30 3-33 62-91 (98)
3 2yu4_A E3 SUMO-protein ligase 80.7 1.2 4.1E-05 36.2 3.4 23 9-31 61-83 (94)
4 2kr4_A Ubiquitin conjugation f 76.3 1.3 4.3E-05 35.6 2.2 28 3-31 53-80 (85)
5 2kre_A Ubiquitin conjugation f 75.7 1.5 5.3E-05 36.4 2.7 28 3-31 68-95 (100)
6 1t1h_A Gspef-atpub14, armadill 68.0 2.3 7.8E-05 32.5 1.9 28 3-31 48-75 (78)
7 3ztg_A E3 ubiquitin-protein li 36.9 20 0.00069 27.9 2.6 29 3-31 55-83 (92)
8 3lvg_A Clathrin heavy chain 1; 31.1 6.2 0.00021 43.2 -1.7 12 174-185 585-596 (624)
9 3pgw_B SM B; protein-RNA compl 26.5 1E+02 0.0034 30.2 6.0 12 207-218 189-200 (231)
10 4gyx_A Type III collagen fragm 24.1 69 0.0024 22.6 3.2 11 200-210 11-21 (31)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=92.62 E-value=0.02 Score=58.47 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=6.3
Q ss_pred cCCccCCCCCCCcc
Q 009145 466 SGHQKLPTNTNGYY 479 (542)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (542)
+||-.+++ .|||-
T Consensus 419 ~~~~~~~~-~~~~~ 431 (437)
T 3pgw_S 419 GGDGYLAP-ENGYL 431 (437)
T ss_pred CCCcccCC-Ccccc
Confidence 34544444 45553
No 2
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=90.26 E-value=0.22 Score=41.40 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.0
Q ss_pred ccCCcccccccCCCChhHHHHHHHHHhhcCC
Q 009145 3 VCGATNILADDLLPNKTLRNTINRILESGNN 33 (542)
Q Consensus 3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~~~ 33 (542)
+|+. .+..++|+||..|+..|..|++....
T Consensus 62 ~~~~-~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 62 FNRS-PLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp TTCS-BCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred CCCC-CCChhhceEcHHHHHHHHHHHHHcch
Confidence 4555 66778999999999999999998833
No 3
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.67 E-value=1.2 Score=36.15 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.6
Q ss_pred cccccCCCChhHHHHHHHHHhhc
Q 009145 9 ILADDLLPNKTLRNTINRILESG 31 (542)
Q Consensus 9 VLaDDL~PN~tLR~TI~~~L~~~ 31 (542)
+..+||+||..|+..|..|++..
T Consensus 61 l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 61 IRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp BCGGGEEECHHHHHHHHHHHTTC
T ss_pred cCHhhCcCCHHHHHHHHHHHHHh
Confidence 77899999999999999999887
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=76.33 E-value=1.3 Score=35.61 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.6
Q ss_pred ccCCcccccccCCCChhHHHHHHHHHhhc
Q 009145 3 VCGATNILADDLLPNKTLRNTINRILESG 31 (542)
Q Consensus 3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~ 31 (542)
+|+. .+..++|+||..|+..|..|++..
T Consensus 53 ~~~~-~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 53 FNRQ-MLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TTCC-BCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCcC-CCChHhcchHHHHHHHHHHHHHHh
Confidence 3555 567789999999999999999875
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=75.66 E-value=1.5 Score=36.42 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.8
Q ss_pred ccCCcccccccCCCChhHHHHHHHHHhhc
Q 009145 3 VCGATNILADDLLPNKTLRNTINRILESG 31 (542)
Q Consensus 3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~ 31 (542)
+|+. .+..++|+||..|+..|..|+...
T Consensus 68 ~~~~-~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 68 FNRQ-TLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp SSCC-BCCTTSSEECHHHHHHHHHHHHTT
T ss_pred CCCC-CCChhhceECHHHHHHHHHHHHHh
Confidence 3555 566789999999999999999877
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=67.99 E-value=2.3 Score=32.46 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.1
Q ss_pred ccCCcccccccCCCChhHHHHHHHHHhhc
Q 009145 3 VCGATNILADDLLPNKTLRNTINRILESG 31 (542)
Q Consensus 3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~ 31 (542)
+|.. .+..++|+||..|+..|..|++..
T Consensus 48 ~C~~-~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 48 KSQE-TLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp TTCC-BCSSCCCEECTTTHHHHHHHHHHS
T ss_pred CCcC-CCChhhCccCHHHHHHHHHHHHHc
Confidence 3666 677789999999999999999876
No 7
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=36.89 E-value=20 Score=27.95 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=24.6
Q ss_pred ccCCcccccccCCCChhHHHHHHHHHhhc
Q 009145 3 VCGATNILADDLLPNKTLRNTINRILESG 31 (542)
Q Consensus 3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~ 31 (542)
+|...-+..++|.||..|+..|..|+...
T Consensus 55 ~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 55 TCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp TTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred CCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 46664457899999999999999999876
No 8
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.07 E-value=6.2 Score=43.24 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCC
Q 009145 174 AESCMMPLGPSA 185 (542)
Q Consensus 174 ~~~YmMP~gP~~ 185 (542)
+..-|++.||+.
T Consensus 585 ~~~lm~~~gp~~ 596 (624)
T 3lvg_A 585 QPQLMLTAGPSV 596 (624)
T ss_dssp ------------
T ss_pred CccchhhcCCCC
Confidence 445677778765
No 9
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=26.54 E-value=1e+02 Score=30.23 Aligned_cols=12 Identities=50% Similarity=0.733 Sum_probs=4.9
Q ss_pred CCCCCCCCCCCC
Q 009145 207 MGPFAGAMPYMP 218 (542)
Q Consensus 207 mGPf~gpMP~mG 218 (542)
|+|.+++.|.||
T Consensus 189 ~~p~~g~~~~~g 200 (231)
T 3pgw_B 189 MGPPPGMRPPMG 200 (231)
T ss_pred cCCCCCCCCCCC
Confidence 444444333333
No 10
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=24.11 E-value=69 Score=22.60 Aligned_cols=11 Identities=55% Similarity=1.096 Sum_probs=7.8
Q ss_pred ccCccCCCCCC
Q 009145 200 QPGMEGYMGPF 210 (542)
Q Consensus 200 ~Pgm~GymGPf 210 (542)
||+.+||.||.
T Consensus 11 qpgvmgfpgpp 21 (31)
T 4gyx_A 11 QPGVMGFPGPP 21 (31)
T ss_dssp CCCCCCCCCCC
T ss_pred CCccccCCCCC
Confidence 77777777754
Done!